ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf29j17
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1AK108695:Os01g0736000 33 0.40
2Os02g0552600:Os02g0552600 31 2.6
3AK111750:Os02g0319800 30 4.4
4Os10g0445700:Os10g0445700 30 5.8
5AK119496:Os02g0456000 30 5.8
6AK107033:Os01g0632700 30 5.8
7AK068985:Os06g0656500 30 5.8
8AK067261:Os06g0656500 30 5.8
9Os08g0330900:Os08g0330900 30 5.8

>AK108695:Os01g0736000 |
          Length = 187
 Score = 33.5 bits (75), Expect = 0.40
 Identities = 25/66 (37%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
 Frame = -3

Query: 695 PPCWTPIYAGRGP-CYKHTCTPTRPAKATPR--SCCRGSLPRLSHSEANLALARLPRGEG 525
           P   TP    RGP     +  P RPA+A PR  S C    PR S S A  A +   R  G
Sbjct: 8   PGAATPAPPRRGPQAVSSSPRPPRPARARPRGTSACSSPAPRRSPSAAPPAPSSRSRSRG 67

Query: 524 APLRSA 507
            P  +A
Sbjct: 68  RPRSAA 73



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>Os02g0552600:Os02g0552600 |
          Length = 856

 Score = 30.8 bits (68), Expect = 2.6
 Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 6/44 (13%)
 Frame = +3

Query: 111 SASSVNPPFRRLRHRPPCP------GARGGSPRPIPGVRTPRSD 224
           +A++  PP RR R RPP P       +   +P P P V TP+S+
Sbjct: 453 AAAAGMPPRRRRRVRPPLPPSPPLLSSTTATPPPTPPVGTPKSE 496



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>AK111750:Os02g0319800 |
          Length = 451

 Score = 30.0 bits (66), Expect = 4.4
 Identities = 17/39 (43%), Positives = 20/39 (51%)
 Frame = +3

Query: 114 ASSVNPPFRRLRHRPPCPGARGGSPRPIPGVRTPRSDPP 230
           AS+  PP +R R  PP P      P PIP    PR+ PP
Sbjct: 33  ASAAGPPPKRPRWEPP-PYLPPPPPYPIPQPARPRAAPP 70



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>Os10g0445700:Os10g0445700 |
          Length = 554

 Score = 29.6 bits (65), Expect = 5.8
 Identities = 17/49 (34%), Positives = 20/49 (40%)
 Frame = -3

Query: 1370 GALTTTSSPYLPHQLHLQAPCTNAYLPTHQQHELQDHIPLPYIHALSHP 1224
            G L       LP  LH Q P     LP H    + DH+P P +    HP
Sbjct: 54   GGLADALRRQLPPLLHHQPP-----LPLHHVDAVLDHLPPPAVRHHQHP 97



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>AK119496:Os02g0456000 |
          Length = 229

 Score = 29.6 bits (65), Expect = 5.8
 Identities = 17/34 (50%), Positives = 18/34 (52%)
 Frame = +3

Query: 129 PPFRRLRHRPPCPGARGGSPRPIPGVRTPRSDPP 230
           PP R  R  PP P  R G+P P P  R PR  PP
Sbjct: 109 PPRRSSRSPPPTP-PRSGTPPP-PPPRWPRRSPP 140



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>AK107033:Os01g0632700 |
          Length = 186

 Score = 29.6 bits (65), Expect = 5.8
 Identities = 18/40 (45%), Positives = 20/40 (50%)
 Frame = +3

Query: 111 SASSVNPPFRRLRHRPPCPGARGGSPRPIPGVRTPRSDPP 230
           SAS   PP  R R RPP   A+   P P P  R P  +PP
Sbjct: 19  SASVAPPPSGRYRIRPPPVAAQSPLPPPPPSRRRP--NPP 56



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>AK068985:Os06g0656500 |
          Length = 559

 Score = 29.6 bits (65), Expect = 5.8
 Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = -3

Query: 1379 SKWGALTTTSSP-YLPHQLHLQAPCTNA 1299
            ++ GA TTT++P Y PH++H QA    A
Sbjct: 105  ARLGAATTTANPFYTPHEIHRQASAAGA 132



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>AK067261:Os06g0656500 |
          Length = 445

 Score = 29.6 bits (65), Expect = 5.8
 Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = -3

Query: 1379 SKWGALTTTSSP-YLPHQLHLQAPCTNA 1299
            ++ GA TTT++P Y PH++H QA    A
Sbjct: 105  ARLGAATTTANPFYTPHEIHRQASAAGA 132



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>Os08g0330900:Os08g0330900 |
          Length = 733

 Score = 29.6 bits (65), Expect = 5.8
 Identities = 20/70 (28%), Positives = 28/70 (40%)
 Frame = -1

Query: 823 RPLSDYWERQRQRLTGHSRRCCYAALPAMNSCTRR*EPTRGRARPAGHPSTRGGAPATNT 644
           RPL+D+W   R R    S++      P+           + R    G P   GG  A+ T
Sbjct: 595 RPLADWWITTRWRFQNTSKKVKKEVHPSSQYIHEHNALNKARQ---GFPVELGGVDASKT 651

Query: 643 PALQLARQKP 614
             L+LA   P
Sbjct: 652 KILRLAHSTP 661


  Database: orf_amino.fa.out
    Posted date:  Jul 26, 2007 11:37 AM
  Number of letters in database: 15,399,855
  Number of sequences in database:  40,041
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 40041
Number of Hits to DB: 40,433,857
Number of extensions: 987259
Number of successful extensions: 4395
Number of sequences better than 10.0: 9
Number of HSP's gapped: 4370
Number of HSP's successfully gapped: 9
Length of query: 496
Length of database: 15,399,855
Length adjustment: 105
Effective length of query: 391
Effective length of database: 11,195,550
Effective search space: 4377460050
Effective search space used: 4377460050
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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