>LOC_Os08g44320:12008.t04156:unspliced-genomic low molecular weight protein-tyrosine-phosphatase slr0328, putative,|
expressed
Length = 4144
Score = 89.0 bits (188), Expect(6) = 4e-75
Identities = 39/58 (67%), Positives = 45/58 (77%)
Frame = +3 / +2
Query: 327 PFAVLFVCLGNICRSPAAEAVFRNLVSKRGLKSKFQIDSAGTIGYHEGNKADSRMIST 500
P + V GNICRSPAAEAVFRNLVSKRGL+SKF IDSAGTIGYHE ++ ++ T
Sbjct: 1304 PVLM*IVYTGNICRSPAAEAVFRNLVSKRGLESKFLIDSAGTIGYHEVVFCNTMLVCT 1477
Score = 76.2 bits (160), Expect(6) = 4e-75
Identities = 28/30 (93%), Positives = 29/30 (96%)
Frame = +3 / +3
Query: 672 VKLMCSYCKRHTESEVPDPYYGGAKGFEKV 761
VKLMCSYCKRHTESEVPDPYYGG +GFEKV
Sbjct: 2910 VKLMCSYCKRHTESEVPDPYYGGPQGFEKV 2999
Score = 74.8 bits (157), Expect(6) = 4e-75
Identities = 31/42 (73%), Positives = 37/42 (88%)
Frame = +2 / +2
Query: 476 GRLKDDINFQEAGD*GDLNIQAYQTLRFPNF*SYPCNGQAKL 601
GRLKD+I+F+E G+*GDL+IQA QTLR P F*SYPCNG A+L
Sbjct: 1538 GRLKDEISFKEEGN*GDLHIQACQTLRLPRF*SYPCNG*AEL 1663
Score = 65.7 bits (137), Expect(6) = 4e-75
Identities = 23/28 (82%), Positives = 25/28 (89%)
Frame = +1 / +2
Query: 757 RYWICWKMHASHYLTASWRRMKTFLLDL 840
R WICWK HASHYLTASW+RM+ FLLDL
Sbjct: 3833 RCWICWKTHASHYLTASWQRMQAFLLDL 3916
Score = 59.3 bits (123), Expect(6) = 4e-75
Identities = 20/30 (66%), Positives = 27/30 (90%)
Frame = +3 / +3
Query: 603 EDILSSFDRWQHKETLPDSGPKKVKLMCSY 692
ED+LSSF+RW+H+E LPDSGPKKV+++ Y
Sbjct: 1758 EDLLSSFERWRHREPLPDSGPKKVRMLICY 1847
Score = 28.1 bits (55), Expect(6) = 4e-75
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +3 / +2
Query: 105 HPTARDPFKRRTTHPLVAATNRH 173
+PT R P +RR P + A +RH
Sbjct: 164 NPTTRYPVRRRVPRPPLVAASRH 232
Score = 83.5 bits (176), Expect(7) = 1e-56
Identities = 37/45 (82%), Positives = 39/45 (86%)
Frame = -1 / -1
Query: 601 *FCLSIARIRSKIRKSEGLIGLDIEVTSIPRFLEVDIILESALFP 467
*FCLSIARIRSK RKSEGL GLD+EVTSIP F E D+ILESAL P
Sbjct: 1663 *FCLSIARIRSKSRKSEGLTGLDMEVTSIPLFFEADLILESALLP 1529
Score = 66.6 bits (139), Expect(7) = 1e-56
Identities = 31/39 (79%), Positives = 32/39 (82%)
Frame = -1 / -2
Query: 460 *PIVPAESI*NLDLSPRLLTRFRKTASAAGLLQMFPRQT 344
*PIVPAES+ NLD SPRLLTRFR TASAAGL QM P T
Sbjct: 1437 *PIVPAESMRNLDSSPRLLTRFRNTASAAGLRQMLPVYT 1321
Score = 55.6 bits (115), Expect(7) = 1e-56
Identities = 22/28 (78%), Positives = 22/28 (78%)
Frame = -2 / -1
Query: 840 EIKQKCFHSPP*CCQVMTRMHLPADPVP 757
EIKQK HS P CCQVMTRM LPADP P
Sbjct: 3916 EIKQKRLHSLPRCCQVMTRMRLPADPAP 3833
Score = 52.8 bits (109), Expect(7) = 1e-56
Identities = 21/32 (65%), Positives = 27/32 (84%)
Frame = -3 / -3
Query: 761 YLFESLSTSIVRIWNFRLSMPLAIGAHELNLL 666
+LF+SL SI+RIW+F LSM LAIG H+LNL+
Sbjct: 2999 HLFKSLRASIIRIWDF*LSMTLAIGTHQLNLV 2904
Score = 40.5 bits (82), Expect(7) = 1e-56
Identities = 15/20 (75%), Positives = 17/20 (85%)
Frame = -2 / -2
Query: 675 *PSWVHYLGGSPCVAICQMS 616
*PSWVH LGG PCV+I QM+
Sbjct: 1830 *PSWVHCLGGVPCVSISQMN 1771
Score = 27.2 bits (53), Expect(7) = 1e-56
Identities = 10/11 (90%), Positives = 10/11 (90%)
Frame = -1 / -2
Query: 355 PRQTKRTAKGF 323
PRQTKRT KGF
Sbjct: 438 PRQTKRTEKGF 406
Score = 22.6 bits (43), Expect(7) = 1e-56
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = -3 / -3
Query: 935 WLKES*STSL*LIPGTIK*KCDAYIGSR 852
WL ES S + + K DAYI SR
Sbjct: 4010 WLSESQSNGIDRF*SWLHRKNDAYIASR 3927
Score = 98.2 bits (208), Expect(6) = 3e-52
Identities = 41/50 (82%), Positives = 45/50 (90%)
Frame = +3 / +3
Query: 453 IGYHEGNKADSRMISTSKKRGIEVTSISRPIKPSDFRIFDLILAMDRQNY 602
+ + +GNKADSRM S SKKRGIEVTSISRP+KPSDFR FDLILAMDRQNY
Sbjct: 1515 VAWIQGNKADSRMRSASKKRGIEVTSISRPVKPSDFRDFDLILAMDRQNY 1664
Score = 55.6 bits (115), Expect(6) = 3e-52
Identities = 24/29 (82%), Positives = 28/29 (96%)
Frame = +3 / +1
Query: 756 KVLDLLEDACESLLDSIMAENENISA*SQ 842
+VLDLLEDACESLLDSI+AEN ++SA*SQ
Sbjct: 3832 QVLDLLEDACESLLDSIVAENASVSA*SQ 3918
Score = 50.1 bits (103), Expect(6) = 3e-52
Identities = 22/32 (68%), Positives = 25/32 (78%)
Frame = +2 / +1
Query: 374 CS*GRLPEPRQQART*VQVSDRLCWHYRLS*G 469
CS*G +PEPR+QA *VQVS RLCW+ L *G
Sbjct: 1351 CS*GCVPEPREQAWA*VQVSHRLCWYNWLP*G 1446
Score = 41.8 bits (85), Expect(6) = 3e-52
Identities = 16/26 (61%), Positives = 19/26 (73%)
Frame = +1 / +1
Query: 598 IMKTF*AHLTDGNTRRPSQIVDPRRL 675
+ KT+ HL DG+T PSQ VDPRRL
Sbjct: 1753 VQKTYSVHLRDGDTGNPSQTVDPRRL 1830
Score = 40.9 bits (83), Expect(6) = 3e-52
Identities = 20/30 (66%), Positives = 21/30 (70%)
Frame = +1 / +1
Query: 670 RLSSCAPIASGILSLKFQILTMEVLRDSKR 759
RLS C PIAS ILS K QI ME L+D KR
Sbjct: 2908 RLS*CVPIASVILSQKSQIRIMEALKDLKR 2997
Score = 28.6 bits (56), Expect(6) = 3e-52
Identities = 10/11 (90%), Positives = 11/11 (100%)
Frame = +3 / +2
Query: 324 KPFAVLFVCLG 356
KPF+VLFVCLG
Sbjct: 407 KPFSVLFVCLG 439
Score = 70.3 bits (147), Expect(5) = 3e-44
Identities = 32/46 (69%), Positives = 35/46 (76%)
Frame = -2 / -2
Query: 603 HNFACPLQG*DQKFGNLRV**AWILRSPQSPASWKLISSLSRPYFP 466
HN A PLQG*DQ G+ RV* AWI RSPQ P+S KLISSLS P +P
Sbjct: 1665 HNSAYPLQG*DQNLGSRRV*QAWIWRSPQFPSSLKLISSLSLPCYP 1528
Score = 58.3 bits (121), Expect(5) = 3e-44
Identities = 25/38 (65%), Positives = 28/38 (73%)
Frame = -3 / -1
Query: 470 SLMITYSASRVYLKLGLKSALADEVPEDGLSCRTPTNV 357
+LM+T SRVY KLGLK LA EVPE LSCR PT+V
Sbjct: 1447 NLMVTNCTSRVYEKLGLKPTLAHEVPEHSLSCRAPTDV 1334
Score = 53.8 bits (111), Expect(5) = 3e-44
Identities = 24/29 (82%), Positives = 26/29 (89%)
Frame = -3 / -2
Query: 842 LRSSRNVFILRHDAVK**LACIFQQIQYL 756
LRSSRN IL HDAVK**LAC+FQQIQ+L
Sbjct: 3918 LRSSRNACILCHDAVK**LACVFQQIQHL 3832
Score = 46.0 bits (94), Expect(5) = 3e-44
Identities = 21/27 (77%), Positives = 23/27 (85%)
Frame = -1 / -1
Query: 751 NPLAPP**GSGTSDSVCRLQ*EHMSLT 671
NP PP* GSGTSDSV RLQ*EH++LT
Sbjct: 2989 NP*GPP*YGSGTSDSV*RLQ*EHINLT 2909
Score = 40.0 bits (81), Expect(5) = 3e-44
Identities = 17/27 (62%), Positives = 20/27 (74%)
Frame = -3 / -3
Query: 674 NLLGSTIWEGLLVLPSVK*AQNVFIIL 594
NLLGST+WEG V PS+K* + VF L
Sbjct: 1829 NLLGSTVWEGFPVSPSLK*TE*VFCTL 1749
Score = 72.5 bits (152), Expect(4) = 6e-29
Identities = 33/46 (71%), Positives = 34/46 (73%)
Frame = +1 / +1
Query: 466 REIRPTQG*YQLPRSGGLR*PQYPGLSNPQISEFLILSLQWTGKIM 603
R R TQG* QL R G LR*P YPGLSNP SE LILSLQW G+IM
Sbjct: 1528 RVTRQTQG*DQLQRRGELR*PPYPGLSNPPTSEILILSLQWIGRIM 1665
Score = 49.6 bits (102), Expect(4) = 6e-29
Identities = 22/28 (78%), Positives = 22/28 (78%)
Frame = +2 / +3
Query: 758 GTGSAGRCMRVIT*QHHGGE*KHFCLIS 841
G GSAGR MRVIT*QH G E K FCLIS
Sbjct: 3834 GAGSAGRRMRVIT*QHRGRECKRFCLIS 3917
Score = 38.2 bits (77), Expect(4) = 6e-29
Identities = 16/24 (66%), Positives = 18/24 (75%)
Frame = +2 / +2
Query: 605 RHFELI*QMATQGDPPR*WTQEG* 676
R + I*+M TQG PPR WTQEG*
Sbjct: 1760 RPTQFI*EMETQGTPPRQWTQEG* 1831
Score = 35.4 bits (71), Expect(4) = 6e-29
Identities = 19/30 (63%), Positives = 21/30 (70%)
Frame = +2 / +2
Query: 671 G*AHVLLLQAAY*V*SSRSLLWRC*GIRKG 760
G* V LLQA+Y*V S RS+LWR I KG
Sbjct: 2909 G*VDVFLLQASY*VRSPRSVLWRPSRI*KG 2998
Score = 53.3 bits (110), Expect(4) = 2e-21
Identities = 23/37 (62%), Positives = 25/37 (67%)
Frame = -2 / -3
Query: 468 PHDNL*CQQSLSETWT*VRAC*RGSGRRPQLQDSYKC 358
PH N QQSL ETWT AC RGSG +PQLQ S +C
Sbjct: 1445 PHGNQLYQQSL*ETWTQAHACSRGSGTQPQLQGSDRC 1335
Score = 52.4 bits (108), Expect(4) = 2e-21
Identities = 24/35 (68%), Positives = 24/35 (68%)
Frame = -1 / -1
Query: 676 LTFLGPLSGRVSLCCHLSNELKMSS*FCLSIARIR 572
LTFLGPLSGR SLC HLSNEL SS C IR
Sbjct: 1831 LTFLGPLSGRGSLCLHLSNELSRSSAHCSK*KHIR 1727
Score = 41.4 bits (84), Expect(4) = 2e-21
Identities = 19/31 (61%), Positives = 22/31 (70%)
Frame = -2 / -2
Query: 759 PFRIP*HLHSKDLELQTQYAACNRST*A*PS 667
PF+I LH+ DL L TQY ACNR+T *PS
Sbjct: 2997 PFQILEGLHNTDLGLLTQYDACNRNTST*PS 2905
Score = 22.6 bits (43), Expect(4) = 2e-21
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = -1 / -3
Query: 841 *DQAEMFSFSAMML 800
*DQAE +FSA ML
Sbjct: 3917 *DQAETLAFSATML 3876
Score = 83.1 bits (175), Expect = 3e-15
Identities = 37/59 (62%), Positives = 45/59 (76%)
Frame = -3 / -3
Query: 602 IILPVHCKDKIKNSEI*GFDRPGY*GHLNPPLLGS*YHP*VGLISLMITYSASRVYLKL 426
IILP+HCKDKIK SE+ GFDRPGY GHLN PLL S* HP*V L++L + ++S + L
Sbjct: 1664 IILPIHCKDKIKISEVGGFDRPGYGGHLNSPLL*S*SHP*VCLVTLNPSNTSSMMMSSL 1488
>LOC_Os03g52300:12003.t04556:unspliced-genomic conserved hypothetical protein|
Length = 2764
Score = 54.7 bits (113), Expect = 1e-06
Identities = 23/41 (56%), Positives = 29/41 (70%)
Frame = +1 / -3
Query: 763 WICWKMHASHYLTASWRRMKTFLLDLRMNCLEPM*ASHFYL 885
WICWK HASHYLTAS +RM++ + LE M*AS F++
Sbjct: 2411 WICWKTHASHYLTASLQRMQSVSA*SE*SYLEAM*ASFFHV 2289
Score = 49.2 bits (101), Expect = 5e-05
Identities = 21/49 (42%), Positives = 26/49 (53%)
Frame = -2 / +3
Query: 903 IDPWYNQIKMRCLHWLEAIHSEIKQKCFHSPP*CCQVMTRMHLPADPVP 757
ID + ++ CLH L+ + HS CCQVMT M LPADP P
Sbjct: 2271 IDTEHGYMEK*CLHCLQIASFRSSRNALHSLQRCCQVMTCMRLPADPAP 2417
Score = 46.4 bits (95), Expect = 3e-04
Identities = 23/40 (57%), Positives = 28/40 (70%)
Frame = -3 / +1
Query: 878 KCDAYIGSRQFILRSSRNVFILRHDAVK**LACIFQQIQY 759
K DAYI SR + + IL +DAVK**LAC+FQQIQ+
Sbjct: 2296 KNDAYIASR*LHSDQAETLCILCNDAVK**LACVFQQIQH 2415
Score = 43.7 bits (89), Expect = 0.002
Identities = 18/20 (90%), Positives = 20/20 (100%)
Frame = +3 / -2
Query: 759 VLDLLEDACESLLDSIMAEN 818
VLDLLEDAC+SLLDSI+AEN
Sbjct: 2415 VLDLLEDACKSLLDSIVAEN 2356
Score = 40.0 bits (81), Expect = 0.027
Identities = 21/38 (55%), Positives = 22/38 (57%)
Frame = +2 / -1
Query: 758 GTGSAGRCMRVIT*QHHGGE*KHFCLISE*IASSQCKH 871
G GSAGR M+VIT*QH E K F L QCKH
Sbjct: 2416 GAGSAGRRMQVIT*QHRCRECKAFLLDLNEAIWRQCKH 2303
>LOC_Os06g44150:12006.t04103:unspliced-genomic MRS2-10, putative, expressed|
Length = 4096
Score = 24.9 bits (48), Expect(2) = 9.8
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = +3 / -3
Query: 624 DRWQHKETLPDSGPKKVKLMCSYC 695
D Q LP+ KK+ L+CS C
Sbjct: 2843 DMLQFPIQLPEQREKKILLICSKC 2772
Score = 23.5 bits (45), Expect(2) = 9.8
Identities = 7/13 (53%), Positives = 10/13 (76%)
Frame = +2 / -3
Query: 773 GRCMRVIT*QHHG 811
G+CMR++ QH G
Sbjct: 2672 GKCMRLVVKQHFG 2634
Database: tigr.seq.out
Posted date: Jul 20, 2007 8:58 AM
Number of letters in database: 166,841,660
Number of sequences in database: 56,278
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Sequences: 56278
Number of Hits to DB: 348,992,873
Number of extensions: 4992894
Number of successful extensions: 20640
Number of sequences better than 10.0: 30
Length of query: 337
Length of database: 55,613,886
Length adjustment: 50
Effective length of query: 287
Effective length of database: 52,799,986
Effective search space: 15153595982
Effective search space used: 15153595982
Neighboring words threshold: 13
Window for multiple hits: 40
X1: 16 ( 7.3 bits)