>P52591:PO121_RAT Nuclear envelope pore membrane protein POM 121 - Rattus norvegicus|
           (Rat)
          Length = 1199
 Score = 35.4 bits (80), Expect = 0.63
 Identities = 30/87 (34%), Positives = 38/87 (43%), Gaps = 12/87 (13%)
 Frame = -2

Query: 717 ENRRGEEPALLDTHLRGEGPLLQTHLHSNSP-GKSHAAQLL--------PG*PTAALPQR 565
           E+RR   PAL  + L  + P+  +     SP G    A+LL        PG P  ALPQ 
Sbjct: 87  ESRRHPRPALTASPLPAKSPVNGSLCEPRSPLGGPDPAELLLMGSYLGKPGPPEPALPQD 146

Query: 564 GQPSPGAATTRGGSPS---AQRTHALY 493
            +  PG        PS   AQR H +Y
Sbjct: 147 PRDRPGRRPPSRSPPSSSTAQRVHHVY 173

>O88737:BSN_MOUSE Protein bassoon - Mus musculus (Mouse)|
          Length = 3942

 Score = 30.8 bits (68), Expect(2) = 1.4
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -1

Query: 712  PTRGRARPAGHPSTRGGAPATNTPA 638
            P++ R +P   P+TRG APA + PA
Sbjct: 3809 PSQARLQPQSQPTTRGTAPAASQPA 3833



 Score = 21.9 bits (45), Expect(2) = 1.4
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -2

Query: 588  PTAALPQRGQPSPGAATTRGGSPS 517
            P A+ P  G+P PG  T  G  P+
Sbjct: 3827 PAASQPA-GKPQPGPTTAPGPQPA 3849

>Q5R5Q2:SRRM1_PONPY Serine/arginine repetitive matrix protein 1 - Pongo pygmaeus|
           (Orangutan)
          Length = 917

 Score = 33.9 bits (76), Expect = 1.8
 Identities = 22/46 (47%), Positives = 23/46 (50%)
 Frame = +2

Query: 656 RGPSPRRWVSSRAGSSPRRFSAPCA*VHRRQRSVATSARMSRQSLS 793
           R PSPRR  S R  + PRR   P    HRR RS     R S  SLS
Sbjct: 313 RRPSPRRRPSPRRRTPPRRMPPPPR--HRRSRSPVRRRRRSSASLS 356

>Q52KI8:SRRM1_MOUSE Serine/arginine repetitive matrix protein 1 - Mus musculus (Mouse)|
          Length = 946

 Score = 33.9 bits (76), Expect = 1.8
 Identities = 22/46 (47%), Positives = 23/46 (50%)
 Frame = +2

Query: 656 RGPSPRRWVSSRAGSSPRRFSAPCA*VHRRQRSVATSARMSRQSLS 793
           R PSPRR  S R  + PRR   P    HRR RS     R S  SLS
Sbjct: 311 RRPSPRRRPSPRRRTPPRRMPPPPR--HRRSRSPGRRRRRSSASLS 354

>Q8IYB3:SRRM1_HUMAN Serine/arginine repetitive matrix protein 1 - Homo sapiens (Human)|
          Length = 904

 Score = 33.9 bits (76), Expect = 1.8
 Identities = 22/46 (47%), Positives = 23/46 (50%)
 Frame = +2

Query: 656 RGPSPRRWVSSRAGSSPRRFSAPCA*VHRRQRSVATSARMSRQSLS 793
           R PSPRR  S R  + PRR   P    HRR RS     R S  SLS
Sbjct: 313 RRPSPRRRPSPRRRTPPRRMPPPPR--HRRSRSPVRRRRRSSASLS 356

>Q5ZMJ9:SRRM1_CHICK Serine/arginine repetitive matrix protein 1 - Gallus gallus|
           (Chicken)
          Length = 888

 Score = 33.9 bits (76), Expect = 1.8
 Identities = 22/46 (47%), Positives = 23/46 (50%)
 Frame = +2

Query: 656 RGPSPRRWVSSRAGSSPRRFSAPCA*VHRRQRSVATSARMSRQSLS 793
           R PSPRR  S R  + PRR   P    HRR RS     R S  SLS
Sbjct: 309 RRPSPRRRPSPRRRTPPRRMPPPPR--HRRSRSPVRRRRRSSASLS 352

>O08664:BCL7C_MOUSE B-cell CLL/lymphoma 7 protein family member C - Mus musculus|
           (Mouse)
          Length = 217

 Score = 33.1 bits (74), Expect = 3.1
 Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
 Frame = -2

Query: 723 GAENRRGEEPALLDTHLRGEGPLLQTHLHSNSPGKSHAAQLLPG*PTAALPQRGQPSPGA 544
           GAE  RG E     T  RG GPL+   L+  +  +S  ++        +L +  +PSPG 
Sbjct: 65  GAERSRGRERRGRGTSPRGGGPLILLDLNDENSNQSFHSE-------GSLQKGAEPSPGG 117

Query: 543 A--TTRGGSPS 517
               +R GSP+
Sbjct: 118 TPQPSRPGSPT 128

>Q9UPA5:BSN_HUMAN Protein bassoon - Homo sapiens (Human)|
          Length = 3926

 Score = 27.3 bits (59), Expect(2) = 3.9
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -1

Query: 709  TRGRARPAGHPSTRGGAPATNTPA 638
            T+ R +    P+TRG APA + PA
Sbjct: 3795 TQARLQQQSQPTTRGSAPAASQPA 3818



 Score = 23.9 bits (50), Expect(2) = 3.9
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 4/33 (12%)
 Frame = -2

Query: 588  PTAALPQRGQPSPGAATTRG----GSPSAQRTH 502
            P A+ P  G+P PG +T  G    G P A++T+
Sbjct: 3812 PAASQPA-GKPQPGPSTATGPQPAGPPRAEQTN 3843

>Q6D0E6:RAPA_ERWCT RNA polymerase-associated protein rapA - Erwinia carotovora subsp.|
            atroseptica (Pectobacterium atrosepticum)
          Length = 967

 Score = 32.3 bits (72), Expect = 5.3
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = -3

Query: 1412 QGREEQNKKNISKWGALTTTSSPYLPHQLHL 1320
            + R+ QN++ + +WG L    +  +PHQLH+
Sbjct: 130  RARKHQNEQALQQWGGLRGMRASLIPHQLHI 160

>P65131:IF2_MYCTU Translation initiation factor IF-2 - Mycobacterium tuberculosis|
          Length = 900

 Score = 31.6 bits (70), Expect = 9.0
 Identities = 16/30 (53%), Positives = 18/30 (60%)
 Frame = +3

Query: 129 PPFRRLRHRPPCPGARGGSPRPIPGVRTPR 218
           PP  +  H    PGAR G P P PG+RTPR
Sbjct: 123 PPSPQAPHPGMAPGARPG-PVPKPGIRTPR 151

>P65132:IF2_MYCBO Translation initiation factor IF-2 - Mycobacterium bovis|
          Length = 900

 Score = 31.6 bits (70), Expect = 9.0
 Identities = 16/30 (53%), Positives = 18/30 (60%)
 Frame = +3

Query: 129 PPFRRLRHRPPCPGARGGSPRPIPGVRTPR 218
           PP  +  H    PGAR G P P PG+RTPR
Sbjct: 123 PPSPQAPHPGMAPGARPG-PVPKPGIRTPR 151


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 230,177,221
Number of extensions: 5041049
Number of successful extensions: 17191
Number of sequences better than 10.0: 11
Number of HSP's gapped: 17123
Number of HSP's successfully gapped: 13
Length of query: 496
Length of database: 100,686,439
Length adjustment: 117
Effective length of query: 379
Effective length of database: 68,593,924
Effective search space: 25997097196
Effective search space used: 25997097196
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)