ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf29j02 |
|---|---|
| Clone Library Name | barley_pub |
>gb|BT009565.1| Triticum aestivum clone wre1n.pk0011.b10:fis, full insert mRNA sequence Length = 835 Score = 1110 bits (560), Expect = 0.0 Identities = 608/624 (97%) Strand = Plus / Plus Query: 560 gaggaagaacacatcgattgttccattctcggaccttctgggcatgccattactggggat 619 |||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 12 gaggaagaacacattgattgttccattcttggaccttctgggcatgccattactggggat 71 Query: 620 ctgaaccaattgagcagattaaatttgtcttcagatgcccgttatctcattctagtggag 679 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 72 ctgaaccaattgagcagattaaatttgtcttcagatgcccgttatctcattctagtggag 131 Query: 680 aaggatgccatatttcagaggctggctgaagaccgcttatataatcagcttccatgtatc 739 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 132 aaggatgccatatttcagaggctggctgaagaccgcttatataatcagcttccatgtatc 191 Query: 740 ctgatcactgcaaaaggatatcctgatatcgcaacgaggtttatcttgcatcgactgagc 799 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 192 ctgatcactgcaaaaggatatcctgatatcgccacgaggtttatcttgcatcgactgagc 251 Query: 800 cagacttttccaaatatgccaatatttgcattagtggactggaaccctgcagggctctct 859 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 252 cagacttttccaaatatgccaatatttgcattagtggactggaaccctgcagggctctct 311 Query: 860 atactgtgtacttacaaatatggaagcatatcaatgggcttggaatcatacagatacgct 919 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 312 atactgtgtacttacaaatatggaagcatatcaatgggcttggaatcatacagatacgct 371 Query: 920 tgcaatgtaaaatggcttggcctaagaggagatgatctgcagcttatccctcagagttca 979 ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || Sbjct: 372 tgcaatgtaaaatggcttggcctaagaggagatgatctgcaacttatccctcagagtgca 431 Query: 980 ttccaagagttgaaacctcgtgatttgcaggtcgccaaaagcttgctgtcatctaagttt 1039 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 432 ttccaagagttgaaacctcgtgatttgcagatcgccaaaagcttgctgtcatctaagttt 491 Query: 1040 cttcaggacacgcacagagcggagttgacacggatggtcgagacgggcacgcgtgctgag 1099 || |||||||||||||| ||||||||||| |||||||| ||||| ||||| ||||||||| Sbjct: 492 ctacaggacacgcacagggcggagttgacgcggatggtggagacaggcactcgtgctgag 551 Query: 1100 gtcgaagctctctattgccatggttttgatttcctggggaagttcatcgccaggaagatt 1159 ||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| Sbjct: 552 atcgaagctctctactgccatggatttgatttcctggggaagttcatcgccaggaagatt 611 Query: 1160 gtgcagggtgattacatttgacag 1183 ||||||||||| |||||||||||| Sbjct: 612 gtgcagggtgactacatttgacag 635
>emb|AJ605583.1| Oryza sativa (indica cultivar-group) mRNA for topoisomerase 6 subunit A (top6a gene) Length = 1158 Score = 735 bits (371), Expect = 0.0 Identities = 788/927 (85%) Strand = Plus / Plus Query: 254 tcggtgtatctgtcctacgccttctgcaagaggtcgctaatgagagaaaatgatgccaag 313 |||||||| || |||||||||| ||||||||| || || | ||| | || || |||||| Sbjct: 232 tcggtgtacctctcctacgcctcctgcaagagatccctcacgagggccaacgacgccaag 291 Query: 314 gcattcgtcagagtatggaaagtcatggagatgtgctacaagatcttgggcgaagggaag 373 |||||||| ||||| ||||| || |||||||||||||||||||| ||||| || |||||| Sbjct: 292 gcattcgttagagtgtggaaggtgatggagatgtgctacaagattttgggggaggggaag 351 Query: 374 cttgtcacccagcgggagttgttctacaaactactgtcggactcacccaagtacttcagc 433 || ||||||| | ||||| ||||||||| || || || || || |||| ||||||| | Sbjct: 352 ctggtcaccctgagggagctgttctacacgctcctctctgaatcgcccacctacttcacc 411 Query: 434 tgtcagcgtcatgtgaatcaaaccatccaagatgttgtttcattgctccgttgcacaagg 493 || ||||| ||||| || || || | |||||||| || || |||||||| || || ||| Sbjct: 412 tgccagcggcatgtcaaccagactgttcaagatgtcgtctcgttgctccggtgtacgagg 471 Query: 494 cagagtttaggaatcatggcatcaagtagaggggcactgattggacgacttgtgttgcat 553 ||||| | || |||||||| || |||||||||||||||||||| || ||||||||||| Sbjct: 472 cagagcctggggatcatggcgtcgagtagaggggcactgattgggcggcttgtgttgcag 531 Query: 554 gaaccagaggaagaacacatcgattgttccattctcggaccttctgggcatgccattact 613 | || ||||||||||| | || || |||||||| ||||||||||||||||| || ||| Sbjct: 532 gggccggaggaagaacatgttgactgctccattcttggaccttctgggcatgcgatcact 591 Query: 614 ggggatctgaaccaattgagcagattaaatttgtcttcagatgcccgttatctcattcta 673 || ||||| || |||||||| ||||| || ||||||||||| || ||| ||||| || Sbjct: 592 ggagatctcaatgtattgagcaaattaatcttttcttcagatgcgcggtatatcattgta 651 Query: 674 gtggagaaggatgccatatttcagaggctggctgaagaccgcttatataatcagcttcca 733 |||||||||||||||||||||||||||||||||||||| ||| |||||| ||| |||||| Sbjct: 652 gtggagaaggatgccatatttcagaggctggctgaagatcgcatatatagtcaccttcca 711 Query: 734 tgtatcctgatcactgcaaaaggatatcctgatatcgcaacgaggtttatcttgcatcga 793 ||||||||||| ||||||||||||||||||||| | || || |||||||||||||||||| Sbjct: 712 tgtatcctgattactgcaaaaggatatcctgatcttgccacaaggtttatcttgcatcga 771 Query: 794 ctgagccagacttttccaaatatgccaatatttgcattagtggactggaaccctgcaggg 853 ||||||||||||| ||| || ||||| || || |||||||| ||||||||||| |||||| Sbjct: 772 ctgagccagacttatccgaacatgccgattttcgcattagtagactggaacccagcaggg 831 Query: 854 ctctctatactgtgtacttacaaatatggaagcatatcaatgggcttggaatcatacaga 913 || ||||||| || |||||||| ||||||||||| |||||||| ||||||||||||||| Sbjct: 832 cttgctatactatgcacttacaagtatggaagcatttcaatgggtttggaatcatacaga 891 Query: 914 tacgcttgcaatgtaaaatggcttggcctaagaggagatgatctgcagcttatccctcag 973 || |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 892 tatgcttgcaatgtaaaatggcttggcctaagaggagatgatctgcagcttatacctcag 951 Query: 974 agttcattccaagagttgaaacctcgtgatttgcaggtcgccaaaagcttgctgtcatct 1033 || ||| ||||| |||| || |||||| ||||| | ||||||||||||||||||||| Sbjct: 952 agcgcatatcaagaactgaagccacgtgatctgcagattgccaaaagcttgctgtcatct 1011 Query: 1034 aagtttcttcaggacacgcacagagcggagttgacacggatggtcgagacgggcacgcgt 1093 |||||||| ||||||| ||||||||| ||| |||||| |||| | ||||| |||| |||| Sbjct: 1012 aagtttctgcaggacaagcacagagctgagctgacactgatgttggagacaggcaagcgt 1071 Query: 1094 gctgaggtcgaagctctctattgccatggttttgatttcctggggaagttcatcgccagg 1153 || ||| ||||||||||||| | ||||| ||||||||||||||||| | | || ||| Sbjct: 1072 gccgagatcgaagctctctactcacatgggtttgatttcctggggaaatatgttgcaagg 1131 Query: 1154 aagattgtgcagggtgattacatttga 1180 |||||||| |||||||||||||||||| Sbjct: 1132 aagattgtacagggtgattacatttga 1158 Score = 99.6 bits (50), Expect = 3e-17 Identities = 86/98 (87%) Strand = Plus / Plus Query: 53 tcgctcttcggtgcggactgccgcctctgctcagccgacgtgctctcgccccccgaggtt 112 ||||||||||| || ||| ||||||||||||| |||||| | ||| | ||| ||||||| Sbjct: 28 tcgctcttcggcgccgaccgccgcctctgctccgccgacatcctccctcccgccgaggtg 87 Query: 113 cgggcaaggatcgaggtggcggtgctcaatttcctcgc 150 ||||| ||||||||||||||||||||||| |||||||| Sbjct: 88 cgggcgaggatcgaggtggcggtgctcaacttcctcgc 125
>ref|NM_001067562.1| Oryza sativa (japonica cultivar-group) Os08g0156900 (Os08g0156900) mRNA, complete cds Length = 1667 Score = 729 bits (368), Expect = 0.0 Identities = 791/932 (84%) Strand = Plus / Plus Query: 254 tcggtgtatctgtcctacgccttctgcaagaggtcgctaatgagagaaaatgatgccaag 313 |||||||| || |||||||||| ||||||||| || || | ||| | || || |||||| Sbjct: 306 tcggtgtacctctcctacgcctcctgcaagagatccctcacgagggccaacgacgccaag 365 Query: 314 gcattcgtcagagtatggaaagtcatggagatgtgctacaagatcttgggcgaagggaag 373 |||||||| ||||| ||||| || |||||||||||||||||||| ||||| || |||||| Sbjct: 366 gcattcgttagagtgtggaaggtgatggagatgtgctacaagattttgggggaggggaag 425 Query: 374 cttgtcacccagcgggagttgttctacaaactactgtcggactcacccaagtacttcagc 433 || ||||||| | ||||| ||||||||| || || || || || |||| ||||||| | Sbjct: 426 ctggtcaccctgagggagctgttctacacgctcctctctgaatcgcccacctacttcacc 485 Query: 434 tgtcagcgtcatgtgaatcaaaccatccaagatgttgtttcattgctccgttgcacaagg 493 || ||||| ||||| || || || | |||||||| || || |||||||| || || ||| Sbjct: 486 tgccagcggcatgtcaaccagactgttcaagatgtcgtctcgttgctccggtgtacgagg 545 Query: 494 cagagtttaggaatcatggcatcaagtagaggggcactgattggacgacttgtgttgcat 553 ||||| | || |||||||| || |||||||||||||||||||| || |||||| |||| Sbjct: 546 cagagcctggggatcatggcgtcgagtagaggggcactgattgggcggcttgtggtgcag 605 Query: 554 gaaccagaggaagaacacatcgattgttccattctcggaccttctgggcatgccattact 613 | || ||||||||||| | || || |||||||| ||||||||||||||||| || ||| Sbjct: 606 gggccggaggaagaacatgttgactgctccattcttggaccttctgggcatgcgatcact 665 Query: 614 ggggatctgaaccaattgagcagattaaatttgtcttcagatgcccgttatctcattcta 673 || ||||| || |||||||| ||||| || ||||||||||| || ||| ||||| || Sbjct: 666 ggagatctcaatgtattgagcaaattaatcttttcttcagatgcgcggtatatcattgta 725 Query: 674 gtggagaaggatgccatatttcagaggctggctgaagaccgcttatataatcagcttcca 733 |||||||||||||||||||||||||||||||||||||| ||| |||||| ||| ||||| Sbjct: 726 gtggagaaggatgccatatttcagaggctggctgaagatcgcatatatagtcaccttccg 785 Query: 734 tgtatcctgatcactgcaaaaggatatcctgatatcgcaacgaggtttatcttgcatcga 793 ||||||||||| ||||||||||||||||||||| | || || |||||||||||||||||| Sbjct: 786 tgtatcctgattactgcaaaaggatatcctgatcttgccacaaggtttatcttgcatcga 845 Query: 794 ctgagccagacttttccaaatatgccaatatttgcattagtggactggaaccctgcaggg 853 ||||||||||||| ||| || ||||| || || |||||||| ||||||||||| |||||| Sbjct: 846 ctgagccagacttatccgaacatgccgattttcgcattagtagactggaacccagcaggg 905 Query: 854 ctctctatactgtgtacttacaaatatggaagcatatcaatgggcttggaatcatacaga 913 || ||||||| || |||||||| ||||||||||| |||||||| ||||||||||||||| Sbjct: 906 cttgctatactatgcacttacaagtatggaagcatttcaatgggtttggaatcatacaga 965 Query: 914 tacgcttgcaatgtaaaatggcttggcctaagaggagatgatctgcagcttatccctcag 973 || |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 966 tatgcttgcaatgtaaaatggcttggcctaagaggagatgatctgcagcttatacctcag 1025 Query: 974 agttcattccaagagttgaaacctcgtgatttgcaggtcgccaaaagcttgctgtcatct 1033 || ||| ||||| |||| || |||||| ||||| | ||||||||||||||||||||| Sbjct: 1026 agcgcatatcaagaactgaagccacgtgatctgcagattgccaaaagcttgctgtcatct 1085 Query: 1034 aagtttcttcaggacacgcacagagcggagttgacacggatggtcgagacgggcacgcgt 1093 |||||||| ||||||| ||||||||| ||| |||||| |||| | ||||| |||| |||| Sbjct: 1086 aagtttctgcaggacaagcacagagctgagctgacactgatgttggagacaggcaagcgt 1145 Query: 1094 gctgaggtcgaagctctctattgccatggttttgatttcctggggaagttcatcgccagg 1153 || ||| ||||||||||||| | ||||| ||||||||||||||||| | | || ||| Sbjct: 1146 gccgagatcgaagctctctactcacatgggtttgatttcctggggaaatatgttgcaagg 1205 Query: 1154 aagattgtgcagggtgattacatttgacagtg 1185 |||||||| ||||||||||||||||||||||| Sbjct: 1206 aagattgtacagggtgattacatttgacagtg 1237 Score = 99.6 bits (50), Expect = 3e-17 Identities = 86/98 (87%) Strand = Plus / Plus Query: 53 tcgctcttcggtgcggactgccgcctctgctcagccgacgtgctctcgccccccgaggtt 112 ||||||||||| || ||| ||||||||||||| |||||| | ||| | ||| ||||||| Sbjct: 102 tcgctcttcggcgccgaccgccgcctctgctccgccgacatcctccctcccgccgaggtg 161 Query: 113 cgggcaaggatcgaggtggcggtgctcaatttcctcgc 150 ||||| ||||||||||||||||||||||| |||||||| Sbjct: 162 cgggcgaggatcgaggtggcggtgctcaacttcctcgc 199
>dbj|AK106397.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-102-F09, full insert sequence Length = 1382 Score = 729 bits (368), Expect = 0.0 Identities = 791/932 (84%) Strand = Plus / Plus Query: 254 tcggtgtatctgtcctacgccttctgcaagaggtcgctaatgagagaaaatgatgccaag 313 |||||||| || |||||||||| ||||||||| || || | ||| | || || |||||| Sbjct: 227 tcggtgtacctctcctacgcctcctgcaagagatccctcacgagggccaacgacgccaag 286 Query: 314 gcattcgtcagagtatggaaagtcatggagatgtgctacaagatcttgggcgaagggaag 373 |||||||| ||||| ||||| || |||||||||||||||||||| ||||| || |||||| Sbjct: 287 gcattcgttagagtgtggaaggtgatggagatgtgctacaagattttgggggaggggaag 346 Query: 374 cttgtcacccagcgggagttgttctacaaactactgtcggactcacccaagtacttcagc 433 || ||||||| | ||||| ||||||||| || || || || || |||| ||||||| | Sbjct: 347 ctggtcaccctgagggagctgttctacacgctcctctctgaatcgcccacctacttcacc 406 Query: 434 tgtcagcgtcatgtgaatcaaaccatccaagatgttgtttcattgctccgttgcacaagg 493 || ||||| ||||| || || || | |||||||| || || |||||||| || || ||| Sbjct: 407 tgccagcggcatgtcaaccagactgttcaagatgtcgtctcgttgctccggtgtacgagg 466 Query: 494 cagagtttaggaatcatggcatcaagtagaggggcactgattggacgacttgtgttgcat 553 ||||| | || |||||||| || |||||||||||||||||||| || |||||| |||| Sbjct: 467 cagagcctggggatcatggcgtcgagtagaggggcactgattgggcggcttgtggtgcag 526 Query: 554 gaaccagaggaagaacacatcgattgttccattctcggaccttctgggcatgccattact 613 | || ||||||||||| | || || |||||||| ||||||||||||||||| || ||| Sbjct: 527 gggccggaggaagaacatgttgactgctccattcttggaccttctgggcatgcgatcact 586 Query: 614 ggggatctgaaccaattgagcagattaaatttgtcttcagatgcccgttatctcattcta 673 || ||||| || |||||||| ||||| || ||||||||||| || ||| ||||| || Sbjct: 587 ggagatctcaatgtattgagcaaattaatcttttcttcagatgcgcggtatatcattgta 646 Query: 674 gtggagaaggatgccatatttcagaggctggctgaagaccgcttatataatcagcttcca 733 |||||||||||||||||||||||||||||||||||||| ||| |||||| ||| ||||| Sbjct: 647 gtggagaaggatgccatatttcagaggctggctgaagatcgcatatatagtcaccttccg 706 Query: 734 tgtatcctgatcactgcaaaaggatatcctgatatcgcaacgaggtttatcttgcatcga 793 ||||||||||| ||||||||||||||||||||| | || || |||||||||||||||||| Sbjct: 707 tgtatcctgattactgcaaaaggatatcctgatcttgccacaaggtttatcttgcatcga 766 Query: 794 ctgagccagacttttccaaatatgccaatatttgcattagtggactggaaccctgcaggg 853 ||||||||||||| ||| || ||||| || || |||||||| ||||||||||| |||||| Sbjct: 767 ctgagccagacttatccgaacatgccgattttcgcattagtagactggaacccagcaggg 826 Query: 854 ctctctatactgtgtacttacaaatatggaagcatatcaatgggcttggaatcatacaga 913 || ||||||| || |||||||| ||||||||||| |||||||| ||||||||||||||| Sbjct: 827 cttgctatactatgcacttacaagtatggaagcatttcaatgggtttggaatcatacaga 886 Query: 914 tacgcttgcaatgtaaaatggcttggcctaagaggagatgatctgcagcttatccctcag 973 || |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 887 tatgcttgcaatgtaaaatggcttggcctaagaggagatgatctgcagcttatacctcag 946 Query: 974 agttcattccaagagttgaaacctcgtgatttgcaggtcgccaaaagcttgctgtcatct 1033 || ||| ||||| |||| || |||||| ||||| | ||||||||||||||||||||| Sbjct: 947 agcgcatatcaagaactgaagccacgtgatctgcagattgccaaaagcttgctgtcatct 1006 Query: 1034 aagtttcttcaggacacgcacagagcggagttgacacggatggtcgagacgggcacgcgt 1093 |||||||| ||||||| ||||||||| ||| |||||| |||| | ||||| |||| |||| Sbjct: 1007 aagtttctgcaggacaagcacagagctgagctgacactgatgttggagacaggcaagcgt 1066 Query: 1094 gctgaggtcgaagctctctattgccatggttttgatttcctggggaagttcatcgccagg 1153 || ||| ||||||||||||| | ||||| ||||||||||||||||| | | || ||| Sbjct: 1067 gccgagatcgaagctctctactcacatgggtttgatttcctggggaaatatgttgcaagg 1126 Query: 1154 aagattgtgcagggtgattacatttgacagtg 1185 |||||||| ||||||||||||||||||||||| Sbjct: 1127 aagattgtacagggtgattacatttgacagtg 1158 Score = 46.1 bits (23), Expect = 0.37 Identities = 35/39 (89%) Strand = Plus / Plus Query: 53 tcgctcttcggtgcggactgccgcctctgctcagccgac 91 ||||||||||| || ||| ||||||||||||| |||||| Sbjct: 89 tcgctcttcggcgccgaccgccgcctctgctccgccgac 127
>dbj|AK073344.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033028J03, full insert sequence Length = 1669 Score = 722 bits (364), Expect = 0.0 Identities = 790/932 (84%) Strand = Plus / Plus Query: 254 tcggtgtatctgtcctacgccttctgcaagaggtcgctaatgagagaaaatgatgccaag 313 |||||||| || |||||||||| ||||||||| || || | ||| | || || |||||| Sbjct: 308 tcggtgtacctctcctacgcctcctgcaagagatccctcacgagggccaacgacgccaag 367 Query: 314 gcattcgtcagagtatggaaagtcatggagatgtgctacaagatcttgggcgaagggaag 373 |||||||| ||||| ||||| || |||||||||||||||||||| ||||| || |||||| Sbjct: 368 gcattcgttagagtgtggaaggtgatggagatgtgctacaagattttgggggaggggaag 427 Query: 374 cttgtcacccagcgggagttgttctacaaactactgtcggactcacccaagtacttcagc 433 || ||||||| | ||||| ||||||||| || || || || || |||| ||||||| | Sbjct: 428 ctggtcaccctgagggagctgttctacacgctcctctctgaatcgcccacctacttcacc 487 Query: 434 tgtcagcgtcatgtgaatcaaaccatccaagatgttgtttcattgctccgttgcacaagg 493 || ||||| ||||| || || || | |||||||| | || |||||||| || || ||| Sbjct: 488 tgccagcggcatgtcaaccagactgttcaagatgtcttctcgttgctccggtgtacgagg 547 Query: 494 cagagtttaggaatcatggcatcaagtagaggggcactgattggacgacttgtgttgcat 553 ||||| | || |||||||| || |||||||||||||||||||| || |||||| |||| Sbjct: 548 cagagcctggggatcatggcgtcgagtagaggggcactgattgggcggcttgtggtgcag 607 Query: 554 gaaccagaggaagaacacatcgattgttccattctcggaccttctgggcatgccattact 613 | || ||||||||||| | || || |||||||| ||||||||||||||||| || ||| Sbjct: 608 gggccggaggaagaacatgttgactgctccattcttggaccttctgggcatgcgatcact 667 Query: 614 ggggatctgaaccaattgagcagattaaatttgtcttcagatgcccgttatctcattcta 673 || ||||| || |||||||| ||||| || ||||||||||| || ||| ||||| || Sbjct: 668 ggagatctcaatgtattgagcaaattaatcttttcttcagatgcgcggtatatcattgta 727 Query: 674 gtggagaaggatgccatatttcagaggctggctgaagaccgcttatataatcagcttcca 733 |||||||||||||||||||||||||||||||||||||| ||| |||||| ||| ||||| Sbjct: 728 gtggagaaggatgccatatttcagaggctggctgaagatcgcatatatagtcaccttccg 787 Query: 734 tgtatcctgatcactgcaaaaggatatcctgatatcgcaacgaggtttatcttgcatcga 793 ||||||||||| ||||||||||||||||||||| | || || |||||||||||||||||| Sbjct: 788 tgtatcctgattactgcaaaaggatatcctgatcttgccacaaggtttatcttgcatcga 847 Query: 794 ctgagccagacttttccaaatatgccaatatttgcattagtggactggaaccctgcaggg 853 ||||||||||||| ||| || ||||| || || |||||||| ||||||||||| |||||| Sbjct: 848 ctgagccagacttatccgaacatgccgattttcgcattagtagactggaacccagcaggg 907 Query: 854 ctctctatactgtgtacttacaaatatggaagcatatcaatgggcttggaatcatacaga 913 || ||||||| || |||||||| ||||||||||| |||||||| ||||||||||||||| Sbjct: 908 cttgctatactatgcacttacaagtatggaagcatttcaatgggtttggaatcatacaga 967 Query: 914 tacgcttgcaatgtaaaatggcttggcctaagaggagatgatctgcagcttatccctcag 973 || |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 968 tatgcttgcaatgtaaaatggcttggcctaagaggagatgatctgcagcttatacctcag 1027 Query: 974 agttcattccaagagttgaaacctcgtgatttgcaggtcgccaaaagcttgctgtcatct 1033 || ||| ||||| |||| || |||||| ||||| | ||||||||||||||||||||| Sbjct: 1028 agcgcatatcaagaactgaagccacgtgatctgcagattgccaaaagcttgctgtcatct 1087 Query: 1034 aagtttcttcaggacacgcacagagcggagttgacacggatggtcgagacgggcacgcgt 1093 |||||||| ||||||| ||||||||| ||| |||||| |||| | ||||| |||| |||| Sbjct: 1088 aagtttctgcaggacaagcacagagctgagctgacactgatgttggagacaggcaagcgt 1147 Query: 1094 gctgaggtcgaagctctctattgccatggttttgatttcctggggaagttcatcgccagg 1153 || ||| ||||||||||||| | ||||| ||||||||||||||||| | | || ||| Sbjct: 1148 gccgagatcgaagctctctactcacatgggtttgatttcctggggaaatatgttgcaagg 1207 Query: 1154 aagattgtgcagggtgattacatttgacagtg 1185 |||||||| ||||||||||||||||||||||| Sbjct: 1208 aagattgtacagggtgattacatttgacagtg 1239 Score = 99.6 bits (50), Expect = 3e-17 Identities = 86/98 (87%) Strand = Plus / Plus Query: 53 tcgctcttcggtgcggactgccgcctctgctcagccgacgtgctctcgccccccgaggtt 112 ||||||||||| || ||| ||||||||||||| |||||| | ||| | ||| ||||||| Sbjct: 104 tcgctcttcggcgccgaccgccgcctctgctccgccgacatcctccctcccgccgaggtg 163 Query: 113 cgggcaaggatcgaggtggcggtgctcaatttcctcgc 150 ||||| ||||||||||||||||||||||| |||||||| Sbjct: 164 cgggcgaggatcgaggtggcggtgctcaacttcctcgc 201
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8 Length = 28434780 Score = 155 bits (78), Expect = 6e-34 Identities = 117/130 (90%) Strand = Plus / Minus Query: 917 gcttgcaatgtaaaatggcttggcctaagaggagatgatctgcagcttatccctcagagt 976 |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 3295835 gcttgcaatgtaaaatggcttggcctaagaggagatgatctgcagcttatacctcagagc 3295776 Query: 977 tcattccaagagttgaaacctcgtgatttgcaggtcgccaaaagcttgctgtcatctaag 1036 ||| ||||| |||| || |||||| ||||| | |||||||||||||||||||||||| Sbjct: 3295775 gcatatcaagaactgaagccacgtgatctgcagattgccaaaagcttgctgtcatctaag 3295716 Query: 1037 tttcttcagg 1046 ||||| |||| Sbjct: 3295715 tttctgcagg 3295706 Score = 123 bits (62), Expect = 2e-24 Identities = 80/86 (93%) Strand = Plus / Minus Query: 681 aggatgccatatttcagaggctggctgaagaccgcttatataatcagcttccatgtatcc 740 ||||||||||||||||||||||||||||||| ||| |||||| ||| ||||| ||||||| Sbjct: 3296379 aggatgccatatttcagaggctggctgaagatcgcatatatagtcaccttccgtgtatcc 3296320 Query: 741 tgatcactgcaaaaggatatcctgat 766 |||| ||||||||||||||||||||| Sbjct: 3296319 tgattactgcaaaaggatatcctgat 3296294 Score = 117 bits (59), Expect = 1e-22 Identities = 122/143 (85%) Strand = Plus / Minus Query: 1043 caggacacgcacagagcggagttgacacggatggtcgagacgggcacgcgtgctgaggtc 1102 ||||||| ||||||||| ||| |||||| |||| | ||||| |||| |||||| ||| || Sbjct: 3295267 caggacaagcacagagctgagctgacactgatgttggagacaggcaagcgtgccgagatc 3295208 Query: 1103 gaagctctctattgccatggttttgatttcctggggaagttcatcgccaggaagattgtg 1162 ||||||||||| | ||||| ||||||||||||||||| | | || ||||||||||| Sbjct: 3295207 gaagctctctactcacatgggtttgatttcctggggaaatatgttgcaaggaagattgta 3295148 Query: 1163 cagggtgattacatttgacagtg 1185 ||||||||||||||||||||||| Sbjct: 3295147 cagggtgattacatttgacagtg 3295125 Score = 87.7 bits (44), Expect = 1e-13 Identities = 68/76 (89%) Strand = Plus / Minus Query: 840 ggaaccctgcagggctctctatactgtgtacttacaaatatggaagcatatcaatgggct 899 ||||||| |||||||| ||||||| || |||||||| ||||||||||| |||||||| | Sbjct: 3295982 ggaacccagcagggcttgctatactatgcacttacaagtatggaagcatttcaatgggtt 3295923 Query: 900 tggaatcatacagata 915 |||||||||||||||| Sbjct: 3295922 tggaatcatacagata 3295907 Score = 79.8 bits (40), Expect = 3e-11 Identities = 103/124 (83%) Strand = Plus / Minus Query: 560 gaggaagaacacatcgattgttccattctcggaccttctgggcatgccattactggggat 619 ||||||||||| | || || |||||||| ||||||||||||||||| || ||||| ||| Sbjct: 3296585 gaggaagaacatgttgactgctccattcttggaccttctgggcatgcgatcactggagat 3296526 Query: 620 ctgaaccaattgagcagattaaatttgtcttcagatgcccgttatctcattctagtggag 679 || || |||||||| ||||| || ||||||||||| || ||| ||||| |||||||| Sbjct: 3296525 ctcaatgtattgagcaaattaatcttttcttcagatgcgcggtatatcattgtagtggag 3296466 Query: 680 aagg 683 |||| Sbjct: 3296465 aagg 3296462 Score = 75.8 bits (38), Expect = 4e-10 Identities = 59/66 (89%) Strand = Plus / Minus Query: 776 aggtttatcttgcatcgactgagccagacttttccaaatatgccaatatttgcattagtg 835 ||||||||||||||||||||||||||||||| ||| || ||||| || || |||||||| Sbjct: 3296133 aggtttatcttgcatcgactgagccagacttatccgaacatgccgattttcgcattagta 3296074 Query: 836 gactgg 841 |||||| Sbjct: 3296073 gactgg 3296068 Score = 73.8 bits (37), Expect = 2e-09 Identities = 64/73 (87%) Strand = Plus / Minus Query: 329 tggaaagtcatggagatgtgctacaagatcttgggcgaagggaagcttgtcacccagcgg 388 ||||| || |||||||||||||||||||| ||||| || |||||||| ||||||| | || Sbjct: 3297013 tggaaggtgatggagatgtgctacaagattttgggggaggggaagctggtcaccctgagg 3296954 Query: 389 gagttgttctaca 401 ||| ||||||||| Sbjct: 3296953 gagctgttctaca 3296941 Score = 61.9 bits (31), Expect = 6e-06 Identities = 40/43 (93%) Strand = Plus / Minus Query: 108 aggttcgggcaaggatcgaggtggcggtgctcaatttcctcgc 150 |||| ||||| ||||||||||||||||||||||| |||||||| Sbjct: 3297667 aggtgcgggcgaggatcgaggtggcggtgctcaacttcctcgc 3297625 Score = 60.0 bits (30), Expect = 2e-05 Identities = 75/90 (83%) Strand = Plus / Minus Query: 463 agatgttgtttcattgctccgttgcacaaggcagagtttaggaatcatggcatcaagtag 522 |||||| || || |||||||| || || |||||||| | || |||||||| || ||||| Sbjct: 3296788 agatgtcgtctcgttgctccggtgtacgaggcagagcctggggatcatggcgtcgagtag 3296729 Query: 523 aggggcactgattggacgacttgtgttgca 552 ||||||||||||||| || |||||| |||| Sbjct: 3296728 aggggcactgattgggcggcttgtggtgca 3296699 Score = 46.1 bits (23), Expect = 0.37 Identities = 35/39 (89%) Strand = Plus / Minus Query: 53 tcgctcttcggtgcggactgccgcctctgctcagccgac 91 ||||||||||| || ||| ||||||||||||| |||||| Sbjct: 3297812 tcgctcttcggcgccgaccgccgcctctgctccgccgac 3297774 Score = 42.1 bits (21), Expect = 5.7 Identities = 60/73 (82%) Strand = Plus / Minus Query: 254 tcggtgtatctgtcctacgccttctgcaagaggtcgctaatgagagaaaatgatgccaag 313 |||||||| || |||||||||| ||||||||| || || | ||| | || || |||||| Sbjct: 3297518 tcggtgtacctctcctacgcctcctgcaagagatccctcacgagggccaacgacgccaag 3297459 Query: 314 gcattcgtcagag 326 |||||||| |||| Sbjct: 3297458 gcattcgttagag 3297446
>dbj|AP004460.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0438H08 Length = 148626 Score = 155 bits (78), Expect = 6e-34 Identities = 117/130 (90%) Strand = Plus / Minus Query: 917 gcttgcaatgtaaaatggcttggcctaagaggagatgatctgcagcttatccctcagagt 976 |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 73402 gcttgcaatgtaaaatggcttggcctaagaggagatgatctgcagcttatacctcagagc 73343 Query: 977 tcattccaagagttgaaacctcgtgatttgcaggtcgccaaaagcttgctgtcatctaag 1036 ||| ||||| |||| || |||||| ||||| | |||||||||||||||||||||||| Sbjct: 73342 gcatatcaagaactgaagccacgtgatctgcagattgccaaaagcttgctgtcatctaag 73283 Query: 1037 tttcttcagg 1046 ||||| |||| Sbjct: 73282 tttctgcagg 73273 Score = 123 bits (62), Expect = 2e-24 Identities = 80/86 (93%) Strand = Plus / Minus Query: 681 aggatgccatatttcagaggctggctgaagaccgcttatataatcagcttccatgtatcc 740 ||||||||||||||||||||||||||||||| ||| |||||| ||| ||||| ||||||| Sbjct: 73946 aggatgccatatttcagaggctggctgaagatcgcatatatagtcaccttccgtgtatcc 73887 Query: 741 tgatcactgcaaaaggatatcctgat 766 |||| ||||||||||||||||||||| Sbjct: 73886 tgattactgcaaaaggatatcctgat 73861 Score = 117 bits (59), Expect = 1e-22 Identities = 122/143 (85%) Strand = Plus / Minus Query: 1043 caggacacgcacagagcggagttgacacggatggtcgagacgggcacgcgtgctgaggtc 1102 ||||||| ||||||||| ||| |||||| |||| | ||||| |||| |||||| ||| || Sbjct: 72834 caggacaagcacagagctgagctgacactgatgttggagacaggcaagcgtgccgagatc 72775 Query: 1103 gaagctctctattgccatggttttgatttcctggggaagttcatcgccaggaagattgtg 1162 ||||||||||| | ||||| ||||||||||||||||| | | || ||||||||||| Sbjct: 72774 gaagctctctactcacatgggtttgatttcctggggaaatatgttgcaaggaagattgta 72715 Query: 1163 cagggtgattacatttgacagtg 1185 ||||||||||||||||||||||| Sbjct: 72714 cagggtgattacatttgacagtg 72692 Score = 87.7 bits (44), Expect = 1e-13 Identities = 68/76 (89%) Strand = Plus / Minus Query: 840 ggaaccctgcagggctctctatactgtgtacttacaaatatggaagcatatcaatgggct 899 ||||||| |||||||| ||||||| || |||||||| ||||||||||| |||||||| | Sbjct: 73549 ggaacccagcagggcttgctatactatgcacttacaagtatggaagcatttcaatgggtt 73490 Query: 900 tggaatcatacagata 915 |||||||||||||||| Sbjct: 73489 tggaatcatacagata 73474 Score = 79.8 bits (40), Expect = 3e-11 Identities = 103/124 (83%) Strand = Plus / Minus Query: 560 gaggaagaacacatcgattgttccattctcggaccttctgggcatgccattactggggat 619 ||||||||||| | || || |||||||| ||||||||||||||||| || ||||| ||| Sbjct: 74152 gaggaagaacatgttgactgctccattcttggaccttctgggcatgcgatcactggagat 74093 Query: 620 ctgaaccaattgagcagattaaatttgtcttcagatgcccgttatctcattctagtggag 679 || || |||||||| ||||| || ||||||||||| || ||| ||||| |||||||| Sbjct: 74092 ctcaatgtattgagcaaattaatcttttcttcagatgcgcggtatatcattgtagtggag 74033 Query: 680 aagg 683 |||| Sbjct: 74032 aagg 74029 Score = 75.8 bits (38), Expect = 4e-10 Identities = 59/66 (89%) Strand = Plus / Minus Query: 776 aggtttatcttgcatcgactgagccagacttttccaaatatgccaatatttgcattagtg 835 ||||||||||||||||||||||||||||||| ||| || ||||| || || |||||||| Sbjct: 73700 aggtttatcttgcatcgactgagccagacttatccgaacatgccgattttcgcattagta 73641 Query: 836 gactgg 841 |||||| Sbjct: 73640 gactgg 73635 Score = 73.8 bits (37), Expect = 2e-09 Identities = 64/73 (87%) Strand = Plus / Minus Query: 329 tggaaagtcatggagatgtgctacaagatcttgggcgaagggaagcttgtcacccagcgg 388 ||||| || |||||||||||||||||||| ||||| || |||||||| ||||||| | || Sbjct: 74580 tggaaggtgatggagatgtgctacaagattttgggggaggggaagctggtcaccctgagg 74521 Query: 389 gagttgttctaca 401 ||| ||||||||| Sbjct: 74520 gagctgttctaca 74508 Score = 61.9 bits (31), Expect = 6e-06 Identities = 40/43 (93%) Strand = Plus / Minus Query: 108 aggttcgggcaaggatcgaggtggcggtgctcaatttcctcgc 150 |||| ||||| ||||||||||||||||||||||| |||||||| Sbjct: 75234 aggtgcgggcgaggatcgaggtggcggtgctcaacttcctcgc 75192 Score = 60.0 bits (30), Expect = 2e-05 Identities = 75/90 (83%) Strand = Plus / Minus Query: 463 agatgttgtttcattgctccgttgcacaaggcagagtttaggaatcatggcatcaagtag 522 |||||| || || |||||||| || || |||||||| | || |||||||| || ||||| Sbjct: 74355 agatgtcgtctcgttgctccggtgtacgaggcagagcctggggatcatggcgtcgagtag 74296 Query: 523 aggggcactgattggacgacttgtgttgca 552 ||||||||||||||| || |||||| |||| Sbjct: 74295 aggggcactgattgggcggcttgtggtgca 74266 Score = 46.1 bits (23), Expect = 0.37 Identities = 35/39 (89%) Strand = Plus / Minus Query: 53 tcgctcttcggtgcggactgccgcctctgctcagccgac 91 ||||||||||| || ||| ||||||||||||| |||||| Sbjct: 75379 tcgctcttcggcgccgaccgccgcctctgctccgccgac 75341 Score = 42.1 bits (21), Expect = 5.7 Identities = 60/73 (82%) Strand = Plus / Minus Query: 254 tcggtgtatctgtcctacgccttctgcaagaggtcgctaatgagagaaaatgatgccaag 313 |||||||| || |||||||||| ||||||||| || || | ||| | || || |||||| Sbjct: 75085 tcggtgtacctctcctacgcctcctgcaagagatccctcacgagggccaacgacgccaag 75026 Query: 314 gcattcgtcagag 326 |||||||| |||| Sbjct: 75025 gcattcgttagag 75013
>gb|DQ446392.1| Arabidopsis thaliana clone pENTR221-At1g63990 DNA topoisomerase VIA (At1g63990) mRNA, complete cds Length = 1152 Score = 58.0 bits (29), Expect = 1e-04 Identities = 47/53 (88%) Strand = Plus / Plus Query: 906 catacagatacgcttgcaatgtaaaatggcttggcctaagaggagatgatctg 958 |||||||||||||||||||||| || ||| |||| || |||||||||||||| Sbjct: 878 catacagatacgcttgcaatgtgaagtggattggtctccgaggagatgatctg 930
>ref|NM_105072.2| Arabidopsis thaliana ATP binding / DNA binding / DNA topoisomerase (ATP-hydrolyzing) (AT1G63990) mRNA, complete cds Length = 1656 Score = 58.0 bits (29), Expect = 1e-04 Identities = 47/53 (88%) Strand = Plus / Plus Query: 906 catacagatacgcttgcaatgtaaaatggcttggcctaagaggagatgatctg 958 |||||||||||||||||||||| || ||| |||| || |||||||||||||| Sbjct: 901 catacagatacgcttgcaatgtgaagtggattggtctccgaggagatgatctg 953
>emb|AJ251990.1|ATH251990 Arabidopsis thaliana mRNA for putative topoisomerase VIA (SPO11 gene 2) Length = 1655 Score = 58.0 bits (29), Expect = 1e-04 Identities = 47/53 (88%) Strand = Plus / Plus Query: 906 catacagatacgcttgcaatgtaaaatggcttggcctaagaggagatgatctg 958 |||||||||||||||||||||| || ||| |||| || |||||||||||||| Sbjct: 901 catacagatacgcttgcaatgtgaagtggattggtctccgaggagatgatctg 953
>gb|AC060226.39| Homo sapiens 12 BAC RP11-101P14 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 132604 Score = 48.1 bits (24), Expect = 0.093 Identities = 24/24 (100%) Strand = Plus / Minus Query: 1180 acagtgttttttctctctggctgt 1203 |||||||||||||||||||||||| Sbjct: 34814 acagtgttttttctctctggctgt 34791
>gb|AC166556.2| Spironucleus vortens clone JGIBAWF-5F14, complete sequence Length = 39788 Score = 46.1 bits (23), Expect = 0.37 Identities = 23/23 (100%) Strand = Plus / Minus Query: 1062 agttgacacggatggtcgagacg 1084 ||||||||||||||||||||||| Sbjct: 13966 agttgacacggatggtcgagacg 13944
>dbj|AK087578.1| Mus musculus 2 days pregnant adult female oviduct cDNA, RIKEN full-length enriched library, clone:E230013L23 product:unclassifiable, full insert sequence Length = 4163 Score = 44.1 bits (22), Expect = 1.4 Identities = 22/22 (100%) Strand = Plus / Minus Query: 859 tatactgtgtacttacaaatat 880 |||||||||||||||||||||| Sbjct: 896 tatactgtgtacttacaaatat 875
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1 Length = 43261740 Score = 44.1 bits (22), Expect = 1.4 Identities = 22/22 (100%) Strand = Plus / Plus Query: 811 aaatatgccaatatttgcatta 832 |||||||||||||||||||||| Sbjct: 16762801 aaatatgccaatatttgcatta 16762822
>gb|AC103378.21| Mus musculus chromosome 8, clone RP24-231N10, complete sequence Length = 191479 Score = 44.1 bits (22), Expect = 1.4 Identities = 22/22 (100%) Strand = Plus / Minus Query: 859 tatactgtgtacttacaaatat 880 |||||||||||||||||||||| Sbjct: 82139 tatactgtgtacttacaaatat 82118
>gb|AC189861.1| Gallus gallus chromosome Z clone CH261-177L11, complete sequence Length = 225936 Score = 42.1 bits (21), Expect = 5.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 689 atatttcagaggctggctgaa 709 ||||||||||||||||||||| Sbjct: 46162 atatttcagaggctggctgaa 46142
>gb|AC189264.1| Brassica rapa subsp. pekinensis clone KBrB022A09, complete sequence Length = 104182 Score = 42.1 bits (21), Expect = 5.7 Identities = 36/41 (87%) Strand = Plus / Minus Query: 917 gcttgcaatgtaaaatggcttggcctaagaggagatgatct 957 ||||||||||| || ||| |||| || |||||||||||||| Sbjct: 58266 gcttgcaatgttaagtggattgggctcagaggagatgatct 58226
>emb|BX571812.8| Zebrafish DNA sequence from clone CH211-194I4 in linkage group 2, complete sequence Length = 69979 Score = 42.1 bits (21), Expect = 5.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 291 taatgagagaaaatgatgcca 311 ||||||||||||||||||||| Sbjct: 59698 taatgagagaaaatgatgcca 59678
>dbj|AP008231.1| Synechococcus elongatus PCC 6301 DNA, complete genome Length = 2696255 Score = 42.1 bits (21), Expect = 5.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 621 tgaaccaattgagcagattaa 641 ||||||||||||||||||||| Sbjct: 1630317 tgaaccaattgagcagattaa 1630337
>emb|AL359647.9| Human DNA sequence from clone RP11-431P10 on chromosome 13 Contains a chaperonin containing TCP1, subunit 5 (epsilon) (KIAA0098) (CCT5) pseudogene, complete sequence Length = 86050 Score = 42.1 bits (21), Expect = 5.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 684 atgccatatttcagaggctgg 704 ||||||||||||||||||||| Sbjct: 37876 atgccatatttcagaggctgg 37856
>emb|AL035448.29|HS742J24 Human DNA sequence from clone RP4-742J24 on chromosome 20p11.23-12.3 Contains the BTBD3 gene for BTB (POZ) domain containing 3 (KIAA0952), a novel gene and a CpG island, complete sequence Length = 167075 Score = 42.1 bits (21), Expect = 5.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 805 ttttccaaatatgccaatatt 825 ||||||||||||||||||||| Sbjct: 130291 ttttccaaatatgccaatatt 130311
>gb|CP000100.1| Synechococcus elongatus PCC 7942, complete genome Length = 2695903 Score = 42.1 bits (21), Expect = 5.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 621 tgaaccaattgagcagattaa 641 ||||||||||||||||||||| Sbjct: 2686469 tgaaccaattgagcagattaa 2686449 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 245,090,591 Number of extensions: 12464601 Number of successful extensions: 258011 Number of sequences better than 10.0: 22 Number of HSP's gapped: 258001 Number of HSP's successfully gapped: 46 Length of query: 1503 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 1480 Effective length of database: 18,503,978,556 Effective search space: 27385888262880 Effective search space used: 27385888262880 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)
