ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf29m07 |
|---|---|
| Clone Library Name | barley_pub |
>LOC_Os06g07580:12006.t00641:unspliced-genomic expressed protein| Length = 653 Score = 149 bits (320), Expect = 1e-35 Identities = 62/65 (95%), Positives = 64/65 (98%) Frame = +2 / +1 Query: 101 GKVHGSLARAGKVRGQTPKVAKQDKKKQPRGRAHKRIQYNRRFVTAVVGFGKKRGPNSSE 280 GKVHGSLARAGKVRGQTPKVAKQDKKK+PRGRAHKR+QYNRRFVTAVVGFGKKRGPNSSE Sbjct: 178 GKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSE 357 Query: 281 K*ARR 295 K* RR Sbjct: 358 K*TRR 372 Score = 143 bits (307), Expect(2) = 1e-34 Identities = 59/66 (89%), Positives = 60/66 (90%) Frame = -1 / -1 Query: 297 SRRAYFSEELGPRFLPKPTTAVTKRRLYWILLCARPRGCFFLSCFATLGVCPRTFPARAS 118 +RR YFSEELGPRFLP PTTAVTKRRLY ILL ARPRG FFLSCFATLGV PRTFPARAS Sbjct: 374 ARRVYFSEELGPRFLPNPTTAVTKRRLYCILLWARPRGFFFLSCFATLGVWPRTFPARAS 195 Query: 117 DPCTLP 100 DPCTLP Sbjct: 194 DPCTLP 177 Score = 22.6 bits (43), Expect(2) = 1e-34 Identities = 7/7 (100%), Positives = 7/7 (100%) Frame = -2 / -1 Query: 104 YPCRRRR 84 YPCRRRR Sbjct: 107 YPCRRRR 87
>LOC_Os02g56014:12002.t005526:unspliced-genomic 40S ribosomal protein S30, putative, expressed| Length = 648 Score = 145 bits (312), Expect = 2e-34 Identities = 61/67 (91%), Positives = 64/67 (95%) Frame = +2 / +1 Query: 101 GKVHGSLARAGKVRGQTPKVAKQDKKKQPRGRAHKRIQYNRRFVTAVVGFGKKRGPNSSE 280 GKVHGSLARAGKVRGQTPKVAKQDKKK+PRGRAHKR+QYNRRFVTAVVGFGKKRGPNSSE Sbjct: 199 GKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSE 378 Query: 281 K*ARREI 301 K* R + Sbjct: 379 K*I*RSL 399 Score = 128 bits (274), Expect = 3e-29 Identities = 53/62 (85%), Positives = 54/62 (87%) Frame = -1 / -2 Query: 285 YFSEELGPRFLPKPTTAVTKRRLYWILLCARPRGCFFLSCFATLGVCPRTFPARASDPCT 106 YFSEE GPRFLPKPTTAVTKRRLY I L ARPRG FFLSCFAT GVCP TFPARAS+P T Sbjct: 383 YFSEEFGPRFLPKPTTAVTKRRLYCIRLWARPRGFFFLSCFATFGVCPLTFPARASEP*T 204 Query: 105 LP 100 LP Sbjct: 203 LP 198
>LOC_Os10g30090:12010.t02343:unspliced-genomic high-affinity cationic amino acid transporter 1, putative, expressed| Length = 6588 Score = 29.0 bits (57), Expect(2) = 1.4 Identities = 9/21 (42%), Positives = 15/21 (71%) Frame = +1 / +1 Query: 343 CWKRRYLRSYSIVKVCIFCLA 405 C K++ +R VK+CI+C+A Sbjct: 6466 CIKKKEIR*LQYVKICIYCIA 6528 Score = 25.8 bits (50), Expect(2) = 1.4 Identities = 8/21 (38%), Positives = 16/21 (76%) Frame = +2 / +1 Query: 125 RAGKVRGQTPKVAKQDKKKQP 187 RAGK++ + +V + ++KK+P Sbjct: 3946 RAGKIKSEGDRVQEGERKKKP 4008
>LOC_Os03g20680:12003.t01824:unspliced-genomic embryonic protein DC-8, putative, expressed| Length = 1411 Score = 25.4 bits (49), Expect(2) = 3.5 Identities = 8/18 (44%), Positives = 11/18 (61%) Frame = -1 / -2 Query: 150 VCPRTFPARASDPCTLPM 97 + P TFP+ S PC P+ Sbjct: 987 IAPVTFPSAPSRPCPCPL 934 Score = 23.5 bits (45), Expect(2) = 3.5 Identities = 7/12 (58%), Positives = 9/12 (75%) Frame = -2 / -2 Query: 110 APYPCRRRRWGC 75 +P+PCRRR C Sbjct: 819 SPWPCRRRSGWC 784
>LOC_Os06g35700:12006.t03267:unspliced-genomic reticuline oxidase precursor, putative, expressed| Length = 1973 Score = 31.3 bits (62), Expect = 4.7 Identities = 13/37 (35%), Positives = 20/37 (54%) Frame = -1 / -3 Query: 252 PKPTTAVTKRRLYWILLCARPRGCFFLSCFATLGVCP 142 P P A ++ +YW+L PR ++ ATL +CP Sbjct: 1365 PPPPPAALQKFMYWML*STPPRCGNGVAASATLPICP 1255
>LOC_Os04g16150:12004.t01375:unspliced-genomic retrotransposon protein, putative, unclassified| Length = 5303 Score = 31.3 bits (62), Expect = 4.7 Identities = 11/15 (73%), Positives = 11/15 (73%) Frame = -1 / +3 Query: 204 LCARPRGCFFLSCFA 160 LC RP GC F SCFA Sbjct: 90 LCTRPGGCQFRSCFA 134
>LOC_Os05g35620:12005.t03155:unspliced-genomic hypothetical protein| Length = 411 Score = 31.3 bits (62), Expect = 4.7 Identities = 11/19 (57%), Positives = 12/19 (63%) Frame = -2 / +1 Query: 128 HGPAIRAPYPCRRRRWGCG 72 HGP P P RR+RWG G Sbjct: 181 HGPPASPPPPSRRQRWGEG 237
>LOC_Os04g33720:12004.t03048:unspliced-genomic beta-fructofuranosidase, insoluble isoenzyme 3 precursor, putative,| expressed Length = 2927 Score = 31.3 bits (62), Expect = 4.7 Identities = 10/15 (66%), Positives = 10/15 (66%) Frame = +3 / -2 Query: 102 VRCTDRWPVPGRCAG 146 VRC RWP P RC G Sbjct: 1321 VRCRTRWPSPRRCGG 1277
>LOC_Os04g02120:12004.t00109:unspliced-genomic expressed protein| Length = 1509 Score = 31.3 bits (62), Expect = 4.7 Identities = 10/16 (62%), Positives = 12/16 (75%) Frame = -2 / +3 Query: 122 PAIRAPYPCRRRRWGC 75 PA++ P RRRRWGC Sbjct: 927 PAVKFPVITRRRRWGC 974
>LOC_Os03g52794:12003.t04602:unspliced-genomic phosphatidylinositol 3- and 4-kinase family protein, expressed| Length = 18038 Score = 31.3 bits (62), Expect = 4.7 Identities = 13/43 (30%), Positives = 23/43 (53%) Frame = +2 / -2 Query: 125 RAGKVRGQTPKVAKQDKKKQPRGRAHKRIQYNRRFVTAVVGFG 253 RAG + G+T + + +++ +G + F+ AVVGFG Sbjct: 4327 RAGILGGETAEAEAEAGRRREKGGTKPEVPRRESFLHAVVGFG 4199
>LOC_Os03g16860:12003.t01467:unspliced-genomic heat shock cognate 70 kDa protein 2, putative, expressed| Length = 2917 Score = 31.3 bits (62), Expect = 4.7 Identities = 15/55 (27%), Positives = 25/55 (45%) Frame = +2 / +3 Query: 101 GKVHGSLARAGKVRGQTPKVAKQDKKKQPRGRAHKRIQYNRRFVTAVVGFGKKRG 265 G HG L + RG+ P + ++ +PR RA +R+ A G ++ G Sbjct: 1698 GAQHGPLPQVHGARGEVPPRRQDGQEHRPRRRARRRLHPYPPRAAAAPGLLQREG 1862
>LOC_Os02g04540:12002.t00353:unspliced-genomic vegetative cell wall protein gp1 precursor, putative, expressed| Length = 2382 Score = 31.3 bits (62), Expect = 4.7 Identities = 15/35 (42%), Positives = 19/35 (54%) Frame = +2 / +1 Query: 122 ARAGKVRGQTPKVAKQDKKKQPRGRAHKRIQYNRR 226 ARA + RG P V +QD R RAH+R + R Sbjct: 745 ARAQQPRGMHPAVHRQDGGHAQRDRAHRRRAHRLR 849
>LOC_Os06g10450:12006.t00923:unspliced-genomic expressed protein| Length = 2048 Score = 30.9 bits (61), Expect = 6.5 Identities = 11/15 (73%), Positives = 11/15 (73%) Frame = -2 / -3 Query: 128 HGPAIRAPYPCRRRR 84 HG A R P PCRRRR Sbjct: 246 HGAAARPPTPCRRRR 202
>LOC_Os03g39720:12003.t03408:unspliced-genomic hypothetical protein| Length = 1292 Score = 30.9 bits (61), Expect = 6.5 Identities = 11/15 (73%), Positives = 11/15 (73%) Frame = -2 / -1 Query: 128 HGPAIRAPYPCRRRR 84 HG A R P PCRRRR Sbjct: 263 HGAAARPPTPCRRRR 219
>LOC_Os01g36970:12001.t03246:unspliced-genomic expressed protein| Length = 3245 Score = 30.9 bits (61), Expect = 6.5 Identities = 13/34 (38%), Positives = 19/34 (55%) Frame = +2 / +1 Query: 101 GKVHGSLARAGKVRGQTPKVAKQDKKKQPRGRAH 202 G+VHG RA R + A ++ ++PRG AH Sbjct: 2704 GEVHGRGGRAAAGRAEGAGGADREDHRRPRGHAH 2805
>LOC_Os08g42700:12008.t03999:unspliced-genomic resistance protein, putative, expressed| Length = 7984 Score = 30.4 bits (60), Expect = 8.9 Identities = 12/33 (36%), Positives = 17/33 (51%) Frame = -1 / +3 Query: 189 RGCFFLSCFATLGVCPRTFPARASDPCTLPMST 91 + C L+C L + P+T RA D C+ ST Sbjct: 2865 QSCHLLNCRCNLNLFPKTLSERAEDKCSHIHST 2963
>LOC_Os07g11460:12007.t01020:unspliced-genomic retrotransposon protein, putative, unclassified| Length = 2836 Score = 30.4 bits (60), Expect = 8.9 Identities = 14/30 (46%), Positives = 19/30 (63%) Frame = +1 / -2 Query: 298 NKKGSSPALVSSLV*CWKRRYLRSYSIVKV 387 N+ SS AL S+L+ W+R YLR +V V Sbjct: 2355 NRCDSSAALASALLAFWRRDYLRLSKVVVV 2266
>LOC_Os07g07910:12007.t00670:unspliced-genomic potassium channel AKT1, putative, expressed| Length = 5436 Score = 30.4 bits (60), Expect = 8.9 Identities = 12/23 (52%), Positives = 12/23 (52%) Frame = -1 / +1 Query: 159 TLGVCPRTFPARASDPCTLPMST 91 T G CP PA A CT P ST Sbjct: 4348 TAGTCPARAPATAPPRCTAPSST 4416
>LOC_Os04g35460:12004.t03216:unspliced-genomic retrotransposon protein, putative, unclassified| Length = 2143 Score = 30.4 bits (60), Expect = 8.9 Identities = 16/53 (30%), Positives = 26/53 (49%) Frame = -1 / -3 Query: 348 PTSNERGNQRRGRAFFISRRAYFSEELGPRFLPKPTTAVTKRRLYWILLCARP 190 P+S R R R ++ +GP FLP+P +++++ L LL RP Sbjct: 1193 PSSRVRTRLSRARPRALTAPGRRVPPVGPVFLPQPASSLSRANLAPFLLQIRP 1035
>LOC_Os02g49570:12002.t04541:unspliced-genomic protease 4, putative, expressed| Length = 9006 Score = 30.4 bits (60), Expect = 8.9 Identities = 11/26 (42%), Positives = 15/26 (57%) Frame = -1 / -3 Query: 258 FLPKPTTAVTKRRLYWILLCARPRGC 181 F+P PT + + L +LC R RGC Sbjct: 3484 FVPSPTLFFSAKELISCVLCGRGRGC 3407
>LOC_Os11g08140:12011.t00705:unspliced-genomic conserved hypothetical protein| Length = 1240 Score = 30.4 bits (60), Expect = 8.9 Identities = 14/39 (35%), Positives = 20/39 (51%) Frame = +2 / -3 Query: 221 RRFVTAVVGFGKKRGPNSSEK*ARREIKKALPLRWFPLS 337 +RF+ GFG K GP S + ++ + P R PLS Sbjct: 878 KRFLKVTFGFGPKAGPKPSLSLSLGPVRPSPPSRRSPLS 762
>LOC_Os10g38890:12010.t03128:unspliced-genomic expressed protein| Length = 3757 Score = 30.4 bits (60), Expect = 8.9 Identities = 15/38 (39%), Positives = 19/38 (50%) Frame = +2 / -1 Query: 134 KVRGQTPKVAKQDKKKQPRGRAHKRIQYNRRFVTAVVG 247 K R P + QD+K+QP G AH Q +R V G Sbjct: 217 KPR*GRPPMLLQDRKRQP*GHAHSGGQRQQRTAATVPG 104 Database: tigr.seq.out Posted date: Jul 20, 2007 8:58 AM Number of letters in database: 166,841,660 Number of sequences in database: 56,278 Lambda K H 0.318 0.134 0.401 Matrix: BLOSUM62 Number of Sequences: 56278 Number of Hits to DB: 126,126,492 Number of extensions: 1569261 Number of successful extensions: 9298 Number of sequences better than 10.0: 22 Length of query: 166 Length of database: 55,613,886 Length adjustment: 48 Effective length of query: 118 Effective length of database: 52,912,542 Effective search space: 6243679956 Effective search space used: 6243679956 Neighboring words threshold: 13 Window for multiple hits: 40 X1: 16 ( 7.3 bits)
