| Clone Name | FLbaf33d12 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_001060897.1| Oryza sativa (japonica cultivar-group) Os04g0691800 (Os04g0691800) mRNA, complete cds Length = 3066 Score = 79.8 bits (40), Expect = 5e-11 Identities = 85/100 (85%) Strand = Plus / Plus Query: 2405 agtcgtcgttcgccagcaagatcctactcaggatcagcctggagacgacgtaccacgtca 2464 ||||||||||||| |||||||||| || || | |||||||||||| |||||||||| Sbjct: 1727 agtcgtcgttcgcgagcaagatccacctgcggctgagcctggagacggcgtaccacgtgt 1786 Query: 2465 tgtacgagtcgatgaagtacatcagcgacctgcagccggc 2504 || ||||||||| | | |||| |||||||||||||||||| Sbjct: 1787 tggacgagtcgacgcactacagcagcgacctgcagccggc 1826 Score = 75.8 bits (38), Expect = 7e-10 Identities = 59/66 (89%) Strand = Plus / Plus Query: 2035 tccaaggtgtactactcgcccaagctcatctaccttaaggtcgccgtcatcgcggcgcac 2094 ||||||||||||||||| ||||||||||||||||| ||||| | | |||||||||||| Sbjct: 1324 tccaaggtgtactactcccccaagctcatctacctcaaggtggtggccatcgcggcgcaa 1383 Query: 2095 gacctc 2100 |||||| Sbjct: 1384 gacctc 1389 Score = 69.9 bits (35), Expect = 4e-08 Identities = 101/123 (82%) Strand = Plus / Plus Query: 1672 ggcaacttcaagggcgtgacacggcgcctggagaagaacgccaacccggtgtggcaacag 1731 ||||||||||||||||| || || | ||| ||||||||| ||||||||||||||| ||| Sbjct: 955 ggcaacttcaagggcgtcacccgccacctcgagaagaaccccaacccggtgtggcgccag 1014 Query: 1732 ctcttcaccgtctccgccgcccacctgcaatccaaccagctgcaggttatcgtcaagcac 1791 ||||| || ||||| || |||||||| |||| |||||| |||| |||||||| || Sbjct: 1015 gtcttcgccttctcccgcgatcacctgcagtccagccagcttgaggtggtcgtcaaggac 1074 Query: 1792 aag 1794 ||| Sbjct: 1075 aag 1077 Score = 58.0 bits (29), Expect = 2e-04 Identities = 59/69 (85%) Strand = Plus / Plus Query: 2203 tggaacgaggagttcttgttcgtggtcagcgagccatttgaggaccagctggtggtgacg 2262 ||||||||||||||| ||||||||| | ||||| || || || | ||||||||||||| Sbjct: 1492 tggaacgaggagttcctgttcgtggccgcggagccgttcgacgagccgctggtggtgacg 1551 Query: 2263 gtggaggag 2271 ||||||||| Sbjct: 1552 gtggaggag 1560
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4 Length = 35498469 Score = 79.8 bits (40), Expect = 5e-11 Identities = 85/100 (85%) Strand = Plus / Plus Query: 2405 agtcgtcgttcgccagcaagatcctactcaggatcagcctggagacgacgtaccacgtca 2464 ||||||||||||| |||||||||| || || | |||||||||||| |||||||||| Sbjct: 35435701 agtcgtcgttcgcgagcaagatccacctgcggctgagcctggagacggcgtaccacgtgt 35435760 Query: 2465 tgtacgagtcgatgaagtacatcagcgacctgcagccggc 2504 || ||||||||| | | |||| |||||||||||||||||| Sbjct: 35435761 tggacgagtcgacgcactacagcagcgacctgcagccggc 35435800 Score = 75.8 bits (38), Expect = 7e-10 Identities = 59/66 (89%) Strand = Plus / Plus Query: 2035 tccaaggtgtactactcgcccaagctcatctaccttaaggtcgccgtcatcgcggcgcac 2094 ||||||||||||||||| ||||||||||||||||| ||||| | | |||||||||||| Sbjct: 35435298 tccaaggtgtactactcccccaagctcatctacctcaaggtggtggccatcgcggcgcaa 35435357 Query: 2095 gacctc 2100 |||||| Sbjct: 35435358 gacctc 35435363 Score = 69.9 bits (35), Expect = 4e-08 Identities = 101/123 (82%) Strand = Plus / Plus Query: 1672 ggcaacttcaagggcgtgacacggcgcctggagaagaacgccaacccggtgtggcaacag 1731 ||||||||||||||||| || || | ||| ||||||||| ||||||||||||||| ||| Sbjct: 35434929 ggcaacttcaagggcgtcacccgccacctcgagaagaaccccaacccggtgtggcgccag 35434988 Query: 1732 ctcttcaccgtctccgccgcccacctgcaatccaaccagctgcaggttatcgtcaagcac 1791 ||||| || ||||| || |||||||| |||| |||||| |||| |||||||| || Sbjct: 35434989 gtcttcgccttctcccgcgatcacctgcagtccagccagcttgaggtggtcgtcaaggac 35435048 Query: 1792 aag 1794 ||| Sbjct: 35435049 aag 35435051 Score = 58.0 bits (29), Expect = 2e-04 Identities = 59/69 (85%) Strand = Plus / Plus Query: 2203 tggaacgaggagttcttgttcgtggtcagcgagccatttgaggaccagctggtggtgacg 2262 ||||||||||||||| ||||||||| | ||||| || || || | ||||||||||||| Sbjct: 35435466 tggaacgaggagttcctgttcgtggccgcggagccgttcgacgagccgctggtggtgacg 35435525 Query: 2263 gtggaggag 2271 ||||||||| Sbjct: 35435526 gtggaggag 35435534 Score = 56.0 bits (28), Expect = 7e-04 Identities = 55/64 (85%) Strand = Plus / Plus Query: 956 tggatctgaaacctgccaatatactgctcgacaatgacatggtaccaaaaataactgatt 1015 |||| |||||||| ||||||||||| || || ||| ||||||| ||||||||| | |||| Sbjct: 17940301 tggacctgaaaccggccaatatacttctagataataacatggtgccaaaaatagcagatt 17940360 Query: 1016 ttgg 1019 |||| Sbjct: 17940361 ttgg 17940364 Score = 42.1 bits (21), Expect = 9.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1010 ctgattttggcctgtcaaggt 1030 ||||||||||||||||||||| Sbjct: 35125453 ctgattttggcctgtcaaggt 35125433
>emb|AL606656.3|OSJN00099 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0020J19, complete sequence Length = 123272 Score = 79.8 bits (40), Expect = 5e-11 Identities = 85/100 (85%) Strand = Plus / Plus Query: 2405 agtcgtcgttcgccagcaagatcctactcaggatcagcctggagacgacgtaccacgtca 2464 ||||||||||||| |||||||||| || || | |||||||||||| |||||||||| Sbjct: 60504 agtcgtcgttcgcgagcaagatccacctgcggctgagcctggagacggcgtaccacgtgt 60563 Query: 2465 tgtacgagtcgatgaagtacatcagcgacctgcagccggc 2504 || ||||||||| | | |||| |||||||||||||||||| Sbjct: 60564 tggacgagtcgacgcactacagcagcgacctgcagccggc 60603 Score = 75.8 bits (38), Expect = 7e-10 Identities = 59/66 (89%) Strand = Plus / Plus Query: 2035 tccaaggtgtactactcgcccaagctcatctaccttaaggtcgccgtcatcgcggcgcac 2094 ||||||||||||||||| ||||||||||||||||| ||||| | | |||||||||||| Sbjct: 60101 tccaaggtgtactactcccccaagctcatctacctcaaggtggtggccatcgcggcgcaa 60160 Query: 2095 gacctc 2100 |||||| Sbjct: 60161 gacctc 60166 Score = 69.9 bits (35), Expect = 4e-08 Identities = 101/123 (82%) Strand = Plus / Plus Query: 1672 ggcaacttcaagggcgtgacacggcgcctggagaagaacgccaacccggtgtggcaacag 1731 ||||||||||||||||| || || | ||| ||||||||| ||||||||||||||| ||| Sbjct: 59732 ggcaacttcaagggcgtcacccgccacctcgagaagaaccccaacccggtgtggcgccag 59791 Query: 1732 ctcttcaccgtctccgccgcccacctgcaatccaaccagctgcaggttatcgtcaagcac 1791 ||||| || ||||| || |||||||| |||| |||||| |||| |||||||| || Sbjct: 59792 gtcttcgccttctcccgcgatcacctgcagtccagccagcttgaggtggtcgtcaaggac 59851 Query: 1792 aag 1794 ||| Sbjct: 59852 aag 59854 Score = 58.0 bits (29), Expect = 2e-04 Identities = 59/69 (85%) Strand = Plus / Plus Query: 2203 tggaacgaggagttcttgttcgtggtcagcgagccatttgaggaccagctggtggtgacg 2262 ||||||||||||||| ||||||||| | ||||| || || || | ||||||||||||| Sbjct: 60269 tggaacgaggagttcctgttcgtggccgcggagccgttcgacgagccgctggtggtgacg 60328 Query: 2263 gtggaggag 2271 ||||||||| Sbjct: 60329 gtggaggag 60337
>emb|CR855090.1| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0607F01, complete sequence Length = 94443 Score = 56.0 bits (28), Expect = 7e-04 Identities = 55/64 (85%) Strand = Plus / Plus Query: 956 tggatctgaaacctgccaatatactgctcgacaatgacatggtaccaaaaataactgatt 1015 |||| |||||||| ||||||||||| || || ||| ||||||| ||||||||| | |||| Sbjct: 83926 tggacctgaaaccggccaatatacttctagataataacatggtgccaaaaatagcagatt 83985 Query: 1016 ttgg 1019 |||| Sbjct: 83986 ttgg 83989
>ref|NM_001059095.1| Oryza sativa (japonica cultivar-group) Os04g0369100 (Os04g0369100) mRNA, complete cds Length = 2313 Score = 56.0 bits (28), Expect = 7e-04 Identities = 55/64 (85%) Strand = Plus / Plus Query: 956 tggatctgaaacctgccaatatactgctcgacaatgacatggtaccaaaaataactgatt 1015 |||| |||||||| ||||||||||| || || ||| ||||||| ||||||||| | |||| Sbjct: 404 tggacctgaaaccggccaatatacttctagataataacatggtgccaaaaatagcagatt 463 Query: 1016 ttgg 1019 |||| Sbjct: 464 ttgg 467
>emb|AL731632.2|OSJN00275 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0042I07, complete sequence Length = 129198 Score = 56.0 bits (28), Expect = 7e-04 Identities = 55/64 (85%) Strand = Plus / Plus Query: 956 tggatctgaaacctgccaatatactgctcgacaatgacatggtaccaaaaataactgatt 1015 |||| |||||||| ||||||||||| || || ||| ||||||| ||||||||| | |||| Sbjct: 30580 tggacctgaaaccggccaatatacttctagataataacatggtgccaaaaatagcagatt 30639 Query: 1016 ttgg 1019 |||| Sbjct: 30640 ttgg 30643
>emb|AL731587.2|OSJN00230 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0016N04, complete sequence Length = 164645 Score = 56.0 bits (28), Expect = 7e-04 Identities = 55/64 (85%) Strand = Plus / Plus Query: 956 tggatctgaaacctgccaatatactgctcgacaatgacatggtaccaaaaataactgatt 1015 |||| |||||||| ||||||||||| || || ||| ||||||| ||||||||| | |||| Sbjct: 137056 tggacctgaaaccggccaatatacttctagataataacatggtgccaaaaatagcagatt 137115 Query: 1016 ttgg 1019 |||| Sbjct: 137116 ttgg 137119
>emb|BX294026.1|NCB7H23 Neurospora crassa DNA linkage group V BAC contig B7H23 Length = 114377 Score = 50.1 bits (25), Expect = 0.041 Identities = 28/29 (96%) Strand = Plus / Plus Query: 949 attcacttggatctgaaacctgccaatat 977 |||||| |||||||||||||||||||||| Sbjct: 93089 attcacctggatctgaaacctgccaatat 93117
>ref|XM_955879.1| Neurospora crassa OR74A hypothetical protein (NCU04326.1) partial mRNA Length = 3234 Score = 50.1 bits (25), Expect = 0.041 Identities = 28/29 (96%) Strand = Plus / Plus Query: 949 attcacttggatctgaaacctgccaatat 977 |||||| |||||||||||||||||||||| Sbjct: 2578 attcacctggatctgaaacctgccaatat 2606
>emb|BX663528.10| Zebrafish DNA sequence from clone DKEYP-47F9 in linkage group 17, complete sequence Length = 193986 Score = 48.1 bits (24), Expect = 0.16 Identities = 27/28 (96%) Strand = Plus / Minus Query: 11 ccccccaccccacacacagagacacaca 38 |||||||||||||||||| ||||||||| Sbjct: 74203 ccccccaccccacacacacagacacaca 74176
>emb|CR381673.8| Zebrafish DNA sequence from clone CH211-209J3 in linkage group 2, complete sequence Length = 209213 Score = 46.1 bits (23), Expect = 0.64 Identities = 23/23 (100%) Strand = Plus / Plus Query: 678 agaatttgaccaagaggttcagt 700 ||||||||||||||||||||||| Sbjct: 17539 agaatttgaccaagaggttcagt 17561
>ref|XM_391878.3| PREDICTED: Apis mellifera similar to Cell division protein kinase 5 (Tau protein kinase II catalytic subunit) (TPKII catalytic subunit) (Serine/threonine-protein kinase PSSALRE), transcript variant 1 (LOC408325), mRNA Length = 1144 Score = 46.1 bits (23), Expect = 0.64 Identities = 23/23 (100%) Strand = Plus / Plus Query: 715 aaacacaaaaatgtagtaagatt 737 ||||||||||||||||||||||| Sbjct: 185 aaacacaaaaatgtagtaagatt 207
>emb|CR383666.7| Zebrafish DNA sequence from clone DKEY-30H2 in linkage group 2, complete sequence Length = 144370 Score = 46.1 bits (23), Expect = 0.64 Identities = 23/23 (100%) Strand = Plus / Plus Query: 678 agaatttgaccaagaggttcagt 700 ||||||||||||||||||||||| Sbjct: 80702 agaatttgaccaagaggttcagt 80724
>emb|CR391991.7| Zebrafish DNA sequence from clone DKEY-150E11 in linkage group 2, complete sequence Length = 188653 Score = 46.1 bits (23), Expect = 0.64 Identities = 23/23 (100%) Strand = Plus / Plus Query: 678 agaatttgaccaagaggttcagt 700 ||||||||||||||||||||||| Sbjct: 174314 agaatttgaccaagaggttcagt 174336
>emb|BX465846.14| Zebrafish DNA sequence from clone CH211-215B21 in linkage group 18, complete sequence Length = 109342 Score = 46.1 bits (23), Expect = 0.64 Identities = 23/23 (100%) Strand = Plus / Minus Query: 17 accccacacacagagacacacat 39 ||||||||||||||||||||||| Sbjct: 107396 accccacacacagagacacacat 107374
>emb|BX000697.7| Zebrafish DNA sequence from clone CH211-120M13 in linkage group 18, complete sequence Length = 186826 Score = 46.1 bits (23), Expect = 0.64 Identities = 23/23 (100%) Strand = Plus / Plus Query: 17 accccacacacagagacacacat 39 ||||||||||||||||||||||| Sbjct: 186773 accccacacacagagacacacat 186795
>ref|NM_001062155.1| Oryza sativa (japonica cultivar-group) Os05g0429700 (Os05g0429700) mRNA, complete cds Length = 2917 Score = 44.1 bits (22), Expect = 2.5 Identities = 28/30 (93%) Strand = Plus / Plus Query: 1657 gtggaggtgaaactgggcaacttcaagggc 1686 ||||||||||| || ||||||||||||||| Sbjct: 417 gtggaggtgaagctcggcaacttcaagggc 446
>emb|AM039964.1| Equus caballus genomic BAC clone CH241-245H5, containing seven defensin genes and SPAG11 gene (partial) Length = 212614 Score = 44.1 bits (22), Expect = 2.5 Identities = 25/26 (96%) Strand = Plus / Plus Query: 14 cccaccccacacacagagacacacat 39 ||||||||||||||||| |||||||| Sbjct: 200805 cccaccccacacacagacacacacat 200830
>emb|CR352332.11| Zebrafish DNA sequence from clone CH211-151K15 in linkage group 7, complete sequence Length = 179187 Score = 44.1 bits (22), Expect = 2.5 Identities = 22/22 (100%) Strand = Plus / Plus Query: 14 cccaccccacacacagagacac 35 |||||||||||||||||||||| Sbjct: 144963 cccaccccacacacagagacac 144984
>gb|AC130600.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0048I21, complete sequence Length = 137650 Score = 44.1 bits (22), Expect = 2.5 Identities = 28/30 (93%) Strand = Plus / Minus Query: 1657 gtggaggtgaaactgggcaacttcaagggc 1686 ||||||||||| || ||||||||||||||| Sbjct: 66174 gtggaggtgaagctcggcaacttcaagggc 66145
>gb|AC113201.15| Mus musculus chromosome 6, clone RP23-271G7, complete sequence Length = 205816 Score = 44.1 bits (22), Expect = 2.5 Identities = 25/26 (96%) Strand = Plus / Minus Query: 13 ccccaccccacacacagagacacaca 38 |||| ||||||||||||||||||||| Sbjct: 196483 cccctccccacacacagagacacaca 196458
>gb|AC117945.2| Homo sapiens chromosome 1 clone RP4-614N24, complete sequence Length = 160557 Score = 44.1 bits (22), Expect = 2.5 Identities = 25/26 (96%) Strand = Plus / Plus Query: 11 ccccccaccccacacacagagacaca 36 |||||| ||||||||||||||||||| Sbjct: 50938 cccccccccccacacacagagacaca 50963
>gb|AC091561.4| Homo sapiens chromosome 8, clone RP11-388G22, complete sequence Length = 191037 Score = 44.1 bits (22), Expect = 2.5 Identities = 28/30 (93%) Strand = Plus / Plus Query: 11 ccccccaccccacacacagagacacacatg 40 ||||| |||||||||||||| ||||||||| Sbjct: 139748 cccccaaccccacacacagaaacacacatg 139777
>gb|AC090796.13| Homo sapiens chromosome 8, clone RP11-246K15, complete sequence Length = 168055 Score = 44.1 bits (22), Expect = 2.5 Identities = 28/30 (93%) Strand = Plus / Plus Query: 11 ccccccaccccacacacagagacacacatg 40 ||||| |||||||||||||| ||||||||| Sbjct: 59689 cccccaaccccacacacagaaacacacatg 59718
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5 Length = 29737217 Score = 44.1 bits (22), Expect = 2.5 Identities = 28/30 (93%) Strand = Plus / Minus Query: 1657 gtggaggtgaaactgggcaacttcaagggc 1686 ||||||||||| || ||||||||||||||| Sbjct: 20939396 gtggaggtgaagctcggcaacttcaagggc 20939367
>emb|AL390785.15| Human DNA sequence from clone RP11-325N9 on chromosome 10, complete sequence Length = 203169 Score = 44.1 bits (22), Expect = 2.5 Identities = 22/22 (100%) Strand = Plus / Plus Query: 7 gtgtccccccaccccacacaca 28 |||||||||||||||||||||| Sbjct: 53216 gtgtccccccaccccacacaca 53237
>gb|AC154283.1| Mus musculus BAC clone RP24-279H4 from chromosome 14, complete sequence Length = 192706 Score = 44.1 bits (22), Expect = 2.5 Identities = 22/22 (100%) Strand = Plus / Plus Query: 7 gtgtccccccaccccacacaca 28 |||||||||||||||||||||| Sbjct: 79075 gtgtccccccaccccacacaca 79096
>gb|AC155655.8| Mus musculus 6 BAC RP24-66L18 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 203618 Score = 44.1 bits (22), Expect = 2.5 Identities = 25/26 (96%) Strand = Plus / Plus Query: 13 ccccaccccacacacagagacacaca 38 |||| ||||||||||||||||||||| Sbjct: 153617 cccctccccacacacagagacacaca 153642
>dbj|AK103559.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033132J08, full insert sequence Length = 2918 Score = 44.1 bits (22), Expect = 2.5 Identities = 28/30 (93%) Strand = Plus / Plus Query: 1657 gtggaggtgaaactgggcaacttcaagggc 1686 ||||||||||| || ||||||||||||||| Sbjct: 418 gtggaggtgaagctcggcaacttcaagggc 447
>emb|AL954869.9| Mouse DNA sequence from clone RP23-477I13 on chromosome X, complete sequence Length = 159365 Score = 44.1 bits (22), Expect = 2.5 Identities = 22/22 (100%) Strand = Plus / Minus Query: 18 ccccacacacagagacacacat 39 |||||||||||||||||||||| Sbjct: 68539 ccccacacacagagacacacat 68518
>ref|NM_001074071.1| Oryza sativa (japonica cultivar-group) Os11g0226100 (Os11g0226100) mRNA, complete cds Length = 2202 Score = 42.1 bits (21), Expect = 9.9 Identities = 36/41 (87%) Strand = Plus / Plus Query: 823 tgcttcgagtatatgcctaaagggagtcttgataactatat 863 |||| ||||||| |||||| |||||||||||| || ||||| Sbjct: 1597 tgctacgagtatttgcctacagggagtcttgacaagtatat 1637
>ref|XM_515417.2| PREDICTED: Pan troglodytes similar to cytochrome P450, transcript variant 2 (LOC459163), mRNA Length = 5463 Score = 42.1 bits (21), Expect = 9.9 Identities = 27/29 (93%) Strand = Plus / Minus Query: 10 tccccccaccccacacacagagacacaca 38 ||||||||||||||||||| | ||||||| Sbjct: 3702 tccccccaccccacacacacatacacaca 3674
>ref|XM_001167556.1| PREDICTED: Pan troglodytes similar to cytochrome P450, transcript variant 1 (LOC459163), mRNA Length = 5590 Score = 42.1 bits (21), Expect = 9.9 Identities = 27/29 (93%) Strand = Plus / Minus Query: 10 tccccccaccccacacacagagacacaca 38 ||||||||||||||||||| | ||||||| Sbjct: 3829 tccccccaccccacacacacatacacaca 3801
>emb|AM260479.1| Ralstonia eutropha H16 chromosome 1 Length = 4052032 Score = 42.1 bits (21), Expect = 9.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 2340 caacgacttggccaagtcggtgccg 2364 ||||||| ||||||||||||||||| Sbjct: 839331 caacgacctggccaagtcggtgccg 839355
>gb|CP000362.1| Roseobacter denitrificans OCh 114, complete genome Length = 4133097 Score = 42.1 bits (21), Expect = 9.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 2479 aagtacatcagcgacctgcag 2499 ||||||||||||||||||||| Sbjct: 3190947 aagtacatcagcgacctgcag 3190967
>gb|AC155972.2| Xenopus tropicalis clone CH216-33N3, complete sequence Length = 66217 Score = 42.1 bits (21), Expect = 9.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 5 gcgtgtccccccaccccacac 25 ||||||||||||||||||||| Sbjct: 35206 gcgtgtccccccaccccacac 35186
>gb|AC156003.2| Xenopus tropicalis clone ISB1-353C11, complete sequence Length = 78198 Score = 42.1 bits (21), Expect = 9.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 5 gcgtgtccccccaccccacac 25 ||||||||||||||||||||| Sbjct: 15523 gcgtgtccccccaccccacac 15543
>emb|AL732347.3| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0723C07, complete sequence Length = 112897 Score = 42.1 bits (21), Expect = 9.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1010 ctgattttggcctgtcaaggt 1030 ||||||||||||||||||||| Sbjct: 80577 ctgattttggcctgtcaaggt 80557
>gb|AC108402.12| Mus musculus chromosome 3, clone RP24-141M5, complete sequence Length = 125057 Score = 42.1 bits (21), Expect = 9.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 18 ccccacacacagagacacaca 38 ||||||||||||||||||||| Sbjct: 26843 ccccacacacagagacacaca 26823
>gb|AC102910.13| Mus musculus chromosome 15, clone RP24-280E23, complete sequence Length = 179719 Score = 42.1 bits (21), Expect = 9.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 4 tgcgtgtccccccaccccacacaca 28 ||||||||||||| ||||||||||| Sbjct: 87557 tgcgtgtcccccccccccacacaca 87533
>gb|AC115697.19| Mus musculus chromosome 7, clone RP24-233E11, complete sequence Length = 161690 Score = 42.1 bits (21), Expect = 9.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 19 cccacacacagagacacacat 39 ||||||||||||||||||||| Sbjct: 24052 cccacacacagagacacacat 24072
>gb|AC084385.5| Mus musculus chromosome 15 clone RP23-54K18, complete sequence Length = 203712 Score = 42.1 bits (21), Expect = 9.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 4 tgcgtgtccccccaccccacacaca 28 ||||||||||||| ||||||||||| Sbjct: 933 tgcgtgtcccccccccccacacaca 909
>gb|AC109157.10| Mus musculus chromosome 7, clone RP24-169M16, complete sequence Length = 164968 Score = 42.1 bits (21), Expect = 9.9 Identities = 27/29 (93%) Strand = Plus / Plus Query: 10 tccccccaccccacacacagagacacaca 38 ||||||||||||||||||| | ||||||| Sbjct: 22920 tccccccaccccacacacacacacacaca 22948
>gb|AF301594.1| Triatoma dimidiata mitochondrial DNA, complete genome Length = 17019 Score = 42.1 bits (21), Expect = 9.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 2001 ctccctgtccttgcaggagct 2021 ||||||||||||||||||||| Sbjct: 1976 ctccctgtccttgcaggagct 1996
>gb|DQ198804.1| Triatoma longipennis voucher EP-05-005(CIAD) cytochrome c oxidase subunit I (COI) gene, partial cds; mitochondrial Length = 636 Score = 42.1 bits (21), Expect = 9.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 2001 ctccctgtccttgcaggagct 2021 ||||||||||||||||||||| Sbjct: 548 ctccctgtccttgcaggagct 568
>gb|AC118710.7| Mus musculus chromosome 15, clone RP24-121C9, complete sequence Length = 175437 Score = 42.1 bits (21), Expect = 9.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 21 cacacacagagacacacatgg 41 ||||||||||||||||||||| Sbjct: 94358 cacacacagagacacacatgg 94378
>gb|AC119951.12| Mus musculus chromosome 9, clone RP24-448C4, complete sequence Length = 215131 Score = 42.1 bits (21), Expect = 9.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 21 cacacacagagacacacatgg 41 ||||||||||||||||||||| Sbjct: 49298 cacacacagagacacacatgg 49278
>gb|AC127554.4| Mus musculus BAC clone RP24-323K23 from chromosome 8, complete sequence Length = 178416 Score = 42.1 bits (21), Expect = 9.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 18 ccccacacacagagacacaca 38 ||||||||||||||||||||| Sbjct: 129949 ccccacacacagagacacaca 129969
>gb|AC123034.5| Mus musculus BAC clone RP24-484E17 from chromosome 13, complete sequence Length = 177675 Score = 42.1 bits (21), Expect = 9.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 20 ccacacacagagacacacatg 40 ||||||||||||||||||||| Sbjct: 143322 ccacacacagagacacacatg 143342
>gb|AC117261.4| Mus musculus BAC clone RP24-537K7 from chromosome 17, complete sequence Length = 132575 Score = 42.1 bits (21), Expect = 9.9 Identities = 27/29 (93%) Strand = Plus / Plus Query: 11 ccccccaccccacacacagagacacacat 39 |||||||||||||||||| | |||||||| Sbjct: 99544 ccccccaccccacacacacacacacacat 99572
>gb|AC087063.20| Mus musculus strain C57BL/6J clone rp23-20o47 map 7, complete sequence Length = 241381 Score = 42.1 bits (21), Expect = 9.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 19 cccacacacagagacacacat 39 ||||||||||||||||||||| Sbjct: 21652 cccacacacagagacacacat 21632
>gb|AC107701.8| Mus musculus chromosome 3, clone RP23-49O22, complete sequence Length = 241986 Score = 42.1 bits (21), Expect = 9.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 8 tgtccccccaccccacacacagaga 32 |||| |||||||||||||||||||| Sbjct: 199415 tgtcaccccaccccacacacagaga 199439
>gb|AC124193.2| Mus musculus BAC clone RP23-277F3 from 16, complete sequence Length = 190347 Score = 42.1 bits (21), Expect = 9.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 12 cccccaccccacacacagagacaca 36 ||||||||||||||||||| ||||| Sbjct: 78895 cccccaccccacacacagacacaca 78919
>gb|AC125279.1| Mus musculus BAC clone RP23-433F5 from 8, complete sequence Length = 201197 Score = 42.1 bits (21), Expect = 9.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 19 cccacacacagagacacacat 39 ||||||||||||||||||||| Sbjct: 142782 cccacacacagagacacacat 142802
>gb|AY393998.1| Homo sapiens cytochrome P450, family 1, subfamily B, polypeptide 1 (CYP1B1) gene, complete cds Length = 12124 Score = 42.1 bits (21), Expect = 9.9 Identities = 27/29 (93%) Strand = Plus / Minus Query: 10 tccccccaccccacacacagagacacaca 38 ||||||||||||||||||| | ||||||| Sbjct: 8863 tccccccaccccacacacacatacacaca 8835
>gb|AY131109.1| Yuccaborus frontalis cytochrome oxidase subunit I (COI) gene, partial cds; mitochondrial gene for mitochondrial product Length = 1275 Score = 42.1 bits (21), Expect = 9.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1999 ccctccctgtccttgcaggag 2019 ||||||||||||||||||||| Sbjct: 576 ccctccctgtccttgcaggag 596
>gb|AC157816.4| Mus musculus chromosome 3, clone RP24-255I19, complete sequence Length = 204358 Score = 42.1 bits (21), Expect = 9.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 18 ccccacacacagagacacaca 38 ||||||||||||||||||||| Sbjct: 188555 ccccacacacagagacacaca 188535
>gb|AC068707.7| Homo sapiens chromosome 10 clone RP11-168L22, complete sequence Length = 169414 Score = 42.1 bits (21), Expect = 9.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 19 cccacacacagagacacacat 39 ||||||||||||||||||||| Sbjct: 33820 cccacacacagagacacacat 33800
>dbj|AP006716.1| Staphylococcus haemolyticus JCSC1435 DNA, complete genome Length = 2685015 Score = 42.1 bits (21), Expect = 9.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 2242 gaggaccagctggtggtgacggtgg 2266 |||||||||||||||| |||||||| Sbjct: 1308589 gaggaccagctggtggcgacggtgg 1308613
>gb|AC103758.14| Homo sapiens chromosome 8, clone CTD-3135A9, complete sequence Length = 235357 Score = 42.1 bits (21), Expect = 9.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 21 cacacacagagacacacatgg 41 ||||||||||||||||||||| Sbjct: 107745 cacacacagagacacacatgg 107765
>gb|AC104117.2| Homo sapiens chromosome 5 clone RP11-281O15, complete sequence Length = 211975 Score = 42.1 bits (21), Expect = 9.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 18 ccccacacacagagacacaca 38 ||||||||||||||||||||| Sbjct: 61707 ccccacacacagagacacaca 61687
>ref|NM_000104.2| Homo sapiens cytochrome P450, family 1, subfamily B, polypeptide 1 (CYP1B1), mRNA Length = 5128 Score = 42.1 bits (21), Expect = 9.9 Identities = 27/29 (93%) Strand = Plus / Minus Query: 10 tccccccaccccacacacagagacacaca 38 ||||||||||||||||||| | ||||||| Sbjct: 3814 tccccccaccccacacacacatacacaca 3786
>gb|AF308963.1| Branchinella pinnata cytochrome oxidase subunit I gene, partial cds; mitochondrial gene for mitochondrial product Length = 639 Score = 42.1 bits (21), Expect = 9.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 2001 ctccctgtccttgcaggagct 2021 ||||||||||||||||||||| Sbjct: 529 ctccctgtccttgcaggagct 549
>emb|CR954250.6| Zebrafish DNA sequence from clone DKEY-34G4 in linkage group 8, complete sequence Length = 85279 Score = 42.1 bits (21), Expect = 9.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 746 attgtgatgacagacaaagaaatat 770 ||||||||| ||||||||||||||| Sbjct: 43721 attgtgatgtcagacaaagaaatat 43745
>gb|AC119072.1| Oryza sativa ssp. japonica cv. Nipponbare OSJNBa0073N20 BAC genomic sequence, complete sequence Length = 147289 Score = 42.1 bits (21), Expect = 9.9 Identities = 36/41 (87%) Strand = Plus / Minus Query: 823 tgcttcgagtatatgcctaaagggagtcttgataactatat 863 |||| ||||||| |||||| |||||||||||| || ||||| Sbjct: 20084 tgctacgagtatttgcctacagggagtcttgacaagtatat 20044
>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome Length = 2909809 Score = 42.1 bits (21), Expect = 9.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 2084 tcgcggcgcacgacctcgtcg 2104 ||||||||||||||||||||| Sbjct: 836835 tcgcggcgcacgacctcgtcg 836815
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11 Length = 28386948 Score = 42.1 bits (21), Expect = 9.9 Identities = 36/41 (87%) Strand = Plus / Plus Query: 823 tgcttcgagtatatgcctaaagggagtcttgataactatat 863 |||| ||||||| |||||| |||||||||||| || ||||| Sbjct: 6524146 tgctacgagtatttgcctacagggagtcttgacaagtatat 6524186
>emb|BX883043.1| Rattus norvegicus chromosome 20, major histocompatibility complex, assembled from 40 BACs, strain Brown Norway (BN/ssNHsd), RT1n haplotype; segment 2/11 Length = 347664 Score = 42.1 bits (21), Expect = 9.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 21 cacacacagagacacacatgg 41 ||||||||||||||||||||| Sbjct: 231968 cacacacagagacacacatgg 231948 Score = 42.1 bits (21), Expect = 9.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 21 cacacacagagacacacatgg 41 ||||||||||||||||||||| Sbjct: 232099 cacacacagagacacacatgg 232079
>emb|AL606686.3|OSJN00084 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0070M12, complete sequence Length = 144670 Score = 42.1 bits (21), Expect = 9.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1010 ctgattttggcctgtcaaggt 1030 ||||||||||||||||||||| Sbjct: 61956 ctgattttggcctgtcaaggt 61936
>emb|AL731866.8| Mouse DNA sequence from clone RP23-37F22 on chromosome 11 Contains the 5' end of a variant of the Ccl1 gene for chemokine (C-C motif) ligand 1, complete sequence Length = 105085 Score = 42.1 bits (21), Expect = 9.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 19 cccacacacagagacacacat 39 ||||||||||||||||||||| Sbjct: 59089 cccacacacagagacacacat 59109
>emb|AL669954.6| Mouse DNA sequence from clone RP23-456O18 on chromosome 11 Contains the 3' end of the Rai1 gene for retinoic acid induced 1, the Srebf1 gene for sterol regulatory element binding factor 1, the 3' end of the gene for the likely ortholog of H. sapiens target of myb1-like 2 (chicken) (TOM1L2) (A730055F12Rik), a novel gene and two CpG islands, complete sequence Length = 119279 Score = 42.1 bits (21), Expect = 9.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1038 tgaaaatcaaagccaagtgct 1058 ||||||||||||||||||||| Sbjct: 34377 tgaaaatcaaagccaagtgct 34357
>gb|AC116098.3| Homo sapiens chromosome 3 clone CTD-2329B17, complete sequence Length = 120591 Score = 42.1 bits (21), Expect = 9.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 662 cttatatgcatgaaaaagaat 682 ||||||||||||||||||||| Sbjct: 27110 cttatatgcatgaaaaagaat 27090
>gb|AC009229.5| Homo sapiens BAC clone RP11-314C9 from 2, complete sequence Length = 209156 Score = 42.1 bits (21), Expect = 9.9 Identities = 27/29 (93%) Strand = Plus / Minus Query: 10 tccccccaccccacacacagagacacaca 38 ||||||||||||||||||| | ||||||| Sbjct: 192390 tccccccaccccacacacacatacacaca 192362
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 42.1 bits (21), Expect = 9.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1974 ggtcgacgaggccttcccgga 1994 ||||||||||||||||||||| Sbjct: 8209218 ggtcgacgaggccttcccgga 8209238
>gb|AC096624.23| Mus musculus strain C57BL/6J chromosome 11 clone rp23-326m22, complete sequence Length = 227682 Score = 42.1 bits (21), Expect = 9.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1038 tgaaaatcaaagccaagtgct 1058 ||||||||||||||||||||| Sbjct: 98538 tgaaaatcaaagccaagtgct 98558
>gb|AC135452.2| Homo sapiens 3 BAC RP11-507A10 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 137095 Score = 42.1 bits (21), Expect = 9.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 662 cttatatgcatgaaaaagaat 682 ||||||||||||||||||||| Sbjct: 84534 cttatatgcatgaaaaagaat 84514
>emb|AL773536.21| Mouse DNA sequence from clone RP23-186J20 on chromosome 2, complete sequence Length = 161244 Score = 42.1 bits (21), Expect = 9.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 19 cccacacacagagacacacat 39 ||||||||||||||||||||| Sbjct: 66957 cccacacacagagacacacat 66937
>emb|AL844480.29| Mouse DNA sequence from clone RP23-190B10 on chromosome 4, complete sequence Length = 175199 Score = 42.1 bits (21), Expect = 9.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 21 cacacacagagacacacatgg 41 ||||||||||||||||||||| Sbjct: 119499 cacacacagagacacacatgg 119519
>dbj|AP000465.2| Homo sapiens genomic DNA, chromosome 11q clone:P311, complete sequences Length = 56586 Score = 42.1 bits (21), Expect = 9.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 19 cccacacacagagacacacat 39 ||||||||||||||||||||| Sbjct: 51573 cccacacacagagacacacat 51593
>gb|AC140237.4| Mus musculus BAC clone RP24-279G5 from 3, complete sequence Length = 155999 Score = 42.1 bits (21), Expect = 9.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 8 tgtccccccaccccacacacagaga 32 |||| |||||||||||||||||||| Sbjct: 108298 tgtcaccccaccccacacacagaga 108274
>gb|AY110515.1| Zea mays CL34314_1 mRNA sequence Length = 1060 Score = 42.1 bits (21), Expect = 9.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1967 ccacaaaggtcgacgaggcct 1987 ||||||||||||||||||||| Sbjct: 550 ccacaaaggtcgacgaggcct 570
>gb|AC102236.9| Mus musculus chromosome 7, clone RP24-100O13, complete sequence Length = 212000 Score = 42.1 bits (21), Expect = 9.9 Identities = 27/29 (93%) Strand = Plus / Minus Query: 10 tccccccaccccacacacagagacacaca 38 ||||||||||||||||||| | ||||||| Sbjct: 17987 tccccccaccccacacacacacacacaca 17959
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence Length = 3809201 Score = 42.1 bits (21), Expect = 9.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 2084 tcgcggcgcacgacctcgtcg 2104 ||||||||||||||||||||| Sbjct: 2307508 tcgcggcgcacgacctcgtcg 2307488
>gb|U56438.1|HSU56438 Human dioxin-inducible cytochrome P450 (CYP1B1) gene, complete cds Length = 12177 Score = 42.1 bits (21), Expect = 9.9 Identities = 27/29 (93%) Strand = Plus / Minus Query: 10 tccccccaccccacacacagagacacaca 38 ||||||||||||||||||| | ||||||| Sbjct: 10279 tccccccaccccacacacacatacacaca 10251
>gb|AC133188.4| Mus musculus BAC clone RP23-330F6 from 13, complete sequence Length = 201730 Score = 42.1 bits (21), Expect = 9.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 20 ccacacacagagacacacatg 40 ||||||||||||||||||||| Sbjct: 21353 ccacacacagagacacacatg 21373
>emb|CR956393.14| Pig DNA sequence from clone CH242-163M14 on chromosome 17, complete sequence Length = 195684 Score = 42.1 bits (21), Expect = 9.9 Identities = 27/29 (93%) Strand = Plus / Plus Query: 10 tccccccaccccacacacagagacacaca 38 ||||||||||||||||||| | ||||||| Sbjct: 117543 tccccccaccccacacacacacacacaca 117571
>emb|AL929083.8| Mouse DNA sequence from clone RP23-436E15 on chromosome 2, complete sequence Length = 84875 Score = 42.1 bits (21), Expect = 9.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 22 acacacagagacacacatggc 42 ||||||||||||||||||||| Sbjct: 59531 acacacagagacacacatggc 59511
>emb|AL844897.5| Mouse DNA sequence from clone RP23-284F8 on chromosome X, complete sequence Length = 53970 Score = 42.1 bits (21), Expect = 9.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 657 aaaagcttatatgcatgaaaa 677 ||||||||||||||||||||| Sbjct: 13732 aaaagcttatatgcatgaaaa 13712
>emb|AL662887.13| Mouse DNA sequence from clone RP23-400P17 on chromosome 11, complete sequence Length = 198011 Score = 42.1 bits (21), Expect = 9.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 19 cccacacacagagacacacat 39 ||||||||||||||||||||| Sbjct: 131639 cccacacacagagacacacat 131659
>emb|AL606933.4| Mouse DNA sequence from clone RP23-168M5 on chromosome 4, complete sequence Length = 197552 Score = 42.1 bits (21), Expect = 9.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 20 ccacacacagagacacacatg 40 ||||||||||||||||||||| Sbjct: 106776 ccacacacagagacacacatg 106796
>dbj|AB017654.1| Homo sapiens genomic DNA, chromosome 11q23.2, clone:KB4H11, complete sequence Length = 170965 Score = 42.1 bits (21), Expect = 9.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 19 cccacacacagagacacacat 39 ||||||||||||||||||||| Sbjct: 119393 cccacacacagagacacacat 119373
>gb|U03688.1|HSU03688 Human dioxin-inducible cytochrome P450 (CYP1B1) mRNA, complete cds Length = 5102 Score = 42.1 bits (21), Expect = 9.9 Identities = 27/29 (93%) Strand = Plus / Minus Query: 10 tccccccaccccacacacagagacacaca 38 ||||||||||||||||||| | ||||||| Sbjct: 3788 tccccccaccccacacacacatacacaca 3760
>emb|AL713840.1|CNS07YOU Mus musculus chromosome 11 region in the Om locus area (D11Mit37-Scya6) clone 425A1 of library Caltech CITB-BAC from chromosome 11 of Mus musculus (mouse) Length = 128620 Score = 42.1 bits (21), Expect = 9.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 19 cccacacacagagacacacat 39 ||||||||||||||||||||| Sbjct: 78340 cccacacacagagacacacat 78320 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 418,386,374 Number of extensions: 22285905 Number of successful extensions: 155829 Number of sequences better than 10.0: 93 Number of HSP's gapped: 155823 Number of HSP's successfully gapped: 105 Length of query: 2591 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 2568 Effective length of database: 18,503,978,556 Effective search space: 47518216931808 Effective search space used: 47518216931808 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 15 (30.2 bits)