ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf32m23 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_001054306.1| Oryza sativa (japonica cultivar-group) Os02g0686500 (Os02g0686500) mRNA, complete cds Length = 1267 Score = 174 bits (88), Expect = 4e-40 Identities = 201/239 (84%), Gaps = 6/239 (2%) Strand = Plus / Plus Query: 214 atggacgggctgcccggggagctctgcttcaagatcttccacctcctcgatcaccaggcc 273 ||||| || ||||| | |||||| ||| ||||||||||||||||||| |||||||| | Sbjct: 218 atggatggtctgcctgcggagctgtgcatcaagatcttccacctcctggatcaccaatct 277 Query: 274 ctcgccgccgctccccaagtctgcaggaagtggagcgcgttgtcctgcgacgacgagctg 333 |||||| | ||||||||||| ||||||||||||| | ||||| ||| ||||||||||||| Sbjct: 278 ctcgcctctgctccccaagtgtgcaggaagtggaacacgttgacctccgacgacgagctg 337 Query: 334 tggcgcaagctgttcgaggacaggtggggagccgacgccacggccttctacgcgccggag 393 ||||||| ||||||| |||||||||||||||| || || | || |||||||| | Sbjct: 338 tggcgcaggctgttcaaggacaggtggggagcggatgctgcagcgttctacgc------g 391 Query: 394 ccggagggctccaagccctggaaggacgtcttcgtcgtgcaggaccgatgcgaccgata 452 || |||||||||| | | ||||||||||||||| | |||||||| |||||||||||||| Sbjct: 392 ccagagggctccaggtcatggaaggacgtcttcattgtgcaggatcgatgcgaccgata 450 Score = 56.0 bits (28), Expect = 2e-04 Identities = 58/68 (85%) Strand = Plus / Plus Query: 463 gtcaggatcatcagggaaggaaacgactactacctcatctaccaaggcgagatccagagc 522 |||||||| ||||| ||||||| ||| |||||||| || ||||| || ||||||||||| Sbjct: 654 gtcaggattatcagagaaggaagcgattactacctgatttaccagggtgagatccagagg 713 Query: 523 tacctggg 530 ||| |||| Sbjct: 714 tacttggg 721 Score = 50.1 bits (25), Expect = 0.015 Identities = 43/49 (87%) Strand = Plus / Plus Query: 584 ggcagatatctgaccggatcctcttcttcctgggagacctggagactgc 632 |||||||||| || |||||| | |||||||| |||||||||||| |||| Sbjct: 787 ggcagatatccgatcggatcttgttcttccttggagacctggaggctgc 835
>dbj|AK073456.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033042O07, full insert sequence Length = 1268 Score = 174 bits (88), Expect = 4e-40 Identities = 201/239 (84%), Gaps = 6/239 (2%) Strand = Plus / Plus Query: 214 atggacgggctgcccggggagctctgcttcaagatcttccacctcctcgatcaccaggcc 273 ||||| || ||||| | |||||| ||| ||||||||||||||||||| |||||||| | Sbjct: 219 atggatggtctgcctgcggagctgtgcatcaagatcttccacctcctggatcaccaatct 278 Query: 274 ctcgccgccgctccccaagtctgcaggaagtggagcgcgttgtcctgcgacgacgagctg 333 |||||| | ||||||||||| ||||||||||||| | ||||| ||| ||||||||||||| Sbjct: 279 ctcgcctctgctccccaagtgtgcaggaagtggaacacgttgacctccgacgacgagctg 338 Query: 334 tggcgcaagctgttcgaggacaggtggggagccgacgccacggccttctacgcgccggag 393 ||||||| ||||||| |||||||||||||||| || || | || |||||||| | Sbjct: 339 tggcgcaggctgttcaaggacaggtggggagcggatgctgcagcgttctacgc------g 392 Query: 394 ccggagggctccaagccctggaaggacgtcttcgtcgtgcaggaccgatgcgaccgata 452 || |||||||||| | | ||||||||||||||| | |||||||| |||||||||||||| Sbjct: 393 ccagagggctccaggtcatggaaggacgtcttcattgtgcaggatcgatgcgaccgata 451 Score = 56.0 bits (28), Expect = 2e-04 Identities = 58/68 (85%) Strand = Plus / Plus Query: 463 gtcaggatcatcagggaaggaaacgactactacctcatctaccaaggcgagatccagagc 522 |||||||| ||||| ||||||| ||| |||||||| || ||||| || ||||||||||| Sbjct: 655 gtcaggattatcagagaaggaagcgattactacctgatttaccagggtgagatccagagg 714 Query: 523 tacctggg 530 ||| |||| Sbjct: 715 tacttggg 722 Score = 50.1 bits (25), Expect = 0.015 Identities = 43/49 (87%) Strand = Plus / Plus Query: 584 ggcagatatctgaccggatcctcttcttcctgggagacctggagactgc 632 |||||||||| || |||||| | |||||||| |||||||||||| |||| Sbjct: 788 ggcagatatccgatcggatcttgttcttccttggagacctggaggctgc 836
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2 Length = 35954743 Score = 117 bits (59), Expect = 8e-23 Identities = 133/158 (84%), Gaps = 6/158 (3%) Strand = Plus / Plus Query: 295 tgcaggaagtggagcgcgttgtcctgcgacgacgagctgtggcgcaagctgttcgaggac 354 ||||||||||||| | ||||| ||| |||||||||||||||||||| ||||||| ||||| Sbjct: 28141343 tgcaggaagtggaacacgttgacctccgacgacgagctgtggcgcaggctgttcaaggac 28141402 Query: 355 aggtggggagccgacgccacggccttctacgcgccggagccggagggctccaagccctgg 414 ||||||||||| || || | || |||||||| ||| |||||||||| | | ||| Sbjct: 28141403 aggtggggagcggatgctgcagcgttctacgc------gccagagggctccaggtcatgg 28141456 Query: 415 aaggacgtcttcgtcgtgcaggaccgatgcgaccgata 452 |||||||||||| | |||||||| |||||||||||||| Sbjct: 28141457 aaggacgtcttcattgtgcaggatcgatgcgaccgata 28141494 Score = 61.9 bits (31), Expect = 4e-06 Identities = 67/79 (84%) Strand = Plus / Plus Query: 214 atggacgggctgcccggggagctctgcttcaagatcttccacctcctcgatcaccaggcc 273 ||||| || ||||| | |||||| ||| ||||||||||||||||||| |||||||| | Sbjct: 28141075 atggatggtctgcctgcggagctgtgcatcaagatcttccacctcctggatcaccaatct 28141134 Query: 274 ctcgccgccgctccccaag 292 |||||| | |||||||||| Sbjct: 28141135 ctcgcctctgctccccaag 28141153 Score = 56.0 bits (28), Expect = 2e-04 Identities = 58/68 (85%) Strand = Plus / Plus Query: 463 gtcaggatcatcagggaaggaaacgactactacctcatctaccaaggcgagatccagagc 522 |||||||| ||||| ||||||| ||| |||||||| || ||||| || ||||||||||| Sbjct: 28141698 gtcaggattatcagagaaggaagcgattactacctgatttaccagggtgagatccagagg 28141757 Query: 523 tacctggg 530 ||| |||| Sbjct: 28141758 tacttggg 28141765 Score = 50.1 bits (25), Expect = 0.015 Identities = 43/49 (87%) Strand = Plus / Plus Query: 584 ggcagatatctgaccggatcctcttcttcctgggagacctggagactgc 632 |||||||||| || |||||| | |||||||| |||||||||||| |||| Sbjct: 28141831 ggcagatatccgatcggatcttgttcttccttggagacctggaggctgc 28141879
>dbj|AP004071.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1717_A09 Length = 203132 Score = 117 bits (59), Expect = 8e-23 Identities = 133/158 (84%), Gaps = 6/158 (3%) Strand = Plus / Plus Query: 295 tgcaggaagtggagcgcgttgtcctgcgacgacgagctgtggcgcaagctgttcgaggac 354 ||||||||||||| | ||||| ||| |||||||||||||||||||| ||||||| ||||| Sbjct: 130990 tgcaggaagtggaacacgttgacctccgacgacgagctgtggcgcaggctgttcaaggac 131049 Query: 355 aggtggggagccgacgccacggccttctacgcgccggagccggagggctccaagccctgg 414 ||||||||||| || || | || |||||||| ||| |||||||||| | | ||| Sbjct: 131050 aggtggggagcggatgctgcagcgttctacgc------gccagagggctccaggtcatgg 131103 Query: 415 aaggacgtcttcgtcgtgcaggaccgatgcgaccgata 452 |||||||||||| | |||||||| |||||||||||||| Sbjct: 131104 aaggacgtcttcattgtgcaggatcgatgcgaccgata 131141 Score = 61.9 bits (31), Expect = 4e-06 Identities = 67/79 (84%) Strand = Plus / Plus Query: 214 atggacgggctgcccggggagctctgcttcaagatcttccacctcctcgatcaccaggcc 273 ||||| || ||||| | |||||| ||| ||||||||||||||||||| |||||||| | Sbjct: 130722 atggatggtctgcctgcggagctgtgcatcaagatcttccacctcctggatcaccaatct 130781 Query: 274 ctcgccgccgctccccaag 292 |||||| | |||||||||| Sbjct: 130782 ctcgcctctgctccccaag 130800 Score = 56.0 bits (28), Expect = 2e-04 Identities = 58/68 (85%) Strand = Plus / Plus Query: 463 gtcaggatcatcagggaaggaaacgactactacctcatctaccaaggcgagatccagagc 522 |||||||| ||||| ||||||| ||| |||||||| || ||||| || ||||||||||| Sbjct: 131345 gtcaggattatcagagaaggaagcgattactacctgatttaccagggtgagatccagagg 131404 Query: 523 tacctggg 530 ||| |||| Sbjct: 131405 tacttggg 131412 Score = 50.1 bits (25), Expect = 0.015 Identities = 43/49 (87%) Strand = Plus / Plus Query: 584 ggcagatatctgaccggatcctcttcttcctgggagacctggagactgc 632 |||||||||| || |||||| | |||||||| |||||||||||| |||| Sbjct: 131478 ggcagatatccgatcggatcttgttcttccttggagacctggaggctgc 131526
>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome Length = 2909809 Score = 46.1 bits (23), Expect = 0.23 Identities = 23/23 (100%) Strand = Plus / Plus Query: 416 aggacgtcttcgtcgtgcaggac 438 ||||||||||||||||||||||| Sbjct: 485795 aggacgtcttcgtcgtgcaggac 485817
>gb|CP000473.1| Solibacter usitatus Ellin6076, complete genome Length = 9965640 Score = 44.1 bits (22), Expect = 0.90 Identities = 22/22 (100%) Strand = Plus / Plus Query: 82 gtccctctccctcgagctctcg 103 |||||||||||||||||||||| Sbjct: 9655022 gtccctctccctcgagctctcg 9655043
>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome Length = 3566135 Score = 44.1 bits (22), Expect = 0.90 Identities = 22/22 (100%) Strand = Plus / Minus Query: 127 ggcgccgggctcgcggcgggcc 148 |||||||||||||||||||||| Sbjct: 783817 ggcgccgggctcgcggcgggcc 783796
>emb|CT954236.4| M.truncatula DNA sequence from clone MTH2-3H12 on chromosome 3, complete sequence Length = 121322 Score = 42.1 bits (21), Expect = 3.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 73 gccatcgtcgtccctctccct 93 ||||||||||||||||||||| Sbjct: 58724 gccatcgtcgtccctctccct 58704
>gb|AC157538.19| Medicago truncatula clone mth2-150a17, complete sequence Length = 102530 Score = 42.1 bits (21), Expect = 3.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 73 gccatcgtcgtccctctccct 93 ||||||||||||||||||||| Sbjct: 97190 gccatcgtcgtccctctccct 97210
>gb|AC131239.20| Medicago truncatula clone mth2-18o15, complete sequence Length = 140751 Score = 42.1 bits (21), Expect = 3.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 73 gccatcgtcgtccctctccct 93 ||||||||||||||||||||| Sbjct: 104062 gccatcgtcgtccctctccct 104082
>gb|AC011495.8| Homo sapiens chromosome 19 clone CTB-33G10, complete sequence Length = 209844 Score = 42.1 bits (21), Expect = 3.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 603 cctcttcttcctgggagacct 623 ||||||||||||||||||||| Sbjct: 92170 cctcttcttcctgggagacct 92190
>gb|AC008411.5| Homo sapiens chromosome 5 clone CTC-281B15, complete sequence Length = 108098 Score = 42.1 bits (21), Expect = 3.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 876 cttcttgcagttcccaaactgcaga 900 |||||| |||||||||||||||||| Sbjct: 74586 cttcttacagttcccaaactgcaga 74562
>gb|AC151895.4| Mus musculus BAC clone RP24-323A22 from chromosome 10, complete sequence Length = 224442 Score = 42.1 bits (21), Expect = 3.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 705 aatccttgtccctgttttgca 725 ||||||||||||||||||||| Sbjct: 23900 aatccttgtccctgttttgca 23920
>gb|AF321923.2|AF321923 Drosophila simulans centromeric histone H3-like protein Cid gene, complete cds Length = 678 Score = 42.1 bits (21), Expect = 3.6 Identities = 30/33 (90%) Strand = Plus / Plus Query: 366 cgacgccacggccttctacgcgccggagccgga 398 ||||| |||||||||| || ||||||||||||| Sbjct: 69 cgacgacacggccttccactcgccggagccgga 101
>gb|AF289220.1|AF289220 Homo sapiens Bcl-2 related proline-rich protein (BCL2L12) gene, complete cds, alternatively spliced Length = 9700 Score = 42.1 bits (21), Expect = 3.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 603 cctcttcttcctgggagacct 623 ||||||||||||||||||||| Sbjct: 1474 cctcttcttcctgggagacct 1494
>gb|AC123530.4| Mus musculus BAC clone RP24-194D2 from chromosome 10, complete sequence Length = 164420 Score = 42.1 bits (21), Expect = 3.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 705 aatccttgtccctgttttgca 725 ||||||||||||||||||||| Sbjct: 101419 aatccttgtccctgttttgca 101439
>gb|AY104158.1| Zea mays PCO135695 mRNA sequence Length = 932 Score = 42.1 bits (21), Expect = 3.6 Identities = 30/33 (90%) Strand = Plus / Minus Query: 365 ccgacgccacggccttctacgcgccggagccgg 397 ||||||||||||||| | ||||||||| ||||| Sbjct: 69 ccgacgccacggcctgcgacgcgccggcgccgg 37
>gb|AF112181.1|AF112181 Homo sapiens interferon regulatory factor 3 (IRF3) gene, promoter region and partial cds Length = 1755 Score = 42.1 bits (21), Expect = 3.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 603 cctcttcttcctgggagacct 623 ||||||||||||||||||||| Sbjct: 143 cctcttcttcctgggagacct 123 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 127,107,060 Number of extensions: 6766998 Number of successful extensions: 131471 Number of sequences better than 10.0: 18 Number of HSP's gapped: 131467 Number of HSP's successfully gapped: 32 Length of query: 945 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 922 Effective length of database: 18,503,978,556 Effective search space: 17060668228632 Effective search space used: 17060668228632 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)
