ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf29j17 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY661558.1| Hordeum vulgare subsp. vulgare eIF4E gene locus, complete sequence Length = 439641 Score = 363 bits (183), Expect = 1e-96 Identities = 247/268 (92%), Gaps = 2/268 (0%) Strand = Plus / Plus Query: 108 tgcagcgcctcctccgtcaacccgccgttccgtcgtctccggcaccggccgccatgtccg 167 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct: 59787 tgcagcgcctcctccgtcaacccgtcgttccgtcgtctccggcaccggccgccatgtccg 59846 Query: 168 ggggctcggggcggctccccgcgtcccattcccggcgttaggaccccgaggagcga-nnn 226 ||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 59847 gggcctcggggcggctctccgcgtcccattcccggcgttaggaccccgaggagcgaccct 59906 Query: 227 nnnngtcgagctcatcctcgtcaacggggcgaaccgggcgaactccttccctgcttcggt 286 ||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 59907 ccccgtcgagctcgtcctcgtcaacggggcgaaccgggcggactccttccctgcttcggt 59966 Query: 287 ctacgtcggaggagcttcttcggcgtcttcttcctcggtccggtgctcctcctccccgtt 346 ||||| ||||||| |||||||||||||||||||| |||||||| ||||||||||||| || Sbjct: 59967 ctacggcggaggaacttcttcggcgtcttcttccccggtccggcgctcctcctccccatt 60026 Query: 347 cggcgccccatcttcccccaaggtgagg 374 ||||| |||||||| | ||||||||||| Sbjct: 60027 cggcgacccatctt-cgccaaggtgagg 60053 Score = 363 bits (183), Expect = 1e-96 Identities = 247/268 (92%), Gaps = 2/268 (0%) Strand = Plus / Plus Query: 108 tgcagcgcctcctccgtcaacccgccgttccgtcgtctccggcaccggccgccatgtccg 167 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct: 70591 tgcagcgcctcctccgtcaacccgtcgttccgtcgtctccggcaccggccgccatgtccg 70650 Query: 168 ggggctcggggcggctccccgcgtcccattcccggcgttaggaccccgaggagcga-nnn 226 ||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 70651 gggcctcggggcggctctccgcgtcccattcccggcgttaggaccccgaggagcgaccct 70710 Query: 227 nnnngtcgagctcatcctcgtcaacggggcgaaccgggcgaactccttccctgcttcggt 286 ||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 70711 ccccgtcgagctcgtcctcgtcaacggggcgaaccgggcggactccttccctgcttcggt 70770 Query: 287 ctacgtcggaggagcttcttcggcgtcttcttcctcggtccggtgctcctcctccccgtt 346 ||||| ||||||| |||||||||||||||||||| |||||||| ||||||||||||| || Sbjct: 70771 ctacggcggaggaacttcttcggcgtcttcttccccggtccggcgctcctcctccccatt 70830 Query: 347 cggcgccccatcttcccccaaggtgagg 374 ||||| |||||||| | ||||||||||| Sbjct: 70831 cggcgacccatctt-cgccaaggtgagg 70857 Score = 58.0 bits (29), Expect = 1e-04 Identities = 41/45 (91%) Strand = Plus / Plus Query: 20 cccccagcgccgccagtttcccccttccctcgttcttccctggta 64 ||||||||||||||||||||| | | |||||||||||||||||| Sbjct: 59712 cccccagcgccgccagtttcctcatgtcctcgttcttccctggta 59756 Score = 58.0 bits (29), Expect = 1e-04 Identities = 41/45 (91%) Strand = Plus / Plus Query: 20 cccccagcgccgccagtttcccccttccctcgttcttccctggta 64 ||||||||||||||||||||| | | |||||||||||||||||| Sbjct: 70516 cccccagcgccgccagtttcctcatgtcctcgttcttccctggta 70560 Score = 44.1 bits (22), Expect = 1.4 Identities = 55/66 (83%) Strand = Plus / Minus Query: 150 caccggccgccatgtccgggggctcggggcggctccccgcgtcccattcccggcgttagg 209 ||||||| |||||||||||||||||||| | | ||| || |||||||||||| |||| Sbjct: 152272 caccggcgaccatgtccgggggctcggggaaggtgcccacgatccattcccggcgctagg 152213 Query: 210 accccg 215 | |||| Sbjct: 152212 atcccg 152207
>gb|AC157087.2| Mus musculus BAC clone RP23-287O24 from chromosome 9, complete sequence Length = 226149 Score = 46.1 bits (23), Expect = 0.36 Identities = 26/27 (96%) Strand = Plus / Plus Query: 943 ccttttgttcttttgttttgatttatt 969 |||||||||||||||||||| |||||| Sbjct: 9833 ccttttgttcttttgttttgttttatt 9859
>gb|AE014820.1| Plasmodium falciparum 3D7 chromosome 14 section 5 of 13 of the complete sequence Length = 250029 Score = 46.1 bits (23), Expect = 0.36 Identities = 23/23 (100%) Strand = Plus / Plus Query: 1090 catatattttttccttttatttc 1112 ||||||||||||||||||||||| Sbjct: 127789 catatattttttccttttatttc 127811
>gb|AC027373.11| Homo sapiens chromosome 8, clone RP11-521I2, complete sequence Length = 140783 Score = 46.1 bits (23), Expect = 0.36 Identities = 23/23 (100%) Strand = Plus / Plus Query: 37 ttcccccttccctcgttcttccc 59 ||||||||||||||||||||||| Sbjct: 102334 ttcccccttccctcgttcttccc 102356
>emb|AL939131.1|SCO939131 Streptomyces coelicolor A3(2) complete genome; segment 28/29 Length = 303550 Score = 46.1 bits (23), Expect = 0.36 Identities = 29/31 (93%) Strand = Plus / Minus Query: 138 cgtcgtctccggcaccggccgccatgtccgg 168 ||||||||||||||||| | ||||||||||| Sbjct: 22080 cgtcgtctccggcaccgtcagccatgtccgg 22050
>gb|AC156799.2| Mus musculus BAC clone RP23-341L15 from chromosome 9, complete sequence Length = 214455 Score = 46.1 bits (23), Expect = 0.36 Identities = 26/27 (96%) Strand = Plus / Plus Query: 943 ccttttgttcttttgttttgatttatt 969 |||||||||||||||||||| |||||| Sbjct: 191487 ccttttgttcttttgttttgttttatt 191513
>gb|AC116555.23| Mus musculus strain C57BL/6J clone rp23-160b14 map 8, complete sequence Length = 209784 Score = 46.1 bits (23), Expect = 0.36 Identities = 23/23 (100%) Strand = Plus / Minus Query: 380 ccttcccccttccttcctcctcc 402 ||||||||||||||||||||||| Sbjct: 108770 ccttcccccttccttcctcctcc 108748
>gb|AY722177.1| Oxyeleotris marmorata isolate A cytochrome oxidase subunit I (COXI) gene, partial cds; mitochondrial Length = 1255 Score = 46.1 bits (23), Expect = 0.36 Identities = 23/23 (100%) Strand = Plus / Plus Query: 380 ccttcccccttccttcctcctcc 402 ||||||||||||||||||||||| Sbjct: 301 ccttcccccttccttcctcctcc 323
>gb|AY722176.1| Oxyeleotris marmorata isolate B cytochrome oxidase subunit I (COXI) gene, partial cds; mitochondrial Length = 1255 Score = 46.1 bits (23), Expect = 0.36 Identities = 23/23 (100%) Strand = Plus / Plus Query: 380 ccttcccccttccttcctcctcc 402 ||||||||||||||||||||||| Sbjct: 301 ccttcccccttccttcctcctcc 323
>dbj|AP004195.1| Homo sapiens genomic DNA, chromosome 8q23, clone: KB1434A12 Length = 151834 Score = 46.1 bits (23), Expect = 0.36 Identities = 23/23 (100%) Strand = Plus / Minus Query: 37 ttcccccttccctcgttcttccc 59 ||||||||||||||||||||||| Sbjct: 121748 ttcccccttccctcgttcttccc 121726
>gb|AC079093.16| Homo sapiens chromosome 8, clone RP11-265H5, complete sequence Length = 141612 Score = 46.1 bits (23), Expect = 0.36 Identities = 23/23 (100%) Strand = Plus / Minus Query: 37 ttcccccttccctcgttcttccc 59 ||||||||||||||||||||||| Sbjct: 105668 ttcccccttccctcgttcttccc 105646
>gb|AC158956.6| Mus musculus chromosome 3, clone RP23-370F14, complete sequence Length = 174060 Score = 44.1 bits (22), Expect = 1.4 Identities = 22/22 (100%) Strand = Plus / Plus Query: 1177 gggttgcagatgttcttatata 1198 |||||||||||||||||||||| Sbjct: 35914 gggttgcagatgttcttatata 35935
>gb|CP000316.1| Polaromonas sp. JS666, complete genome Length = 5200264 Score = 44.1 bits (22), Expect = 1.4 Identities = 22/22 (100%) Strand = Plus / Plus Query: 301 cttcttcggcgtcttcttcctc 322 |||||||||||||||||||||| Sbjct: 4088972 cttcttcggcgtcttcttcctc 4088993
>gb|DQ108072.1| Oreosoma atlanticum voucher BW-A365 cytochrome oxidase subunit 1 (COI) gene, partial cds; mitochondrial Length = 655 Score = 44.1 bits (22), Expect = 1.4 Identities = 22/22 (100%) Strand = Plus / Plus Query: 381 cttcccccttccttcctcctcc 402 |||||||||||||||||||||| Sbjct: 263 cttcccccttccttcctcctcc 284
>gb|DQ108071.1| Oreosoma atlanticum voucher BW-A363 cytochrome oxidase subunit 1 (COI) gene, partial cds; mitochondrial Length = 655 Score = 44.1 bits (22), Expect = 1.4 Identities = 22/22 (100%) Strand = Plus / Plus Query: 381 cttcccccttccttcctcctcc 402 |||||||||||||||||||||| Sbjct: 263 cttcccccttccttcctcctcc 284
>gb|DQ108070.1| Oreosoma atlanticum voucher BW-A362 cytochrome oxidase subunit 1 (COI) gene, partial cds; mitochondrial Length = 655 Score = 44.1 bits (22), Expect = 1.4 Identities = 22/22 (100%) Strand = Plus / Plus Query: 381 cttcccccttccttcctcctcc 402 |||||||||||||||||||||| Sbjct: 263 cttcccccttccttcctcctcc 284
>gb|DQ108069.1| Oreosoma atlanticum voucher BW-A361 cytochrome oxidase subunit 1 (COI) gene, partial cds; mitochondrial Length = 655 Score = 44.1 bits (22), Expect = 1.4 Identities = 22/22 (100%) Strand = Plus / Plus Query: 381 cttcccccttccttcctcctcc 402 |||||||||||||||||||||| Sbjct: 263 cttcccccttccttcctcctcc 284
>gb|AC120404.25| Mus musculus chromosome 6, clone RP24-405O23, complete sequence Length = 202146 Score = 44.1 bits (22), Expect = 1.4 Identities = 22/22 (100%) Strand = Plus / Minus Query: 945 ttttgttcttttgttttgattt 966 |||||||||||||||||||||| Sbjct: 15461 ttttgttcttttgttttgattt 15440
>gb|AC108393.10| Mus musculus chromosome 3, clone RP23-388A19, complete sequence Length = 178878 Score = 44.1 bits (22), Expect = 1.4 Identities = 22/22 (100%) Strand = Plus / Plus Query: 1177 gggttgcagatgttcttatata 1198 |||||||||||||||||||||| Sbjct: 172081 gggttgcagatgttcttatata 172102
>gb|AC125133.2| Mus musculus BAC clone RP24-316A22 from chromosome 18, complete sequence Length = 175583 Score = 44.1 bits (22), Expect = 1.4 Identities = 25/26 (96%) Strand = Plus / Plus Query: 944 cttttgttcttttgttttgatttatt 969 ||||||||||||||||||| |||||| Sbjct: 98080 cttttgttcttttgttttgttttatt 98105
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9 Length = 22696651 Score = 44.1 bits (22), Expect = 1.4 Identities = 25/26 (96%) Strand = Plus / Plus Query: 137 ccgtcgtctccggcaccggccgccat 162 |||||||||||||| ||||||||||| Sbjct: 12423607 ccgtcgtctccggctccggccgccat 12423632
>emb|AL356584.21| Human DNA sequence from clone RP11-60C15 on chromosome 9 Contains part of the PTPRD gene for protein tyrosine phosphatase, receptor type, D (HPTP, PTPD, HPTPD), complete sequence Length = 165589 Score = 44.1 bits (22), Expect = 1.4 Identities = 22/22 (100%) Strand = Plus / Plus Query: 948 tgttcttttgttttgatttatt 969 |||||||||||||||||||||| Sbjct: 18835 tgttcttttgttttgatttatt 18856
>emb|AL596168.1| Listeria innocua Clip11262 complete genome, segment 6/12 Length = 333050 Score = 44.1 bits (22), Expect = 1.4 Identities = 22/22 (100%) Strand = Plus / Minus Query: 946 tttgttcttttgttttgattta 967 |||||||||||||||||||||| Sbjct: 18222 tttgttcttttgttttgattta 18201
>gb|AC012499.8| Homo sapiens BAC clone RP11-428I14 from 2, complete sequence Length = 183436 Score = 44.1 bits (22), Expect = 1.4 Identities = 22/22 (100%) Strand = Plus / Minus Query: 945 ttttgttcttttgttttgattt 966 |||||||||||||||||||||| Sbjct: 161017 ttttgttcttttgttttgattt 160996
>dbj|AP005867.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0599F09 Length = 157415 Score = 44.1 bits (22), Expect = 1.4 Identities = 25/26 (96%) Strand = Plus / Plus Query: 137 ccgtcgtctccggcaccggccgccat 162 |||||||||||||| ||||||||||| Sbjct: 89191 ccgtcgtctccggctccggccgccat 89216
>gb|AC174597.2| Mus musculus BAC clone RP24-418F6 from chromosome 6, complete sequence Length = 188358 Score = 44.1 bits (22), Expect = 1.4 Identities = 22/22 (100%) Strand = Plus / Minus Query: 945 ttttgttcttttgttttgattt 966 |||||||||||||||||||||| Sbjct: 111063 ttttgttcttttgttttgattt 111042
>gb|AC090503.12| Homo sapiens 12q BAC RP11-314D7 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 221074 Score = 44.1 bits (22), Expect = 1.4 Identities = 22/22 (100%) Strand = Plus / Minus Query: 1096 ttttttccttttatttcttgct 1117 |||||||||||||||||||||| Sbjct: 110585 ttttttccttttatttcttgct 110564
>gb|CP000480.1| Mycobacterium smegmatis str. MC2 155, complete genome Length = 6988209 Score = 42.1 bits (21), Expect = 5.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 594 ccggcagcagctgcgcggcgt 614 ||||||||||||||||||||| Sbjct: 6395901 ccggcagcagctgcgcggcgt 6395881
>gb|CP000478.1| Syntrophobacter fumaroxidans MPOB, complete genome Length = 4990251 Score = 42.1 bits (21), Expect = 5.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 136 tccgtcgtctccggcaccggc 156 ||||||||||||||||||||| Sbjct: 2084362 tccgtcgtctccggcaccggc 2084382
>ref|XM_001229537.1| Chaetomium globosum CBS 148.51 hypothetical protein (CHGG_03022) mRNA, complete cds Length = 2751 Score = 42.1 bits (21), Expect = 5.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 306 tcggcgtcttcttcctcggtc 326 ||||||||||||||||||||| Sbjct: 1274 tcggcgtcttcttcctcggtc 1254
>gb|AY666563.1| Bonasa umbellus voucher HC005 cytochrome oxidase subunit 1 (COI) gene, partial cds; mitochondrial Length = 682 Score = 42.1 bits (21), Expect = 5.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 381 cttcccccttccttcctcctc 401 ||||||||||||||||||||| Sbjct: 261 cttcccccttccttcctcctc 281
>gb|AY666214.1| Bonasa umbellus voucher 1B-247 cytochrome oxidase subunit 1 (COI) gene, partial cds; mitochondrial Length = 696 Score = 42.1 bits (21), Expect = 5.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 381 cttcccccttccttcctcctc 401 ||||||||||||||||||||| Sbjct: 265 cttcccccttccttcctcctc 285
>gb|BC106328.1| Xenopus laevis cDNA clone IMAGE:7203800 Length = 1650 Score = 42.1 bits (21), Expect = 5.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1187 tgttcttatataacttttctt 1207 ||||||||||||||||||||| Sbjct: 1382 tgttcttatataacttttctt 1402
>gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete genome Length = 2584158 Score = 42.1 bits (21), Expect = 5.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 735 ttcatcgccggcagcgcagcg 755 ||||||||||||||||||||| Sbjct: 1471059 ttcatcgccggcagcgcagcg 1471039
>gb|AC161246.2| Mus musculus BAC clone RP24-421E18 from chromosome 9, complete sequence Length = 201524 Score = 42.1 bits (21), Expect = 5.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 942 gccttttgttcttttgttttg 962 ||||||||||||||||||||| Sbjct: 183774 gccttttgttcttttgttttg 183754
>gb|AC136491.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0062E06, complete sequence Length = 158842 Score = 42.1 bits (21), Expect = 5.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 380 ccttcccccttccttcctcctccgc 404 |||||||||||||| |||||||||| Sbjct: 59098 ccttcccccttcctccctcctccgc 59074
>gb|AC131744.3| Mus musculus BAC clone RP23-50E10 from chromosome 3, complete sequence Length = 225416 Score = 42.1 bits (21), Expect = 5.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 945 ttttgttcttttgttttgatttatt 969 |||||||||||||||||| |||||| Sbjct: 9534 ttttgttcttttgttttgttttatt 9510
>gb|AC139334.3| Mus musculus BAC clone RP23-449C21 from chromosome 18, complete sequence Length = 194665 Score = 42.1 bits (21), Expect = 5.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1229 gagagagagcatgtatgtagg 1249 ||||||||||||||||||||| Sbjct: 122891 gagagagagcatgtatgtagg 122871
>gb|AC117249.3| Mus musculus BAC clone RP24-347M10 from 8, complete sequence Length = 177116 Score = 42.1 bits (21), Expect = 5.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 380 ccttcccccttccttcctcct 400 ||||||||||||||||||||| Sbjct: 92566 ccttcccccttccttcctcct 92586
>gb|DQ007936.1| Neisseria sicca pilin (pilE1) gene, partial cds; and pilin (pilE2) gene, complete cds Length = 2418 Score = 42.1 bits (21), Expect = 5.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 945 ttttgttcttttgttttgatt 965 ||||||||||||||||||||| Sbjct: 1117 ttttgttcttttgttttgatt 1097
>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome Length = 4940217 Score = 42.1 bits (21), Expect = 5.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1279 tgttggtgtgttggcaaatag 1299 ||||||||||||||||||||| Sbjct: 860709 tgttggtgtgttggcaaatag 860689
>gb|AC063960.10| Homo sapiens chromosome 10 clone RP11-105F10, complete sequence Length = 174677 Score = 42.1 bits (21), Expect = 5.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 1090 catatattttttccttttatttctt 1114 ||||||||||||||| ||||||||| Sbjct: 70459 catatattttttcctcttatttctt 70435
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11 Length = 28386948 Score = 42.1 bits (21), Expect = 5.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 380 ccttcccccttccttcctcctccgc 404 |||||||||||||| |||||||||| Sbjct: 17769447 ccttcccccttcctccctcctccgc 17769423
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4 Length = 35498469 Score = 42.1 bits (21), Expect = 5.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1062 atctggggttcaaatcctaga 1082 ||||||||||||||||||||| Sbjct: 19052169 atctggggttcaaatcctaga 19052149
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3 Length = 36192742 Score = 42.1 bits (21), Expect = 5.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 136 tccgtcgtctccggcaccggc 156 ||||||||||||||||||||| Sbjct: 33523442 tccgtcgtctccggcaccggc 33523422
>emb|AL356967.23| Human DNA sequence from clone RP11-427E4 on chromosome 6 Contains a novel pseudogene, complete sequence Length = 163869 Score = 42.1 bits (21), Expect = 5.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1090 catatattttttccttttatt 1110 ||||||||||||||||||||| Sbjct: 155434 catatattttttccttttatt 155414
>emb|AL136219.17| Human DNA sequence from clone RP11-149B7 on chromosome 13 Contains a glyceraldehyde-3-phosphate dehydrogenase (GAPD)(GAPDH) pseudogene, 2 novel genes, a H2B histone family, member H (H2BFH)(H2B.h, H2B/h, dJ221C16.8) pseudogene, the 3' end of the EFHA1 gene for EF hand domain family, member A1 and three CpG islands, complete sequence Length = 167830 Score = 42.1 bits (21), Expect = 5.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 945 ttttgttcttttgttttgatttatt 969 |||||||||||||||||| |||||| Sbjct: 74157 ttttgttcttttgttttgttttatt 74133
>gb|AC160128.2| Mus musculus BAC clone RP23-286G17 from chromosome 12, complete sequence Length = 202315 Score = 42.1 bits (21), Expect = 5.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1094 tattttttccttttatttctt 1114 ||||||||||||||||||||| Sbjct: 105989 tattttttccttttatttctt 105969
>gb|AC121769.4| Mus musculus BAC clone RP23-340N4 from chromosome 5, complete sequence Length = 186413 Score = 42.1 bits (21), Expect = 5.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1094 tattttttccttttatttctt 1114 ||||||||||||||||||||| Sbjct: 52695 tattttttccttttatttctt 52675
>gb|AC135958.2| Oryza sativa chromosome 3 BAC OSJNBa0059E14 genomic sequence, complete sequence Length = 154555 Score = 42.1 bits (21), Expect = 5.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 136 tccgtcgtctccggcaccggc 156 ||||||||||||||||||||| Sbjct: 65179 tccgtcgtctccggcaccggc 65199
>gb|AC104593.7| Homo sapiens chromosome 15, clone RP11-976K17, complete sequence Length = 46983 Score = 42.1 bits (21), Expect = 5.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 956 tgttttgatttattcctgcag 976 ||||||||||||||||||||| Sbjct: 42034 tgttttgatttattcctgcag 42054
>gb|AC008539.6| Homo sapiens chromosome 5 clone CTC-493L21, complete sequence Length = 138633 Score = 42.1 bits (21), Expect = 5.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 382 ttcccccttccttcctcctcc 402 ||||||||||||||||||||| Sbjct: 1823 ttcccccttccttcctcctcc 1843
>emb|AL691456.7| Mouse DNA sequence from clone RP23-468K2 on chromosome 4 Contains part of the Astn2 gene for astrotactin 2 and the Trim32 gene for tripartite motif protein 32, complete sequence Length = 158960 Score = 42.1 bits (21), Expect = 5.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 943 ccttttgttcttttgttttgattta 967 |||||||||| |||||||||||||| Sbjct: 8857 ccttttgttcatttgttttgattta 8881
>emb|AL731601.3|OSJN00245 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0044M19, complete sequence Length = 188317 Score = 42.1 bits (21), Expect = 5.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1062 atctggggttcaaatcctaga 1082 ||||||||||||||||||||| Sbjct: 144094 atctggggttcaaatcctaga 144074
>emb|AL590614.8| Mouse DNA sequence from clone RP23-9O16 on chromosome 13 Contains the 3' end of the gene for a novel protein similar to nuclear envelope pore membrane protein POM121, the Prss16 gene for thymus serine protease16, three novel genes, the genes for two H2a, two H2b and one H4 histone family members, a ribosomal protein L37A (Rpl37a) pseudogene, a novel pseudogene, three genes for novel vomeronasal 1 receptor H (V1rh) family members, the gene for a novel vomeronasal 1 receptor I (V1ri) family member, six V1ri pseudogenes, a V1rh pseudogene and six CpG islands, complete sequence Length = 210845 Score = 42.1 bits (21), Expect = 5.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1398 ttcctcccttccttgtttgct 1418 ||||||||||||||||||||| Sbjct: 4769 ttcctcccttccttgtttgct 4749 Score = 42.1 bits (21), Expect = 5.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1137 ttcctcccttccttgtttgct 1157 ||||||||||||||||||||| Sbjct: 4769 ttcctcccttccttgtttgct 4749
>gb|AC084807.12|AC084807 Arabidopsis thaliana chromosome 1 BAC T18F15 genomic sequence, complete sequence Length = 81704 Score = 42.1 bits (21), Expect = 5.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 945 ttttgttcttttgttttgatttatt 969 |||| |||||||||||||||||||| Sbjct: 72786 ttttattcttttgttttgatttatt 72762
>gb|AC154807.2| Mus musculus BAC clone RP23-79E7 from chromosome 16, complete sequence Length = 256130 Score = 42.1 bits (21), Expect = 5.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 945 ttttgttcttttgttttgatttatt 969 ||||||| ||||||||||||||||| Sbjct: 178240 ttttgtttttttgttttgatttatt 178216
>gb|AC074228.9|AC074228 Arabidopsis thaliana chromosome 1 BAC T7O23 genomic sequence, complete sequence Length = 72832 Score = 42.1 bits (21), Expect = 5.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 945 ttttgttcttttgttttgatttatt 969 |||| |||||||||||||||||||| Sbjct: 2234 ttttattcttttgttttgatttatt 2210
>emb|BX908757.10| Zebrafish DNA sequence from clone DKEY-206L1 in linkage group 22, complete sequence Length = 143845 Score = 42.1 bits (21), Expect = 5.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 945 ttttgttcttttgttttgatt 965 ||||||||||||||||||||| Sbjct: 141649 ttttgttcttttgttttgatt 141629
>gb|AC006346.1|AC006346 Homo sapiens PAC clone RP5-820G22 from 7, complete sequence Length = 130336 Score = 42.1 bits (21), Expect = 5.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1094 tattttttccttttatttctt 1114 ||||||||||||||||||||| Sbjct: 12534 tattttttccttttatttctt 12554
>emb|AL953841.5| Zebrafish DNA sequence from clone DKEY-44G23 in linkage group 22, complete sequence Length = 219929 Score = 42.1 bits (21), Expect = 5.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 945 ttttgttcttttgttttgatt 965 ||||||||||||||||||||| Sbjct: 44086 ttttgttcttttgttttgatt 44066
>gb|AC010361.3|AC010361 Homo sapiens chromosome 5 clone CTD-2035K4, complete sequence Length = 141674 Score = 42.1 bits (21), Expect = 5.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 382 ttcccccttccttcctcctcc 402 ||||||||||||||||||||| Sbjct: 121667 ttcccccttccttcctcctcc 121687
>gb|CP000102.1| Methanosphaera stadtmanae DSM 3091, complete genome Length = 1767403 Score = 42.1 bits (21), Expect = 5.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 1054 atcaggggatctggggttcaaatcc 1078 ||||||||||| ||||||||||||| Sbjct: 669077 atcaggggatcgggggttcaaatcc 669101
>gb|AC102480.8| Mus musculus chromosome 3, clone RP24-423L4, complete sequence Length = 189940 Score = 42.1 bits (21), Expect = 5.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 945 ttttgttcttttgttttgatttatt 969 |||||||||||||||||| |||||| Sbjct: 27699 ttttgttcttttgttttgttttatt 27723
>gb|AC146295.3| Mus musculus BAC clone RP24-134N2 from 8, complete sequence Length = 181261 Score = 42.1 bits (21), Expect = 5.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 380 ccttcccccttccttcctcct 400 ||||||||||||||||||||| Sbjct: 131763 ccttcccccttccttcctcct 131743
>emb|BX936450.6| Zebrafish DNA sequence from clone CH211-232I12 in linkage group 17, complete sequence Length = 167918 Score = 42.1 bits (21), Expect = 5.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 1094 tattttttccttttatttcttgctg 1118 |||||||| |||||||||||||||| Sbjct: 142446 tattttttacttttatttcttgctg 142470
>emb|AJ621802.1| Leptosphaeria maculans subsp. brassicae minisatellite DNA, locus MinLm3, isolate ME7 Length = 336 Score = 42.1 bits (21), Expect = 5.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 380 ccttcccccttccttcctcct 400 ||||||||||||||||||||| Sbjct: 200 ccttcccccttccttcctcct 180
>emb|CR382132.1| Yarrowia lipolytica chromosome F of strain CLIB122 of Yarrowia lipolytica Length = 4003362 Score = 42.1 bits (21), Expect = 5.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 1094 tattttttccttttatttcttgctg 1118 ||||||| ||||||||||||||||| Sbjct: 1682378 tatttttgccttttatttcttgctg 1682402
>gb|AC002113.1|HSAC002113 Human Cosmid g1862x083 from 7q31.3, complete sequence Length = 43307 Score = 42.1 bits (21), Expect = 5.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1094 tattttttccttttatttctt 1114 ||||||||||||||||||||| Sbjct: 29322 tattttttccttttatttctt 29342 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 244,847,927 Number of extensions: 14935110 Number of successful extensions: 339635 Number of sequences better than 10.0: 69 Number of HSP's gapped: 339634 Number of HSP's successfully gapped: 76 Length of query: 1489 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 1466 Effective length of database: 18,503,978,556 Effective search space: 27126832563096 Effective search space used: 27126832563096 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)
