ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf29l11 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_001059189.1| Oryza sativa (japonica cultivar-group) Os04g0394500 (Os04g0394500) mRNA, complete cds Length = 1020 Score = 172 bits (87), Expect = 2e-39 Identities = 210/251 (83%) Strand = Plus / Plus Query: 794 tggctctaagatcaaagatttgccaggaggtctcatggggaagatactcgtttataagag 853 |||||||||| ||||||| | |||| |||| |||||||||||||||| || |||| ||| Sbjct: 636 tggctctaagctcaaagaccttccagaaggtttcatggggaagatacttgtatataggag 695 Query: 854 tggtaaagtgaagatgaagataggagatgcactgtttgatgtatctcccggttcaaattg 913 |||||||||||||||||||| |||||| |||| |||||||| ||||| ||||||||||| Sbjct: 696 cggtaaagtgaagatgaagatcggagattcactctttgatgtctctccgggttcaaattg 755 Query: 914 catgtttgtccaggaggctgtggcggttaacacaagagaaaatcattgctgcgcccttgg 973 ||||||||||||||||| || ||| ||||| | |||||||| || |||||| || | || Sbjct: 756 catgtttgtccaggaggttgcggcaattaacgccagagaaaagcactgctgcaccttggg 815 Query: 974 agaggtcagtaagcgcgcagttgttacccccgacgttgcccatctgcttggttctactga 1033 |||| |||| |||||||| |||| ||||| ||| | | |||||||| | |||| || Sbjct: 816 agagatcagcaagcgcgcgattgtaaccccggacatcgagcatctgctggattctttcga 875 Query: 1034 caagatggaag 1044 ||||||||||| Sbjct: 876 caagatggaag 886 Score = 147 bits (74), Expect = 1e-31 Identities = 152/178 (85%) Strand = Plus / Plus Query: 461 accaaaagaatacgtcgatccatgggactatacccatagcgactatcctataactctccc 520 |||||||||||| || || ||||||||||||||||| || ||||||||| | |||||||| Sbjct: 324 accaaaagaatatgttgaaccatgggactatacccacagtgactatcctgttactctccc 383 Query: 521 acttaggaggccctactctggagatcctgagattcttgatgaagaggagtttggagagaa 580 ||| ||||| || || |||||||||||||| |||||| |||||||||||||||||||| Sbjct: 384 actgaggagaccgtattctggagatcctgaaattcttaatgaagaggagtttggagagtc 443 Query: 581 ttctgccagcagagctcactatggcgaatttacggcagcagatgaacttggattaatg 638 |||||||| | |||| || |||| ||||| || ||||||| ||||||||| ||||| Sbjct: 444 ttctgccaccggagcccaagatggtgaattaaccacagcagaagaacttggactaatg 501 Score = 125 bits (63), Expect = 4e-25 Identities = 198/243 (81%) Strand = Plus / Plus Query: 188 tcctcgcaaaggaggactcaaattcgcgcccaagaagcctccgaagaaacctgcaaaggt 247 ||||||||| ||||| || ||||| || |||||| | ||| |||||| || ||||| | Sbjct: 45 tcctcgcaagggagggcttaaatttgcacccaaggttcgtcctaagaaagctccaaagat 104 Query: 248 tgtcccaaaaacggagcctgctgaggagagcaaggatgatatcattgacaaggagttgtt 307 ||||| ||||||||||| |||||||| ||||||||||| | | | || || ||| |||| Sbjct: 105 cgtcccgaaaacggagccggctgaggaaagcaaggatgaaaccgtagataaagagctgtt 164 Query: 308 gatgaaactcaagacatcgcagatcaccgatccctttggaagaagacccaagattgagaa 367 |||||| || ||||||||||||| ||| |||||||||| |||| | |||| |||||| Sbjct: 165 gatgaagcttaagacatcgcagagcacagatccctttgtgagaaaatttaagactgagaa 224 Query: 368 aaaagaaatcaatactcaggttgcatttgggcaagggaactcttcctatgcaagatcttt 427 ||| ||||| |||||| ||||||||||| || |||||||| || ||||||||||| || Sbjct: 225 aaaggaaatgcgtactcaagttgcatttggacaggggaactcgtcgtatgcaagatcatt 284 Query: 428 tcc 430 ||| Sbjct: 285 tcc 287
>emb|CR855103.1| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0718E12, complete sequence Length = 90431 Score = 99.6 bits (50), Expect = 3e-17 Identities = 89/102 (87%) Strand = Plus / Minus Query: 794 tggctctaagatcaaagatttgccaggaggtctcatggggaagatactcgtttataagag 853 |||||||||| ||||||| | |||| |||| |||||||||||||||| || |||| ||| Sbjct: 62603 tggctctaagctcaaagaccttccagaaggtttcatggggaagatacttgtatataggag 62544 Query: 854 tggtaaagtgaagatgaagataggagatgcactgtttgatgt 895 |||||||||||||||||||| |||||| |||| |||||||| Sbjct: 62543 cggtaaagtgaagatgaagatcggagattcactctttgatgt 62502 Score = 99.6 bits (50), Expect = 3e-17 Identities = 89/102 (87%) Strand = Plus / Minus Query: 794 tggctctaagatcaaagatttgccaggaggtctcatggggaagatactcgtttataagag 853 |||||||||| ||||||| | |||| |||| |||||||||||||||| || |||| ||| Sbjct: 76805 tggctctaagctcaaagaccttccagaaggtttcatggggaagatacttgtatataggag 76746 Query: 854 tggtaaagtgaagatgaagataggagatgcactgtttgatgt 895 |||||||||||||||||||| |||||| |||| |||||||| Sbjct: 76745 cggtaaagtgaagatgaagatcggagattcactctttgatgt 76704 Score = 81.8 bits (41), Expect = 6e-12 Identities = 128/157 (81%) Strand = Plus / Minus Query: 897 tctcccggttcaaattgcatgtttgtccaggaggctgtggcggttaacacaagagaaaat 956 ||||| |||||||||||||||||||||||||||| || ||| ||||| | |||||||| Sbjct: 62414 tctccgggttcaaattgcatgtttgtccaggaggttgcggcaattaacgccagagaaaag 62355 Query: 957 cattgctgcgcccttggagaggtcagtaagcgcgcagttgttacccccgacgttgcccat 1016 || |||||| || | |||||| |||| |||||||| |||| ||||| ||| | | ||| Sbjct: 62354 cactgctgcaccttgggagagatcagcaagcgcgcgattgtaaccccggacatcgagcat 62295 Query: 1017 ctgcttggttctactgacaagatggaagaataagccc 1053 ||||| | |||| ||||||||||||| ||||||| Sbjct: 62294 ctgctggattctttcgacaagatggaagcgtaagccc 62258 Score = 81.8 bits (41), Expect = 6e-12 Identities = 128/157 (81%) Strand = Plus / Minus Query: 897 tctcccggttcaaattgcatgtttgtccaggaggctgtggcggttaacacaagagaaaat 956 ||||| |||||||||||||||||||||||||||| || ||| ||||| | |||||||| Sbjct: 76616 tctccgggttcaaattgcatgtttgtccaggaggttgcggcaattaacgccagagaaaag 76557 Query: 957 cattgctgcgcccttggagaggtcagtaagcgcgcagttgttacccccgacgttgcccat 1016 || |||||| || | |||||| |||| |||||||| |||| ||||| ||| | | ||| Sbjct: 76556 cactgctgcaccttgggagagatcagcaagcgcgcgattgtaaccccggacatcgagcat 76497 Query: 1017 ctgcttggttctactgacaagatggaagaataagccc 1053 ||||| | |||| ||||||||||||| ||||||| Sbjct: 76496 ctgctggattctttcgacaagatggaagcgtaagccc 76460 Score = 65.9 bits (33), Expect = 4e-07 Identities = 57/65 (87%) Strand = Plus / Minus Query: 485 ggactatacccatagcgactatcctataactctcccacttaggaggccctactctggaga 544 |||||||||||| || ||||||||| | ||||||||||| ||||| || || |||||||| Sbjct: 63177 ggactatacccacagtgactatcctgttactctcccactgaggagaccgtattctggaga 63118 Query: 545 tcctg 549 ||||| Sbjct: 63117 tcctg 63113 Score = 65.9 bits (33), Expect = 4e-07 Identities = 57/65 (87%) Strand = Plus / Minus Query: 485 ggactatacccatagcgactatcctataactctcccacttaggaggccctactctggaga 544 |||||||||||| || ||||||||| | ||||||||||| ||||| || || |||||||| Sbjct: 77379 ggactatacccacagtgactatcctgttactctcccactgaggagaccgtattctggaga 77320 Query: 545 tcctg 549 ||||| Sbjct: 77319 tcctg 77315 Score = 63.9 bits (32), Expect = 1e-06 Identities = 74/88 (84%) Strand = Plus / Minus Query: 552 attcttgatgaagaggagtttggagagaattctgccagcagagctcactatggcgaattt 611 |||||| |||||||||||||||||||| |||||||| | |||| || |||| ||||| Sbjct: 63032 attcttaatgaagaggagtttggagagtcttctgccaccggagcccaagatggtgaatta 62973 Query: 612 acggcagcagatgaacttggattaatgg 639 || ||||||| ||||||||| |||||| Sbjct: 62972 accacagcagaagaacttggactaatgg 62945 Score = 63.9 bits (32), Expect = 1e-06 Identities = 74/88 (84%) Strand = Plus / Minus Query: 552 attcttgatgaagaggagtttggagagaattctgccagcagagctcactatggcgaattt 611 |||||| |||||||||||||||||||| |||||||| | |||| || |||| ||||| Sbjct: 77234 attcttaatgaagaggagtttggagagtcttctgccaccggagcccaagatggtgaatta 77175 Query: 612 acggcagcagatgaacttggattaatgg 639 || ||||||| ||||||||| |||||| Sbjct: 77174 accacagcagaagaacttggactaatgg 77147 Score = 54.0 bits (27), Expect = 0.001 Identities = 45/51 (88%) Strand = Plus / Minus Query: 380 tactcaggttgcatttgggcaagggaactcttcctatgcaagatcttttcc 430 |||||| ||||||||||| || |||||||| || ||||||||||| ||||| Sbjct: 63579 tactcaagttgcatttggacaggggaactcgtcgtatgcaagatcatttcc 63529 Score = 54.0 bits (27), Expect = 0.001 Identities = 45/51 (88%) Strand = Plus / Minus Query: 380 tactcaggttgcatttgggcaagggaactcttcctatgcaagatcttttcc 430 |||||| ||||||||||| || |||||||| || ||||||||||| ||||| Sbjct: 77781 tactcaagttgcatttggacaggggaactcgtcgtatgcaagatcatttcc 77731 Score = 52.0 bits (26), Expect = 0.005 Identities = 59/70 (84%) Strand = Plus / Minus Query: 260 ggagcctgctgaggagagcaaggatgatatcattgacaaggagttgttgatgaaactcaa 319 |||||| |||||||| ||||||||||| | | | || || ||| |||||||||| || || Sbjct: 64556 ggagccggctgaggaaagcaaggatgaaaccgtagataaagagctgttgatgaagcttaa 64497 Query: 320 gacatcgcag 329 |||||||||| Sbjct: 64496 gacatcgcag 64487 Score = 52.0 bits (26), Expect = 0.005 Identities = 59/70 (84%) Strand = Plus / Minus Query: 260 ggagcctgctgaggagagcaaggatgatatcattgacaaggagttgttgatgaaactcaa 319 |||||| |||||||| ||||||||||| | | | || || ||| |||||||||| || || Sbjct: 78759 ggagccggctgaggaaagcaaggatgaaaccgtagataaagagctgttgatgaagcttaa 78700 Query: 320 gacatcgcag 329 |||||||||| Sbjct: 78699 gacatcgcag 78690 Score = 42.1 bits (21), Expect = 5.1 Identities = 42/49 (85%) Strand = Plus / Minus Query: 655 cacagttgctcctcttccagttacctgtgtctcttcctttaccaaagca 703 |||||||||| |||||||| | |||| |||||||| ||||||||||| Sbjct: 62757 cacagttgcttttcttccagatgcctgcatctcttccattaccaaagca 62709 Score = 42.1 bits (21), Expect = 5.1 Identities = 42/49 (85%) Strand = Plus / Minus Query: 655 cacagttgctcctcttccagttacctgtgtctcttcctttaccaaagca 703 |||||||||| |||||||| | |||| |||||||| ||||||||||| Sbjct: 76959 cacagttgcttttcttccagatgcctgcatctcttccattaccaaagca 76911
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4 Length = 35498469 Score = 99.6 bits (50), Expect = 3e-17 Identities = 89/102 (87%) Strand = Plus / Minus Query: 794 tggctctaagatcaaagatttgccaggaggtctcatggggaagatactcgtttataagag 853 |||||||||| ||||||| | |||| |||| |||||||||||||||| || |||| ||| Sbjct: 19410029 tggctctaagctcaaagaccttccagaaggtttcatggggaagatacttgtatataggag 19409970 Query: 854 tggtaaagtgaagatgaagataggagatgcactgtttgatgt 895 |||||||||||||||||||| |||||| |||| |||||||| Sbjct: 19409969 cggtaaagtgaagatgaagatcggagattcactctttgatgt 19409928 Score = 81.8 bits (41), Expect = 6e-12 Identities = 128/157 (81%) Strand = Plus / Minus Query: 897 tctcccggttcaaattgcatgtttgtccaggaggctgtggcggttaacacaagagaaaat 956 ||||| |||||||||||||||||||||||||||| || ||| ||||| | |||||||| Sbjct: 19409840 tctccgggttcaaattgcatgtttgtccaggaggttgcggcaattaacgccagagaaaag 19409781 Query: 957 cattgctgcgcccttggagaggtcagtaagcgcgcagttgttacccccgacgttgcccat 1016 || |||||| || | |||||| |||| |||||||| |||| ||||| ||| | | ||| Sbjct: 19409780 cactgctgcaccttgggagagatcagcaagcgcgcgattgtaaccccggacatcgagcat 19409721 Query: 1017 ctgcttggttctactgacaagatggaagaataagccc 1053 ||||| | |||| ||||||||||||| ||||||| Sbjct: 19409720 ctgctggattctttcgacaagatggaagcgtaagccc 19409684 Score = 65.9 bits (33), Expect = 4e-07 Identities = 57/65 (87%) Strand = Plus / Minus Query: 485 ggactatacccatagcgactatcctataactctcccacttaggaggccctactctggaga 544 |||||||||||| || ||||||||| | ||||||||||| ||||| || || |||||||| Sbjct: 19410603 ggactatacccacagtgactatcctgttactctcccactgaggagaccgtattctggaga 19410544 Query: 545 tcctg 549 ||||| Sbjct: 19410543 tcctg 19410539 Score = 63.9 bits (32), Expect = 1e-06 Identities = 74/88 (84%) Strand = Plus / Minus Query: 552 attcttgatgaagaggagtttggagagaattctgccagcagagctcactatggcgaattt 611 |||||| |||||||||||||||||||| |||||||| | |||| || |||| ||||| Sbjct: 19410458 attcttaatgaagaggagtttggagagtcttctgccaccggagcccaagatggtgaatta 19410399 Query: 612 acggcagcagatgaacttggattaatgg 639 || ||||||| ||||||||| |||||| Sbjct: 19410398 accacagcagaagaacttggactaatgg 19410371 Score = 54.0 bits (27), Expect = 0.001 Identities = 45/51 (88%) Strand = Plus / Minus Query: 380 tactcaggttgcatttgggcaagggaactcttcctatgcaagatcttttcc 430 |||||| ||||||||||| || |||||||| || ||||||||||| ||||| Sbjct: 19411005 tactcaagttgcatttggacaggggaactcgtcgtatgcaagatcatttcc 19410955 Score = 52.0 bits (26), Expect = 0.005 Identities = 59/70 (84%) Strand = Plus / Minus Query: 260 ggagcctgctgaggagagcaaggatgatatcattgacaaggagttgttgatgaaactcaa 319 |||||| |||||||| ||||||||||| | | | || || ||| |||||||||| || || Sbjct: 19411982 ggagccggctgaggaaagcaaggatgaaaccgtagataaagagctgttgatgaagcttaa 19411923 Query: 320 gacatcgcag 329 |||||||||| Sbjct: 19411922 gacatcgcag 19411913 Score = 42.1 bits (21), Expect = 5.1 Identities = 42/49 (85%) Strand = Plus / Minus Query: 655 cacagttgctcctcttccagttacctgtgtctcttcctttaccaaagca 703 |||||||||| |||||||| | |||| |||||||| ||||||||||| Sbjct: 19410183 cacagttgcttttcttccagatgcctgcatctcttccattaccaaagca 19410135
>emb|AL606621.3|OSJN00054 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0072K14, complete sequence Length = 139855 Score = 99.6 bits (50), Expect = 3e-17 Identities = 89/102 (87%) Strand = Plus / Minus Query: 794 tggctctaagatcaaagatttgccaggaggtctcatggggaagatactcgtttataagag 853 |||||||||| ||||||| | |||| |||| |||||||||||||||| || |||| ||| Sbjct: 61295 tggctctaagctcaaagaccttccagaaggtttcatggggaagatacttgtatataggag 61236 Query: 854 tggtaaagtgaagatgaagataggagatgcactgtttgatgt 895 |||||||||||||||||||| |||||| |||| |||||||| Sbjct: 61235 cggtaaagtgaagatgaagatcggagattcactctttgatgt 61194 Score = 81.8 bits (41), Expect = 6e-12 Identities = 128/157 (81%) Strand = Plus / Minus Query: 897 tctcccggttcaaattgcatgtttgtccaggaggctgtggcggttaacacaagagaaaat 956 ||||| |||||||||||||||||||||||||||| || ||| ||||| | |||||||| Sbjct: 61106 tctccgggttcaaattgcatgtttgtccaggaggttgcggcaattaacgccagagaaaag 61047 Query: 957 cattgctgcgcccttggagaggtcagtaagcgcgcagttgttacccccgacgttgcccat 1016 || |||||| || | |||||| |||| |||||||| |||| ||||| ||| | | ||| Sbjct: 61046 cactgctgcaccttgggagagatcagcaagcgcgcgattgtaaccccggacatcgagcat 60987 Query: 1017 ctgcttggttctactgacaagatggaagaataagccc 1053 ||||| | |||| ||||||||||||| ||||||| Sbjct: 60986 ctgctggattctttcgacaagatggaagcgtaagccc 60950 Score = 65.9 bits (33), Expect = 4e-07 Identities = 57/65 (87%) Strand = Plus / Minus Query: 485 ggactatacccatagcgactatcctataactctcccacttaggaggccctactctggaga 544 |||||||||||| || ||||||||| | ||||||||||| ||||| || || |||||||| Sbjct: 61869 ggactatacccacagtgactatcctgttactctcccactgaggagaccgtattctggaga 61810 Query: 545 tcctg 549 ||||| Sbjct: 61809 tcctg 61805 Score = 63.9 bits (32), Expect = 1e-06 Identities = 74/88 (84%) Strand = Plus / Minus Query: 552 attcttgatgaagaggagtttggagagaattctgccagcagagctcactatggcgaattt 611 |||||| |||||||||||||||||||| |||||||| | |||| || |||| ||||| Sbjct: 61724 attcttaatgaagaggagtttggagagtcttctgccaccggagcccaagatggtgaatta 61665 Query: 612 acggcagcagatgaacttggattaatgg 639 || ||||||| ||||||||| |||||| Sbjct: 61664 accacagcagaagaacttggactaatgg 61637 Score = 54.0 bits (27), Expect = 0.001 Identities = 45/51 (88%) Strand = Plus / Minus Query: 380 tactcaggttgcatttgggcaagggaactcttcctatgcaagatcttttcc 430 |||||| ||||||||||| || |||||||| || ||||||||||| ||||| Sbjct: 62271 tactcaagttgcatttggacaggggaactcgtcgtatgcaagatcatttcc 62221 Score = 52.0 bits (26), Expect = 0.005 Identities = 59/70 (84%) Strand = Plus / Minus Query: 260 ggagcctgctgaggagagcaaggatgatatcattgacaaggagttgttgatgaaactcaa 319 |||||| |||||||| ||||||||||| | | | || || ||| |||||||||| || || Sbjct: 63248 ggagccggctgaggaaagcaaggatgaaaccgtagataaagagctgttgatgaagcttaa 63189 Query: 320 gacatcgcag 329 |||||||||| Sbjct: 63188 gacatcgcag 63179 Score = 42.1 bits (21), Expect = 5.1 Identities = 42/49 (85%) Strand = Plus / Minus Query: 655 cacagttgctcctcttccagttacctgtgtctcttcctttaccaaagca 703 |||||||||| |||||||| | |||| |||||||| ||||||||||| Sbjct: 61449 cacagttgcttttcttccagatgcctgcatctcttccattaccaaagca 61401
>gb|AY111233.1| Zea mays CL5635_1 mRNA sequence Length = 659 Score = 81.8 bits (41), Expect = 6e-12 Identities = 50/53 (94%) Strand = Plus / Minus Query: 828 atggggaagatactcgtttataagagtggtaaagtgaagatgaagataggaga 880 |||||||| || ||||| ||||||||||||||||||||||||||||||||||| Sbjct: 341 atggggaaaatgctcgtatataagagtggtaaagtgaagatgaagataggaga 289 Score = 56.0 bits (28), Expect = 3e-04 Identities = 58/68 (85%) Strand = Plus / Minus Query: 525 aggaggccctactctggagatcctgagattcttgatgaagaggagtttggagagaattct 584 |||| ||||||||||||| ||||||| ||||| ||||| || || |||||||| |||| Sbjct: 626 aggaagccctactctggaaatcctgaaattctggatgaggaagaatttggagaatcttct 567 Query: 585 gccagcag 592 |||||||| Sbjct: 566 gccagcag 559
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2 Length = 35954743 Score = 71.9 bits (36), Expect = 6e-09 Identities = 63/72 (87%) Strand = Plus / Minus Query: 825 ctcatggggaagatactcgtttataagagtggtaaagtgaagatgaagataggagatgca 884 ||||||||||||||||| || | || ||||||||| ||||||| ||| | ||||||||| Sbjct: 18653427 ctcatggggaagatacttgtgtgcaatagtggtaaaatgaagataaagctcggagatgca 18653368 Query: 885 ctgtttgatgta 896 |||||||||||| Sbjct: 18653367 ctgtttgatgta 18653356
>dbj|AP004062.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1471_E11 Length = 103912 Score = 71.9 bits (36), Expect = 6e-09 Identities = 63/72 (87%) Strand = Plus / Minus Query: 825 ctcatggggaagatactcgtttataagagtggtaaagtgaagatgaagataggagatgca 884 ||||||||||||||||| || | || ||||||||| ||||||| ||| | ||||||||| Sbjct: 79783 ctcatggggaagatacttgtgtgcaatagtggtaaaatgaagataaagctcggagatgca 79724 Query: 885 ctgtttgatgta 896 |||||||||||| Sbjct: 79723 ctgtttgatgta 79712
>gb|AC022486.4|AC022486 Homo sapiens BAC clone RP11-569J3 from Y, complete sequence Length = 156357 Score = 46.1 bits (23), Expect = 0.33 Identities = 23/23 (100%) Strand = Plus / Plus Query: 530 gccctactctggagatcctgaga 552 ||||||||||||||||||||||| Sbjct: 17478 gccctactctggagatcctgaga 17500
>gb|AC007379.2|AC007379 Homo sapiens BAC clone RP11-143C1 from Y, complete sequence Length = 174082 Score = 46.1 bits (23), Expect = 0.33 Identities = 23/23 (100%) Strand = Plus / Minus Query: 530 gccctactctggagatcctgaga 552 ||||||||||||||||||||||| Sbjct: 120894 gccctactctggagatcctgaga 120872
>gb|DQ373063.1| Simian immunodeficiency virus isolate SIVcpzMB66, complete genome Length = 9281 Score = 44.1 bits (22), Expect = 1.3 Identities = 22/22 (100%) Strand = Plus / Plus Query: 677 acctgtgtctcttcctttacca 698 |||||||||||||||||||||| Sbjct: 8133 acctgtgtctcttcctttacca 8154
>emb|AL732325.6| Human DNA sequence from clone RP11-692N21 on chromosome X Contains part of the SH3KBP1 gene for SH3-domain kinase binding protein 1 (CIN85), complete sequence Length = 96764 Score = 44.1 bits (22), Expect = 1.3 Identities = 22/22 (100%) Strand = Plus / Minus Query: 293 tgacaaggagttgttgatgaaa 314 |||||||||||||||||||||| Sbjct: 59633 tgacaaggagttgttgatgaaa 59612
>gb|AC166487.6| Mus musculus chromosome 1, clone RP23-298A7, complete sequence Length = 187404 Score = 42.1 bits (21), Expect = 5.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 652 caccacagttgctcctcttccagtt 676 |||||||||| |||||||||||||| Sbjct: 168494 caccacagtttctcctcttccagtt 168518
>gb|AC130798.15| Medicago truncatula clone mth2-27f17, complete sequence Length = 92189 Score = 42.1 bits (21), Expect = 5.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 685 ctcttcctttaccaaagcaaa 705 ||||||||||||||||||||| Sbjct: 57660 ctcttcctttaccaaagcaaa 57680
>gb|CP000080.1| Leishmania major strain Friedlin chromosome 29, complete sequence Length = 1212674 Score = 42.1 bits (21), Expect = 5.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 104 tgaacaaggttcttgcgtttg 124 ||||||||||||||||||||| Sbjct: 876327 tgaacaaggttcttgcgtttg 876347
>gb|AC121986.2| Mus musculus BAC clone RP24-293I7 from 10, complete sequence Length = 182686 Score = 42.1 bits (21), Expect = 5.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 357 aagattgagaaaaaagaaatcaata 381 ||||| ||||||||||||||||||| Sbjct: 58452 aagatagagaaaaaagaaatcaata 58476
>gb|AC158753.8| Mus musculus chromosome 5, clone RP23-301E24, complete sequence Length = 190368 Score = 42.1 bits (21), Expect = 5.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 275 gagcaaggatgatatcattga 295 ||||||||||||||||||||| Sbjct: 183279 gagcaaggatgatatcattga 183299
>gb|AC152819.6| Mus musculus BAC clone RP24-572P24 from chromosome 10, complete sequence Length = 185665 Score = 42.1 bits (21), Expect = 5.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 357 aagattgagaaaaaagaaatcaata 381 ||||| ||||||||||||||||||| Sbjct: 36551 aagatagagaaaaaagaaatcaata 36527
>emb|AL137000.6| Human DNA sequence from clone RP11-203I16 on chromosome 13 Contains the gene for KIAA0970 protein, the COX7CP1 cytochrome c oxidase subunit VIIc pseudogene 1, a novel pseudogene, the GPR38 gene for G protein-coupled receptor 38 and a CpG island, complete sequence Length = 163284 Score = 42.1 bits (21), Expect = 5.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 672 cagttacctgtgtctcttcct 692 ||||||||||||||||||||| Sbjct: 128796 cagttacctgtgtctcttcct 128816
>gb|AC158760.4| Mus musculus chromosome 5, clone RP23-319E24, complete sequence Length = 191682 Score = 42.1 bits (21), Expect = 5.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 275 gagcaaggatgatatcattga 295 ||||||||||||||||||||| Sbjct: 172795 gagcaaggatgatatcattga 172775
>emb|AL023801.1|HS786D3 Human DNA sequence from clone RP4-786D3 on chromosome 22q13.31-33, complete sequence Length = 35469 Score = 42.1 bits (21), Expect = 5.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 560 tgaagaggagtttggagagaa 580 ||||||||||||||||||||| Sbjct: 6162 tgaagaggagtttggagagaa 6182
>gb|AC010546.10| Homo sapiens chromosome 16 clone RP11-50O21, complete sequence Length = 181955 Score = 42.1 bits (21), Expect = 5.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 357 aagattgagaaaaaagaaatc 377 ||||||||||||||||||||| Sbjct: 125213 aagattgagaaaaaagaaatc 125233
>gb|AC006511.5| Homo sapiens 12 BAC RPCI11-69M1 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 186321 Score = 42.1 bits (21), Expect = 5.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 574 gagagaattctgccagcagag 594 ||||||||||||||||||||| Sbjct: 179165 gagagaattctgccagcagag 179145
>dbj|AP000827.6| Homo sapiens genomic DNA, chromosome 11 clone:RP11-716D19, complete sequence Length = 168579 Score = 42.1 bits (21), Expect = 5.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 1159 agtctttggttggaaatgcactgaacaaa 1187 ||||||| |||||||||||| |||||||| Sbjct: 109202 agtcttttgttggaaatgcagtgaacaaa 109230
>dbj|AP003068.3| Homo sapiens genomic DNA, chromosome 11 clone:RP11-399J13, complete sequence Length = 187934 Score = 42.1 bits (21), Expect = 5.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 574 gagagaattctgccagcagag 594 ||||||||||||||||||||| Sbjct: 121814 gagagaattctgccagcagag 121834
>dbj|AP000648.5| Homo sapiens genomic DNA, chromosome 11 clone:CMB9-76D16, complete sequence Length = 149744 Score = 42.1 bits (21), Expect = 5.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 1159 agtctttggttggaaatgcactgaacaaa 1187 ||||||| |||||||||||| |||||||| Sbjct: 46740 agtcttttgttggaaatgcagtgaacaaa 46768
>dbj|AP001873.3| Homo sapiens genomic DNA, chromosome 11q clone:CTD-2011H1, complete sequence Length = 44621 Score = 42.1 bits (21), Expect = 5.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 574 gagagaattctgccagcagag 594 ||||||||||||||||||||| Sbjct: 16570 gagagaattctgccagcagag 16590
>gb|AC158504.10| Medicago truncatula clone mth2-151m4, complete sequence Length = 117136 Score = 42.1 bits (21), Expect = 5.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 360 attgagaaaaaagaaatcaat 380 ||||||||||||||||||||| Sbjct: 96780 attgagaaaaaagaaatcaat 96800
>ref|XM_842773.1| Leishmania major strain Friedlin hypothetical protein (LMJ_0844) partial mRNA Length = 2097 Score = 42.1 bits (21), Expect = 5.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 104 tgaacaaggttcttgcgtttg 124 ||||||||||||||||||||| Sbjct: 92 tgaacaaggttcttgcgtttg 72
>emb|AL844161.18| Mouse DNA sequence from clone RP23-343K11 on chromosome 4, complete sequence Length = 224031 Score = 42.1 bits (21), Expect = 5.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 867 atgaagataggagatgcactgtttg 891 ||||||| ||||||||||||||||| Sbjct: 103990 atgaagagaggagatgcactgtttg 103966
>gb|AC145021.14| Medicago truncatula clone mth2-23a16, complete sequence Length = 119096 Score = 42.1 bits (21), Expect = 5.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 685 ctcttcctttaccaaagcaaa 705 ||||||||||||||||||||| Sbjct: 118936 ctcttcctttaccaaagcaaa 118956
>gb|U39251.1|HIV1U39251 Human immunodeficiency virus type 1 isolate BU/91/08, envelope glycoprotein (env) gene, complete cds Length = 2592 Score = 42.1 bits (21), Expect = 5.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 678 cctgtgtctcttcctttacca 698 ||||||||||||||||||||| Sbjct: 2286 cctgtgtctcttcctttacca 2306
>gb|U39250.1|HIV1U39250 Human immunodeficiency virus type 1 isolate BU/91/08, envelope glycoprotein (env) gene, complete cds Length = 2592 Score = 42.1 bits (21), Expect = 5.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 678 cctgtgtctcttcctttacca 698 ||||||||||||||||||||| Sbjct: 2286 cctgtgtctcttcctttacca 2306 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 244,000,286 Number of extensions: 12871947 Number of successful extensions: 241783 Number of sequences better than 10.0: 32 Number of HSP's gapped: 241778 Number of HSP's successfully gapped: 60 Length of query: 1343 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 1320 Effective length of database: 18,503,978,556 Effective search space: 24425251693920 Effective search space used: 24425251693920 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)
