Clone Information

BLAST Search Result

Clone Name	FLbaf27c21
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	AK111286:Os05g0465000	61	7e-10
2	AK062470:Os05g0464300	55	4e-08
3	AK105333:	31	0.58
4	AK071929:Os01g0827300	31	0.58
5	AK105731:Os01g0558500	31	0.77
6	AK099982:Os01g0558500	31	0.77
7	Os02g0208100:Os02g0208100	30	1.3
8	AK102610:Os01g0647100	30	1.7
9	AK069624:Os01g0647100	30	1.7
10	AK102095:Os05g0552900	29	2.2
11	AK073536:Os01g0329800	29	2.2
12	AB059237:Os01g0329800	29	2.2
13	Os01g0653100:Os01g0653100	29	2.9
14	AK072020:Os07g0562400	29	2.9
15	Os02g0236500:Os02g0236500	29	2.9
16	AK104335:Os01g0954400	29	2.9
17	AK065709:Os01g0954400	29	2.9
18	AK062595:Os09g0547500	29	2.9
19	Os01g0330600:Os01g0330600	28	3.8
20	Os02g0762800:Os02g0762800	28	3.8
21	AK110022:	28	5.0
22	AK108059:Os12g0162800	28	5.0
23	AK106161:Os08g0533600	28	5.0
24	AK098885:Os08g0533600	28	5.0
25	AK061731:Os08g0533600	28	5.0
26	Os02g0768700:Os02g0768700	28	6.5
27	AK102216:Os01g0142800	28	6.5
28	Os04g0374000:Os04g0374000	27	8.4
29	Os03g0257600:Os03g0257600	27	8.5
30	AK110062:	27	8.5
31	AK072516:Os08g0516900	27	8.5

>AK111286:Os05g0465000 |
          Length = 80
 Score = 60.8 bits (146), Expect = 7e-10
 Identities = 36/72 (50%), Positives = 45/72 (62%)
 Frame = +1

Query: 70  HSYSNSGVGISNYGSSKERRPPLKRGQLKRQIVRTISNLMAPRNDGAGADKRASARTSFG 249
           +SY        ++ S KE+RPPLKRGQLKRQIVRT+SNLMAP    +G D  A+A +   
Sbjct: 8   YSYYQQYKSSGSFISGKEKRPPLKRGQLKRQIVRTLSNLMAPATRSSG-DAAAAADSKKK 66

Query: 250 TYN*SSRRRRVS 285
             + SS RR  S
Sbjct: 67  AADRSSFRREAS 78

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>AK062470:Os05g0464300 |
          Length = 74

 Score = 55.1 bits (131), Expect = 4e-08
 Identities = 30/60 (50%), Positives = 41/60 (68%)
 Frame = +1

Query: 64  MEHSYSNSGVGISNYGSSKERRPPLKRGQLKRQIVRTISNLMAPRNDGAGADKRASARTS 243
           ME+SY  + +       +KE+RPPLKRGQ+KR+IVR+ISNLMA  N+ A  D   SA+ +
Sbjct: 1   MEYSYYGNYLSGGGANMAKEKRPPLKRGQVKRRIVRSISNLMA--NNAAADDDSNSAQAA 58

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>AK105333: |
          Length = 448

 Score = 31.2 bits (69), Expect = 0.58
 Identities = 21/58 (36%), Positives = 29/58 (50%)
 Frame = -3

Query: 452 PLYPSVQSDYRGTLYSRRTPRKKNHYIWNSLPATKYAVLKS*SGLKQEASVRVIVSDT 279
           P YP VQ DY     ++  PR    Y+W  +PATK   LK  S       V++++ DT
Sbjct: 298 PAYPPVQFDYT----AQNVPR----YLWQPVPATKLYKLKFGS------VVQIVLQDT 341

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>AK071929:Os01g0827300 |
          Length = 567

 Score = 31.2 bits (69), Expect = 0.58
 Identities = 21/58 (36%), Positives = 29/58 (50%)
 Frame = -3

Query: 452 PLYPSVQSDYRGTLYSRRTPRKKNHYIWNSLPATKYAVLKS*SGLKQEASVRVIVSDT 279
           P YP VQ DY     ++  PR    Y+W  +PATK   LK  S       V++++ DT
Sbjct: 417 PAYPPVQFDYT----AQNVPR----YLWQPVPATKLYKLKFGS------VVQIVLQDT 460

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>AK105731:Os01g0558500 |
          Length = 595

 Score = 30.8 bits (68), Expect = 0.77
 Identities = 17/59 (28%), Positives = 28/59 (47%)
 Frame = +1

Query: 34  KARSNTERRAMEHSYSNSGVGISNYGSSKERRPPLKRGQLKRQIVRTISNLMAPRNDGA 210
           +ARS+   R       +    IS + + K RRP  K+     + +R +S+  + R DGA
Sbjct: 497 QARSSHSSRPASRPKPSGKKKISEHDTDKSRRPHTKKSATSPRKMRRLSSFASSRRDGA 555

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>AK099982:Os01g0558500 |
          Length = 774

 Score = 30.8 bits (68), Expect = 0.77
 Identities = 17/59 (28%), Positives = 28/59 (47%)
 Frame = +1

Query: 34  KARSNTERRAMEHSYSNSGVGISNYGSSKERRPPLKRGQLKRQIVRTISNLMAPRNDGA 210
           +ARS+   R       +    IS + + K RRP  K+     + +R +S+  + R DGA
Sbjct: 676 QARSSHSSRPASRPKPSGKKKISEHDTDKSRRPHTKKSATSPRKMRRLSSFASSRRDGA 734

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>Os02g0208100:Os02g0208100 |
          Length = 640

 Score = 30.0 bits (66), Expect = 1.3
 Identities = 14/27 (51%), Positives = 18/27 (66%)
 Frame = -3

Query: 233 ADALLSAPAPSFLGAMRLLMVLTICRF 153
           AD LL+A  PSFLG + +L V + C F
Sbjct: 200 ADRLLAALGPSFLGPVAILRVWSFCLF 226

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>AK102610:Os01g0647100 |
          Length = 642

 Score = 29.6 bits (65), Expect = 1.7
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = -3

Query: 233 ADALLSAPAPSFLGAMRLLMVLTICRF 153
           AD LL+A  PSFLG + +L + + C F
Sbjct: 221 ADKLLAALGPSFLGPVAILRIWSFCLF 247

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>AK069624:Os01g0647100 |
          Length = 642

 Score = 29.6 bits (65), Expect = 1.7
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = -3

Query: 233 ADALLSAPAPSFLGAMRLLMVLTICRF 153
           AD LL+A  PSFLG + +L + + C F
Sbjct: 221 ADKLLAALGPSFLGPVAILRIWSFCLF 247

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>AK102095:Os05g0552900 |
          Length = 662

 Score = 29.3 bits (64), Expect = 2.2
 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = -2

Query: 411 VQSENTEEEEPLYMEQSPSYQVRSTKKLIRSEARGVR-ASDRIRHSAPSRAS 259
           +Q +   E+E LY  +  S +  STKK+ R+   GV+     I HS   RA+
Sbjct: 475 LQDQRKAEQEALYGSKPSSSKSHSTKKVPRNSTPGVQPPKSEILHSKTIRAT 526

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>AK073536:Os01g0329800 |
          Length = 708

 Score = 29.3 bits (64), Expect = 2.2
 Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
 Frame = -2

Query: 381 PLYMEQSPSYQVRSTKKLIRSEARGVRASDRIRHSAPSRASVVGAE--AGASRRPLIRAR 208
           P+Y+   PSY V ST   + S       +D I  + P ++++V ++     +  P ++ R
Sbjct: 138 PVYVPTLPSYTVTSTNHALPSVPPVATKNDVIA-NPPIQSTIVTSKQFLDHASDPKVQLR 196

Query: 207 AVVPRRHEVADG 172
             +P + E+ADG
Sbjct: 197 NPIPLKKELADG 208

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>AB059237:Os01g0329800 |
          Length = 708

 Score = 29.3 bits (64), Expect = 2.2
 Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
 Frame = -2

Query: 381 PLYMEQSPSYQVRSTKKLIRSEARGVRASDRIRHSAPSRASVVGAE--AGASRRPLIRAR 208
           P+Y+   PSY V ST   + S       +D I  + P ++++V ++     +  P ++ R
Sbjct: 138 PVYVPTLPSYTVTSTNHALPSVPPVATKNDVIA-NPPIQSTIVTSKQFLDHASDPKVQLR 196

Query: 207 AVVPRRHEVADG 172
             +P + E+ADG
Sbjct: 197 NPIPLKKELADG 208

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>Os01g0653100:Os01g0653100 |
          Length = 393

 Score = 28.9 bits (63), Expect = 2.9
 Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 7/68 (10%)
 Frame = +3

Query: 387 LPRCSPTVQSPPIVRLY------RWIERLC*FSYVIYSPAVADLQYSCFLHNA-IIWLTQ 545
           L R   + +SP + +LY      +W  R+  F YVI+S A    + S F  N  ++  + 
Sbjct: 179 LVRTEESAESPGVFKLYLDEPDCKWFARVARFDYVIFSGANWFTRPSLFYENGRLVGGSY 238

Query: 546 IALCRTHD 569
           +AL  T D
Sbjct: 239 VALNITSD 246

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>AK072020:Os07g0562400 |
          Length = 534

 Score = 28.9 bits (63), Expect = 2.9
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -3

Query: 410 YSRRTPRKKNHYIWNSLPATKYAVL 336
           Y+ R    +N Y+W SLP+  YAVL
Sbjct: 236 YTLREASWRNMYVWTSLPSLCYAVL 260

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>Os02g0236500:Os02g0236500 |
          Length = 1084

 Score = 28.9 bits (63), Expect = 2.9
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = -2

Query: 303  RASDRIRHSAPSRASVVGAEAGASR-RPLIRARAVVPRRH 187
            RA    RHSAP+R +V+   +   R  P+   R+  PRRH
Sbjct: 978  RACRPCRHSAPNRPAVIAVISACPRLSPVSPLRSKPPRRH 1017

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>AK104335:Os01g0954400 |
          Length = 280

 Score = 28.9 bits (63), Expect = 2.9
 Identities = 20/60 (33%), Positives = 29/60 (48%)
 Frame = -2

Query: 402 ENTEEEEPLYMEQSPSYQVRSTKKLIRSEARGVRASDRIRHSAPSRASVVGAEAGASRRP 223
           E+  +EE  YM +SPS ++ + +       RG R   R      SR S+   +AG SR P
Sbjct: 157 EDDLDEEAYYMSRSPSIRIGNRRWGDNGYVRGGRKEAR----PVSRQSLNDTDAGPSRTP 212

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>AK065709:Os01g0954400 |
          Length = 280

 Score = 28.9 bits (63), Expect = 2.9
 Identities = 20/60 (33%), Positives = 29/60 (48%)
 Frame = -2

Query: 402 ENTEEEEPLYMEQSPSYQVRSTKKLIRSEARGVRASDRIRHSAPSRASVVGAEAGASRRP 223
           E+  +EE  YM +SPS ++ + +       RG R   R      SR S+   +AG SR P
Sbjct: 157 EDDLDEEAYYMSRSPSIRIGNRRWGDNGYVRGGRKEAR----PVSRQSLNDTDAGPSRTP 212

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>AK062595:Os09g0547500 |
          Length = 250

 Score = 28.9 bits (63), Expect = 2.9
 Identities = 18/56 (32%), Positives = 26/56 (46%)
 Frame = -2

Query: 360 PSYQVRSTKKLIRSEARGVRASDRIRHSAPSRASVVGAEAGASRRPLIRARAVVPR 193
           P  ++R  + L R +ARGVRA   +    P  A     +  A  RP  R + + PR
Sbjct: 181 PPLRLRPRRPLPRPQARGVRAG--VAGGRPGDAQAALGDRAAGSRPGRRLQLLAPR 234

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>Os01g0330600:Os01g0330600 |
          Length = 759

 Score = 28.5 bits (62), Expect = 3.8
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -3

Query: 410 YSRRTPRKKNHYIWNSLPATKYAVL 336
           Y+ R    +N Y+W SLP+  YAVL
Sbjct: 234 YTFREASWRNMYVWTSLPSLCYAVL 258

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>Os02g0762800:Os02g0762800 |
          Length = 912

 Score = 28.5 bits (62), Expect = 3.8
 Identities = 19/51 (37%), Positives = 27/51 (52%)
 Frame = -2

Query: 327 IRSEARGVRASDRIRHSAPSRASVVGAEAGASRRPLIRARAVVPRRHEVAD 175
           +RS  RGVRA+DR R S    A V G         ++R + ++PR   V+D
Sbjct: 90  VRSACRGVRANDRERKSQNVDALVRG-------NLVVRRQPLIPRILSVSD 133

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>AK110022: |
          Length = 895

 Score = 28.1 bits (61), Expect = 5.0
 Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 10/43 (23%)
 Frame = -2

Query: 363 SPSYQVRSTKKLIRSEA----------RGVRASDRIRHSAPSR 265
           SP++  R  KKL  S A          RG+R +D IR  AP R
Sbjct: 398 SPAHATRRAKKLSASPAPHKLAYPQRLRGIRGTDPIRSPAPDR 440

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>AK108059:Os12g0162800 |
          Length = 329

 Score = 28.1 bits (61), Expect = 5.0
 Identities = 24/83 (28%), Positives = 35/83 (42%), Gaps = 4/83 (4%)
 Frame = -2

Query: 402 ENTEEEEPLYMEQSPSYQVRSTKK--LIRSEARGVRASDRIRHSAPSRASVV--GAEAGA 235
           E T  + PL  +     Q+R T +  L+R        + +  HS   R + V  G     
Sbjct: 158 EATRHQRPLRRQGHRLLQLRRTSRQALLREPV-----TPKTNHSPRRRRTRVWNGRRLRL 212

Query: 234 SRRPLIRARAVVPRRHEVADGPH 166
            RR L+  RA   R H+ A+ PH
Sbjct: 213 QRRALLLRRAHTSRHHDSANPPH 235

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>AK106161:Os08g0533600 |
          Length = 463

 Score = 28.1 bits (61), Expect = 5.0
 Identities = 14/50 (28%), Positives = 22/50 (44%)
 Frame = +1

Query: 133 PLKRGQLKRQIVRTISNLMAPRNDGAGADKRASARTSFGTYN*SSRRRRV 282
           P++ G    Q+   + N+M    DG G  ++ S   S G  N   R  R+
Sbjct: 183 PVRDGGRLSQLQELLGNVMQGDGDGGGDSRKGSTAVSLGAANAERRLHRL 232

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>AK098885:Os08g0533600 |
          Length = 463

 Score = 28.1 bits (61), Expect = 5.0
 Identities = 14/50 (28%), Positives = 22/50 (44%)
 Frame = +1

Query: 133 PLKRGQLKRQIVRTISNLMAPRNDGAGADKRASARTSFGTYN*SSRRRRV 282
           P++ G    Q+   + N+M    DG G  ++ S   S G  N   R  R+
Sbjct: 183 PVRDGGRLSQLQELLGNVMQGDGDGGGDSRKGSTAVSLGAANAERRLHRL 232

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>AK061731:Os08g0533600 |
          Length = 463

 Score = 28.1 bits (61), Expect = 5.0
 Identities = 14/50 (28%), Positives = 22/50 (44%)
 Frame = +1

Query: 133 PLKRGQLKRQIVRTISNLMAPRNDGAGADKRASARTSFGTYN*SSRRRRV 282
           P++ G    Q+   + N+M    DG G  ++ S   S G  N   R  R+
Sbjct: 183 PVRDGGRLSQLQELLGNVMQGDGDGGGDSRKGSTAVSLGAANAERRLHRL 232

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>Os02g0768700:Os02g0768700 |
          Length = 284

 Score = 27.7 bits (60), Expect = 6.5
 Identities = 20/46 (43%), Positives = 23/46 (50%)
 Frame = -2

Query: 345 RSTKKLIRSEARGVRASDRIRHSAPSRASVVGAEAGASRRPLIRAR 208
           RS+KK  RS     RA D  RH AP+ +    A A AS R   R R
Sbjct: 14  RSSKK--RSSRPKPRAGDAARHPAPNPSPPPAAAAPASSRSRERER 57

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>AK102216:Os01g0142800 |
          Length = 510

 Score = 27.7 bits (60), Expect = 6.5
 Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = +1

Query: 124 RRPPLKRGQLKRQIVRTISNLMAPRNDGAGADK-RASARTSFGTYN*SSRRRRVS 285
           R P  + G+ +RQ++R  + + AP   G  AD+ RA AR           RRRV+
Sbjct: 130 RHPGRRHGRRRRQLLRRHAAVQAPAARGQPADEDRAGARRVGEEVGRRGPRRRVA 184

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>Os04g0374000:Os04g0374000 |
          Length = 567

 Score = 27.3 bits (59), Expect = 8.4
 Identities = 10/21 (47%), Positives = 17/21 (80%)
 Frame = +3

Query: 252 LQLKLETAPSVGYDHSHGRLL 314
           L++K+E + ++G DHSHG +L
Sbjct: 229 LKVKVEASKNLGQDHSHGPVL 249

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>Os03g0257600:Os03g0257600 |
          Length = 568

 Score = 27.3 bits (59), Expect = 8.5
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = -2

Query: 264 ASVVGAEAGASRRPLIRARAVVPRRHEVADGPH 166
           AS +GA AGA R PL+   ++ P+R +  D P+
Sbjct: 441 ASELGAGAGAPREPLV---SLAPQRGQYRDPPY 470

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>AK110062: |
          Length = 998

 Score = 27.3 bits (59), Expect = 8.5
 Identities = 19/66 (28%), Positives = 29/66 (43%)
 Frame = -2

Query: 393 EEEEPLYMEQSPSYQVRSTKKLIRSEARGVRASDRIRHSAPSRASVVGAEAGASRRPLIR 214
           EEEE    E++   + R   + +R  A    A DR+    P  A+ VG++A A      R
Sbjct: 690 EEEEKEAAEEARRREER-LNEAVRLAAERKAAQDRLEGLTPDSAAAVGSDAAAGSLMQRR 748

Query: 213 ARAVVP 196
            +   P
Sbjct: 749 RKKAAP 754

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>AK072516:Os08g0516900 |
          Length = 261

 Score = 27.3 bits (59), Expect = 8.5
 Identities = 29/103 (28%), Positives = 44/103 (42%), Gaps = 8/103 (7%)
 Frame = +1

Query: 31  EKARSNTERRAMEHSYSNSGVGISNYG----SSKERRPPLKRGQLKRQIVRTISNLMAPR 198
           E+     E +A E +    G G+  +G     S E   P+KRG         +SN  A +
Sbjct: 78  EEEGEEVESKAKEVAVEVEGGGLGFHGLGTLESLEDALPIKRG---------LSNFYAGK 128

Query: 199 NDG----AGADKRASARTSFGTYN*SSRRRRVSDTITRTDASC 315
           +      A A  +A+A+      N  ++RRRV    +R  ASC
Sbjct: 129 SKSFTSLAEAAAKAAAKEIAKPENPFNKRRRVLAAWSRRRASC 171


  Database: orf_amino.fa.out
    Posted date:  Jul 26, 2007 11:37 AM
  Number of letters in database: 15,399,855
  Number of sequences in database:  40,041
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 40041
Number of Hits to DB: 14,605,135
Number of extensions: 296588
Number of successful extensions: 1046
Number of sequences better than 10.0: 31
Number of HSP's gapped: 1044
Number of HSP's successfully gapped: 31
Length of query: 208
Length of database: 15,399,855
Length adjustment: 96
Effective length of query: 112
Effective length of database: 11,555,919
Effective search space: 1294262928
Effective search space used: 1294262928
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result