ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf24e11 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_001066857.1| Oryza sativa (japonica cultivar-group) Os07g0623300 (Os07g0623300) mRNA, complete cds Length = 1230 Score = 488 bits (246), Expect = e-134 Identities = 461/533 (86%), Gaps = 6/533 (1%) Strand = Plus / Plus Query: 96 atgtctcgcttcgggcgctccggcccgccgccgatccgcgacacctactccctcctcgtc 155 ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 112 atgtcgcgcttcggccgctccggcccgccgccgatccgcgacacctactccctcctcgtc 171 Query: 156 ctcaacatcaccttccgtacgacggctgatgaccttttcccgctcttcgacaagtacggc 215 ||||||||||||||||| || ||||| |||||||| | ||| |||||||| ||||||||| Sbjct: 172 ctcaacatcaccttccgcactacggcggatgacctctcccctctcttcgagaagtacggc 231 Query: 216 gaggtcgtcgacatctacatccccagggaccgcaggactggcgactcgcgaggctttgcc 275 ||||||||||||||||||||||| ||||||||||||||||| || |||||||| ||||| Sbjct: 232 gaggtcgtcgacatctacatccctagggaccgcaggactggtgattcgcgagggtttgcg 291 Query: 276 ttcgtgaggtacaagtatgaggacgaggcgcagaaggcagttgatcgcctggacgggagg 335 ||||||||||||||||||||||||||||||||||||||||| ||||| || |||||||| Sbjct: 292 ttcgtgaggtacaagtatgaggacgaggcgcagaaggcagtcgatcggcttgacgggaga 351 Query: 336 ttggtggacgggagggagatgatggtgcagtttgccaagtatggcccaaatgctgagagg 395 |||| || || |||||||| |||||||||||||||||||| ||||| || ||||| | Sbjct: 352 gtggtagatggaagggagatcatggtgcagtttgccaagtacggcccgaacgctgaacga 411 Query: 396 attcagaaagggagaatcatggaaacggtcccgaagccaaggggtcgttccagaagccgc 455 || || ||||| | ||||||||| || || || | | | ||||||||||||||||||||| Sbjct: 412 atccataaaggaaaaatcatggagacagttccaaggtctaggggtcgttccagaagccgc 471 Query: 456 agtccaagacgggggagccgggatgatcatcggggcagagattctagaaggcgaagtcgc 515 ||||||||||||||| ||| ||||| |||||| ||||| | ||||| | || Sbjct: 472 agtccaagacgggggtaccgtgatgactatcgggagagagactatagaaag------cgg 525 Query: 516 agtcggagtggagatagatatggacgtgacaggtacagagagagggatcatcatcgtcgt 575 ||||||||| ||||||||||||||||||||||||| || ||||| ||| ||| ||||||| Sbjct: 526 agtcggagtagagatagatatggacgtgacaggtatagggagagagattatcgtcgtcgt 585 Query: 576 agcaggagtcgtagtgctagtcctgatgattacaagaggcgtggcagagacag 628 |||||||| || || | |||||||||||||| ||| |||||||||||||| Sbjct: 586 agcaggagccgcagctacactcctgatgattacaggagacgtggcagagacag 638 Score = 87.7 bits (44), Expect = 9e-14 Identities = 71/80 (88%) Strand = Plus / Plus Query: 637 gtcgtagcaggagccgcagctacagtcctgttgatgacaggaagggtggcagagacagtt 696 |||||||||||||||||||||||| ||||| |||| |||||| |||||||||||||| Sbjct: 581 gtcgtagcaggagccgcagctacactcctgatgattacaggagacgtggcagagacagtg 640 Query: 697 tgtcgcccgcacgcagaagc 716 |||| || |||||||||||| Sbjct: 641 tgtcacctgcacgcagaagc 660 Score = 63.9 bits (32), Expect = 1e-06 Identities = 47/52 (90%) Strand = Plus / Plus Query: 636 agtcgtagcaggagccgcagctacagtcctgttgatgacaggaagggtggca 687 |||||||||||||| || ||||||||||||| |||| |||||||| |||||| Sbjct: 664 agtcgtagcaggagtcgtagctacagtcctgatgattacaggaagcgtggca 715 Score = 56.0 bits (28), Expect = 3e-04 Identities = 34/36 (94%) Strand = Plus / Plus Query: 708 cgcagaagcactagtcgctctcctcgcaagacacca 743 ||||||||| |||||||||||||||||| ||||||| Sbjct: 835 cgcagaagccctagtcgctctcctcgcaggacacca 870 Score = 54.0 bits (27), Expect = 0.001 Identities = 45/51 (88%) Strand = Plus / Plus Query: 571 gtcgtagcaggagtcgtagtgctagtcctgatgattacaagaggcgtggca 621 ||||||||||||||||||| |||||||||||||||| || |||||||| Sbjct: 665 gtcgtagcaggagtcgtagctacagtcctgatgattacaggaagcgtggca 715 Score = 44.1 bits (22), Expect = 1.2 Identities = 22/22 (100%) Strand = Plus / Plus Query: 1150 acttactataaatggtaatttg 1171 |||||||||||||||||||||| Sbjct: 1205 acttactataaatggtaatttg 1226
>dbj|AK070292.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023050C05, full insert sequence Length = 1231 Score = 488 bits (246), Expect = e-134 Identities = 461/533 (86%), Gaps = 6/533 (1%) Strand = Plus / Plus Query: 96 atgtctcgcttcgggcgctccggcccgccgccgatccgcgacacctactccctcctcgtc 155 ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 113 atgtcgcgcttcggccgctccggcccgccgccgatccgcgacacctactccctcctcgtc 172 Query: 156 ctcaacatcaccttccgtacgacggctgatgaccttttcccgctcttcgacaagtacggc 215 ||||||||||||||||| || ||||| |||||||| | ||| |||||||| ||||||||| Sbjct: 173 ctcaacatcaccttccgcactacggcggatgacctctcccctctcttcgagaagtacggc 232 Query: 216 gaggtcgtcgacatctacatccccagggaccgcaggactggcgactcgcgaggctttgcc 275 ||||||||||||||||||||||| ||||||||||||||||| || |||||||| ||||| Sbjct: 233 gaggtcgtcgacatctacatccctagggaccgcaggactggtgattcgcgagggtttgcg 292 Query: 276 ttcgtgaggtacaagtatgaggacgaggcgcagaaggcagttgatcgcctggacgggagg 335 ||||||||||||||||||||||||||||||||||||||||| ||||| || |||||||| Sbjct: 293 ttcgtgaggtacaagtatgaggacgaggcgcagaaggcagtcgatcggcttgacgggaga 352 Query: 336 ttggtggacgggagggagatgatggtgcagtttgccaagtatggcccaaatgctgagagg 395 |||| || || |||||||| |||||||||||||||||||| ||||| || ||||| | Sbjct: 353 gtggtagatggaagggagatcatggtgcagtttgccaagtacggcccgaacgctgaacga 412 Query: 396 attcagaaagggagaatcatggaaacggtcccgaagccaaggggtcgttccagaagccgc 455 || || ||||| | ||||||||| || || || | | | ||||||||||||||||||||| Sbjct: 413 atccataaaggaaaaatcatggagacagttccaaggtctaggggtcgttccagaagccgc 472 Query: 456 agtccaagacgggggagccgggatgatcatcggggcagagattctagaaggcgaagtcgc 515 ||||||||||||||| ||| ||||| |||||| ||||| | ||||| | || Sbjct: 473 agtccaagacgggggtaccgtgatgactatcgggagagagactatagaaag------cgg 526 Query: 516 agtcggagtggagatagatatggacgtgacaggtacagagagagggatcatcatcgtcgt 575 ||||||||| ||||||||||||||||||||||||| || ||||| ||| ||| ||||||| Sbjct: 527 agtcggagtagagatagatatggacgtgacaggtatagggagagagattatcgtcgtcgt 586 Query: 576 agcaggagtcgtagtgctagtcctgatgattacaagaggcgtggcagagacag 628 |||||||| || || | |||||||||||||| ||| |||||||||||||| Sbjct: 587 agcaggagccgcagctacactcctgatgattacaggagacgtggcagagacag 639 Score = 87.7 bits (44), Expect = 9e-14 Identities = 71/80 (88%) Strand = Plus / Plus Query: 637 gtcgtagcaggagccgcagctacagtcctgttgatgacaggaagggtggcagagacagtt 696 |||||||||||||||||||||||| ||||| |||| |||||| |||||||||||||| Sbjct: 582 gtcgtagcaggagccgcagctacactcctgatgattacaggagacgtggcagagacagtg 641 Query: 697 tgtcgcccgcacgcagaagc 716 |||| || |||||||||||| Sbjct: 642 tgtcacctgcacgcagaagc 661 Score = 63.9 bits (32), Expect = 1e-06 Identities = 47/52 (90%) Strand = Plus / Plus Query: 636 agtcgtagcaggagccgcagctacagtcctgttgatgacaggaagggtggca 687 |||||||||||||| || ||||||||||||| |||| |||||||| |||||| Sbjct: 665 agtcgtagcaggagtcgtagctacagtcctgatgattacaggaagcgtggca 716 Score = 56.0 bits (28), Expect = 3e-04 Identities = 34/36 (94%) Strand = Plus / Plus Query: 708 cgcagaagcactagtcgctctcctcgcaagacacca 743 ||||||||| |||||||||||||||||| ||||||| Sbjct: 836 cgcagaagccctagtcgctctcctcgcaggacacca 871 Score = 54.0 bits (27), Expect = 0.001 Identities = 45/51 (88%) Strand = Plus / Plus Query: 571 gtcgtagcaggagtcgtagtgctagtcctgatgattacaagaggcgtggca 621 ||||||||||||||||||| |||||||||||||||| || |||||||| Sbjct: 666 gtcgtagcaggagtcgtagctacagtcctgatgattacaggaagcgtggca 716 Score = 44.1 bits (22), Expect = 1.2 Identities = 22/22 (100%) Strand = Plus / Plus Query: 1150 acttactataaatggtaatttg 1171 |||||||||||||||||||||| Sbjct: 1206 acttactataaatggtaatttg 1227
>gb|AY109571.1| Zea mays CL3161_1 mRNA sequence Length = 1429 Score = 331 bits (167), Expect = 3e-87 Identities = 293/335 (87%) Strand = Plus / Minus Query: 133 gcgacacctactccctcctcgtcctcaacatcaccttccgtacgacggctgatgaccttt 192 ||||||| ||||| |||||||||||||||||||||||||| || || ||||||||||| | Sbjct: 1388 gcgacacgtactcactcctcgtcctcaacatcaccttccgcacaactgctgatgacctct 1329 Query: 193 tcccgctcttcgacaagtacggcgaggtcgtcgacatctacatccccagggaccgcagga 252 |||| ||||||||||||||||||||| | ||||||||||||||||| ||||||||| ||| Sbjct: 1328 tccctctcttcgacaagtacggcgagattgtcgacatctacatcccaagggaccgccgga 1269 Query: 253 ctggcgactcgcgaggctttgccttcgtgaggtacaagtatgaggacgaggcgcagaagg 312 |||| |||||||| || || || ||||||||||||||||| ||||||||||| ||||||| Sbjct: 1268 ctggtgactcgcgcggattcgcgttcgtgaggtacaagtacgaggacgaggcacagaagg 1209 Query: 313 cagttgatcgcctggacgggaggttggtggacgggagggagatgatggtgcagtttgcca 372 ||||||| | || || ||||| ||||| |||||||||||||| |||||||||||||||| Sbjct: 1208 cagttgaaaggctcgatgggagattggtagacgggagggagatcatggtgcagtttgcca 1149 Query: 373 agtatggcccaaatgctgagaggattcagaaagggagaatcatggaaacggtcccgaagc 432 |||| |||||||||||||| ||||| | ||||||||||| |||| | || || | || Sbjct: 1148 agtacggcccaaatgctgaacggattaataaagggagaatagtggagccagttccaaggc 1089 Query: 433 caaggggtcgttccagaagccgcagtccaagacgg 467 | |||| ||||||||||||||||||||||||||| Sbjct: 1088 ccagggaccgttccagaagccgcagtccaagacgg 1054 Score = 69.9 bits (35), Expect = 2e-08 Identities = 50/55 (90%) Strand = Plus / Minus Query: 840 tctcctgttaggcgcaatgatgagcggtctccaggctctcgtagcccttcaacat 894 |||||||| |||||||||||||| ||||||||| |||| || ||||||||||||| Sbjct: 726 tctcctgtcaggcgcaatgatgaccggtctccacgctcacggagcccttcaacat 672 Score = 65.9 bits (33), Expect = 3e-07 Identities = 63/73 (86%) Strand = Plus / Minus Query: 651 cgcagctacagtcctgttgatgacaggaagggtggcagagacagtttgtcgcccgcacgc 710 |||||||||||||||| |||| ||| |||| |||| |||||||||||||| || ||||| Sbjct: 924 cgcagctacagtcctgatgattacaagaagcgtgggagagacagtttgtctcctgcacga 865 Query: 711 agaagcactagtc 723 | |||| |||||| Sbjct: 864 ataagccctagtc 852 Score = 58.0 bits (29), Expect = 8e-05 Identities = 32/33 (96%) Strand = Plus / Minus Query: 596 tcctgatgattacaagaggcgtggcagagacag 628 |||||||||||||||||||||||||| |||||| Sbjct: 829 tcctgatgattacaagaggcgtggcaaagacag 797 Score = 54.0 bits (27), Expect = 0.001 Identities = 33/35 (94%) Strand = Plus / Minus Query: 594 agtcctgatgattacaagaggcgtggcagagacag 628 ||||||||||||||||||| |||||| |||||||| Sbjct: 915 agtcctgatgattacaagaagcgtgggagagacag 881 Score = 48.1 bits (24), Expect = 0.074 Identities = 30/32 (93%) Strand = Plus / Minus Query: 813 tctcctgttaggcgcaatgatgagcggtctcc 844 |||||||| |||||||||||||| |||||||| Sbjct: 726 tctcctgtcaggcgcaatgatgaccggtctcc 695
>ref|NM_001056798.1| Oryza sativa (japonica cultivar-group) Os03g0388000 (Os03g0388000) mRNA, complete cds Length = 1102 Score = 236 bits (119), Expect = 2e-58 Identities = 266/315 (84%) Strand = Plus / Plus Query: 95 gatgtctcgcttcgggcgctccggcccgccgccgatccgcgacacctactccctcctcgt 154 |||||| ||| |||| |||| |||||| ||| || |||||||| |||||||||||||||| Sbjct: 98 gatgtcgcgcctcggccgctacggcccaccggcggtccgcgactcctactccctcctcgt 157 Query: 155 cctcaacatcaccttccgtacgacggctgatgaccttttcccgctcttcgacaagtacgg 214 ||||||| || ||||||| |||||||| || ||||| || ||||||||||| | ||| Sbjct: 158 cctcaacgtctccttccgcacgacggccgacgacctcctcgcgctcttcgaccgctgcgg 217 Query: 215 cgaggtcgtcgacatctacatccccagggaccgcaggactggcgactcgcgaggctttgc 274 ||||||| |||||||| ||||||| | |||||||||||||| || ||| |||| || || Sbjct: 218 cgaggtcctcgacatccgcatcccccgcgaccgcaggactggggattcgagagggttcgc 277 Query: 275 cttcgtgaggtacaagtatgaggacgaggcgcagaaggcagttgatcgcctggacgggag 334 ||||||||||||||||| |||||||||||||||||||| || ||| || |||||||| Sbjct: 278 gttcgtgaggtacaagtacgaggacgaggcgcagaaggccgtcgataagctcgacgggag 337 Query: 335 gttggtggacgggagggagatgatggtgcagtttgccaagtatggcccaaatgctgagag 394 | |||||| |||||||| || ||||||||||| |||||||| |||||||||||||| || Sbjct: 338 gacggtggatgggagggatatcatggtgcagttcgccaagtacggcccaaatgctgaaag 397 Query: 395 gattcagaaagggag 409 ||||| || ||||| Sbjct: 398 aattcataaggggag 412
>dbj|AK073057.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033020I19, full insert sequence Length = 1103 Score = 220 bits (111), Expect = 9e-54 Identities = 265/315 (84%), Gaps = 1/315 (0%) Strand = Plus / Plus Query: 95 gatgtctcgcttcgggcgctccggcccgccgccgatccgcgacacctactccctcctcgt 154 |||||| ||| |||| |||| |||||| ||| || |||||||| |||||||||||||||| Sbjct: 99 gatgtcgcgcctcggccgctacggcccaccggcggtccgcgactcctactccctcctcgt 158 Query: 155 cctcaacatcaccttccgtacgacggctgatgaccttttcccgctcttcgacaagtacgg 214 ||||||| || ||||||| |||||||| || ||||| || ||||||||||| | ||| Sbjct: 159 cctcaacgtctccttccgcacgacggccgacgacctcctcgcgctcttcgaccgctgcgg 218 Query: 215 cgaggtcgtcgacatctacatccccagggaccgcaggactggcgactcgcgaggctttgc 274 ||||||| |||||||| ||||||| | |||||||||||||| || ||| |||| || || Sbjct: 219 cgaggtcctcgacatccgcatcccccgcgaccgcaggactggggattcgagagggttcgc 278 Query: 275 cttcgtgaggtacaagtatgaggacgaggcgcagaaggcagttgatcgcctggacgggag 334 ||||||||||||||||| |||||||||||||||||||| || ||| || |||||||| Sbjct: 279 gttcgtgaggtacaagtacgaggacgaggcgcagaaggccgtcgataagctcgacgggag 338 Query: 335 gttggtggacgggagggagatgatggtgcagtttgccaagtatggcccaaatgctgagag 394 | |||||| ||||||| || ||||||||||| |||||||| |||||||||||||| || Sbjct: 339 gacggtgga-tggagggatatcatggtgcagttcgccaagtacggcccaaatgctgaaag 397 Query: 395 gattcagaaagggag 409 ||||| || ||||| Sbjct: 398 aattcataaggggag 412
>ref|NM_001068629.1| Oryza sativa (japonica cultivar-group) Os08g0486200 (Os08g0486200) mRNA, complete cds Length = 1386 Score = 151 bits (76), Expect = 7e-33 Identities = 214/260 (82%) Strand = Plus / Plus Query: 129 atccgcgacacctactccctcctcgtcctcaacatcaccttccgtacgacggctgatgac 188 ||||||||||||| ||| ||||||||||||||||||| ||||||||| || || || ||| Sbjct: 145 atccgcgacaccttctcgctcctcgtcctcaacatcagcttccgtaccacagccgacgac 204 Query: 189 cttttcccgctcttcgacaagtacggcgaggtcgtcgacatctacatccccagggaccgc 248 || ||||||||||||||| |||||| ||||||||||| ||| |||||| ||||| || Sbjct: 205 ctcttcccgctcttcgaccgctacggcaaggtcgtcgacgtcttcatcccgagggatcgg 264 Query: 249 aggactggcgactcgcgaggctttgccttcgtgaggtacaagtatgaggacgaggcgcag 308 |||||||| |||||| | || || || |||||| | |||||||| | || ||||||||| Sbjct: 265 aggactggggactcgaggggattcgcgttcgtgcgctacaagtacgctgaagaggcgcag 324 Query: 309 aaggcagttgatcgcctggacgggaggttggtggacgggagggagatgatggtgcagttt 368 ||||| | ||||| || || ||| | ||||| |||||| | || |||||||||||| Sbjct: 325 aaggctatagatcggcttgatgggcgtaatgtggatgggaggaacatcatggtgcagttt 384 Query: 369 gccaagtatggcccaaatgc 388 ||||||||||| || ||||| Sbjct: 385 gccaagtatgggcccaatgc 404
>dbj|AK103676.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033136B19, full insert sequence Length = 1300 Score = 151 bits (76), Expect = 7e-33 Identities = 214/260 (82%) Strand = Plus / Plus Query: 129 atccgcgacacctactccctcctcgtcctcaacatcaccttccgtacgacggctgatgac 188 ||||||||||||| ||| ||||||||||||||||||| ||||||||| || || || ||| Sbjct: 156 atccgcgacaccttctcgctcctcgtcctcaacatcagcttccgtaccacagccgacgac 215 Query: 189 cttttcccgctcttcgacaagtacggcgaggtcgtcgacatctacatccccagggaccgc 248 || ||||||||||||||| |||||| ||||||||||| ||| |||||| ||||| || Sbjct: 216 ctcttcccgctcttcgaccgctacggcaaggtcgtcgacgtcttcatcccgagggatcgg 275 Query: 249 aggactggcgactcgcgaggctttgccttcgtgaggtacaagtatgaggacgaggcgcag 308 |||||||| |||||| | || || || |||||| | |||||||| | || ||||||||| Sbjct: 276 aggactggggactcgaggggattcgcgttcgtgcgctacaagtacgctgaagaggcgcag 335 Query: 309 aaggcagttgatcgcctggacgggaggttggtggacgggagggagatgatggtgcagttt 368 ||||| | ||||| || || ||| | ||||| |||||| | || |||||||||||| Sbjct: 336 aaggctatagatcggcttgatgggcgtaatgtggatgggaggaacatcatggtgcagttt 395 Query: 369 gccaagtatggcccaaatgc 388 ||||||||||| || ||||| Sbjct: 396 gccaagtatgggcccaatgc 415
>dbj|AK064030.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-125-B07, full insert sequence Length = 1386 Score = 151 bits (76), Expect = 7e-33 Identities = 214/260 (82%) Strand = Plus / Plus Query: 129 atccgcgacacctactccctcctcgtcctcaacatcaccttccgtacgacggctgatgac 188 ||||||||||||| ||| ||||||||||||||||||| ||||||||| || || || ||| Sbjct: 145 atccgcgacaccttctcgctcctcgtcctcaacatcagcttccgtaccacagccgacgac 204 Query: 189 cttttcccgctcttcgacaagtacggcgaggtcgtcgacatctacatccccagggaccgc 248 || ||||||||||||||| |||||| ||||||||||| ||| |||||| ||||| || Sbjct: 205 ctcttcccgctcttcgaccgctacggcaaggtcgtcgacgtcttcatcccgagggatcgg 264 Query: 249 aggactggcgactcgcgaggctttgccttcgtgaggtacaagtatgaggacgaggcgcag 308 |||||||| |||||| | || || || |||||| | |||||||| | || ||||||||| Sbjct: 265 aggactggggactcgaggggattcgcgttcgtgcgctacaagtacgctgaagaggcgcag 324 Query: 309 aaggcagttgatcgcctggacgggaggttggtggacgggagggagatgatggtgcagttt 368 ||||| | ||||| || || ||| | ||||| |||||| | || |||||||||||| Sbjct: 325 aaggctatagatcggcttgatgggcgtaatgtggatgggaggaacatcatggtgcagttt 384 Query: 369 gccaagtatggcccaaatgc 388 ||||||||||| || ||||| Sbjct: 385 gccaagtatgggcccaatgc 404
>gb|BT018277.1| Zea mays clone EL01T0203H04.c mRNA sequence Length = 1284 Score = 147 bits (74), Expect = 1e-31 Identities = 215/262 (82%) Strand = Plus / Plus Query: 129 atccgcgacacctactccctcctcgtcctcaacatcaccttccgtacgacggctgatgac 188 ||||||||||||| ||| || |||||||||||||||| |||||| || ||||| || ||| Sbjct: 129 atccgcgacaccttctcgctgctcgtcctcaacatcagcttccgaaccacggccgacgac 188 Query: 189 cttttcccgctcttcgacaagtacggcgaggtcgtcgacatctacatccccagggaccgc 248 ||||||||||||||||| | |||| ||||||||||| ||| |||||| ||||||||| Sbjct: 189 cttttcccgctcttcgagcgctgcggcaaggtcgtcgacgtcttcatcccgagggaccgc 248 Query: 249 aggactggcgactcgcgaggctttgccttcgtgaggtacaagtatgaggacgaggcgcag 308 ||||| || |||||| | || || || |||||| |||||||||| | |||||||||||| Sbjct: 249 aggaccggggactcgaggggtttcgcgttcgtgcggtacaagtacgccgacgaggcgcag 308 Query: 309 aaggcagttgatcgcctggacgggaggttggtggacgggagggagatgatggtgcagttt 368 ||||| | ||||| || ||||| | ||||| || ||| | || |||||||||||| Sbjct: 309 aaggctatagatcggctcgacggccgtaatgtggatggaaggaacatcatggtgcagttt 368 Query: 369 gccaagtatggcccaaatgctg 390 || ||||| ||||| ||||||| Sbjct: 369 gcaaagtacggccccaatgctg 390
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7 Length = 29644043 Score = 139 bits (70), Expect = 3e-29 Identities = 76/78 (97%) Strand = Plus / Plus Query: 96 atgtctcgcttcgggcgctccggcccgccgccgatccgcgacacctactccctcctcgtc 155 ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 25740051 atgtcgcgcttcggccgctccggcccgccgccgatccgcgacacctactccctcctcgtc 25740110 Query: 156 ctcaacatcaccttccgt 173 |||||||||||||||||| Sbjct: 25740111 ctcaacatcaccttccgt 25740128 Score = 109 bits (55), Expect = 2e-20 Identities = 76/83 (91%) Strand = Plus / Plus Query: 249 aggactggcgactcgcgaggctttgccttcgtgaggtacaagtatgaggacgaggcgcag 308 |||||||| || |||||||| ||||| ||||||||||||||||||||||||||||||||| Sbjct: 25740411 aggactggtgattcgcgagggtttgcgttcgtgaggtacaagtatgaggacgaggcgcag 25740470 Query: 309 aaggcagttgatcgcctggacgg 331 |||||||| ||||| || ||||| Sbjct: 25740471 aaggcagtcgatcggcttgacgg 25740493 Score = 105 bits (53), Expect = 4e-19 Identities = 98/113 (86%) Strand = Plus / Plus Query: 516 agtcggagtggagatagatatggacgtgacaggtacagagagagggatcatcatcgtcgt 575 ||||||||| ||||||||||||||||||||||||| || ||||| ||| ||| ||||||| Sbjct: 25742111 agtcggagtagagatagatatggacgtgacaggtatagggagagagattatcgtcgtcgt 25742170 Query: 576 agcaggagtcgtagtgctagtcctgatgattacaagaggcgtggcagagacag 628 |||||||| || || | |||||||||||||| ||| |||||||||||||| Sbjct: 25742171 agcaggagccgcagctacactcctgatgattacaggagacgtggcagagacag 25742223 Score = 101 bits (51), Expect = 6e-18 Identities = 69/75 (92%) Strand = Plus / Plus Query: 177 acggctgatgaccttttcccgctcttcgacaagtacggcgaggtcgtcgacatctacatc 236 ||||| |||||||| | ||| |||||||| |||||||||||||||||||||||||||||| Sbjct: 25740240 acggcggatgacctctcccctctcttcgagaagtacggcgaggtcgtcgacatctacatc 25740299 Query: 237 cccagggaccgcagg 251 || |||||||||||| Sbjct: 25740300 cctagggaccgcagg 25740314 Score = 71.9 bits (36), Expect = 5e-09 Identities = 36/36 (100%) Strand = Plus / Plus Query: 435 aggggtcgttccagaagccgcagtccaagacggggg 470 |||||||||||||||||||||||||||||||||||| Sbjct: 25741585 aggggtcgttccagaagccgcagtccaagacggggg 25741620 Score = 67.9 bits (34), Expect = 8e-08 Identities = 52/58 (89%) Strand = Plus / Plus Query: 637 gtcgtagcaggagccgcagctacagtcctgttgatgacaggaagggtggcagagacag 694 |||||||||||||||||||||||| ||||| |||| |||||| ||||||||||||| Sbjct: 25742166 gtcgtagcaggagccgcagctacactcctgatgattacaggagacgtggcagagacag 25742223 Score = 63.9 bits (32), Expect = 1e-06 Identities = 47/52 (90%) Strand = Plus / Plus Query: 636 agtcgtagcaggagccgcagctacagtcctgttgatgacaggaagggtggca 687 |||||||||||||| || ||||||||||||| |||| |||||||| |||||| Sbjct: 25742334 agtcgtagcaggagtcgtagctacagtcctgatgattacaggaagcgtggca 25742385 Score = 56.0 bits (28), Expect = 3e-04 Identities = 40/44 (90%) Strand = Plus / Plus Query: 348 agggagatgatggtgcagtttgccaagtatggcccaaatgctga 391 |||||||| |||||||||||||||||||| ||||| || ||||| Sbjct: 25740605 agggagatcatggtgcagtttgccaagtacggcccgaacgctga 25740648 Score = 56.0 bits (28), Expect = 3e-04 Identities = 34/36 (94%) Strand = Plus / Plus Query: 708 cgcagaagcactagtcgctctcctcgcaagacacca 743 ||||||||| |||||||||||||||||| ||||||| Sbjct: 25742586 cgcagaagccctagtcgctctcctcgcaggacacca 25742621 Score = 56.0 bits (28), Expect = 3e-04 Identities = 37/40 (92%) Strand = Plus / Plus Query: 1150 acttactataaatggtaatttgcacatttctagttacatg 1189 |||||||||||||||||||||| || ||||||||| |||| Sbjct: 25743041 acttactataaatggtaatttgaacctttctagttccatg 25743080 Score = 54.0 bits (27), Expect = 0.001 Identities = 45/51 (88%) Strand = Plus / Plus Query: 571 gtcgtagcaggagtcgtagtgctagtcctgatgattacaagaggcgtggca 621 ||||||||||||||||||| |||||||||||||||| || |||||||| Sbjct: 25742335 gtcgtagcaggagtcgtagctacagtcctgatgattacaggaagcgtggca 25742385
>dbj|AP004341.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0524E08 Length = 154696 Score = 139 bits (70), Expect = 3e-29 Identities = 76/78 (97%) Strand = Plus / Plus Query: 96 atgtctcgcttcgggcgctccggcccgccgccgatccgcgacacctactccctcctcgtc 155 ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 57213 atgtcgcgcttcggccgctccggcccgccgccgatccgcgacacctactccctcctcgtc 57272 Query: 156 ctcaacatcaccttccgt 173 |||||||||||||||||| Sbjct: 57273 ctcaacatcaccttccgt 57290 Score = 109 bits (55), Expect = 2e-20 Identities = 76/83 (91%) Strand = Plus / Plus Query: 249 aggactggcgactcgcgaggctttgccttcgtgaggtacaagtatgaggacgaggcgcag 308 |||||||| || |||||||| ||||| ||||||||||||||||||||||||||||||||| Sbjct: 57573 aggactggtgattcgcgagggtttgcgttcgtgaggtacaagtatgaggacgaggcgcag 57632 Query: 309 aaggcagttgatcgcctggacgg 331 |||||||| ||||| || ||||| Sbjct: 57633 aaggcagtcgatcggcttgacgg 57655 Score = 105 bits (53), Expect = 4e-19 Identities = 98/113 (86%) Strand = Plus / Plus Query: 516 agtcggagtggagatagatatggacgtgacaggtacagagagagggatcatcatcgtcgt 575 ||||||||| ||||||||||||||||||||||||| || ||||| ||| ||| ||||||| Sbjct: 59273 agtcggagtagagatagatatggacgtgacaggtatagggagagagattatcgtcgtcgt 59332 Query: 576 agcaggagtcgtagtgctagtcctgatgattacaagaggcgtggcagagacag 628 |||||||| || || | |||||||||||||| ||| |||||||||||||| Sbjct: 59333 agcaggagccgcagctacactcctgatgattacaggagacgtggcagagacag 59385 Score = 101 bits (51), Expect = 6e-18 Identities = 69/75 (92%) Strand = Plus / Plus Query: 177 acggctgatgaccttttcccgctcttcgacaagtacggcgaggtcgtcgacatctacatc 236 ||||| |||||||| | ||| |||||||| |||||||||||||||||||||||||||||| Sbjct: 57402 acggcggatgacctctcccctctcttcgagaagtacggcgaggtcgtcgacatctacatc 57461 Query: 237 cccagggaccgcagg 251 || |||||||||||| Sbjct: 57462 cctagggaccgcagg 57476 Score = 71.9 bits (36), Expect = 5e-09 Identities = 36/36 (100%) Strand = Plus / Plus Query: 435 aggggtcgttccagaagccgcagtccaagacggggg 470 |||||||||||||||||||||||||||||||||||| Sbjct: 58747 aggggtcgttccagaagccgcagtccaagacggggg 58782 Score = 67.9 bits (34), Expect = 8e-08 Identities = 52/58 (89%) Strand = Plus / Plus Query: 637 gtcgtagcaggagccgcagctacagtcctgttgatgacaggaagggtggcagagacag 694 |||||||||||||||||||||||| ||||| |||| |||||| ||||||||||||| Sbjct: 59328 gtcgtagcaggagccgcagctacactcctgatgattacaggagacgtggcagagacag 59385 Score = 63.9 bits (32), Expect = 1e-06 Identities = 47/52 (90%) Strand = Plus / Plus Query: 636 agtcgtagcaggagccgcagctacagtcctgttgatgacaggaagggtggca 687 |||||||||||||| || ||||||||||||| |||| |||||||| |||||| Sbjct: 59496 agtcgtagcaggagtcgtagctacagtcctgatgattacaggaagcgtggca 59547 Score = 56.0 bits (28), Expect = 3e-04 Identities = 40/44 (90%) Strand = Plus / Plus Query: 348 agggagatgatggtgcagtttgccaagtatggcccaaatgctga 391 |||||||| |||||||||||||||||||| ||||| || ||||| Sbjct: 57767 agggagatcatggtgcagtttgccaagtacggcccgaacgctga 57810 Score = 56.0 bits (28), Expect = 3e-04 Identities = 34/36 (94%) Strand = Plus / Plus Query: 708 cgcagaagcactagtcgctctcctcgcaagacacca 743 ||||||||| |||||||||||||||||| ||||||| Sbjct: 59748 cgcagaagccctagtcgctctcctcgcaggacacca 59783 Score = 56.0 bits (28), Expect = 3e-04 Identities = 37/40 (92%) Strand = Plus / Plus Query: 1150 acttactataaatggtaatttgcacatttctagttacatg 1189 |||||||||||||||||||||| || ||||||||| |||| Sbjct: 60203 acttactataaatggtaatttgaacctttctagttccatg 60242 Score = 54.0 bits (27), Expect = 0.001 Identities = 45/51 (88%) Strand = Plus / Plus Query: 571 gtcgtagcaggagtcgtagtgctagtcctgatgattacaagaggcgtggca 621 ||||||||||||||||||| |||||||||||||||| || |||||||| Sbjct: 59497 gtcgtagcaggagtcgtagctacagtcctgatgattacaggaagcgtggca 59547
>emb|CT834265.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA119O06, full insert sequence Length = 1222 Score = 135 bits (68), Expect = 4e-28 Identities = 213/260 (81%), Gaps = 1/260 (0%) Strand = Plus / Plus Query: 129 atccgcgacacctactccctcctcgtcctcaacatcaccttccgtacgacggctgatgac 188 ||||||||||||| ||| ||||||||||||||||||| ||||| ||| || || || ||| Sbjct: 154 atccgcgacaccttctcgctcctcgtcctcaacatcagcttcc-taccacagccgacgac 212 Query: 189 cttttcccgctcttcgacaagtacggcgaggtcgtcgacatctacatccccagggaccgc 248 || ||||||||||||||| |||||| ||||||||||| ||| |||||| ||||| || Sbjct: 213 ctcttcccgctcttcgaccgctacggcaaggtcgtcgacgtcttcatcccgagggatcgg 272 Query: 249 aggactggcgactcgcgaggctttgccttcgtgaggtacaagtatgaggacgaggcgcag 308 |||||||| |||||| | || || || |||||| | |||||||| | || ||||||||| Sbjct: 273 aggactggggactcgaggggattcgcgttcgtgcgctacaagtacgctgaagaggcgcag 332 Query: 309 aaggcagttgatcgcctggacgggaggttggtggacgggagggagatgatggtgcagttt 368 ||||| | ||||| || || ||| | ||||| |||||| | || |||||||||||| Sbjct: 333 aaggctatagatcggcttgatgggcgtaatgtggatgggaggaacatcatggtgcagttt 392 Query: 369 gccaagtatggcccaaatgc 388 ||||||||||| || ||||| Sbjct: 393 gccaagtatgggcccaatgc 412
>gb|DQ245644.1| Zea mays clone 18665 mRNA sequence Length = 976 Score = 127 bits (64), Expect = 1e-25 Identities = 175/212 (82%) Strand = Plus / Plus Query: 95 gatgtctcgcttcgggcgctccggcccgccgccgatccgcgacacctactccctcctcgt 154 |||||| ||||||||||||||||| | |||| || |||||| | | |||||||||||| Sbjct: 28 gatgtcgcgcttcgggcgctccgggcagccggagaaccgcgaatctttctccctcctcgt 87 Query: 155 cctcaacatcaccttccgtacgacggctgatgaccttttcccgctcttcgacaagtacgg 214 ||||||| || ||||||| || |||||||| || || |||||||||||||| ||||| Sbjct: 88 cctcaacgtctccttccgcactacggctgacgatctcttcccgctcttcgatcgatacgg 147 Query: 215 cgaggtcgtcgacatctacatccccagggaccgcaggactggcgactcgcgaggctttgc 274 | ||||| | |||||||||||||| | |||| ||||||||| || ||||||| || || Sbjct: 148 caaggtcttagacatctacatcccgcgcgaccacaggactggggatccgcgagggttcgc 207 Query: 275 cttcgtgaggtacaagtatgaggacgaggcgc 306 |||||||||||||| || ||||| ||||||| Sbjct: 208 gttcgtgaggtacaattacgaggatgaggcgc 239 Score = 58.0 bits (29), Expect = 8e-05 Identities = 35/37 (94%) Strand = Plus / Plus Query: 429 aagccaaggggtcgttccagaagccgcagtccaagac 465 ||||||||||||| || |||||||||||||||||||| Sbjct: 362 aagccaaggggtcattgcagaagccgcagtccaagac 398
>gb|AY112393.1| Zea mays CL14390_1 mRNA sequence Length = 903 Score = 89.7 bits (45), Expect = 2e-14 Identities = 160/197 (81%), Gaps = 1/197 (0%) Strand = Plus / Minus Query: 102 cgcttcgggcgctccggcccgccgccgatccgcgacacctactccctcctcgtcctcaac 161 ||||||||||||||||| | |||| || |||||| | | |||| |||||||||||||| Sbjct: 902 cgcttcgggcgctccgggcagccggagaaccgcgaatctttctccatcctcgtcctcaac 843 Query: 162 atcaccttccgtacgacggctgatgaccttttcccgctcttcgacaagtacggcgaggtc 221 || ||||||| || |||||||| || || |||||||||||||| |||||| ||||| Sbjct: 842 gtctccttccgcactacggctgacgatctcttcccgctcttcgatcgctacggcaaggtc 783 Query: 222 gtcgacatctacatccccagggaccgcaggactggcgactcgcgaggctttgccttcgtg 281 | ||||||||||||| | |||| ||||||||| || ||||||| || || |||||| Sbjct: 782 -ttaacatctacatcccgcgcgaccacaggactggggatccgcgagggttcgcgttcgtg 724 Query: 282 aggtacaagtatgagga 298 |||||||| || ||||| Sbjct: 723 aggtacaattacgagga 707 Score = 65.9 bits (33), Expect = 3e-07 Identities = 36/37 (97%) Strand = Plus / Minus Query: 429 aagccaaggggtcgttccagaagccgcagtccaagac 465 |||||||||||||||| |||||||||||||||||||| Sbjct: 577 aagccaaggggtcgttgcagaagccgcagtccaagac 541
>gb|AC103551.7| Oryza sativa chromosome 3 BAC OSJNBb0058G04 genomic sequence, complete sequence Length = 137709 Score = 79.8 bits (40), Expect = 2e-11 Identities = 70/80 (87%) Strand = Plus / Plus Query: 95 gatgtctcgcttcgggcgctccggcccgccgccgatccgcgacacctactccctcctcgt 154 |||||| ||| |||| |||| |||||| ||| || |||||||| |||||||||||||||| Sbjct: 20991 gatgtcgcgcctcggccgctacggcccaccggcggtccgcgactcctactccctcctcgt 21050 Query: 155 cctcaacatcaccttccgta 174 ||||||| || ||||||||| Sbjct: 21051 cctcaacgtctccttccgta 21070 Score = 77.8 bits (39), Expect = 8e-11 Identities = 60/67 (89%) Strand = Plus / Plus Query: 247 gcaggactggcgactcgcgaggctttgccttcgtgaggtacaagtatgaggacgaggcgc 306 |||||||||| || ||| |||| || || ||||||||||||||||| ||||||||||||| Sbjct: 21350 gcaggactggggattcgagagggttcgcgttcgtgaggtacaagtacgaggacgaggcgc 21409 Query: 307 agaaggc 313 ||||||| Sbjct: 21410 agaaggc 21416 Score = 67.9 bits (34), Expect = 8e-08 Identities = 49/54 (90%) Strand = Plus / Plus Query: 338 ggtggacgggagggagatgatggtgcagtttgccaagtatggcccaaatgctga 391 |||||| |||||||| || ||||||||||| |||||||| |||||||||||||| Sbjct: 21552 ggtggatgggagggatatcatggtgcagttcgccaagtacggcccaaatgctga 21605 Score = 44.1 bits (22), Expect = 1.2 Identities = 64/78 (82%) Strand = Plus / Plus Query: 174 acgacggctgatgaccttttcccgctcttcgacaagtacggcgaggtcgtcgacatctac 233 |||||||| || ||||| || ||||||||||| | |||||||||| |||||||| | Sbjct: 21170 acgacggccgacgacctcctcgcgctcttcgaccgctgcggcgaggtcctcgacatccgc 21229 Query: 234 atccccagggaccgcagg 251 |||||| | ||||||||| Sbjct: 21230 atcccccgcgaccgcagg 21247
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3 Length = 36192742 Score = 79.8 bits (40), Expect = 2e-11 Identities = 70/80 (87%) Strand = Plus / Minus Query: 95 gatgtctcgcttcgggcgctccggcccgccgccgatccgcgacacctactccctcctcgt 154 |||||| ||| |||| |||| |||||| ||| || |||||||| |||||||||||||||| Sbjct: 15310891 gatgtcgcgcctcggccgctacggcccaccggcggtccgcgactcctactccctcctcgt 15310832 Query: 155 cctcaacatcaccttccgta 174 ||||||| || ||||||||| Sbjct: 15310831 cctcaacgtctccttccgta 15310812 Score = 77.8 bits (39), Expect = 8e-11 Identities = 60/67 (89%) Strand = Plus / Minus Query: 247 gcaggactggcgactcgcgaggctttgccttcgtgaggtacaagtatgaggacgaggcgc 306 |||||||||| || ||| |||| || || ||||||||||||||||| ||||||||||||| Sbjct: 15310532 gcaggactggggattcgagagggttcgcgttcgtgaggtacaagtacgaggacgaggcgc 15310473 Query: 307 agaaggc 313 ||||||| Sbjct: 15310472 agaaggc 15310466 Score = 67.9 bits (34), Expect = 8e-08 Identities = 49/54 (90%) Strand = Plus / Minus Query: 338 ggtggacgggagggagatgatggtgcagtttgccaagtatggcccaaatgctga 391 |||||| |||||||| || ||||||||||| |||||||| |||||||||||||| Sbjct: 15310330 ggtggatgggagggatatcatggtgcagttcgccaagtacggcccaaatgctga 15310277 Score = 44.1 bits (22), Expect = 1.2 Identities = 64/78 (82%) Strand = Plus / Minus Query: 174 acgacggctgatgaccttttcccgctcttcgacaagtacggcgaggtcgtcgacatctac 233 |||||||| || ||||| || ||||||||||| | |||||||||| |||||||| | Sbjct: 15310712 acgacggccgacgacctcctcgcgctcttcgaccgctgcggcgaggtcctcgacatccgc 15310653 Query: 234 atccccagggaccgcagg 251 |||||| | ||||||||| Sbjct: 15310652 atcccccgcgaccgcagg 15310635
>ref|NM_125816.2| Arabidopsis thaliana ATSC35; RNA binding / nucleic acid binding (ATSC35) mRNA, complete cds Length = 1266 Score = 77.8 bits (39), Expect = 8e-11 Identities = 51/55 (92%) Strand = Plus / Plus Query: 133 gcgacacctactccctcctcgtcctcaacatcaccttccgtacgacggctgatga 187 ||||||||||||| || |||||||| |||||||||||||||||||| |||||||| Sbjct: 117 gcgacacctactcacttctcgtccttaacatcaccttccgtacgactgctgatga 171
>ref|NM_180930.2| Arabidopsis thaliana ATSC35; RNA binding / nucleic acid binding (ATSC35) mRNA, complete cds Length = 2084 Score = 77.8 bits (39), Expect = 8e-11 Identities = 51/55 (92%) Strand = Plus / Plus Query: 133 gcgacacctactccctcctcgtcctcaacatcaccttccgtacgacggctgatga 187 ||||||||||||| || |||||||| |||||||||||||||||||| |||||||| Sbjct: 117 gcgacacctactcacttctcgtccttaacatcaccttccgtacgactgctgatga 171
>gb|AY143851.1| Arabidopsis thaliana At5g64200/MSJ1_4 mRNA, complete cds Length = 912 Score = 77.8 bits (39), Expect = 8e-11 Identities = 51/55 (92%) Strand = Plus / Plus Query: 133 gcgacacctactccctcctcgtcctcaacatcaccttccgtacgacggctgatga 187 ||||||||||||| || |||||||| |||||||||||||||||||| |||||||| Sbjct: 38 gcgacacctactcacttctcgtccttaacatcaccttccgtacgactgctgatga 92
>gb|AY122917.1| Arabidopsis thaliana unknown protein (At5g64200) mRNA, complete cds Length = 943 Score = 77.8 bits (39), Expect = 8e-11 Identities = 51/55 (92%) Strand = Plus / Plus Query: 133 gcgacacctactccctcctcgtcctcaacatcaccttccgtacgacggctgatga 187 ||||||||||||| || |||||||| |||||||||||||||||||| |||||||| Sbjct: 38 gcgacacctactcacttctcgtccttaacatcaccttccgtacgactgctgatga 92
>gb|AY063890.1| Arabidopsis thaliana unknown protein (At5g64200) mRNA, complete cds Length = 1410 Score = 77.8 bits (39), Expect = 8e-11 Identities = 51/55 (92%) Strand = Plus / Plus Query: 133 gcgacacctactccctcctcgtcctcaacatcaccttccgtacgacggctgatga 187 ||||||||||||| || |||||||| |||||||||||||||||||| |||||||| Sbjct: 97 gcgacacctactcacttctcgtccttaacatcaccttccgtacgactgctgatga 151
>gb|AY127004.1| Arabidopsis thaliana AT5g64200/MSJ1_4 mRNA, complete cds Length = 1265 Score = 77.8 bits (39), Expect = 8e-11 Identities = 51/55 (92%) Strand = Plus / Plus Query: 133 gcgacacctactccctcctcgtcctcaacatcaccttccgtacgacggctgatga 187 ||||||||||||| || |||||||| |||||||||||||||||||| |||||||| Sbjct: 115 gcgacacctactcacttctcgtccttaacatcaccttccgtacgactgctgatga 169
>emb|AJ293796.1|ATH293796 Arabidopsis thaliana mRNA for splicing factor SC35 Length = 1304 Score = 77.8 bits (39), Expect = 8e-11 Identities = 51/55 (92%) Strand = Plus / Plus Query: 133 gcgacacctactccctcctcgtcctcaacatcaccttccgtacgacggctgatga 187 ||||||||||||| || |||||||| |||||||||||||||||||| |||||||| Sbjct: 142 gcgacacctactcacttctcgtccttaacatcaccttccgtacgactgctgatga 196
>emb|BX831258.1|CNS0A0P4 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS72ZC08 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1356 Score = 77.8 bits (39), Expect = 8e-11 Identities = 51/55 (92%) Strand = Plus / Plus Query: 133 gcgacacctactccctcctcgtcctcaacatcaccttccgtacgacggctgatga 187 ||||||||||||| || |||||||| |||||||||||||||||||| |||||||| Sbjct: 101 gcgacacctactcacttctcgtccttaacatcaccttccgtacgactgctgatga 155
>emb|BX829515.1|CNS0A1FM Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB18ZF11 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1172 Score = 77.8 bits (39), Expect = 8e-11 Identities = 51/55 (92%) Strand = Plus / Plus Query: 133 gcgacacctactccctcctcgtcctcaacatcaccttccgtacgacggctgatga 187 ||||||||||||| || |||||||| |||||||||||||||||||| |||||||| Sbjct: 77 gcgacacctactcacttctcgtccttaacatcaccttccgtacgactgctgatga 131
>emb|BX829660.1|CNS0A184 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB28ZC08 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1259 Score = 77.8 bits (39), Expect = 8e-11 Identities = 51/55 (92%) Strand = Plus / Plus Query: 133 gcgacacctactccctcctcgtcctcaacatcaccttccgtacgacggctgatga 187 ||||||||||||| || |||||||| |||||||||||||||||||| |||||||| Sbjct: 75 gcgacacctactcacttctcgtccttaacatcaccttccgtacgactgctgatga 129
>emb|BX831685.1|CNS0A0ZJ Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH23ZF12 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1419 Score = 77.8 bits (39), Expect = 8e-11 Identities = 51/55 (92%) Strand = Plus / Plus Query: 133 gcgacacctactccctcctcgtcctcaacatcaccttccgtacgacggctgatga 187 ||||||||||||| || |||||||| |||||||||||||||||||| |||||||| Sbjct: 89 gcgacacctactcacttctcgtccttaacatcaccttccgtacgactgctgatga 143
>dbj|AP006102.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT16B11, TM0182, complete sequence Length = 80583 Score = 73.8 bits (37), Expect = 1e-09 Identities = 40/41 (97%) Strand = Plus / Plus Query: 134 cgacacctactccctcctcgtcctcaacatcaccttccgta 174 ||||||||||||||||||||| ||||||||||||||||||| Sbjct: 40246 cgacacctactccctcctcgttctcaacatcaccttccgta 40286 Score = 46.1 bits (23), Expect = 0.29 Identities = 32/35 (91%) Strand = Plus / Plus Query: 363 cagtttgccaagtatggcccaaatgctgagaggat 397 |||||||| |||||||| || |||||||||||||| Sbjct: 40775 cagtttgctaagtatgggcctaatgctgagaggat 40809
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8 Length = 28434780 Score = 65.9 bits (33), Expect = 3e-07 Identities = 42/45 (93%) Strand = Plus / Minus Query: 129 atccgcgacacctactccctcctcgtcctcaacatcaccttccgt 173 ||||||||||||| ||| ||||||||||||||||||| ||||||| Sbjct: 24035906 atccgcgacaccttctcgctcctcgtcctcaacatcagcttccgt 24035862 Score = 54.0 bits (27), Expect = 0.001 Identities = 51/59 (86%) Strand = Plus / Minus Query: 186 gaccttttcccgctcttcgacaagtacggcgaggtcgtcgacatctacatccccaggga 244 ||||| ||||||||||||||| |||||| ||||||||||| ||| |||||| ||||| Sbjct: 24035755 gacctcttcccgctcttcgaccgctacggcaaggtcgtcgacgtcttcatcccgaggga 24035697 Score = 52.0 bits (26), Expect = 0.005 Identities = 44/50 (88%) Strand = Plus / Minus Query: 339 gtggacgggagggagatgatggtgcagtttgccaagtatggcccaaatgc 388 ||||| |||||| | || ||||||||||||||||||||||| || ||||| Sbjct: 24035413 gtggatgggaggaacatcatggtgcagtttgccaagtatgggcccaatgc 24035364
>dbj|AP004376.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0481F05 Length = 139739 Score = 65.9 bits (33), Expect = 3e-07 Identities = 42/45 (93%) Strand = Plus / Minus Query: 129 atccgcgacacctactccctcctcgtcctcaacatcaccttccgt 173 ||||||||||||| ||| ||||||||||||||||||| ||||||| Sbjct: 63306 atccgcgacaccttctcgctcctcgtcctcaacatcagcttccgt 63262 Score = 54.0 bits (27), Expect = 0.001 Identities = 51/59 (86%) Strand = Plus / Minus Query: 186 gaccttttcccgctcttcgacaagtacggcgaggtcgtcgacatctacatccccaggga 244 ||||| ||||||||||||||| |||||| ||||||||||| ||| |||||| ||||| Sbjct: 63155 gacctcttcccgctcttcgaccgctacggcaaggtcgtcgacgtcttcatcccgaggga 63097 Score = 52.0 bits (26), Expect = 0.005 Identities = 44/50 (88%) Strand = Plus / Minus Query: 339 gtggacgggagggagatgatggtgcagtttgccaagtatggcccaaatgc 388 ||||| |||||| | || ||||||||||||||||||||||| || ||||| Sbjct: 62813 gtggatgggaggaacatcatggtgcagtttgccaagtatgggcccaatgc 62764
>emb|Y16672.1|MSY16672 Medicago sativa mRNA for putative arginine/serine-rich splicing factor, (sclp gene) Length = 1304 Score = 63.9 bits (32), Expect = 1e-06 Identities = 41/44 (93%) Strand = Plus / Plus Query: 363 cagtttgccaagtatggcccaaatgctgagaggattcagaaagg 406 |||||||| || |||||||| ||||||||||||||||||||||| Sbjct: 289 cagtttgcaaaatatggccctaatgctgagaggattcagaaagg 332 Score = 54.0 bits (27), Expect = 0.001 Identities = 84/103 (81%) Strand = Plus / Plus Query: 138 acctactccctcctcgtcctcaacatcaccttccgtacgacggctgatgaccttttcccg 197 |||||||| ||||| || ||||||||||||||||| || || || |||||||| || ||| Sbjct: 64 acctactctctccttgttctcaacatcaccttccgcaccaccgccgatgacctatttccg 123 Query: 198 ctcttcgacaagtacggcgaggtcgtcgacatctacatcccca 240 | || || ||||| ||| |||| || ||||||| ||||||| Sbjct: 124 ttgtttgataagtatggcaaggttgttgacatctttatcccca 166 Score = 42.1 bits (21), Expect = 4.6 Identities = 42/49 (85%) Strand = Plus / Plus Query: 552 agagagagggatcatcatcgtcgtagcaggagtcgtagtgctagtcctg 600 ||||| ||||| |||| ||| || ||||| || |||||||||||||||| Sbjct: 484 agagatagggaccatcgtcgccgaagcagaagccgtagtgctagtcctg 532
>emb|CT983233.1| partial cDNA sequence from a Lambda ZAP II normalized full-length cDNA library of differentiating xylem from Eucalyptus gunnii Length = 156 Score = 60.0 bits (30), Expect = 2e-05 Identities = 36/38 (94%) Strand = Plus / Plus Query: 276 ttcgtgaggtacaagtatgaggacgaggcgcagaaggc 313 ||||||||||||||||| | |||||||||||||||||| Sbjct: 39 ttcgtgaggtacaagtacgcggacgaggcgcagaaggc 76
>dbj|AB008268.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MSJ1 Length = 83594 Score = 60.0 bits (30), Expect = 2e-05 Identities = 39/42 (92%) Strand = Plus / Minus Query: 133 gcgacacctactccctcctcgtcctcaacatcaccttccgta 174 ||||||||||||| || |||||||| |||||||||||||||| Sbjct: 8300 gcgacacctactcacttctcgtccttaacatcaccttccgta 8259
>gb|AC150704.34| Medicago truncatula clone mth2-131h23, complete sequence Length = 115199 Score = 56.0 bits (28), Expect = 3e-04 Identities = 37/40 (92%) Strand = Plus / Minus Query: 135 gacacctactccctcctcgtcctcaacatcaccttccgta 174 ||||||||||| |||||||| ||||||||||| ||||||| Sbjct: 52565 gacacctactctctcctcgttctcaacatcactttccgta 52526 Score = 48.1 bits (24), Expect = 0.074 Identities = 30/32 (93%) Strand = Plus / Minus Query: 363 cagtttgccaagtatggcccaaatgctgagag 394 |||||||| ||||||||||| ||||||||||| Sbjct: 51801 cagtttgcaaagtatggccctaatgctgagag 51770
>gb|AC144459.8| Medicago truncatula clone mth2-23o13, complete sequence Length = 114098 Score = 56.0 bits (28), Expect = 3e-04 Identities = 37/40 (92%) Strand = Plus / Plus Query: 135 gacacctactccctcctcgtcctcaacatcaccttccgta 174 ||||||||||| |||||||| ||||||||||| ||||||| Sbjct: 86966 gacacctactctctcctcgttctcaacatcactttccgta 87005 Score = 48.1 bits (24), Expect = 0.074 Identities = 30/32 (93%) Strand = Plus / Plus Query: 363 cagtttgccaagtatggcccaaatgctgagag 394 |||||||| ||||||||||| ||||||||||| Sbjct: 87730 cagtttgcaaagtatggccctaatgctgagag 87761
>gb|BT013952.1| Lycopersicon esculentum clone 132975F, mRNA sequence Length = 1991 Score = 54.0 bits (27), Expect = 0.001 Identities = 60/71 (84%) Strand = Plus / Plus Query: 141 tactccctcctcgtcctcaacatcaccttccgtacgacggctgatgaccttttcccgctc 200 ||||| |||||||| ||||||||||| |||||||| |||| ||||| || || || || Sbjct: 117 tactctctcctcgtactcaacatcactttccgtacctcggcggatgatctctttcctctt 176 Query: 201 ttcgacaagta 211 ||||||||||| Sbjct: 177 ttcgacaagta 187
>gb|DQ117037.1| Fragaria vesca clone CFVCT030 microsatellite sequence Length = 291 Score = 52.0 bits (26), Expect = 0.005 Identities = 32/34 (94%) Strand = Plus / Minus Query: 141 tactccctcctcgtcctcaacatcaccttccgta 174 ||||| |||||||||||||||||| ||||||||| Sbjct: 291 tactctctcctcgtcctcaacatctccttccgta 258
>ref|NM_001063418.1| Oryza sativa (japonica cultivar-group) Os06g0161100 (Os06g0161100) mRNA, complete cds Length = 906 Score = 48.1 bits (24), Expect = 0.074 Identities = 24/24 (100%) Strand = Plus / Plus Query: 60 gcccccagcgccgcctcctgctcc 83 |||||||||||||||||||||||| Sbjct: 152 gcccccagcgccgcctcctgctcc 175
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6 Length = 30731886 Score = 48.1 bits (24), Expect = 0.074 Identities = 24/24 (100%) Strand = Plus / Plus Query: 60 gcccccagcgccgcctcctgctcc 83 |||||||||||||||||||||||| Sbjct: 3093061 gcccccagcgccgcctcctgctcc 3093084 Score = 44.1 bits (22), Expect = 1.2 Identities = 25/26 (96%) Strand = Plus / Minus Query: 57 ctcgcccccagcgccgcctcctgctc 82 |||| ||||||||||||||||||||| Sbjct: 19582496 ctcgaccccagcgccgcctcctgctc 19582471
>dbj|AB026295.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, clone:P0681F10 Length = 170371 Score = 48.1 bits (24), Expect = 0.074 Identities = 24/24 (100%) Strand = Plus / Plus Query: 60 gcccccagcgccgcctcctgctcc 83 |||||||||||||||||||||||| Sbjct: 47246 gcccccagcgccgcctcctgctcc 47269
>gb|DQ235162.1| Solanum tuberosum clone 153C04 unknown mRNA Length = 1069 Score = 46.1 bits (23), Expect = 0.29 Identities = 41/47 (87%) Strand = Plus / Plus Query: 366 tttgccaagtatggcccaaatgctgagaggattcagaaagggagaat 412 ||||| ||||| ||||||||||||||||| ||| | ||||| ||||| Sbjct: 320 tttgcgaagtacggcccaaatgctgagagaattgacaaaggtagaat 366
>gb|DQ228318.1| Solanum tuberosum clone 130D03 mRNA sequence Length = 1064 Score = 46.1 bits (23), Expect = 0.29 Identities = 41/47 (87%) Strand = Plus / Plus Query: 366 tttgccaagtatggcccaaatgctgagaggattcagaaagggagaat 412 ||||| ||||| ||||||||||||||||| ||| | ||||| ||||| Sbjct: 316 tttgcgaagtacggcccaaatgctgagagaattgacaaaggtagaat 362
>dbj|AK018992.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched library, clone:1700127F24 product:unclassifiable, full insert sequence Length = 600 Score = 46.1 bits (23), Expect = 0.29 Identities = 23/23 (100%) Strand = Plus / Minus Query: 949 gctgctcagttgctttatcatga 971 ||||||||||||||||||||||| Sbjct: 459 gctgctcagttgctttatcatga 437
>gb|AC160929.2| Mus musculus BAC clone RP24-380G7 from chromosome 12, complete sequence Length = 163333 Score = 46.1 bits (23), Expect = 0.29 Identities = 23/23 (100%) Strand = Plus / Plus Query: 949 gctgctcagttgctttatcatga 971 ||||||||||||||||||||||| Sbjct: 71650 gctgctcagttgctttatcatga 71672
>gb|AC126039.3| Mus musculus BAC clone RP24-234N22 from 12, complete sequence Length = 154037 Score = 46.1 bits (23), Expect = 0.29 Identities = 23/23 (100%) Strand = Plus / Minus Query: 949 gctgctcagttgctttatcatga 971 ||||||||||||||||||||||| Sbjct: 11608 gctgctcagttgctttatcatga 11586
>dbj|AP004794.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0506C10 Length = 150549 Score = 44.1 bits (22), Expect = 1.2 Identities = 25/26 (96%) Strand = Plus / Minus Query: 57 ctcgcccccagcgccgcctcctgctc 82 |||| ||||||||||||||||||||| Sbjct: 64228 ctcgaccccagcgccgcctcctgctc 64203
>ref|XM_314825.2| Anopheles gambiae str. PEST ENSANGP00000011098 (ENSANGG00000008609), partial mRNA Length = 5397 Score = 44.1 bits (22), Expect = 1.2 Identities = 22/22 (100%) Strand = Plus / Minus Query: 54 ccgctcgcccccagcgccgcct 75 |||||||||||||||||||||| Sbjct: 1520 ccgctcgcccccagcgccgcct 1499
>ref|XM_001221107.1| Chaetomium globosum CBS 148.51 hypothetical protein (CHGG_01887) mRNA, complete cds Length = 6432 Score = 42.1 bits (21), Expect = 4.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 202 tcgacaagtacggcgaggtcg 222 ||||||||||||||||||||| Sbjct: 6260 tcgacaagtacggcgaggtcg 6280
>ref|NM_001074867.1| Oryza sativa (japonica cultivar-group) Os11g0637700 (Os11g0637700) mRNA, complete cds Length = 2312 Score = 42.1 bits (21), Expect = 4.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 200 cttcgacaagtacggcgaggt 220 ||||||||||||||||||||| Sbjct: 292 cttcgacaagtacggcgaggt 312
>gb|AC125782.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0095P22, complete sequence Length = 162766 Score = 42.1 bits (21), Expect = 4.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 200 cttcgacaagtacggcgaggt 220 ||||||||||||||||||||| Sbjct: 138955 cttcgacaagtacggcgaggt 138975
>gb|AC145349.1| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0096I10, complete sequence Length = 171946 Score = 42.1 bits (21), Expect = 4.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 200 cttcgacaagtacggcgaggt 220 ||||||||||||||||||||| Sbjct: 71143 cttcgacaagtacggcgaggt 71123
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11 Length = 28386948 Score = 42.1 bits (21), Expect = 4.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 200 cttcgacaagtacggcgaggt 220 ||||||||||||||||||||| Sbjct: 24337846 cttcgacaagtacggcgaggt 24337866
>gb|AC090771.4| Homo sapiens chromosome 18, clone RP11-795H16, complete sequence Length = 186031 Score = 42.1 bits (21), Expect = 4.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 952 gctcagttgctttatcatgaa 972 ||||||||||||||||||||| Sbjct: 65754 gctcagttgctttatcatgaa 65734
>emb|AL157392.18| Human DNA sequence from clone RP11-295P9 on chromosome 10 Contains the PRPF18 gene for PRP18 pre-mRNA processing factor 18 homolog (yeast), a ribosomal protein L6 (RPL6)(TAXREB107) pseudogene, two novel genes, the 5' end of a novel gene, the 3' end of the gene for a novel protein (FLJ10210) and two CpG islands, complete sequence Length = 178908 Score = 42.1 bits (21), Expect = 4.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 384 aatgctgagaggattcagaaa 404 ||||||||||||||||||||| Sbjct: 77291 aatgctgagaggattcagaaa 77271
>emb|AL137790.4| Human DNA sequence from clone RP5-1003J2 on chromosome 1p12-13.3 Contains 3' end of the gene LOC284462, the KCNC4 gene for a potassium voltage-gated channel from the Shaw-related subfamily member 4, the 3' end of a novel transcript and a CpG island, complete sequence Length = 127409 Score = 42.1 bits (21), Expect = 4.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 952 gctcagttgctttatcatgaa 972 ||||||||||||||||||||| Sbjct: 107085 gctcagttgctttatcatgaa 107105
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 42.1 bits (21), Expect = 4.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 64 ccagcgccgcctcctgctccg 84 ||||||||||||||||||||| Sbjct: 2762025 ccagcgccgcctcctgctccg 2762045
>gb|AC105452.3| Homo sapiens BAC clone RP11-122J10 from 4, complete sequence Length = 154634 Score = 42.1 bits (21), Expect = 4.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 983 ttacaaattaaaaatgttgtg 1003 ||||||||||||||||||||| Sbjct: 129181 ttacaaattaaaaatgttgtg 129201
>gb|AC009243.3|AC009243 Genomic sequence for Arabidopsis thaliana BAC F28K19 from chromosome I, complete sequence Length = 110565 Score = 42.1 bits (21), Expect = 4.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 982 gttacaaattaaaaatgttgt 1002 ||||||||||||||||||||| Sbjct: 31837 gttacaaattaaaaatgttgt 31857
>dbj|AK105751.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-202-B11, full insert sequence Length = 2313 Score = 42.1 bits (21), Expect = 4.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 200 cttcgacaagtacggcgaggt 220 ||||||||||||||||||||| Sbjct: 372 cttcgacaagtacggcgaggt 392
>emb|BX833715.1|CNS0A0GM Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL72ZF03 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1170 Score = 42.1 bits (21), Expect = 4.6 Identities = 30/33 (90%) Strand = Plus / Plus Query: 154 tcctcaacatcaccttccgtacgacggctgatg 186 |||| ||||| |||||||||||||| ||||||| Sbjct: 113 tccttaacattaccttccgtacgactgctgatg 145
>dbj|AK071789.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023110H14, full insert sequence Length = 1006 Score = 42.1 bits (21), Expect = 4.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 200 cttcgacaagtacggcgaggt 220 ||||||||||||||||||||| Sbjct: 278 cttcgacaagtacggcgaggt 298
>dbj|AK070544.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023056G11, full insert sequence Length = 2315 Score = 42.1 bits (21), Expect = 4.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 200 cttcgacaagtacggcgaggt 220 ||||||||||||||||||||| Sbjct: 295 cttcgacaagtacggcgaggt 315
>emb|CR382130.1| Yarrowia lipolytica chromosome D of strain CLIB122 of Yarrowia lipolytica Length = 3633272 Score = 42.1 bits (21), Expect = 4.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 985 acaaattaaaaatgttgtggt 1005 ||||||||||||||||||||| Sbjct: 1928047 acaaattaaaaatgttgtggt 1928067
>emb|AL928962.9| Mouse DNA sequence from clone RP23-455A4 on chromosome 2, complete sequence Length = 172286 Score = 42.1 bits (21), Expect = 4.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 383 aaatgctgagaggattcagaa 403 ||||||||||||||||||||| Sbjct: 52568 aaatgctgagaggattcagaa 52588 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 180,771,036 Number of extensions: 9510218 Number of successful extensions: 199960 Number of sequences better than 10.0: 64 Number of HSP's gapped: 199948 Number of HSP's successfully gapped: 130 Length of query: 1202 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 1179 Effective length of database: 18,503,978,556 Effective search space: 21816190717524 Effective search space used: 21816190717524 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)
