ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | FLbaf27f09 |
|---|---|
| Clone Library Name | barley_pub |
>LOC_Os01g33230:12001.t02894:unspliced-genomic glycosyltransferase family 28 C-terminal domain containing protein,| expressed Length = 5835 Score = 97.7 bits (207), Expect(2) = 2e-33 Identities = 41/49 (83%), Positives = 44/49 (89%) Frame = +1 / +2 Query: 163 IPLPTIVDDHQTKNAYIMADVMGARVITEDELDSSSLTCIIDEIVGM*H 309 IPLPT+VDDHQTKNAYIMADVMGA+VITEDELDSSSL IIDE+ G H Sbjct: 3989 IPLPTMVDDHQTKNAYIMADVMGAKVITEDELDSSSLRSIIDEVFGTWH 4135 Score = 68.9 bits (144), Expect(2) = 2e-33 Identities = 27/37 (72%), Positives = 33/37 (89%) Frame = +1 / +3 Query: 55 FLHEMYMTYAATDVVVSRAGSVACTEILVTGKPAILI 165 FLHE+ YAA DVVVSRAGS++CTE+LVTGKP+IL+ Sbjct: 2817 FLHELDKAYAAADVVVSRAGSMSCTEVLVTGKPSILV 2927 Score = 94.1 bits (199), Expect(2) = 5e-31 Identities = 40/49 (81%), Positives = 44/49 (89%) Frame = -3 / -1 Query: 308 CHIPTISSIMHVRLLESSSSSVMTLAPMTSAMIYAFFV*WSSTIVGKGI 162 CH+P SSI+ +RLLESSSSSVMT APMTSA+IYAF V*WSSTIVGKGI Sbjct: 4134 CHVPKTSSIIDLRLLESSSSSVMTFAPMTSAIIYAFLV*WSSTIVGKGI 3988 Score = 64.3 bits (134), Expect(2) = 5e-31 Identities = 28/36 (77%), Positives = 29/36 (80%) Frame = -2 / -2 Query: 165 YQNCRFPSD*YLSASHRTSSRNDNISSSICHVHFMQ 58 YQN FPSD Y SA+HRTSSRN NISSSIC V FMQ Sbjct: 2927 YQN*WFPSDQYFSATHRTSSRNYNISSSICFVQFMQ 2820 Score = 83.1 bits (175), Expect(2) = 2e-26 Identities = 34/49 (69%), Positives = 36/49 (73%) Frame = -2 / -3 Query: 309 MSHTNNFINNAC*ATRIKFIFCNDPCSHDICHDICIFRLMVIHNCG*GY 163 M T NFIN TRIKFIFC D CSHDI H+ICIF LMVIH+C *GY Sbjct: 4135 MPRTENFINYRSETTRIKFIFCYDLCSHDISHNICIFGLMVIHHCW*GY 3989 Score = 59.7 bits (124), Expect(2) = 2e-26 Identities = 25/36 (69%), Positives = 28/36 (77%) Frame = -3 / -3 Query: 161 RIAGFPVTNISVQATEPARETTTSVAAYVMYISCKN 54 +I GFPVT+ SVQ EPARETTTS AAY + SCKN Sbjct: 2923 KIDGFPVTSTSVQLIEPARETTTSAAAYALSNSCKN 2816 Score = 80.3 bits (169), Expect(2) = 2e-24 Identities = 36/54 (66%), Positives = 44/54 (81%) Frame = +3 / +1 Query: 156 NSDTLTHNCG*PSNEKCIYHGRCHGSKGHYRR*T*F**PNMHY**NCWYVTSTY 317 +SDTLT+N G*PSN+KCIY+G CHGSKGH RR*T*F** ++ **+ YV S + Sbjct: 3982 SSDTLTNNGG*PSNQKCIYYG*CHGSKGHNRR*T*F**SQIYN**SFRYVASVF 4143 Score = 55.6 bits (115), Expect(2) = 2e-24 Identities = 23/38 (60%), Positives = 24/38 (63%) Frame = +3 / +2 Query: 45 SSTILA*NVHDICCY*CCRFSSWFCGLH*DISHWETGN 158 S +LA* ICC *CC FSSWF LH* HWET N Sbjct: 2807 SLKVLA*IGQSICCC*CCSFSSWFYELH*STGHWETIN 2920 Score = 52.4 bits (108), Expect(3) = 3e-14 Identities = 23/41 (56%), Positives = 27/41 (65%) Frame = -1 / -1 Query: 166 VSELPVSQ*LISQCKPQNQLEKRQHQ*QHMSCTFHARIVEE 44 + +L VSQ* + QC NQLEK QHQ QHM C HAR +E Sbjct: 2928 IPKLMVSQ*PVLQCNS*NQLEKLQHQQQHMLCPIHARTFKE 2806 Score = 39.1 bits (79), Expect(3) = 3e-14 Identities = 15/18 (83%), Positives = 15/18 (83%) Frame = -1 / -2 Query: 211 YMHFSFDGHPQLWVRVSE 158 YMHF FDGHP L VRVSE Sbjct: 4037 YMHFWFDGHPPLLVRVSE 3984 Score = 30.4 bits (60), Expect(3) = 3e-14 Identities = 13/22 (59%), Positives = 16/22 (72%) Frame = -1 / -2 Query: 310 DVTYQQFHQ*CMLGY*NQVHLL 245 D TY++ HQ + Y*NQVHLL Sbjct: 4136 DATYRKLHQL*I*DY*NQVHLL 4071 Score = 73.0 bits (153), Expect(2) = 5e-13 Identities = 33/48 (68%), Positives = 33/48 (68%) Frame = +2 / +3 Query: 158 F*YPYPQLWMTIKRKMHISWQMSWEQGSLQKMNLILVA*HALLMKLLV 301 F YPY Q WMTIK KMHI W MSWEQ S QKMNLILV LMK V Sbjct: 3984 FRYPYQQWWMTIKPKMHILWLMSWEQRS*QKMNLILVVSDL*LMKFSV 4127 Score = 24.4 bits (47), Expect(2) = 5e-13 Identities = 10/14 (71%), Positives = 11/14 (78%) Frame = +2 / +1 Query: 125 ALRY*SLGNRQF*Y 166 AL+Y SLGN QF Y Sbjct: 2887 ALKYWSLGNHQFWY 2928
>LOC_Os04g53830:12004.t04856:unspliced-genomic leucoanthocyanidin reductase, putative, expressed| Length = 3339 Score = 32.7 bits (65), Expect = 1.8 Identities = 11/25 (44%), Positives = 16/25 (64%) Frame = -1 / +2 Query: 76 SCTFHARIVEEIEKQRRPEPSNSYP 2 +C FH R V +++Q RP SN +P Sbjct: 2702 ACPFHGRKVPAVQRQNRPVRSNCWP 2776
>LOC_Os08g42950:12008.t04023:unspliced-genomic HAD-superfamily hydrolase, subfamily IIA, putative, expressed| Length = 2705 Score = 29.0 bits (57), Expect(2) = 2.0 Identities = 14/28 (50%), Positives = 16/28 (57%) Frame = +2 / +3 Query: 221 MSWEQGSLQKMNLILVA*HALLMKLLVC 304 M E+G + NL L A*H L LLVC Sbjct: 309 MDRERGEISTRNLFLCA*HLPLPLLLVC 392 Score = 24.0 bits (46), Expect(2) = 2.0 Identities = 8/13 (61%), Positives = 12/13 (92%) Frame = +3 / +1 Query: 336 IISNIEEAIFIMA 374 ++SN+EEA FI+A Sbjct: 1333 VVSNVEEAEFILA 1371
>LOC_Os02g42040:12002.t03791:unspliced-genomic regulator of nonsense transcripts 2, putative, expressed| Length = 11018 Score = 31.8 bits (63), Expect = 3.3 Identities = 12/20 (60%), Positives = 14/20 (70%) Frame = -3 / -3 Query: 62 CKNSGGDREAEKAGAIQFLP 3 C +GGDRE +AGA QF P Sbjct: 315 CPEAGGDREDGRAGAPQFAP 256
>LOC_Os09g21000:12009.t01834:unspliced-genomic potassium transporter 12, putative, expressed| Length = 4786 Score = 31.3 bits (62), Expect = 4.5 Identities = 12/36 (33%), Positives = 23/36 (63%) Frame = -3 / -3 Query: 320 KVSGCHIPTISSIMHVRLLESSSSSVMTLAPMTSAM 213 K++G HI + H+R + + +S+V+T+ TSA+ Sbjct: 3419 KITGKHITRNKLVCHIRSITNVTSAVLTIITPTSAI 3312
>LOC_Os09g29790:12009.t02657:unspliced-genomic expressed protein| Length = 8110 Score = 31.3 bits (62), Expect = 4.6 Identities = 13/39 (33%), Positives = 21/39 (53%) Frame = +2 / +3 Query: 203 MHISWQMSWEQGSLQKMNLILVA*HALLMKLLVCDIHLL 319 ++++ + W QK +L +A HAL+ VC HLL Sbjct: 6972 LNVAENVLWNMDPYQKSDLYCIALHALVKAKDVCTYHLL 7088
>LOC_Os04g42770:12004.t03823:unspliced-genomic expressed protein| Length = 6314 Score = 31.3 bits (62), Expect = 4.6 Identities = 13/50 (26%), Positives = 26/50 (52%) Frame = -2 / +2 Query: 354 LQCLILSFITHESKWMSHTNNFINNAC*ATRIKFIFCNDPCSHDICHDIC 205 ++ ++L F+T K + N + A R+ F+ C+DP ++ C +C Sbjct: 4976 MRLVLLQFLTRFLKIATVMNLNLQEELPAPRVSFVTCSDP*AYHCCLLLC 5125
>LOC_Os08g28160:12008.t02573:unspliced-genomic hypothetical protein| Length = 1335 Score = 25.8 bits (50), Expect(2) = 4.6 Identities = 7/17 (41%), Positives = 13/17 (76%) Frame = -2 / -1 Query: 234 CSHDICHDICIFRLMVI 184 C+ ICHD+C+ L+++ Sbjct: 168 CN*AICHDLCLVSLVLL 118 Score = 22.6 bits (43), Expect(2) = 4.6 Identities = 7/14 (50%), Positives = 9/14 (64%) Frame = -3 / -2 Query: 80 YVMYISCKNSGGDR 39 Y + +C NSGG R Sbjct: 119 YFPFTTCSNSGGSR 78
>LOC_Os08g31460:12008.t02895:unspliced-genomic tRNA modification GTPase trmE, putative, expressed| Length = 4006 Score = 30.9 bits (61), Expect = 6.3 Identities = 14/35 (40%), Positives = 20/35 (57%) Frame = -2 / -1 Query: 351 QCLILSFITHESKWMSHTNNFINNAC*ATRIKFIF 247 Q +I+S + +SHT NF + C* R +FIF Sbjct: 1675 QLIIISSVQSILNLLSHTINFADQHC*IQRRQFIF 1571
>LOC_Os07g47070:12007.t04343:unspliced-genomic expressed protein| Length = 6516 Score = 30.9 bits (61), Expect = 6.3 Identities = 13/40 (32%), Positives = 20/40 (50%) Frame = -2 / -1 Query: 327 THESKWMSHTNNFINNAC*ATRIKFIFCNDPCSHDICHDI 208 +H K N FI++AC KF +C P IC+++ Sbjct: 447 SHNLKSSRKKNKFIHSACTF*PTKFFYCLHPNFSKICYEL 328
>LOC_Os10g42439:12010.t03469:unspliced-genomic GRV2, putative, expressed| Length = 14615 Score = 30.4 bits (60), Expect = 8.6 Identities = 10/20 (50%), Positives = 13/20 (65%) Frame = +3 / -2 Query: 69 VHDICCY*CCRFSSWFCGLH 128 +H + Y CCRF W CGL+ Sbjct: 8611 MHYVGDYSCCRFICWGCGLN 8552
>LOC_Os08g35870:12008.t03327:unspliced-genomic F-box domain containing protein, expressed| Length = 9449 Score = 30.4 bits (60), Expect = 8.6 Identities = 12/24 (50%), Positives = 15/24 (62%) Frame = -2 / -2 Query: 357 LLQCLILSFITHESKWMSHTNNFI 286 L +CLIL F TH +WM N+ I Sbjct: 3391 LTRCLILLFPTHSLRWMCACNHCI 3320
>LOC_Os01g58860:12001.t05280:unspliced-genomic auxin efflux carrier component 5, putative, expressed| Length = 2797 Score = 30.4 bits (60), Expect = 8.6 Identities = 8/15 (53%), Positives = 12/15 (80%) Frame = -2 / -1 Query: 243 NDPCSHDICHDICIF 199 N PC+HD+C D+ +F Sbjct: 2296 NKPCAHDVCVDLVLF 2252 Database: tigr.seq.out Posted date: Jul 20, 2007 8:58 AM Number of letters in database: 166,841,660 Number of sequences in database: 56,278 Lambda K H 0.318 0.134 0.401 Matrix: BLOSUM62 Number of Sequences: 56278 Number of Hits to DB: 196,824,164 Number of extensions: 3151589 Number of successful extensions: 8881 Number of sequences better than 10.0: 13 Length of query: 162 Length of database: 55,613,886 Length adjustment: 47 Effective length of query: 115 Effective length of database: 52,968,820 Effective search space: 6091414300 Effective search space used: 6091414300 Neighboring words threshold: 13 Window for multiple hits: 40 X1: 16 ( 7.3 bits)
