No.
Definition
Score (bits)
E Value
1 gb|AY104638.1| Zea mays PCO065152 mRNA sequence
371
6e-99
2 dbj|AK101373.1| Oryza sativa (japonica cultivar-group) cDNA clon...
349
2e-92
3 ref|NM_001062731.1| Oryza sativa (japonica cultivar-group) Os05g...
341
5e-90
4 dbj|AK060408.1| Oryza sativa (japonica cultivar-group) cDNA clon...
333
1e-87
5 gb|AY107650.1| Zea mays PCO102139 mRNA sequence
210
1e-50
6 gb|BT018208.1| Zea mays clone EL01N0560C12.c mRNA sequence
202
3e-48
7 gb|AC104713.3| Oryza sativa (japonica cultivar-group) chromosome...
172
3e-39
8 gb|AC098833.2| Oryza sativa (japonica cultivar-group) chromosome...
172
3e-39
9 dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D...
172
3e-39
10 ref|NM_111562.3| Arabidopsis thaliana unknown protein (AT3G06820...
88
1e-13
11 gb|AY093768.1| Arabidopsis thaliana At1g80210/F18B13_28 mRNA, co...
88
1e-13
12 emb|BX813754.1|CNS0AEJ5 Arabidopsis thaliana Full-length cDNA Co...
88
1e-13
13 emb|BX823110.1|CNS0A7SR Arabidopsis thaliana Full-length cDNA Co...
88
1e-13
14 emb|BX822877.1|CNS0A4Y1 Arabidopsis thaliana Full-length cDNA Co...
88
1e-13
15 gb|BT002265.1| Arabidopsis thaliana At1g80210/F18B13_28 mRNA, co...
88
1e-13
16 emb|BX823717.1|CNS0A7QO Arabidopsis thaliana Full-length cDNA Co...
82
8e-12
17 gb|AY149940.1| Arabidopsis thaliana At3g06820/F3E22_4 mRNA, comp...
80
3e-11
18 gb|AY075635.1| Arabidopsis thaliana AT3g06820/F3E22_4 mRNA, comp...
80
3e-11
19 emb|BX815759.1|CNS0AEG9 Arabidopsis thaliana Full-length cDNA Co...
80
3e-11
20 ref|NM_106670.1| Arabidopsis thaliana unknown protein (AT1G80210...
74
2e-09
21 gb|BT012872.1| Lycopersicon esculentum clone 113971R, mRNA sequence
74
2e-09
22 gb|AC023912.5|ATAC023912 Arabidopsis thaliana chromosome III BAC...
60
3e-05
23 gb|BC082208.1| Xenopus laevis MGC99130 protein, mRNA (cDNA clone...
54
0.002
24 gb|AC009322.1|AC009322 Arabidopsis thaliana chromosome I BAC F18...
54
0.002
25 emb|BX816871.1|CNS0AEGQ Arabidopsis thaliana Full-length cDNA Co...
48
0.11
26 ref|XM_967407.1| PREDICTED: Tribolium castaneum similar to C6.1A...
46
0.43
27 gb|AC160559.5| Mus musculus BAC clone RP24-404N24 from chromosom...
46
0.43
28 dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
46
0.43
29 gb|AC168058.4| Mus musculus BAC clone RP24-134D11 from chromosom...
46
0.43
30 gb|AC127233.2| Mus musculus BAC clone RP24-559K11 from chromosom...
44
1.7
31 gb|AC153149.4| Mus musculus BAC clone RP23-176O2 from chromosome...
44
1.7
32 emb|AL353688.7| Human DNA sequence from clone RP11-275O3 on chro...
44
1.7
33 ref|XM_001007999.1| Tetrahymena thermophila SB210 Leucine Rich R...
42
6.7
34 gb|CP000316.1| Polaromonas sp. JS666, complete genome
42
6.7
35 gb|AC151783.1| Ornithorhynchus anatinus chromosome UNK clone OAB...
42
6.7
36 gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome
42
6.7
37 gb|AC120541.8| Mus musculus, clone RP23-286L18, complete sequence
42
6.7
38 emb|AL096771.11|HSJ238D15 Human DNA sequence from clone RP1-238D...
42
6.7
39 gb|AE016820.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10...
42
6.7
40 emb|AL939119.1|SCO939119 Streptomyces coelicolor A3(2) complete ...
42
6.7
41 dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ...
42
6.7
42 dbj|BA000007.2| Escherichia coli O157:H7 str. Sakai DNA, complet...
42
6.7
43 gb|AC006030.2| Homo sapiens BAC clone RP11-1P9 from 2, complete ...
42
6.7
44 gb|AF263912.1|AF263912 Streptomyces noursei ATCC 11455 nystatin ...
42
6.7
45 ref|NM_211733.1| Eremothecium gossypii AGR006Wp (AGR006W), mRNA
42
6.7
46 gb|AY864674.1| Escherichia coli strain 9717 putative type III se...
42
6.7
47 gb|AY864672.1| Escherichia coli strain 36-5 putative type III se...
42
6.7
48 gb|AE005174.2| Escherichia coli O157:H7 EDL933, complete genome
42
6.7
49 emb|AL929150.12| Zebrafish DNA sequence from clone CH211-196H16 ...
42
6.7
>dbj|AK101373.1 | Oryza sativa (japonica cultivar-group) cDNA clone:J033035N15, full
insert sequence
Length = 1783
Score = 349 bits (176), Expect = 2e-92
Identities = 353/412 (85%)
Strand = Plus / Plus
Query: 847 ctgttgatcaagatggttcagatctgtccccaagcatacaggaggctttgcaccgctcaa 906
||||||||| ||||| |||||| || |||||||||| |||||||| |||||| | ||||
Sbjct: 822 ctgttgatctagatgaatcagatatgaccccaagcatccaggaggcgttgcacaggtcaa 881
Query: 907 ctatggacataagtggtgcagagtatagaaggaaggaggtgccacttaaagtattcccta 966
|||||||| ||||||||||| ||| ||| ||||||||||||||| | ||||| || |
Sbjct: 882 acatggacattagtggtgcagaatatgtaagaaaggaggtgccactttatgtatttccga 941
Query: 967 caaggcatctgctaaagctggacactacgttgagttcttactgtggcatgcaacatgtcc 1026
| ||||||||||||||||||||||| || || | ||||||||||| ||||||||||||
Sbjct: 942 ccaggcatctgctaaagctggacaccacattaacttcttactgtgatatgcaacatgtcg 1001
Query: 1027 tttttaaagaggaacaatcagcatataaccaagccatgcttcagaacatttgtgatggga 1086
|||| |||||||| ||||||||||||| |||||||||| ||| || ||| |||||||||
Sbjct: 1002 ttttcgaagaggaaaaatcagcatataatcaagccatgcatcaaaatattcgtgatggga 1061
Query: 1087 agatgcacccacttacatctatgcaccatacctccacatacaatgcttctctatgcaaac 1146
|||| ||||||||||||||||| |||||| | || |||||||| | ||||| ||||||
Sbjct: 1062 agatccacccacttacatctattcaccatgcatctacatacaactcatctctctgcaaat 1121
Query: 1147 tgatggaatactgcttgagccctgctataggtgtgcttcaggaccgtgtgaaagaaaatg 1206
| ||||||||||| ||||||||||||||| ||| |||||||| ||| |||| |||||||
Sbjct: 1122 taatggaatactgtttgagccctgctataactgtacttcaggatcgtctgaaggaaaatg 1181
Query: 1207 aacttcggttggctatgctattggaggaggctaaacaactggaggccgagaa 1258
|||||||||| |||||||| ||||||||||||||||||| ||||| |||||
Sbjct: 1182 aacttcggttatctatgctaatggaggaggctaaacaacttgaggcagagaa 1233
Score = 240 bits (121), Expect = 1e-59
Identities = 193/217 (88%)
Strand = Plus / Plus
Query: 123 agatgtcgctgacggaggtcaggctcggcgaggaggtgtggctcacatgcctctcccacg 182
||||||||||||||||||||||| |||| ||||||||||||||||| |||||||||||||
Sbjct: 102 agatgtcgctgacggaggtcaggatcggggaggaggtgtggctcacctgcctctcccacg 161
Query: 183 ccctcaccaccgagaccgaggaggtcatgggcctcctcctcggcgacgtcgagtcctcca 242
|||||||||||||||| ||||||||||||||||||||| |||||||| || || || |
Sbjct: 162 ccctcaccaccgagacggaggaggtcatgggcctcctcttcggcgacatcaagcattcga 221
Query: 243 gcaggggcggctccaccgcggtgatatggggcgcgttgccgcagatgaggtgcgagcgga 302
|||||||||| || || |||||||||| |||| |||||||||||||||||||||||
Sbjct: 222 gcaggggcggggtgactgctctgatatggggggcgtcgccgcagatgaggtgcgagcgga 281
Query: 303 agaaggaccgcgtcgaggtcaaccccgcgctgctcgc 339
|||||||| | || ||||||||||||| |||||||||
Sbjct: 282 agaaggacagggtggaggtcaaccccgagctgctcgc 318
Score = 188 bits (95), Expect = 5e-44
Identities = 165/187 (88%), Gaps = 1/187 (0%)
Strand = Plus / Plus
Query: 393 gggtgatcggctggtaccactcgcacccgcatatcactgtcctgccttcccatgtagatg 452
||||||| || |||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct: 372 gggtgattggatggtaccactcgcacccgcatatcaccgttctgccttcccatgtagatg 431
Query: 453 tgcgaacccaggctatgttttcagttgctagatccaggttttgttggattgatattttcc 512
| || |||||||| |||||| |||||| | || ||||||||||| || ||||||| ||
Sbjct: 432 ttcggacccaggcaatgttt-cagttgatggagccaggttttgtgggtctgatattctct 490
Query: 513 tgttttagtgaagatgctcaaaaggttgggaaaatccaagtgattgccttccagtctctt 572
|||||||| |||||||||||||||||||| ||||||||||||||||| || ||||| |||
Sbjct: 491 tgttttagcgaagatgctcaaaaggttggaaaaatccaagtgattgcttttcagtcactt 550
Query: 573 gatggaa 579
| |||||
Sbjct: 551 ggtggaa 557
Score = 60.0 bits (30), Expect = 3e-05
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 619 atccagtcattgaccttgaatcatcttggagttc 652
||||||||||| ||||||||||||||||||||||
Sbjct: 585 atccagtcattaaccttgaatcatcttggagttc 618
Score = 50.1 bits (25), Expect = 0.027
Identities = 43/49 (87%)
Strand = Plus / Plus
Query: 669 gcattaattgagggcattgaacatgacactggggattctagagcttcaa 717
||||| ||||| ||||||||||| ||||| |||||||||| | ||||||
Sbjct: 641 gcattgattgaaggcattgaacaagacacgggggattctaaatcttcaa 689
>ref|NM_001062731.1 | Oryza sativa (japonica cultivar-group) Os05g0542600 (Os05g0542600)
mRNA, complete cds
Length = 1781
Score = 341 bits (172), Expect = 5e-90
Identities = 352/412 (85%)
Strand = Plus / Plus
Query: 847 ctgttgatcaagatggttcagatctgtccccaagcatacaggaggctttgcaccgctcaa 906
||||||||| ||||| |||||| || |||||||||| |||||||| |||||| | ||||
Sbjct: 821 ctgttgatctagatgaatcagatatgaccccaagcatccaggaggcgttgcacaggtcaa 880
Query: 907 ctatggacataagtggtgcagagtatagaaggaaggaggtgccacttaaagtattcccta 966
|||||||| ||||||||||| ||| ||| ||||||||||||||| | ||||| || |
Sbjct: 881 acatggacattagtggtgcagaatatgtaagaaaggaggtgccactttatgtatttccga 940
Query: 967 caaggcatctgctaaagctggacactacgttgagttcttactgtggcatgcaacatgtcc 1026
| ||||||||||||||||||||||| || || | ||||||||||| ||||||||||||
Sbjct: 941 ccaggcatctgctaaagctggacaccacattaacttcttactgtgatatgcaacatgtcg 1000
Query: 1027 tttttaaagaggaacaatcagcatataaccaagccatgcttcagaacatttgtgatggga 1086
|||| |||||||| ||||||||||||| |||||||||| ||| || ||| |||||||||
Sbjct: 1001 ttttcgaagaggaaaaatcagcatataatcaagccatgcatcaaaatattcgtgatggga 1060
Query: 1087 agatgcacccacttacatctatgcaccatacctccacatacaatgcttctctatgcaaac 1146
|||| ||||||||||||||||| |||||| | || |||||||| | ||||| ||||||
Sbjct: 1061 agatccacccacttacatctattcaccatgcatctacatacaactcatctctctgcaaat 1120
Query: 1147 tgatggaatactgcttgagccctgctataggtgtgcttcaggaccgtgtgaaagaaaatg 1206
| |||||||| || ||||||||||||||| ||| |||||||| ||| |||| |||||||
Sbjct: 1121 taatggaatattgtttgagccctgctataactgtacttcaggatcgtctgaaggaaaatg 1180
Query: 1207 aacttcggttggctatgctattggaggaggctaaacaactggaggccgagaa 1258
|||||||||| |||||||| ||||||||||||||||||| ||||| |||||
Sbjct: 1181 aacttcggttatctatgctaatggaggaggctaaacaacttgaggcagagaa 1232
Score = 240 bits (121), Expect = 1e-59
Identities = 193/217 (88%)
Strand = Plus / Plus
Query: 123 agatgtcgctgacggaggtcaggctcggcgaggaggtgtggctcacatgcctctcccacg 182
||||||||||||||||||||||| |||| ||||||||||||||||| |||||||||||||
Sbjct: 101 agatgtcgctgacggaggtcaggatcggggaggaggtgtggctcacctgcctctcccacg 160
Query: 183 ccctcaccaccgagaccgaggaggtcatgggcctcctcctcggcgacgtcgagtcctcca 242
|||||||||||||||| ||||||||||||||||||||| |||||||| || || || |
Sbjct: 161 ccctcaccaccgagacggaggaggtcatgggcctcctcttcggcgacatcaagcattcga 220
Query: 243 gcaggggcggctccaccgcggtgatatggggcgcgttgccgcagatgaggtgcgagcgga 302
|||||||||| || || |||||||||| |||| |||||||||||||||||||||||
Sbjct: 221 gcaggggcggggtgactgctctgatatggggggcgtcgccgcagatgaggtgcgagcgga 280
Query: 303 agaaggaccgcgtcgaggtcaaccccgcgctgctcgc 339
|||||||| | || ||||||||||||| |||||||||
Sbjct: 281 agaaggacagggtggaggtcaaccccgagctgctcgc 317
Score = 188 bits (95), Expect = 5e-44
Identities = 165/187 (88%), Gaps = 1/187 (0%)
Strand = Plus / Plus
Query: 393 gggtgatcggctggtaccactcgcacccgcatatcactgtcctgccttcccatgtagatg 452
||||||| || |||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct: 371 gggtgattggatggtaccactcgcacccgcatatcaccgttctgccttcccatgtagatg 430
Query: 453 tgcgaacccaggctatgttttcagttgctagatccaggttttgttggattgatattttcc 512
| || |||||||| |||||| |||||| | || ||||||||||| || ||||||| ||
Sbjct: 431 ttcggacccaggcaatgttt-cagttgatggagccaggttttgtgggtctgatattctct 489
Query: 513 tgttttagtgaagatgctcaaaaggttgggaaaatccaagtgattgccttccagtctctt 572
|||||||| |||||||||||||||||||| ||||||||||||||||| || ||||| |||
Sbjct: 490 tgttttagcgaagatgctcaaaaggttggaaaaatccaagtgattgcttttcagtcactt 549
Query: 573 gatggaa 579
| |||||
Sbjct: 550 ggtggaa 556
Score = 60.0 bits (30), Expect = 3e-05
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 619 atccagtcattgaccttgaatcatcttggagttc 652
||||||||||| ||||||||||||||||||||||
Sbjct: 584 atccagtcattaaccttgaatcatcttggagttc 617
Score = 50.1 bits (25), Expect = 0.027
Identities = 43/49 (87%)
Strand = Plus / Plus
Query: 669 gcattaattgagggcattgaacatgacactggggattctagagcttcaa 717
||||| ||||| ||||||||||| ||||| |||||||||| | ||||||
Sbjct: 640 gcattgattgaaggcattgaacaagacacgggggattctaaatcttcaa 688
>dbj|AK060408.1 | Oryza sativa (japonica cultivar-group) cDNA clone:001-010-D07, full
insert sequence
Length = 1778
Score = 333 bits (168), Expect = 1e-87
Identities = 351/412 (85%)
Strand = Plus / Plus
Query: 847 ctgttgatcaagatggttcagatctgtccccaagcatacaggaggctttgcaccgctcaa 906
||||||||| ||||| |||||| || |||||||||| |||||||| |||||| | ||||
Sbjct: 818 ctgttgatctagatgaatcagatatgaccccaagcatccaggaggcgttgcacaggtcaa 877
Query: 907 ctatggacataagtggtgcagagtatagaaggaaggaggtgccacttaaagtattcccta 966
|||||||| ||||||||||| ||| ||| ||||||||||||||| | ||||| || |
Sbjct: 878 acatggacattagtggtgcagaatatgtaagaaaggaggtgccactttatgtatttccga 937
Query: 967 caaggcatctgctaaagctggacactacgttgagttcttactgtggcatgcaacatgtcc 1026
| ||||||||||||||||||||||| || || | ||||||||||| ||||||||||||
Sbjct: 938 ccaggcatctgctaaagctggacaccacattaacttcttactgtgatatgcaacatgtcg 997
Query: 1027 tttttaaagaggaacaatcagcatataaccaagccatgcttcagaacatttgtgatggga 1086
||| |||||||| ||||||||||||| |||||||||| ||| || ||| |||||||||
Sbjct: 998 tttccgaagaggaaaaatcagcatataatcaagccatgcatcaaaatattcgtgatggga 1057
Query: 1087 agatgcacccacttacatctatgcaccatacctccacatacaatgcttctctatgcaaac 1146
|||| ||||||||||||||||| |||||| | || |||||||| | ||||| ||||||
Sbjct: 1058 agatccacccacttacatctattcaccatgcatctacatacaactcatctctctgcaaat 1117
Query: 1147 tgatggaatactgcttgagccctgctataggtgtgcttcaggaccgtgtgaaagaaaatg 1206
| |||||||| || ||||||||||||||| ||| |||||||| ||| |||| |||||||
Sbjct: 1118 taatggaatattgtttgagccctgctataactgtacttcaggatcgtctgaaggaaaatg 1177
Query: 1207 aacttcggttggctatgctattggaggaggctaaacaactggaggccgagaa 1258
|||||||||| |||||||| ||||||||||||||||||| ||||| |||||
Sbjct: 1178 aacttcggttatctatgctaatggaggaggctaaacaacttgaggcagagaa 1229
Score = 240 bits (121), Expect = 1e-59
Identities = 193/217 (88%)
Strand = Plus / Plus
Query: 123 agatgtcgctgacggaggtcaggctcggcgaggaggtgtggctcacatgcctctcccacg 182
||||||||||||||||||||||| |||| ||||||||||||||||| |||||||||||||
Sbjct: 98 agatgtcgctgacggaggtcaggatcggggaggaggtgtggctcacctgcctctcccacg 157
Query: 183 ccctcaccaccgagaccgaggaggtcatgggcctcctcctcggcgacgtcgagtcctcca 242
|||||||||||||||| ||||||||||||||||||||| |||||||| || || || |
Sbjct: 158 ccctcaccaccgagacggaggaggtcatgggcctcctcttcggcgacatcaagcattcga 217
Query: 243 gcaggggcggctccaccgcggtgatatggggcgcgttgccgcagatgaggtgcgagcgga 302
|||||||||| || || |||||||||| |||| |||||||||||||||||||||||
Sbjct: 218 gcaggggcggggtgactgctctgatatggggggcgtcgccgcagatgaggtgcgagcgga 277
Query: 303 agaaggaccgcgtcgaggtcaaccccgcgctgctcgc 339
|||||||| | || ||||||||||||| |||||||||
Sbjct: 278 agaaggacagggtggaggtcaaccccgagctgctcgc 314
Score = 180 bits (91), Expect = 1e-41
Identities = 164/187 (87%), Gaps = 1/187 (0%)
Strand = Plus / Plus
Query: 393 gggtgatcggctggtaccactcgcacccgcatatcactgtcctgccttcccatgtagatg 452
||||||| || |||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct: 368 gggtgattggatggtaccactcgcacccgcatatcaccgttctgccttcccatgtagatg 427
Query: 453 tgcgaacccaggctatgttttcagttgctagatccaggttttgttggattgatattttcc 512
| || |||||||| ||| ||||||||| | || ||||||||||| || ||||||| ||
Sbjct: 428 ttcggacccaggcaatg-tttcagttgatggagccaggttttgtgggtctgatattctct 486
Query: 513 tgttttagtgaagatgctcaaaaggttgggaaaatccaagtgattgccttccagtctctt 572
|||||||| ||||||||||| |||||||| ||||||||||||||||| || ||||| |||
Sbjct: 487 tgttttagcgaagatgctcagaaggttggaaaaatccaagtgattgcttttcagtcactt 546
Query: 573 gatggaa 579
| |||||
Sbjct: 547 ggtggaa 553
Score = 60.0 bits (30), Expect = 3e-05
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 619 atccagtcattgaccttgaatcatcttggagttc 652
||||||||||| ||||||||||||||||||||||
Sbjct: 581 atccagtcattaaccttgaatcatcttggagttc 614
Score = 50.1 bits (25), Expect = 0.027
Identities = 43/49 (87%)
Strand = Plus / Plus
Query: 669 gcattaattgagggcattgaacatgacactggggattctagagcttcaa 717
||||| ||||| ||||||||||| ||||| |||||||||| | ||||||
Sbjct: 637 gcattgattgaaggcattgaacaagacacgggggattctaaatcttcaa 685
>gb|AC104713.3 | Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1362_G11,
complete sequence
Length = 115808
Score = 172 bits (87), Expect = 3e-39
Identities = 102/107 (95%)
Strand = Plus / Plus
Query: 123 agatgtcgctgacggaggtcaggctcggcgaggaggtgtggctcacatgcctctcccacg 182
||||||||||||||||||||||| |||| ||||||||||||||||| |||||||||||||
Sbjct: 104853 agatgtcgctgacggaggtcaggatcggggaggaggtgtggctcacctgcctctcccacg 104912
Query: 183 ccctcaccaccgagaccgaggaggtcatgggcctcctcctcggcgac 229
|||||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct: 104913 ccctcaccaccgagacggaggaggtcatgggcctcctcttcggcgac 104959
Score = 135 bits (68), Expect = 6e-28
Identities = 128/148 (86%)
Strand = Plus / Plus
Query: 918 agtggtgcagagtatagaaggaaggaggtgccacttaaagtattccctacaaggcatctg 977
||||||||||| ||| ||| ||||||||||||||| | ||||| || || |||||||||
Sbjct: 108864 agtggtgcagaatatgtaagaaaggaggtgccactttatgtatttccgaccaggcatctg 108923
Query: 978 ctaaagctggacactacgttgagttcttactgtggcatgcaacatgtcctttttaaagag 1037
|||||||||||||| || || | ||||||||||| |||||||||||| |||| |||||
Sbjct: 108924 ctaaagctggacaccacattaacttcttactgtgatatgcaacatgtcgttttcgaagag 108983
Query: 1038 gaacaatcagcatataaccaagccatgc 1065
||| ||||||||||||| ||||||||||
Sbjct: 108984 gaaaaatcagcatataatcaagccatgc 109011
Score = 103 bits (52), Expect = 2e-18
Identities = 70/76 (92%)
Strand = Plus / Plus
Query: 264 tgatatggggcgcgttgccgcagatgaggtgcgagcggaagaaggaccgcgtcgaggtca 323
|||||||||| |||| ||||||||||||||||||||||||||||||| | || |||||||
Sbjct: 105098 tgatatggggggcgtcgccgcagatgaggtgcgagcggaagaaggacagggtggaggtca 105157
Query: 324 accccgcgctgctcgc 339
|||||| |||||||||
Sbjct: 105158 accccgagctgctcgc 105173
Score = 81.8 bits (41), Expect = 8e-12
Identities = 53/57 (92%)
Strand = Plus / Plus
Query: 393 gggtgatcggctggtaccactcgcacccgcatatcactgtcctgccttcccatgtag 449
||||||| || |||||||||||||||||||||||||| || ||||||||||||||||
Sbjct: 105334 gggtgattggatggtaccactcgcacccgcatatcaccgttctgccttcccatgtag 105390
Score = 69.9 bits (35), Expect = 3e-08
Identities = 78/91 (85%), Gaps = 1/91 (1%)
Strand = Plus / Plus
Query: 448 agatgtgcgaacccaggctatgttttcagttgctagatccaggttttgttggattgatat 507
|||||| || |||||||| |||||| |||||| | || ||||||||||| || ||||||
Sbjct: 105934 agatgttcggacccaggcaatgttt-cagttgatggagccaggttttgtgggtctgatat 105992
Query: 508 tttcctgttttagtgaagatgctcaaaaggt 538
| || |||||||| |||||||||||||||||
Sbjct: 105993 tctcttgttttagcgaagatgctcaaaaggt 106023
Score = 69.9 bits (35), Expect = 3e-08
Identities = 68/79 (86%)
Strand = Plus / Plus
Query: 1078 gtgatgggaagatgcacccacttacatctatgcaccatacctccacatacaatgcttctc 1137
||||||||||||| ||||||||||||||||| |||||| | || |||||||| | ||||
Sbjct: 109109 gtgatgggaagatccacccacttacatctattcaccatgcatctacatacaactcatctc 109168
Query: 1138 tatgcaaactgatggaata 1156
| |||||| | ||||||||
Sbjct: 109169 tctgcaaattaatggaata 109187
Score = 60.0 bits (30), Expect = 3e-05
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 619 atccagtcattgaccttgaatcatcttggagttc 652
||||||||||| ||||||||||||||||||||||
Sbjct: 106197 atccagtcattaaccttgaatcatcttggagttc 106230
Score = 60.0 bits (30), Expect = 3e-05
Identities = 48/54 (88%)
Strand = Plus / Plus
Query: 1161 ttgagccctgctataggtgtgcttcaggaccgtgtgaaagaaaatgaacttcgg 1214
||||||||||||||| ||| |||||||| ||| |||| |||||||||||||||
Sbjct: 109282 ttgagccctgctataactgtacttcaggatcgtctgaaggaaaatgaacttcgg 109335
Score = 56.0 bits (28), Expect = 4e-04
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 1219 ctatgctattggaggaggctaaacaactggaggccgagaa 1258
|||||||| ||||||||||||||||||| ||||| |||||
Sbjct: 109415 ctatgctaatggaggaggctaaacaacttgaggcagagaa 109454
Score = 50.1 bits (25), Expect = 0.027
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 535 aggttgggaaaatccaagtgattgccttccagtctcttgatggaa 579
||||||| ||||||||||||||||| || ||||| |||| |||||
Sbjct: 106125 aggttggaaaaatccaagtgattgcttttcagtcacttggtggaa 106169
Score = 50.1 bits (25), Expect = 0.027
Identities = 43/49 (87%)
Strand = Plus / Plus
Query: 669 gcattaattgagggcattgaacatgacactggggattctagagcttcaa 717
||||| ||||| ||||||||||| ||||| |||||||||| | ||||||
Sbjct: 106253 gcattgattgaaggcattgaacaagacacgggggattctaaatcttcaa 106301
>gb|AC098833.2 | Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1288_A07,
complete sequence
Length = 122120
Score = 172 bits (87), Expect = 3e-39
Identities = 102/107 (95%)
Strand = Plus / Plus
Query: 123 agatgtcgctgacggaggtcaggctcggcgaggaggtgtggctcacatgcctctcccacg 182
||||||||||||||||||||||| |||| ||||||||||||||||| |||||||||||||
Sbjct: 5795 agatgtcgctgacggaggtcaggatcggggaggaggtgtggctcacctgcctctcccacg 5854
Query: 183 ccctcaccaccgagaccgaggaggtcatgggcctcctcctcggcgac 229
|||||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct: 5855 ccctcaccaccgagacggaggaggtcatgggcctcctcttcggcgac 5901
Score = 135 bits (68), Expect = 6e-28
Identities = 128/148 (86%)
Strand = Plus / Plus
Query: 918 agtggtgcagagtatagaaggaaggaggtgccacttaaagtattccctacaaggcatctg 977
||||||||||| ||| ||| ||||||||||||||| | ||||| || || |||||||||
Sbjct: 9806 agtggtgcagaatatgtaagaaaggaggtgccactttatgtatttccgaccaggcatctg 9865
Query: 978 ctaaagctggacactacgttgagttcttactgtggcatgcaacatgtcctttttaaagag 1037
|||||||||||||| || || | ||||||||||| |||||||||||| |||| |||||
Sbjct: 9866 ctaaagctggacaccacattaacttcttactgtgatatgcaacatgtcgttttcgaagag 9925
Query: 1038 gaacaatcagcatataaccaagccatgc 1065
||| ||||||||||||| ||||||||||
Sbjct: 9926 gaaaaatcagcatataatcaagccatgc 9953
Score = 103 bits (52), Expect = 2e-18
Identities = 70/76 (92%)
Strand = Plus / Plus
Query: 264 tgatatggggcgcgttgccgcagatgaggtgcgagcggaagaaggaccgcgtcgaggtca 323
|||||||||| |||| ||||||||||||||||||||||||||||||| | || |||||||
Sbjct: 6040 tgatatggggggcgtcgccgcagatgaggtgcgagcggaagaaggacagggtggaggtca 6099
Query: 324 accccgcgctgctcgc 339
|||||| |||||||||
Sbjct: 6100 accccgagctgctcgc 6115
Score = 81.8 bits (41), Expect = 8e-12
Identities = 53/57 (92%)
Strand = Plus / Plus
Query: 393 gggtgatcggctggtaccactcgcacccgcatatcactgtcctgccttcccatgtag 449
||||||| || |||||||||||||||||||||||||| || ||||||||||||||||
Sbjct: 6276 gggtgattggatggtaccactcgcacccgcatatcaccgttctgccttcccatgtag 6332
Score = 69.9 bits (35), Expect = 3e-08
Identities = 78/91 (85%), Gaps = 1/91 (1%)
Strand = Plus / Plus
Query: 448 agatgtgcgaacccaggctatgttttcagttgctagatccaggttttgttggattgatat 507
|||||| || |||||||| |||||| |||||| | || ||||||||||| || ||||||
Sbjct: 6876 agatgttcggacccaggcaatgttt-cagttgatggagccaggttttgtgggtctgatat 6934
Query: 508 tttcctgttttagtgaagatgctcaaaaggt 538
| || |||||||| |||||||||||||||||
Sbjct: 6935 tctcttgttttagcgaagatgctcaaaaggt 6965
Score = 69.9 bits (35), Expect = 3e-08
Identities = 68/79 (86%)
Strand = Plus / Plus
Query: 1078 gtgatgggaagatgcacccacttacatctatgcaccatacctccacatacaatgcttctc 1137
||||||||||||| ||||||||||||||||| |||||| | || |||||||| | ||||
Sbjct: 10051 gtgatgggaagatccacccacttacatctattcaccatgcatctacatacaactcatctc 10110
Query: 1138 tatgcaaactgatggaata 1156
| |||||| | ||||||||
Sbjct: 10111 tctgcaaattaatggaata 10129
Score = 60.0 bits (30), Expect = 3e-05
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 619 atccagtcattgaccttgaatcatcttggagttc 652
||||||||||| ||||||||||||||||||||||
Sbjct: 7139 atccagtcattaaccttgaatcatcttggagttc 7172
Score = 60.0 bits (30), Expect = 3e-05
Identities = 48/54 (88%)
Strand = Plus / Plus
Query: 1161 ttgagccctgctataggtgtgcttcaggaccgtgtgaaagaaaatgaacttcgg 1214
||||||||||||||| ||| |||||||| ||| |||| |||||||||||||||
Sbjct: 10224 ttgagccctgctataactgtacttcaggatcgtctgaaggaaaatgaacttcgg 10277
Score = 56.0 bits (28), Expect = 4e-04
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 1219 ctatgctattggaggaggctaaacaactggaggccgagaa 1258
|||||||| ||||||||||||||||||| ||||| |||||
Sbjct: 10357 ctatgctaatggaggaggctaaacaacttgaggcagagaa 10396
Score = 50.1 bits (25), Expect = 0.027
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 535 aggttgggaaaatccaagtgattgccttccagtctcttgatggaa 579
||||||| ||||||||||||||||| || ||||| |||| |||||
Sbjct: 7067 aggttggaaaaatccaagtgattgcttttcagtcacttggtggaa 7111
Score = 50.1 bits (25), Expect = 0.027
Identities = 43/49 (87%)
Strand = Plus / Plus
Query: 669 gcattaattgagggcattgaacatgacactggggattctagagcttcaa 717
||||| ||||| ||||||||||| ||||| |||||||||| | ||||||
Sbjct: 7195 gcattgattgaaggcattgaacaagacacgggggattctaaatcttcaa 7243
>dbj|AP008211.1 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5
Length = 29737217
Score = 172 bits (87), Expect = 3e-39
Identities = 102/107 (95%)
Strand = Plus / Plus
Query: 123 agatgtcgctgacggaggtcaggctcggcgaggaggtgtggctcacatgcctctcccacg 182
||||||||||||||||||||||| |||| ||||||||||||||||| |||||||||||||
Sbjct: 26723856 agatgtcgctgacggaggtcaggatcggggaggaggtgtggctcacctgcctctcccacg 26723915
Query: 183 ccctcaccaccgagaccgaggaggtcatgggcctcctcctcggcgac 229
|||||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct: 26723916 ccctcaccaccgagacggaggaggtcatgggcctcctcttcggcgac 26723962
Score = 135 bits (68), Expect = 6e-28
Identities = 128/148 (86%)
Strand = Plus / Plus
Query: 918 agtggtgcagagtatagaaggaaggaggtgccacttaaagtattccctacaaggcatctg 977
||||||||||| ||| ||| ||||||||||||||| | ||||| || || |||||||||
Sbjct: 26727867 agtggtgcagaatatgtaagaaaggaggtgccactttatgtatttccgaccaggcatctg 26727926
Query: 978 ctaaagctggacactacgttgagttcttactgtggcatgcaacatgtcctttttaaagag 1037
|||||||||||||| || || | ||||||||||| |||||||||||| |||| |||||
Sbjct: 26727927 ctaaagctggacaccacattaacttcttactgtgatatgcaacatgtcgttttcgaagag 26727986
Query: 1038 gaacaatcagcatataaccaagccatgc 1065
||| ||||||||||||| ||||||||||
Sbjct: 26727987 gaaaaatcagcatataatcaagccatgc 26728014
Score = 103 bits (52), Expect = 2e-18
Identities = 70/76 (92%)
Strand = Plus / Plus
Query: 264 tgatatggggcgcgttgccgcagatgaggtgcgagcggaagaaggaccgcgtcgaggtca 323
|||||||||| |||| ||||||||||||||||||||||||||||||| | || |||||||
Sbjct: 26724101 tgatatggggggcgtcgccgcagatgaggtgcgagcggaagaaggacagggtggaggtca 26724160
Query: 324 accccgcgctgctcgc 339
|||||| |||||||||
Sbjct: 26724161 accccgagctgctcgc 26724176
Score = 81.8 bits (41), Expect = 8e-12
Identities = 53/57 (92%)
Strand = Plus / Plus
Query: 393 gggtgatcggctggtaccactcgcacccgcatatcactgtcctgccttcccatgtag 449
||||||| || |||||||||||||||||||||||||| || ||||||||||||||||
Sbjct: 26724337 gggtgattggatggtaccactcgcacccgcatatcaccgttctgccttcccatgtag 26724393
Score = 69.9 bits (35), Expect = 3e-08
Identities = 78/91 (85%), Gaps = 1/91 (1%)
Strand = Plus / Plus
Query: 448 agatgtgcgaacccaggctatgttttcagttgctagatccaggttttgttggattgatat 507
|||||| || |||||||| |||||| |||||| | || ||||||||||| || ||||||
Sbjct: 26724937 agatgttcggacccaggcaatgttt-cagttgatggagccaggttttgtgggtctgatat 26724995
Query: 508 tttcctgttttagtgaagatgctcaaaaggt 538
| || |||||||| |||||||||||||||||
Sbjct: 26724996 tctcttgttttagcgaagatgctcaaaaggt 26725026
Score = 69.9 bits (35), Expect = 3e-08
Identities = 68/79 (86%)
Strand = Plus / Plus
Query: 1078 gtgatgggaagatgcacccacttacatctatgcaccatacctccacatacaatgcttctc 1137
||||||||||||| ||||||||||||||||| |||||| | || |||||||| | ||||
Sbjct: 26728112 gtgatgggaagatccacccacttacatctattcaccatgcatctacatacaactcatctc 26728171
Query: 1138 tatgcaaactgatggaata 1156
| |||||| | ||||||||
Sbjct: 26728172 tctgcaaattaatggaata 26728190
Score = 60.0 bits (30), Expect = 3e-05
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 619 atccagtcattgaccttgaatcatcttggagttc 652
||||||||||| ||||||||||||||||||||||
Sbjct: 26725200 atccagtcattaaccttgaatcatcttggagttc 26725233
Score = 60.0 bits (30), Expect = 3e-05
Identities = 48/54 (88%)
Strand = Plus / Plus
Query: 1161 ttgagccctgctataggtgtgcttcaggaccgtgtgaaagaaaatgaacttcgg 1214
||||||||||||||| ||| |||||||| ||| |||| |||||||||||||||
Sbjct: 26728285 ttgagccctgctataactgtacttcaggatcgtctgaaggaaaatgaacttcgg 26728338
Score = 56.0 bits (28), Expect = 4e-04
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 1219 ctatgctattggaggaggctaaacaactggaggccgagaa 1258
|||||||| ||||||||||||||||||| ||||| |||||
Sbjct: 26728418 ctatgctaatggaggaggctaaacaacttgaggcagagaa 26728457
Score = 50.1 bits (25), Expect = 0.027
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 535 aggttgggaaaatccaagtgattgccttccagtctcttgatggaa 579
||||||| ||||||||||||||||| || ||||| |||| |||||
Sbjct: 26725128 aggttggaaaaatccaagtgattgcttttcagtcacttggtggaa 26725172
Score = 50.1 bits (25), Expect = 0.027
Identities = 43/49 (87%)
Strand = Plus / Plus
Query: 669 gcattaattgagggcattgaacatgacactggggattctagagcttcaa 717
||||| ||||| ||||||||||| ||||| |||||||||| | ||||||
Sbjct: 26725256 gcattgattgaaggcattgaacaagacacgggggattctaaatcttcaa 26725304
>gb|AY864674.1 | Escherichia coli strain 9717 putative type III secretion apparatus
lipoprotein (Z4180), putative type III secretion
apparatus protein (Z4181), Z4182 (Z4182), Z4184 (Z4184),
putative type III secretion apparatus integral membrane
protein component (Z4186), type III secretion apparatus
protein (Z4188), and putative type III secretion
apparatus integral membrane protein component (Z4189)
genes, complete cds
Length = 7889
Score = 42.1 bits (21), Expect = 6.7
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 847 ctgttgatcaagatggttcag 867
|||||||||||||||||||||
Sbjct: 1439 ctgttgatcaagatggttcag 1459
>gb|AY864672.1 | Escherichia coli strain 36-5 putative type III secretion apparatus
lipoprotein (Z4180), Z4184 (Z4184), putative type III
secretion apparatus integral membrane protein component
(Z4186), type III secretion apparatus protein (Z4188),
putative type III secretion apparatus integral membrane
protein component (Z4189), type III secretion apparatus
protein (Z4191), type III secretion apparatus protein
(Z4193), putative type III secretion apparatus protein
(Z4194), type III secretion apparatus protein (Z4195),
putative secreted protein (Z4196), putative type III
secretion apparatus protein (Z4197), putative type III
secretion apparatus regulatory protein (Z4198), and Z4199
(Z4199) genes, complete cds
Length = 17763
Score = 42.1 bits (21), Expect = 6.7
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 847 ctgttgatcaagatggttcag 867
|||||||||||||||||||||
Sbjct: 1439 ctgttgatcaagatggttcag 1459
>emb|AL929150.12 | Zebrafish DNA sequence from clone CH211-196H16 in linkage group 1,
complete sequence
Length = 229480
Score = 42.1 bits (21), Expect = 6.7
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 33 caacacaacacaacacactcc 53
|||||||||||||||||||||
Sbjct: 25592 caacacaacacaacacactcc 25572
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
Posted date: Dec 3, 2006 5:45 PM
Number of letters in database: 18,610,659,111
Number of sequences in database: 4,638,285
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4638285
Number of Hits to DB: 290,175,407
Number of extensions: 15510418
Number of successful extensions: 302645
Number of sequences better than 10.0: 49
Number of HSP's gapped: 302626
Number of HSP's successfully gapped: 111
Length of query: 1748
Length of database: 18,610,659,111
Length adjustment: 23
Effective length of query: 1725
Effective length of database: 18,503,978,556
Effective search space: 31919363009100
Effective search space used: 31919363009100
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 14 (28.2 bits)