>Q91WD1:RPC4_MOUSE DNA-directed RNA polymerase III subunit RPC4 - Mus musculus (Mouse)|
          Length = 398
 Score = 57.4 bits (137), Expect = 1e-07
 Identities = 30/76 (39%), Positives = 45/76 (59%), Gaps = 3/76 (3%)
 Frame = +3

Query: 804  IKDLPGGLMGKILVYKSGKVKMKIGDALFDVSPGSNCMFVQEAVAV---NTRENHCCALG 974
            + DL  G +GK+L+ KSGKV++ +G    DV+ G+ C F+QE V+V   ++R      LG
Sbjct: 318  LADLTEGQVGKLLIRKSGKVQLLLGKVTLDVTMGTTCSFLQELVSVGLGDSRTGEMTVLG 377

Query: 975  EVSKRAVVTPDVAHLL 1022
             V  + V +PD   LL
Sbjct: 378  HVKHKLVCSPDFESLL 393

>P05423:RPC4_HUMAN DNA-directed RNA polymerase III subunit RPC4 - Homo sapiens (Human)|
          Length = 398

 Score = 55.5 bits (132), Expect = 5e-07
 Identities = 29/76 (38%), Positives = 45/76 (59%), Gaps = 3/76 (3%)
 Frame = +3

Query: 804  IKDLPGGLMGKILVYKSGKVKMKIGDALFDVSPGSNCMFVQEAVAV---NTRENHCCALG 974
            + DL  G +GK+L+ KSG+V++ +G    DV+ G+ C F+QE V+V   ++R      LG
Sbjct: 318  LADLTEGQVGKLLIRKSGRVQLLLGKVTLDVTMGTACSFLQELVSVGLGDSRTGEMTVLG 377

Query: 975  EVSKRAVVTPDVAHLL 1022
             V  + V +PD   LL
Sbjct: 378  HVKHKLVCSPDFESLL 393

>Q5E9Z7:RPC4_BOVIN DNA-directed RNA polymerase III subunit RPC4 - Bos taurus (Bovine)|
          Length = 398

 Score = 54.7 bits (130), Expect = 9e-07
 Identities = 28/76 (36%), Positives = 45/76 (59%), Gaps = 3/76 (3%)
 Frame = +3

Query: 804  IKDLPGGLMGKILVYKSGKVKMKIGDALFDVSPGSNCMFVQEAVAV---NTRENHCCALG 974
            + DL  G +GK+L+ KSGKV++ +G    DV+ G+ C F+QE V+V   ++R      LG
Sbjct: 318  LADLTEGQVGKLLIRKSGKVQLLLGKVTLDVTMGTTCSFLQELVSVGLGDSRTGDMTVLG 377

Query: 975  EVSKRAVVTPDVAHLL 1022
             +  + V +P+   LL
Sbjct: 378  HIKHKLVCSPNFESLL 393

>P25441:RPC4_YEAST DNA-directed RNA polymerase III subunit RPC4 - Saccharomyces|
            cerevisiae (Baker's yeast)
          Length = 422

 Score = 50.4 bits (119), Expect = 2e-05
 Identities = 30/101 (29%), Positives = 54/101 (53%), Gaps = 3/101 (2%)
 Frame = +3

Query: 717  EEPNTGSEENVEPATSSK-VARGQTLPGSKIKDLPGGLMGKILVYKSGKVKMKIGDALFD 893
            EE      +  +P+   K + +  T      ++L  G +G I V+KSGK+ +KIG+ + D
Sbjct: 323  EEKEDMETQASDPSKKKKNIKKKDTKDALSTREL-AGKVGSIRVHKSGKLSVKIGNVVMD 381

Query: 894  VSPGSNCMFVQEAVAVNTRENHCCA--LGEVSKRAVVTPDV 1010
            +  G+   F+Q+ +A++  ++   A  LG V  + VVTP +
Sbjct: 382  IGKGAETTFLQDVIALSIADDASSAELLGRVDGKIVVTPQI 422

>Q8MT36:MES4_DROME Probable histone-lysine N-methyltransferase Mes-4 - Drosophila|
           melanogaster (Fruit fly)
          Length = 1427

 Score = 37.0 bits (84), Expect = 0.19
 Identities = 18/57 (31%), Positives = 28/57 (49%)
 Frame = -1

Query: 545 ISRVGPPKWESYRIVAMGIVPWIDVFFWCFWRCRIIPRRKRSCIGRVPLPKCNLSID 375
           +S V  P W +Y++   G + W  VF +CFW C + P      +G +P      S+D
Sbjct: 382 LSIVTDPGWPTYQV---GDLFWGKVFSYCFWPCMVCPDPLGQIVGNMPSHPQRSSLD 435

>Q6LXY6:IF2G_METMP Translation initiation factor 2 gamma subunit - Methanococcus|
           maripaludis
          Length = 410

 Score = 33.5 bits (75), Expect = 2.1
 Identities = 20/61 (32%), Positives = 32/61 (52%)
 Frame = +3

Query: 723 PNTGSEENVEPATSSKVARGQTLPGSKIKDLPGGLMGKILVYKSGKVKMKIGDALFDVSP 902
           P    +E V P      +     PGS+IKDL GG++G  ++  +    +K+GD L ++ P
Sbjct: 200 PTPERDETVSPKLYVARSFDVNKPGSEIKDLKGGVIGGSIIQGA----LKVGDEL-EIKP 254

Query: 903 G 905
           G
Sbjct: 255 G 255

>P22422:VE6_HPV47 Protein E6 - Human papillomavirus type 47|
          Length = 156

 Score = 32.7 bits (73), Expect = 3.6
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = -1

Query: 815 QIFDLRARECLPPCHFRACGRFNILLRASIWFFNRLCLLW 696
           Q+ D+   +CL PC+F  CGRF   L    + + +L L+W
Sbjct: 27  QLLDIPLVDCLLPCNF--CGRFLDYLEVCEFDYKKLTLIW 64

>Q9EPU7:Z354C_RAT Zinc finger protein 354C - Rattus norvegicus (Rat)|
          Length = 560

 Score = 32.0 bits (71), Expect = 6.1
 Identities = 12/34 (35%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = -3

Query: 1329 CKYKHLHFRENLFEWPEHGTKITSRAYLS-YQNC 1231
            C++K +H +E L++W E+GT     + L+ +Q C
Sbjct: 514  CRHKKVHLKERLYKWKEYGTPFMYGSSLAPHQRC 547


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 230,194,730
Number of extensions: 5052093
Number of successful extensions: 12294
Number of sequences better than 10.0: 8
Number of HSP's gapped: 12285
Number of HSP's successfully gapped: 8
Length of query: 447
Length of database: 100,686,439
Length adjustment: 116
Effective length of query: 331
Effective length of database: 68,868,219
Effective search space: 22795380489
Effective search space used: 22795380489
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)