>Q60878:OL140_MOUSE Olfactory receptor 140 - Mus musculus (Mouse)|
          Length = 302
 Score = 33.5 bits (75), Expect = 0.64
 Identities = 20/64 (31%), Positives = 33/64 (51%)
 Frame = +3

Query: 372 YIVVLLPRCSPTVQSPPIVRLYRWIERLC*FSYVIYSPAVADLQYSCFLHNAIIWLTQIA 551
           ++V+ LP C P V +  +  LY  +E  C  +YVI    VA+    C L+  ++  + I 
Sbjct: 159 FLVLQLPFCGPNVINHFVCDLYPLLELACTDTYVIGLLVVANSGVICLLNFLMLAASYIV 218

Query: 552 LCRT 563
           + RT
Sbjct: 219 ILRT 222

>P0A602:RPOD_MYCTU RNA polymerase sigma factor rpoD - Mycobacterium tuberculosis|
          Length = 528

 Score = 32.3 bits (72), Expect = 1.4
 Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 5/66 (7%)
 Frame = -2

Query: 345 RSTKKLIRSEARGVRASDRIRHSAPSRASVVGAEAGASRRPLIRARAVVPR-----RHEV 181
           R+TK   RS        D    + P R +   A++ A++ P  R  A  PR     +HE 
Sbjct: 49  RATKPAARSVKPASAPQDTTTSTIPKRKTRAAAKSAAAKAPSARGHATKPRAPKDAQHEA 108

Query: 180 ADGPHD 163
           A  P D
Sbjct: 109 ATDPED 114

>P0A603:RPOD_MYCBO RNA polymerase sigma factor rpoD - Mycobacterium bovis|
          Length = 528

 Score = 32.3 bits (72), Expect = 1.4
 Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 5/66 (7%)
 Frame = -2

Query: 345 RSTKKLIRSEARGVRASDRIRHSAPSRASVVGAEAGASRRPLIRARAVVPR-----RHEV 181
           R+TK   RS        D    + P R +   A++ A++ P  R  A  PR     +HE 
Sbjct: 49  RATKPAARSVKPASAPQDTTTSTIPKRKTRAAAKSAAAKAPSARGHATKPRAPKDAQHEA 108

Query: 180 ADGPHD 163
           A  P D
Sbjct: 109 ATDPED 114

>Q9P2K5:MYEF2_HUMAN Myelin expression factor 2 - Homo sapiens (Human)|
          Length = 600

 Score = 32.3 bits (72), Expect = 1.4
 Identities = 18/66 (27%), Positives = 30/66 (45%)
 Frame = +1

Query: 25  KREKARSNTERRAMEHSYSNSGVGISNYGSSKERRPPLKRGQLKRQIVRTISNLMAPRND 204
           +RE   +  E++  +HS S++GV + N  S+KE +  LK      +           +N 
Sbjct: 30  RREPHPAEAEKQQPQHSSSSNGVKMENDESAKEEKSDLKEKSTGSKKANRFHPYSKDKNS 89

Query: 205 GAGADK 222
           G G  K
Sbjct: 90  GTGEKK 95

>Q941X2:LAC3_ORYSJ Laccase-3 precursor - Oryza sativa subsp. japonica (Rice)|
          Length = 567

 Score = 31.2 bits (69), Expect = 3.2
 Identities = 21/58 (36%), Positives = 29/58 (50%)
 Frame = -3

Query: 452 PLYPSVQSDYRGTLYSRRTPRKKNHYIWNSLPATKYAVLKS*SGLKQEASVRVIVSDT 279
           P YP VQ DY     ++  PR    Y+W  +PATK   LK  S       V++++ DT
Sbjct: 417 PAYPPVQFDYT----AQNVPR----YLWQPVPATKLYKLKFGS------VVQIVLQDT 460

>P43659:SSRP_ENTHR SsrA-binding protein - Enterococcus hirae|
          Length = 154

 Score = 30.8 bits (68), Expect = 4.2
 Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 11/71 (15%)
 Frame = +1

Query: 4   TRHTHTHKREKARSNTERRA-----------MEHSYSNSGVGISNYGSSKERRPPLKRGQ 150
           TR    HK++ +R  TE +            +   Y+   +G++    S ++R  LKR  
Sbjct: 81  TRKLLLHKKQISRLETETKNTGVTIVPLKVYIRDGYAKVLIGLAKGKKSYDKREDLKRKD 140

Query: 151 LKRQIVRTISN 183
           + RQI RT+ N
Sbjct: 141 VDRQIDRTLKN 151

>P10788:RS11_HALMA 30S ribosomal protein S11P - Haloarcula marismortui (Halobacterium|
           marismortui)
          Length = 129

 Score = 30.4 bits (67), Expect = 5.5
 Identities = 26/90 (28%), Positives = 39/90 (43%), Gaps = 3/90 (3%)
 Frame = -2

Query: 423 SGDSVQSENTEEEEPLYMEQSPSYQVRSTKKLIRSEA--RGVRASD-RIRHSAPSRASVV 253
           SG +V  +N +E  P        Y      +++  +A  RGV   D R+R    +  +  
Sbjct: 38  SGGTVVKQNRDEASP--------YAAMQMAEVVAEKALDRGVEGVDVRVRGPGGNLQTSP 89

Query: 252 GAEAGASRRPLIRARAVVPRRHEVADGPHD 163
           G  A A+ R L RA   + R  +V   PHD
Sbjct: 90  GPGAQATIRALARAGLEIGRIEDVTPTPHD 119

>Q485H4:GLND_COLP3 [Protein-PII] uridylyltransferase - Colwellia psychrerythraea|
           (strain 34H / ATCC BAA-681) (Vibrio psychroerythus)
          Length = 878

 Score = 30.4 bits (67), Expect = 5.5
 Identities = 14/46 (30%), Positives = 27/46 (58%)
 Frame = -2

Query: 465 KINITSLSICTIGLSGDSVQSENTEEEEPLYMEQSPSYQVRSTKKL 328
           ++NI S  I T G   D V + +TEE++ L  ++  +  +R T+++
Sbjct: 832 RVNIHSAKITTFGEKADDVFTISTEEDDALTTQEKEALALRLTQEI 877

>Q2FTN5:RL13_METHJ 50S ribosomal protein L13P - Methanospirillum hungatei (strain JF-1|
           / DSM 864)
          Length = 140

 Score = 29.6 bits (65), Expect = 9.4
 Identities = 24/65 (36%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
 Frame = -1

Query: 442 HLYNRTIGGLCTVGEHRG----RRTTIYGTVSQLPSTQY*KANQV*SKRRPCE*SYPTLG 275
           H+  RTI G+      RG    +R  IY  V    S Q  +  +  SK+R    S+ TLG
Sbjct: 71  HILKRTIRGMIPYKRERGIEAMKRIRIYVGVPDELSGQPFETIEDASKKRLGNPSHVTLG 130

Query: 274 AVSSF 260
           AVS+F
Sbjct: 131 AVSTF 135

>Q6AHN3:RECF_LEIXX DNA replication and repair protein recF - Leifsonia xyli subsp.|
           xyli
          Length = 385

 Score = 29.6 bits (65), Expect = 9.4
 Identities = 21/76 (27%), Positives = 32/76 (42%)
 Frame = -2

Query: 420 GDSVQSENTEEEEPLYMEQSPSYQVRSTKKLIRSEARGVRASDRIRHSAPSRASVVGAEA 241
           G + Q +    E   Y+    S++V S + +IR  A       RI+H A      V    
Sbjct: 30  GRNGQGKTNLVESLGYLSALGSHRVSSDQAMIRQGAELAVVRARIQHEARELLVEVQLNR 89

Query: 240 GASRRPLIRARAVVPR 193
           GA+ R  +   A+ PR
Sbjct: 90  GAANRAQVNRAAIKPR 105

>Q91WG2:RABE2_MOUSE Rab GTPase-binding effector protein 2 - Mus musculus (Mouse)|
          Length = 511

 Score = 29.6 bits (65), Expect = 9.4
 Identities = 15/68 (22%), Positives = 34/68 (50%)
 Frame = -2

Query: 519 EENRSTASLQLQVSISHTKINITSLSICTIGLSGDSVQSENTEEEEPLYMEQSPSYQVRS 340
           EE  + ASL+ Q+ +   + ++   S+C++ +  + VQ E  + +    + +  +  +R 
Sbjct: 397 EETAAKASLERQLRVQREETDVLEASLCSLRIETERVQQEQRKAQLTDLLSEQRAKTLRL 456

Query: 339 TKKLIRSE 316
             +L  SE
Sbjct: 457 QAELETSE 464

>Q9H5N1:RABE2_HUMAN Rab GTPase-binding effector protein 2 - Homo sapiens (Human)|
          Length = 569

 Score = 29.6 bits (65), Expect = 9.4
 Identities = 16/68 (23%), Positives = 34/68 (50%)
 Frame = -2

Query: 519 EENRSTASLQLQVSISHTKINITSLSICTIGLSGDSVQSENTEEEEPLYMEQSPSYQVRS 340
           EE  + ASL+ Q+ +   +  +   S+C++    + VQ E ++ + P  + +  +  +R 
Sbjct: 455 EETVARASLEGQLRVQREETEVLEASLCSLRTEMERVQQEQSKAQLPDLLSEQRAKVLRL 514

Query: 339 TKKLIRSE 316
             +L  SE
Sbjct: 515 QAELETSE 522


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 88,797,118
Number of extensions: 1714222
Number of successful extensions: 4868
Number of sequences better than 10.0: 12
Number of HSP's gapped: 4862
Number of HSP's successfully gapped: 12
Length of query: 208
Length of database: 100,686,439
Length adjustment: 108
Effective length of query: 100
Effective length of database: 71,062,579
Effective search space: 7106257900
Effective search space used: 7106257900
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)