ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf29j02 |
|---|---|
| Clone Library Name | barley_pub |
>Q9Y5K1:SPO11_HUMAN Meiotic recombination protein SPO11 - Homo sapiens (Human)| Length = 396 Score = 166 bits (421), Expect = 2e-40 Identities = 102/297 (34%), Positives = 176/297 (59%), Gaps = 7/297 (2%) Frame = +2 Query: 308 AKAFVRVWKVMEMCYKILGEGKLVTQRELFYKLLSDSPKYFSCQRHVNQTIQDVVSLLRC 487 A+ F + K++ M YK++ T+R+++Y +DS + F Q V+ I D+ +L+ Sbjct: 108 AQKFSLILKILSMIYKLVQSNTYATKRDIYY---TDS-QLFGNQTVVDNIINDISCMLKV 163 Query: 488 TRQSLGIMASSRGALIGRLVLHEPEEEHIDCSILGPSGHAITGDLNQLSRLNLSSDARYL 667 +R+SL I+++S+G + G L E + ++C+ G + A+ ++ + NL +DA+++ Sbjct: 164 SRRSLHILSTSKGLIAGNLRYIEEDGTKVNCTC-GATAVAVPSNIQGIR--NLVTDAKFV 220 Query: 668 ILVEKDAIFQRLAEDRLYNQL-PCILITAKGYPDIATRFILHRLSQTFPNMPIFALVDWN 844 ++VEKDA FQRL +D N+L PCI+IT KG PD+ TR ++ +L TF ++P+F LVD + Sbjct: 221 LIVEKDATFQRLLDDNFCNKLSPCIMITGKGVPDLNTRLLVKKLWDTF-HVPVFTLVDAD 279 Query: 845 PAGLSILCTYKYGSISMGLESYRYAC-NVKWLGLRGDDLQL--IPQSSFQELKPRDLQVA 1015 P G+ I+C YKYGS+SM E++ ++WLGL DL+ +P+ S L RD Sbjct: 280 PHGIEIMCIYKYGSMSMSFEAHHLTVPAIRWLGLLPSDLKRLNVPKDSLIPLTKRDQMKL 339 Query: 1016 KSLLSSKFL--QDTHRAELTRMVETGTRAEVEALYCHGFDFLGK-FIARKIVQGDYI 1177 S+L ++ Q R E+ M ++ +AE++AL D+L + ++ K+ G +I Sbjct: 340 DSILRRPYVTCQPFWRKEMEIMADSKMKAEIQALTFLSSDYLSRVYLPNKLKFGGWI 396
>Q9WTK8:SPO11_MOUSE Meiotic recombination protein SPO11 - Mus musculus (Mouse)| Length = 396 Score = 164 bits (416), Expect = 7e-40 Identities = 100/296 (33%), Positives = 168/296 (56%), Gaps = 7/296 (2%) Frame = +2 Query: 311 KAFVRVWKVMEMCYKILGEGKLVTQRELFYKLLSDSPKYFSCQRHVNQTIQDVVSLLRCT 490 K F + KV+ M YK++ T+R+++Y +DS + F Q V+ I D+ +L+ Sbjct: 109 KKFALILKVLSMIYKLIQSDTYATKRDIYY---TDS-QLFGNQAAVDSAIDDISCMLKVP 164 Query: 491 RQSLGIMASSRGALIGRLVLHEPEEEHIDCSILGPSGHAITGDLNQLSRLNLSSDARYLI 670 R+SL ++++S+G + G L E + + C+ S A N +L +DA++L+ Sbjct: 165 RRSLHVLSTSKGLIAGNLRYMEEDGTRVQCTC---SATATAVPTNIQGMQHLITDAKFLL 221 Query: 671 LVEKDAIFQRLAEDRLYNQL-PCILITAKGYPDIATRFILHRLSQTFPNMPIFALVDWNP 847 +VEKDA FQRL +D +++ PCI++T KG PD+ TR ++ +L TF ++P+F LVD +P Sbjct: 222 IVEKDATFQRLLDDNFCSRMSPCIMVTGKGVPDLNTRLLVKKLWDTF-HIPVFTLVDADP 280 Query: 848 AGLSILCTYKYGSISMGLESYRYAC-NVKWLGLRGDDLQL--IPQSSFQELKPRDLQVAK 1018 G+ I+C YKYGS+SM E++ ++WLGL D+Q IP+ S L D Sbjct: 281 YGIEIMCIYKYGSMSMSFEAHNLTIPTIRWLGLLPSDIQRLNIPKDSLIPLTKHDQMKLD 340 Query: 1019 SLLSSKFL--QDTHRAELTRMVETGTRAEVEALYCHGFDFLGK-FIARKIVQGDYI 1177 S+L ++ Q + EL M ++ +AE++AL D+L + ++ K+ G +I Sbjct: 341 SILKRPYITYQPLWKKELEMMADSKMKAEIQALTLLSSDYLSRVYLPNKLRFGGWI 396
>P40384:REC12_SCHPO Meiotic recombination protein rec12 - Schizosaccharomyces pombe| (Fission yeast) Length = 345 Score = 111 bits (278), Expect = 7e-24 Identities = 73/268 (27%), Positives = 146/268 (54%), Gaps = 5/268 (1%) Frame = +2 Query: 323 RVWKVMEMCYKILGEGKLVTQRELFYKLLSDSPKYFSCQRHVNQTIQDVVSLLRCTRQSL 502 ++++V++ ++ + ++T+R+++Y+ + F Q V++ + D+ + + C+R L Sbjct: 73 QLFRVLDCVHEAVISDTVITKRDIYYRDVD----LFKRQTVVDELLGDISNTIGCSRSDL 128 Query: 503 GIMASSRGALIGRLVLHEPEEEHIDCSILGP---SGHAITGDLNQLSRLNLSSDARYLIL 673 + AS++G + G + H E + P S H I+ +++S A+++++ Sbjct: 129 NVEASAKGLVFGSI--HIALENGTVITATKPLLISHHRIS---------SITSTAKWVLV 177 Query: 674 VEKDAIFQRLAEDRLYNQLPCILITAKGYPDIATRFILHRLSQTFPNMPIFALVDWNPAG 853 +EK+A+FQ L E+ L + I++TAKG+PD+ TR L +L++ P+ F + DW+P G Sbjct: 178 IEKEAVFQTLTEEALADT---IIVTAKGFPDLMTRKFLVKLAKALPDAKFFGIFDWDPHG 234 Query: 854 LSILCTYKYGSISMGLESYRYACNVKWLGLRGDDLQLIPQSSFQELKPRDLQVAKSLLSS 1033 L I +KYGS + E + N++ LG +D+ Q +L RD+++ +LL Sbjct: 235 LCIYSCFKYGSNAYSHEPHSQLRNLQLLGPLYEDIFNKNQEFSLKLNKRDIKMITTLLQF 294 Query: 1034 KFLQ--DTHRAELTRMVETGTRAEVEAL 1111 + Q R +L RM+ +AE++A+ Sbjct: 295 EGFQKEPVVREQLQRMLFIQKKAEIQAI 322
>Q9YE67:TOP6A_AERPE Type II DNA topoisomerase VI subunit A - Aeropyrum pernix| Length = 389 Score = 106 bits (264), Expect = 3e-22 Identities = 90/327 (27%), Positives = 158/327 (48%), Gaps = 28/327 (8%) Frame = +2 Query: 281 KRSLMRENDAKAFVRVWKVMEMCYKILGEGKLVTQRELFYK-----LLSD------SPKY 427 +R + +++ F++ + + Y+ L E + T R+L+YK + D Sbjct: 68 EREFLNVGESRRFMQTLLMASIIYQSLIENEYPTIRDLYYKGKHTIVYRDYSGRKREENT 127 Query: 428 FSCQRHVNQTIQDVVSLLRCTRQSLGIMASSRGALIGRLVLHEPEEEHIDCSILGPSGHA 607 + Q+ + IQD+ R+ + I++ +G ++G + + + ID S LG +A Sbjct: 128 WDEQKESDSVIQDIEVYTGLFREDMLILSKEKGKVVGNMRIRSGGDV-IDLSKLGHGAYA 186 Query: 608 I--TGDLNQLSRLNLSSDARYLILVEKDAIFQRLAEDRLYNQLPCILITAKGYPDIATRF 781 I T DL + L DA ++++VEKDA+FQ+L + + +L+T G PD ATR Sbjct: 187 IEPTPDLIEF----LDVDAEFVLVVEKDAVFQQLHRAGFWKKYKALLVTGSGQPDRATRR 242 Query: 782 ILHRLSQTFPNMPIFALVDWNPAGLSILCTYKYGSISMGLESYRYAC-NVKWLGLRGDDL 958 + RL + +P++ + D +P G I YK GSI++ ES R A K+LG++ D+ Sbjct: 243 FVRRLHEEL-KLPVYIITDSDPYGWYIYSVYKVGSITLSYESERLATPKAKFLGVQMTDI 301 Query: 959 ----QLIPQSSFQELK-------PRDLQVAKSLLSSKFLQDTHR--AELTRMVETGTRAE 1099 P S E K +D++ AK LL+ ++ R E+ ++ + E Sbjct: 302 FGYRGKKPYLSEAERKKFMIKATDKDIKRAKELLNYSWIGKNRRWNVEIRLFLKHLVKLE 361 Query: 1100 VEALYCHGFDFLG-KFIARKIVQGDYI 1177 +EA+ G F ++I KI GD+I Sbjct: 362 IEAIASKGLKFFAYQYIPEKIETGDWI 388
>O05208:TOP6A_SULSH Type II DNA topoisomerase VI subunit A - Sulfolobus shibatae| Length = 389 Score = 105 bits (263), Expect = 4e-22 Identities = 85/327 (25%), Positives = 159/327 (48%), Gaps = 28/327 (8%) Frame = +2 Query: 281 KRSLMRENDAKAFVRVWKVMEMCYKILGEGKLVTQRELFY--------------KLLSDS 418 +R+ + N+AK F++ + + Y L + T R+L+Y K++S+ Sbjct: 67 RRNFLDLNEAKRFMQTVLMASIIYDALVSDEYPTIRDLYYRGKHSLLLKSIEGNKIVSEE 126 Query: 419 PKYFSCQRHVNQTIQDVVSLLRCTRQSLGIMASSRGALIGRLVLHEPEEEHIDCSILGPS 598 + Q+ + I D+ R+ + I++ +G ++G L + + ID S G Sbjct: 127 NTWDE-QKESDSVIVDIEVFTSLLREEMLILSKEKGKVVGNLRIRSGNDV-IDLSKTGHG 184 Query: 599 GHAITGDLNQLSRLNLSSDARYLILVEKDAIFQRLAEDRLYNQLPCILITAKGYPDIATR 778 +AI + + +++ DA ++++VEKDA+FQ+L + Q ILIT+ G PD ATR Sbjct: 185 AYAIEPTPDLIDFIDV--DAEFVLVVEKDAVFQQLHRAGFWKQYKSILITSAGQPDRATR 242 Query: 779 FILHRLSQTFPNMPIFALVDWNPAGLSILCTYKYGSISMGLESYRYAC-NVKWLGLRGDD 955 + RL++ +P++ L D +P G I ++ GSIS+ ES R A + K+LG+ D Sbjct: 243 RFVRRLNEEL-KLPVYILTDADPYGWYIFSVFRIGSISLSYESERLATPDAKFLGVSMGD 301 Query: 956 L-----------QLIPQSSFQELKPRDLQVAKSLLSSK-FLQDTHRAELTRMVETGTRAE 1099 + + ++ + K D++ A+ + + + F + E+ ++ + E Sbjct: 302 IFGNSRKKPYLSEAERKNYIIKAKDADIKRAEEIKNYEWFKTKAWQEEINTFLQRKAKLE 361 Query: 1100 VEALYCHGFDFLG-KFIARKIVQGDYI 1177 +EA+ G FL ++I KI DYI Sbjct: 362 IEAMASKGLKFLAFQYIPEKITNKDYI 388
>Q971T1:TOP6A_SULTO Type II DNA topoisomerase VI subunit A - Sulfolobus tokodaii| Length = 387 Score = 105 bits (261), Expect = 7e-22 Identities = 90/326 (27%), Positives = 155/326 (47%), Gaps = 27/326 (8%) Frame = +2 Query: 281 KRSLMRENDAKAFVRVWKVMEMCYKILGEGKLVTQRELFYK-----LLSD------SPKY 427 KRS N++K F++ + + Y L + T R+L+Y+ +L D Sbjct: 67 KRSFFDLNESKRFMQTVLMASIIYDALINDEYPTIRDLYYRGKHSIILKDPRGKTYEENT 126 Query: 428 FSCQRHVNQTIQDVVSLLRCTRQSLGIMASSRGALIGRLVLHEPEEEHIDCSILGPSGHA 607 + Q+ + I D+ R+ + I++ +G ++G + + + ID S +G ++ Sbjct: 127 WDEQKESDSVIMDIEVFTSLLREDMLILSKEKGKVVGDMRIRSGNDI-IDLSKMGHGAYS 185 Query: 608 I--TGDLNQLSRLNLSSDARYLILVEKDAIFQRLAEDRLYNQLPCILITAKGYPDIATRF 781 I T DL +N A ++++VEKDA+FQ+L + Q IL+T+ G PD ATR Sbjct: 186 IEPTPDLIDFVDIN----AEFVLVVEKDAVFQQLHRAGFWKQYKAILVTSAGQPDRATRR 241 Query: 782 ILHRLSQTFPNMPIFALVDWNPAGLSILCTYKYGSISMGLESYRYAC-NVKWLGLRGDDL 958 + RL++ +P++ L D +P G I ++ GSIS+ ES R A N K+LG+ D+ Sbjct: 242 FVRRLNEEL-KLPVYILTDADPYGWYIYSVFRIGSISLSYESERLATPNAKFLGVSMTDI 300 Query: 959 ----QLIPQSSFQE-----LKPRDLQVAKSLLSSK---FLQDTHRAELTRMVETGTRAEV 1102 P S QE +K +D + ++ F + E+ + ++ E+ Sbjct: 301 FGDSNKKPYLSEQERRNYIIKAKDADIKRATEIKNYQWFKTKAWQHEIEIFLNKKSKLEI 360 Query: 1103 EALYCHGFDFLG-KFIARKIVQGDYI 1177 EA+ G FL ++I KI DYI Sbjct: 361 EAMASKGLKFLAFQYIPEKIKSKDYI 386
>Q22236:SPO11_CAEEL Meiotic recombination protein spo-11 - Caenorhabditis elegans| Length = 425 Score = 102 bits (254), Expect = 4e-21 Identities = 78/285 (27%), Positives = 138/285 (48%), Gaps = 15/285 (5%) Frame = +2 Query: 338 MEMCYKILGEGKLVTQRELFYKLLSDSPKYFSCQRHVNQTIQDVVSLLRCTRQSLGIMAS 517 + Y +L K T+REL+Y + + Q++++ +I+ + LL +R +L I++ Sbjct: 99 LHQVYDLLENDKRSTKRELYY----EHKAVYGNQKYLDSSIKSICELLNESRANLNILSC 154 Query: 518 SRGALIGRLVLHEPEEEHIDCSILGPSGHAITGDLNQLSRLNLSSDARYLILVEKDAIFQ 697 RG + G + ID + + D S N+ S+A ++++VEKD FQ Sbjct: 155 GRGIIRGAITFLVENVGVIDARVQ----EVLITDALLFS--NIISEADFILVVEKDTTFQ 208 Query: 698 RLAEDRLYNQLPC-ILITAKGYPDIATRFILHRLSQTFPNMPIFALVDWNPAGLSILCTY 874 +L ++ P IL T+KGYPDIATR +L LS+ PI+ L D +P G+ I TY Sbjct: 209 KLMDENFQAMFPRGILATSKGYPDIATRNVLKMLSEK-RKFPIYGLFDADPHGIEIYLTY 267 Query: 875 KYGSISMGLESY-RYACNVKWLGLRGDDLQ--LIPQS-----------SFQELKPRDLQV 1012 KYG E + ++W+GL D I QS +++ PR +Q+ Sbjct: 268 KYGPTKEFAEGRGAFVPTIEWIGLFPTDFHRFTIDQSQCLPLVRTDFVKIEKMIPRSIQL 327 Query: 1013 AKSLLSSKFLQDTHRAELTRMVETGTRAEVEALYCHGFDFLGKFI 1147 + +++ EL M++ + E+E++ G +++ +F+ Sbjct: 328 GEIVVT---------RELDWMIQNKFKMELESINMCGQEYMARFL 363
>Q57815:TOP6A_METJA Type II DNA topoisomerase VI subunit A - Methanococcus jannaschii| Length = 369 Score = 97.1 bits (240), Expect = 2e-19 Identities = 81/294 (27%), Positives = 147/294 (50%), Gaps = 9/294 (3%) Frame = +2 Query: 281 KRSLMRENDAKAFVRVWKVMEMCYKILGEGKLVTQRELFYKLLSDSPKYFSCQRHVNQTI 460 K + N AK F + K++E ++L T RE +Y + F Q+ N I Sbjct: 64 KARTLTVNQAKIFAQTTKMLEFAKQLLETDDFSTLREAYYVSKNWGEARFDDQQASNNVI 123 Query: 461 QDVVSLLRCTRQSLGIMASSRGA-LIGRLVLHE--PEEEHI-DCSILGPSGHAITGDLNQ 628 +D+ + L R+ LG + G+ ++G L + E PE E + DC+ LG + I D+ Sbjct: 124 EDLEAALGVLREHLGFIPEEDGSSVVGPLKIIEETPEGELVVDCTKLGTGAYNIPNDV-- 181 Query: 629 LSRLNLSSDARYLILVEKDAIFQRLAEDRLYNQLPCILITAKGYPDIATRFILHRLSQTF 808 ++LNL +DA +++ +E +F RL +R +++ CIL++ KG P ATR + RL + Sbjct: 182 -TKLNLETDADFILAIETSGMFARLNAERFWDKHNCILVSLKGVPARATRRFIKRLHEEH 240 Query: 809 PNMPIFALVDWNPAG-LSILCTYKYGS-ISMGLESYRYACNVKWLGLRGDDLQLIPQSSF 982 ++P+ D +P G L+I T K GS ++ L + +G+ D+ + Sbjct: 241 -DLPVLVFTDGDPYGYLNIYRTLKVGSGKAIHLADKLSIPAARLIGVTPQDI-IDYDLPT 298 Query: 983 QELKPRDL-QVAKSLLSSKFLQD--THRAELTRMVETGTRAEVEALYCHGFDFL 1135 LK +D+ ++ L + F++ + L +M++ G RAE ++L +G ++ Sbjct: 299 HPLKEQDIKRIKDGLKNDDFVRSFPEWQKALKQMLDMGVRAEQQSLAKYGLKYV 352
>O59209:TOP6A_PYRHO Type II DNA topoisomerase VI subunit A - Pyrococcus horikoshii| Length = 382 Score = 89.7 bits (221), Expect = 3e-17 Identities = 79/314 (25%), Positives = 148/314 (47%), Gaps = 18/314 (5%) Frame = +2 Query: 281 KRSLMRENDAKAFVRVWKVMEMCYKILGEGKLVTQRELFYKLLSDSP----KYFSCQRHV 448 +R + A+ F++ +M +++ EGK + RE +Y P F Q Sbjct: 69 RRYFLNVAHARKFMQTLILMAYIKRLVSEGKHASLREAYYANKHTVPGTRENTFEDQSES 128 Query: 449 NQTIQDVVSLLRCTRQSLGIMASSRGALIGRLVLHEPEEEHIDCSILGPSGHAITGDLNQ 628 + I+D+ +L R+ + I A RG + G +V+ + E+E + S LG G A+ G + Sbjct: 129 DPIIEDLERMLGVLREEMHITADRRGYIYGDIVIKDGEDE-FNASKLGTGGWAVPGTVEH 187 Query: 629 LSRLNLSSDARYLILVEKDAIFQRLAEDRLYNQLPCILITAKGYPDIATRFILHRLSQTF 808 + ++ D Y+++VE A+ RL E++ + C+++ +G R ++HRL Sbjct: 188 IQFPEINVD--YVLVVETAAMADRLIEEKYPKRENCLIVATQGQASRGVRRLIHRLHYE- 244 Query: 809 PNMPIFALVDWNPAGLSILCTYKYGSISMGLESYRYAC-NVKWLGLRGDDL-QLIPQSSF 982 +PI D +P G I T K GSI++ S + A + K++G+ DD+ + ++ Sbjct: 245 EGLPIIVFTDGDPYGWYIYSTIKRGSINLAYLSEKLATPDAKFVGMTMDDIKEYNLENVT 304 Query: 983 QELK--PRD---------LQVAKSLLSSKFLQDTHRAELTRMVETGTRAEVEALYCHGFD 1129 ++LK P D ++ + L F + +L ++ G R E +AL + Sbjct: 305 EKLKGIPPDKKGGPTGDYKRLIEELNYPWFQDKEWQRQLKLALKWGVRIEQQALANKSLE 364 Query: 1130 FLGK-FIARKIVQG 1168 F+ K ++ KI +G Sbjct: 365 FVAKEYLPEKIREG 378
>Q9V134:TOP6A_PYRAB Type II DNA topoisomerase VI subunit A - Pyrococcus abyssi| Length = 382 Score = 88.6 bits (218), Expect = 6e-17 Identities = 79/314 (25%), Positives = 146/314 (46%), Gaps = 18/314 (5%) Frame = +2 Query: 281 KRSLMRENDAKAFVRVWKVMEMCYKILGEGKLVTQRELFYKLLSDSP----KYFSCQRHV 448 +R + A+ F + +M +++ EGK + RE +Y P F Q Sbjct: 69 RRYFLNVAHARKFTQTLILMAYIKRLVSEGKHASLREAYYANKHTIPGTRENTFEDQSES 128 Query: 449 NQTIQDVVSLLRCTRQSLGIMASSRGALIGRLVLHEPEEEHIDCSILGPSGHAITGDLNQ 628 + I+D+ +L R+ + I A RG + G +V+ + E+E + S LG G A+ G + Sbjct: 129 DPIIEDLERMLGVLREEMHITADRRGYIYGDIVIKDGEDE-FNASKLGTGGWAVPGTVEH 187 Query: 629 LSRLNLSSDARYLILVEKDAIFQRLAEDRLYNQLPCILITAKGYPDIATRFILHRLSQTF 808 + ++ D Y+++VE A+ RL E++ + C+++ +G R ++HRL Sbjct: 188 IQFPEVNVD--YVLVVETAAMADRLIEEKYPKKENCLIVATQGQASRGVRRLIHRLHYE- 244 Query: 809 PNMPIFALVDWNPAGLSILCTYKYGSISMGLESYRYAC-NVKWLGLRGDDL-QLIPQSSF 982 +PI D +P G I T K GSI++ S + A + K++G+ DD+ + + Sbjct: 245 EGLPIIVFTDGDPYGWYIYSTIKQGSINLAYLSEKLATPDAKFVGMTMDDIKEYNLEHVT 304 Query: 983 QELK--PRD---------LQVAKSLLSSKFLQDTHRAELTRMVETGTRAEVEALYCHGFD 1129 ++LK P D ++ + L F + +L ++ G R E +AL + Sbjct: 305 EKLKGIPPDKKGGPTGDYKRLIEELNYPWFQNKEWQRQLKLALKWGVRIEQQALANKSLE 364 Query: 1130 FLGK-FIARKIVQG 1168 F+ K ++ KI +G Sbjct: 365 FVAKEYLPEKIREG 378
>Q5JH82:TOP6A_PYRKO Type II DNA topoisomerase VI subunit A - Pyrococcus kodakaraensis| (Thermococcus kodakaraensis) Length = 385 Score = 86.7 bits (213), Expect = 2e-16 Identities = 76/317 (23%), Positives = 141/317 (44%), Gaps = 18/317 (5%) Frame = +2 Query: 281 KRSLMRENDAKAFVRVWKVMEMCYKILGEGKLVTQRELFYKLLSDSP----KYFSCQRHV 448 +R + A+ F++ +M +++ EGK + RE +Y P F Q Sbjct: 72 RRYFLNVAHARKFMQTLLIMAYVKRLVSEGKHASLREAYYANKHTIPGTRENTFEDQSES 131 Query: 449 NQTIQDVVSLLRCTRQSLGIMASSRGALIGRLVLHEPEEEHIDCSILGPSGHAITGDLNQ 628 + I+D+ + R+ + I A RG + G +V+ + E+E + S LG G A+ G + Sbjct: 132 DPIIEDLERMFGVLREEMHITADRRGYIYGDIVIRDGEDE-FNASRLGSGGWAVPGTVEH 190 Query: 629 LSRLNLSSDARYLILVEKDAIFQRLAEDRLYNQLPCILITAKGYPDIATRFILHRLSQTF 808 + ++ D Y ++VE A+ RL E++ + ++I +G R ++HRL Sbjct: 191 IQFPEINVD--YALVVETAAMADRLIEEKFPKRENALIIATQGQASRGVRRLIHRLHYE- 247 Query: 809 PNMPIFALVDWNPAGLSILCTYKYGSISMGLESYRYAC-NVKWLGLRGDDLQLIPQSSFQ 985 +PI D +P G I T K GSI++ S + A K++G+ DD++ + Sbjct: 248 EGLPIIVFTDGDPYGWYIYSTIKQGSINLAYLSDKLATPESKFVGMTMDDIKKYGLENVT 307 Query: 986 E----LKPRD--------LQVAKSLLSSKFLQDTHRAELTRMVETGTRAEVEALYCHGFD 1129 E + P ++ + + F + +L ++ G R E +AL + Sbjct: 308 EKLKGIPPNKKGGPTGDYKRILEEMNYPWFQNKEWQRQLQLALKWGVRIEQQALANKSLE 367 Query: 1130 FLGK-FIARKIVQGDYI 1177 F+ K ++ KI GD + Sbjct: 368 FVAKEYLPEKINNGDLL 384
>Q8U0K9:TOP6A_PYRFU Type II DNA topoisomerase VI subunit A - Pyrococcus furiosus| Length = 382 Score = 85.5 bits (210), Expect = 5e-16 Identities = 79/314 (25%), Positives = 146/314 (46%), Gaps = 18/314 (5%) Frame = +2 Query: 281 KRSLMRENDAKAFVRVWKVMEMCYKILGEGKLVTQRELFYKLLSDSP----KYFSCQRHV 448 +R + A+ F++ +M +++ EGK + RE +Y P F Q Sbjct: 69 RRYFLNVAHARKFMQTLILMAYVKRLVSEGKHASLREAYYANKHTIPGTHENTFEDQSES 128 Query: 449 NQTIQDVVSLLRCTRQSLGIMASSRGALIGRLVLHEPEEEHIDCSILGPSGHAITGDLNQ 628 + I+D+ +L R+ + I A RG + G +V+ + E+E + S LG G A+ G + Sbjct: 129 DPIIEDLERMLGVLREEMHITADRRGYVYGDIVIKDGEDE-FNASKLGMGGWAVPGTVEH 187 Query: 629 LSRLNLSSDARYLILVEKDAIFQRLAEDRLYNQLPCILITAKGYPDIATRFILHRLSQTF 808 + ++ D Y+++VE A+ RL E++ + ++I +G R ++HRL Sbjct: 188 IQFPEINVD--YVLVVETAAMADRLIEEKYPKRERALIIATQGQASRGVRRLIHRLHYE- 244 Query: 809 PNMPIFALVDWNPAGLSILCTYKYGSISMGLESYRYAC-NVKWLGLRGDDLQLIP-QSSF 982 +PI D +P G I T K GSI++ S + A + K++G+ DD++ + Sbjct: 245 EGLPIIVFTDGDPYGWYIYSTIKQGSINLAYLSEKLATPDAKFVGMTMDDIKEYGLEHVT 304 Query: 983 QELK--PRD---------LQVAKSLLSSKFLQDTHRAELTRMVETGTRAEVEALYCHGFD 1129 ++LK P D ++ + L F + +L ++ G R E +AL + Sbjct: 305 EKLKGIPPDKKGGPTGDYKRLIEELNYPWFQNKEWQRQLKLALKWGVRIEQQALANKSLE 364 Query: 1130 FLGK-FIARKIVQG 1168 F+ K ++ KI +G Sbjct: 365 FVAKEYLPEKIREG 378
>O27089:TOP6A_METTH Type II DNA topoisomerase VI subunit A - Methanobacterium| thermoautotrophicum Length = 353 Score = 85.1 bits (209), Expect = 7e-16 Identities = 73/288 (25%), Positives = 139/288 (48%), Gaps = 4/288 (1%) Frame = +2 Query: 284 RSLMRENDAKAFVRVWKVMEMCYKILGEGKLVTQRELFYKLLSDSPKY-FSCQRHVNQTI 460 RS+ K ++ C ++ K T REL+Y +S+ + F+ Q+ N Sbjct: 58 RSMGNVKQIKKIGQMLYTANFCKDLVAREKTATLRELYY--ISEGWEVDFADQQESNIVG 115 Query: 461 QDVVSLLRCTRQSLGIMASSRGALI-GRLVLHEPEEEHIDCSILGPSGHAITGDLNQLSR 637 +D+ L TR+ LG+M GA + G L + E + E ID G SG+ I+ ++++ Sbjct: 116 EDLEVTLGMTREELGLMPEEDGASVYGALTVREGDIE-IDALRSGKSGYNISPTIDEVEF 174 Query: 638 LNLSSDARYLILVEKDAIFQRLAEDRLYNQLPCILITAKGYPDIATRFILHRLSQTFPNM 817 ++ D +I VE +F RL +++ Y + +++ KG ATR + R+++ N+ Sbjct: 175 VD--HDVERVIAVETMGMFHRLVQEKAYKKFDALIVGLKGQAARATRRFIKRVNEEL-NL 231 Query: 818 PIFALVDWNPAGLSILCTYKYGSISMGLESYRYAC-NVKWLGLRGDDLQLIPQSSFQELK 994 P++ D +P G I GS + +++ A + K+LG+ D+ + LK Sbjct: 232 PVYICNDGDPWGFHIAMVIISGSAKLAHVNHQLATPDAKFLGVTASDI-INYDLPTDPLK 290 Query: 995 PRDLQVAKSLLSS-KFLQDTHRAELTRMVETGTRAEVEALYCHGFDFL 1135 D+ K LL ++ D + E+ +M+ G +AE ++ +G +++ Sbjct: 291 DVDVVRLKELLQDPRYRGDFWKTEIKKMLTIGKKAEQQSFSKYGLEYV 338
>O29322:TOP6A_ARCFU Type II DNA topoisomerase VI subunit A - Archaeoglobus fulgidus| Length = 360 Score = 76.3 bits (186), Expect = 3e-13 Identities = 72/289 (24%), Positives = 134/289 (46%), Gaps = 13/289 (4%) Frame = +2 Query: 308 AKAFVRVWKVMEMCYKI------LGEGKLVTQRELFYKLLSDSPKYFSCQRHVNQTIQDV 469 AK +++++M Y I L K T REL+Y F Q ++ ++D+ Sbjct: 61 AKTVKGAYRILKMTYVIGFLKEQLNLNKSSTLRELYYISEGWGAAKFEEQPESDRLVEDL 120 Query: 470 VSLLRCTRQSLGIMASSRGA-LIGRLVLHEPEEE---HIDCSI-LGPSGHAITGDLNQLS 634 L R+ I GA +IG L + E I C +G G+ I +++++ Sbjct: 121 EILTNFQREHFHIRPEEDGATVIGPLRVREETRRGVREIHCQDDVGEGGYQIPVNVDKIE 180 Query: 635 RLNLSSDARYLILVEKDAIFQRLAEDRLYNQLPCILITAKGYPDIATRFILHRLSQTFPN 814 ++ DA+++I +E + RL E+ + I++ KG P +TR +L RL+ T N Sbjct: 181 FVD--HDAKFVIAIETGGMRDRLVENGFDEKYDAIIVHLKGQPARSTRRLLRRLN-TELN 237 Query: 815 MPIFALVDWNPAGLSILCTYKYGSI-SMGLESYRYACNVKWLGLRGDDLQLIPQSSFQEL 991 +P+ D +P I + YGSI S L Y +++G+R D+ + +L Sbjct: 238 LPVVVFTDGDPWSYRIFASVAYGSIKSAHLSEYLATPAAQFVGIRPTDIVKYDLPA-DKL 296 Query: 992 KPRDLQVAKSLLSS-KFLQDTHRAELTRMVETGTRAEVEALYCHGFDFL 1135 D++ ++L+ +F + + E+ +E ++E +AL +G D++ Sbjct: 297 TEEDIKALNAILTDPRFDSEFWKKEVNLQLEINKKSEQQALAKYGLDYV 345
>Q5V4R4:TOP6A_HALMA Type II DNA topoisomerase VI subunit A - Haloarcula marismortui| (Halobacterium marismortui) Length = 368 Score = 72.4 bits (176), Expect = 5e-12 Identities = 74/293 (25%), Positives = 133/293 (45%), Gaps = 17/293 (5%) Frame = +2 Query: 308 AKAFVRVWKVMEMCYKI------LGEGKLVTQRELFYKLLSDS----PKYFSCQRHVNQT 457 AK K+++ Y I L E + T REL+Y LS+S F+ Q N Sbjct: 67 AKTISGAEKILKAVYTIDFLSQQLEEDRSSTLRELYY--LSESWDLDEAQFNTQDESNNL 124 Query: 458 IQDVVSLLRCTRQSLGIMASSRGA-LIGRLVLHEPE---EEHIDCSI-LGPSGHAITGDL 622 I+D+ + R+ + GA ++G L+L E + I C +G G+ I + Sbjct: 125 IEDLEIVSDVKREDFHMRPEESGAKVMGPLLLREQTNRGDREIHCQDDVGQGGYQIPNNP 184 Query: 623 NQLSRLNLSSDARYLILVEKDAIFQRLAEDRLYNQLPCILITAKGYPDIATRFILHRLSQ 802 + + L+ +DA++++ VE + RL E+ ++ +++ G P ATR ++ RL Sbjct: 185 DTIEFLD--NDAKFVLCVETGGMRDRLVENGFDDEYDALVVHLGGQPARATRRLIKRLHD 242 Query: 803 TFPNMPIFALVDWNPAGLSILCTYKYGSI-SMGLESYRYACNVKWLGLRGDDLQLIPQSS 979 ++P+ D +P I + YGSI S L Y +++G+R +D+ + + Sbjct: 243 EL-DLPVTVFTDGDPWSYRIFGSVSYGSIKSAHLSEYLATPEAQFIGIRPEDI-VEYELP 300 Query: 980 FQELKPRDLQVAKSLLSS-KFLQDTHRAELTRMVETGTRAEVEALYCHGFDFL 1135 L D+ +S L +F D ++ ++ +AE +AL G DF+ Sbjct: 301 TDPLSDSDVNALESELEDPRFQTDFWEEQIELQLDINKKAEQQALASRGLDFV 353
>Q9HR32:TOP6A_HALSA Type II DNA topoisomerase VI subunit A - Halobacterium salinarium| (Halobacterium halobium) Length = 366 Score = 64.7 bits (156), Expect = 1e-09 Identities = 70/293 (23%), Positives = 129/293 (44%), Gaps = 9/293 (3%) Frame = +2 Query: 284 RSLMRENDAKAFVRVWKVMEMCYKILGEGKLVTQRELFYKLLS--DSPKYFSCQRHVNQT 457 RS A+ ++ ++ + L EG+ T REL+Y S ++ F+ Q ++ Sbjct: 63 RSANSVRGARKLLKSVYTVDFLAQQLDEGRSSTLRELYYLSESWDEAEAQFNDQSESDKL 122 Query: 458 IQDVVSLLRCTRQSLGIMASSRGA-LIGRLVLHEPE---EEHIDCSI-LGPSGHAITGDL 622 ++D+ + R+ + GA ++G L L E + I C +G G+ I + Sbjct: 123 VEDLEIVSGVKREDFHMRPEESGAKVMGPLRLREQTRRGDREIHCQEDVGQGGYQIPNNP 182 Query: 623 NQLSRLNLSSDARYLILVEKDAIFQRLAEDRLYNQLPCILITAKGYPDIATRFILHRLSQ 802 + + L+ +DA +++ VE + RL E+ + I++ G P ATR + RL Sbjct: 183 DTIDFLD--TDADFVLCVETGGMRDRLVENGFDDDYNAIVVHLGGQPARATRRLTKRLHD 240 Query: 803 TFPNMPIFALVDWNPAGLSILCTYKYGSI-SMGLESYRYACNVKWLGLRGDDLQLIPQSS 979 ++P+ D +P I + YGSI S L Y +++G+R D+ + Sbjct: 241 EL-DLPVTVFTDGDPWSYRIYGSVAYGSIKSAHLSEYLATPQAQFIGIRPQDI-VDYDLP 298 Query: 980 FQELKPRDLQVAKSLLSS-KFLQDTHRAELTRMVETGTRAEVEALYCHGFDFL 1135 L D+ +S L +F D ++ ++ +AE +AL G DF+ Sbjct: 299 TDPLSDSDVNALESELEDPRFQSDFWTEQIGLQLDIDKKAEQQALASRGLDFV 351
>P23179:SPO11_YEAST Meiosis-specific protein SPO11 - Saccharomyces cerevisiae (Baker's| yeast) Length = 398 Score = 50.8 bits (120), Expect = 1e-05 Identities = 59/243 (24%), Positives = 106/243 (43%), Gaps = 21/243 (8%) Frame = +2 Query: 368 GKLVTQRELFYKLLSDSPKYFSCQRHVNQTIQDVV--SLLRCTRQSLGIMASSRGALIGR 541 GK T R++FY + + F Q +V Q + DV+ + R+SL I+ + +G + Sbjct: 125 GKNTTVRDIFYS----NVELFQRQANVVQWL-DVIRFNFKLSPRKSLNIIPAQKGLVYSP 179 Query: 542 L-------VLHEPEEEHIDCSILGPSGHAITGDLNQLSRLNLSSDARY-LILVEKDAIFQ 697 +L E + + P + + + L + + +++VEK+A+F Sbjct: 180 FPIDIYDNILTCENEPKMQKQTIFPGKPCLIPFFQDDAVIKLGTTSMCNIVIVEKEAVFT 239 Query: 698 RLAEDRLYNQLPCILITAKGYPDIATRFILHRLSQTFPNM--PIFALVDWNPAGLSILCT 871 +L + +LIT KG+PD TR L +L Q + D +P G+SI Sbjct: 240 KLVNNYHKLSTNTMLITGKGFPDFLTRLFLKKLEQYCSKLISDCSIFTDADPYGISIALN 299 Query: 872 YKYGSISMGLESYRYACNV-KWLGLRGDDLQLIPQSS--------FQELKPRDLQVAKSL 1024 Y + + E Y C + + G+R Q++ Q++ L RD +AK+L Sbjct: 300 YTHSN-----ERNAYICTMANYKGIR--ITQVLAQNNEVHNKSIQLLSLNQRDYSLAKNL 352 Query: 1025 LSS 1033 ++S Sbjct: 353 IAS 355
>Q6PJ61:FBX46_HUMAN F-box only protein 46 - Homo sapiens (Human)| Length = 646 Score = 33.5 bits (75), Expect = 2.4 Identities = 26/81 (32%), Positives = 32/81 (39%), Gaps = 12/81 (14%) Frame = -2 Query: 314 PWHHFLSLATS----CRRRRTDTPMKHHSASRCAGC-------SW-WTCGKSGGGRRWTE 171 P+HH L S CRR +TP GC +W C GGGR E Sbjct: 551 PYHHDLPYGRSYWMCCRRADRETP----------GCRLGLHDNNWVLPCNGPGGGRAGRE 600 Query: 170 KRETKARRGN*APPPRSLPEP 108 + + RG +PP LP P Sbjct: 601 EGRSTRGRGGESPPRPPLPSP 621
>Q83AC6:OSTA_COXBU LPS-assembly protein precursor - Coxiella burnetii| Length = 870 Score = 31.6 bits (70), Expect = 9.1 Identities = 20/61 (32%), Positives = 32/61 (52%) Frame = -3 Query: 1180 SNVITLHNLPGDELPQEIKTMAIESFDLSTRARLDHPCQLRSVRVLKKLR*QQAFGDLQI 1001 S I L+ LP D++ Q+ + + F S A +HP + V LKK++ Q+AF + Sbjct: 337 SGTIYLNYLPNDKVFQQFRETTLSKFPPSVLA--EHPVFIPYVDKLKKMKNQRAFFSMNE 394 Query: 1000 T 998 T Sbjct: 395 T 395 Database: uniprot_sprot.fasta.out Posted date: Jul 19, 2007 5:58 PM Number of letters in database: 100,686,439 Number of sequences in database: 274,295 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 274295 Number of Hits to DB: 269,256,783 Number of extensions: 5957743 Number of successful extensions: 13921 Number of sequences better than 10.0: 19 Number of HSP's gapped: 13892 Number of HSP's successfully gapped: 19 Length of query: 501 Length of database: 100,686,439 Length adjustment: 117 Effective length of query: 384 Effective length of database: 68,593,924 Effective search space: 26340066816 Effective search space used: 26340066816 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
