ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf23m16 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_001050941.1| Oryza sativa (japonica cultivar-group) Os01g0775100 (Os01g0775100) mRNA, partial cds Length = 3120 Score = 371 bits (187), Expect = 1e-98 Identities = 316/359 (88%) Strand = Plus / Plus Query: 2378 caagtgttgtttttggagccttacaaaggcttcgtttgcctcgatcagatatcataagat 2437 ||||||| |||||||||||||| || ||||| |||||| |||| || ||||| ||||||| Sbjct: 2337 caagtgtagtttttggagccttgcagaggctccgtttgtctcgctccgatataataagat 2396 Query: 2438 ggttgacgtcaccaatacagcacactaccttagatggctttttcttgcgtctacgatttg 2497 || ||| ||||||| | |||||| |||||||||||||||||||||||||||||||||| Sbjct: 2397 ggatgaggtcaccagttatgcacaccaccttagatggctttttcttgcgtctacgatttg 2456 Query: 2498 gtaaatgggaggaagcattgggtggcacaggataccatgtcgctcggataaatggagcac 2557 |||||||||||||||||||||||||||| ||||| ||||| || |||||||||||| || Sbjct: 2457 gtaaatgggaggaagcattgggtggcactggatatcatgttgccaggataaatggagtac 2516 Query: 2558 tggataggaatcggctctctgtaacgatcaggaattcaacctgccaagtagattctcgtt 2617 |||||| |||||| || ||||| || |||||||||||||| ||||||||||||||||| | Sbjct: 2517 tggataagaatcgcctttctgtgaccatcaggaattcaacttgccaagtagattctcgct 2576 Query: 2618 ttgtatccaaccatggcttccatgaggacgagctgaaggcgtggtggtctgctgccatga 2677 ||||||||||||||| |||||| |||| ||||||||||| |||||||| |||||||||| Sbjct: 2577 ttgtatccaaccatgacttccaccaggatgagctgaaggcatggtggtcagctgccatga 2636 Query: 2678 agggtggctggaaactaccgtcgaaagaagaacttagcaagaagctaagagaaagagag 2736 || ||||||||||||| || ||| |||||||||| | | ||||||| ||||||||||| Sbjct: 2637 agagtggctggaaactgccttcgcaagaagaactcaatacgaagctacgagaaagagag 2695 Score = 174 bits (88), Expect = 1e-39 Identities = 312/386 (80%), Gaps = 3/386 (0%) Strand = Plus / Plus Query: 801 atgtgattcagcatccggtgttaattctgttgcaagatatgagtcaacaccagatgttaa 860 |||||| | |||||| ||||||||| || | |||||| ||||||| ||| | | | ||| Sbjct: 823 atgtgagttagcatctggtgttaatcctttagcaagacatgagtcgacatccggttgtaa 882 Query: 861 tcctgaaaagctcaagaagggcaaagaaaaggtaatgcacgaccagagcaattgtgttag 920 |||| ||||||| ||||||| ||||||||| | || | || ||| ||||||||||| Sbjct: 883 tcctagaaagctcgagaaggggaaagaaaagcttatctatgatatgagtaattgtgttag 942 Query: 921 caacacaaaagagggcgatgatagtaatgagagtatggagagctgccctaggacaaaagc 980 ||||||||| || || ||||| || ||||||||||| ||||||||||| || |||||||| Sbjct: 943 caacacaaatgaaggtgatgacagcaatgagagtatagagagctgcccaagtacaaaagc 1002 Query: 981 tccgaagcgagagtatgctcaatactcagcagcggagatgtcttctcggaataaaagata 1040 ||||||||| || ||| ||||| || ||||| |||||| | ||| | |||||||||| Sbjct: 1003 tccgaagcggaagcatggtcaattttctgcagctgagatgacgtctggaaataaaagatg 1062 Query: 1041 tagaagggaatacaatgaaggctattgctctggattgttgaacagaaatggtagctcttt 1100 |||||||||| | ||||| | | ||| || ||||| || ||| ||||| ||||||||| Sbjct: 1063 tagaagggaagataatgagagttcttgttcaggattattccacaaaaatgatagctcttt 1122 Query: 1101 ctttaactggatgtcatctctgactaatggatcaaccgtgtttgataaaactaccaccgc 1160 |||||||||||||||| |||| ||||||||| || ||||||||| ||||| || || Sbjct: 1123 ctttaactggatgtcaactctcactaatggagtaaaggtgtttgatgaaact---actgc 1179 Query: 1161 tgtttcactcaatcagaagttgtcag 1186 |||| |||| ||||||||||| |||| Sbjct: 1180 tgttccacttaatcagaagttttcag 1205 Score = 129 bits (65), Expect = 7e-26 Identities = 139/163 (85%), Gaps = 3/163 (1%) Strand = Plus / Plus Query: 1784 ttaatgtggagaaggaattcaacagttcgcaatactttactagcacaggaagtgacaatg 1843 ||||||||||||||||||| |||| ||| |||||||||||||||| |||||||||||||| Sbjct: 1737 ttaatgtggagaaggaattaaacaattcacaatactttactagcaaaggaagtgacaatg 1796 Query: 1844 agacaacaagtagcaaatgcccggtgattcctccagaggaacataagcagtccgaaacaa 1903 | || |||||||||||||| ||| | |||| ||| ||| |||| | || ||||||| Sbjct: 1797 aaactacaagtagcaaatgtgcggcg---cctcaagacgaaaataaaccatcagaaacaa 1853 Query: 1904 tggcttccattcttgcaaagagattggatgcgcttagacatgc 1946 |||| || ||| |||| || ||||||||||||||||||||||| Sbjct: 1854 tggcatcaatttttgctaaaagattggatgcgcttagacatgc 1896 Score = 121 bits (61), Expect = 2e-23 Identities = 106/121 (87%) Strand = Plus / Plus Query: 418 gaaaaacaggcctattgtgcaactgctgtccataatgagagatcttgggcagataatacc 477 ||||||||||| | ||||||||| |||||||| |||| ||||||||||||| |||| | Sbjct: 518 gaaaaacaggctttctgtgcaactactgtccatgatgaaagatcttgggcagctaatgct 577 Query: 478 tggcgagctcgattagtaaatgcaatcagtcagagggactatgttttgccaaacaatgca 537 ||||| |||||||||||||| ||||| ||||||| ||||| |||||||||||| |||||| Sbjct: 578 tggcgtgctcgattagtaaaagcaattagtcagaaggactctgttttgccaaagaatgca 637 Query: 538 g 538 | Sbjct: 638 g 638 Score = 91.7 bits (46), Expect = 2e-14 Identities = 55/58 (94%) Strand = Plus / Plus Query: 1258 gttggcttcaattctctatttcaatctctttatagtcataacgttatgataacttcaa 1315 ||||||||||||||||| |||||||||||||||||||| || |||||||||||||||| Sbjct: 1277 gttggcttcaattctctttttcaatctctttatagtcagaatgttatgataacttcaa 1334 Score = 58.0 bits (29), Expect = 2e-04 Identities = 47/53 (88%) Strand = Plus / Plus Query: 2303 caaattccatggagagtctgccacataacaagcaaattgtaccttatagtatt 2355 ||||||||||||||| || |||| ||||||| ||||| ||||||||| ||||| Sbjct: 2259 caaattccatggagaatcagccagataacaaacaaatggtaccttatggtatt 2311 Score = 56.0 bits (28), Expect = 8e-04 Identities = 52/60 (86%) Strand = Plus / Plus Query: 1405 ggcagagaaactcttgatgtggctgttgggaatttagctgctggcagccttcaaatggat 1464 ||||||||||||||| |||||||| || || ||||||||| ||||| ||||||||||| Sbjct: 1418 ggcagagaaactcttaatgtggctactgagactttagctgcgggcagaattcaaatggat 1477 Score = 56.0 bits (28), Expect = 8e-04 Identities = 40/44 (90%) Strand = Plus / Plus Query: 2096 tagttttgtggtcgggtgacaaaggtaaggaacaattatatcct 2139 ||||||| ||| | ||||||||||||||||||||||||| |||| Sbjct: 2052 tagttttatggacaggtgacaaaggtaaggaacaattatctcct 2095
>dbj|AK101217.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033031C11, full insert sequence Length = 3122 Score = 371 bits (187), Expect = 1e-98 Identities = 316/359 (88%) Strand = Plus / Plus Query: 2378 caagtgttgtttttggagccttacaaaggcttcgtttgcctcgatcagatatcataagat 2437 ||||||| |||||||||||||| || ||||| |||||| |||| || ||||| ||||||| Sbjct: 2339 caagtgtagtttttggagccttgcagaggctccgtttgtctcgctccgatataataagat 2398 Query: 2438 ggttgacgtcaccaatacagcacactaccttagatggctttttcttgcgtctacgatttg 2497 || ||| ||||||| | |||||| |||||||||||||||||||||||||||||||||| Sbjct: 2399 ggatgaggtcaccagttatgcacaccaccttagatggctttttcttgcgtctacgatttg 2458 Query: 2498 gtaaatgggaggaagcattgggtggcacaggataccatgtcgctcggataaatggagcac 2557 |||||||||||||||||||||||||||| ||||| ||||| || |||||||||||| || Sbjct: 2459 gtaaatgggaggaagcattgggtggcactggatatcatgttgccaggataaatggagtac 2518 Query: 2558 tggataggaatcggctctctgtaacgatcaggaattcaacctgccaagtagattctcgtt 2617 |||||| |||||| || ||||| || |||||||||||||| ||||||||||||||||| | Sbjct: 2519 tggataagaatcgcctttctgtgaccatcaggaattcaacttgccaagtagattctcgct 2578 Query: 2618 ttgtatccaaccatggcttccatgaggacgagctgaaggcgtggtggtctgctgccatga 2677 ||||||||||||||| |||||| |||| ||||||||||| |||||||| |||||||||| Sbjct: 2579 ttgtatccaaccatgacttccaccaggatgagctgaaggcatggtggtcagctgccatga 2638 Query: 2678 agggtggctggaaactaccgtcgaaagaagaacttagcaagaagctaagagaaagagag 2736 || ||||||||||||| || ||| |||||||||| | | ||||||| ||||||||||| Sbjct: 2639 agagtggctggaaactgccttcgcaagaagaactcaatacgaagctacgagaaagagag 2697 Score = 174 bits (88), Expect = 1e-39 Identities = 312/386 (80%), Gaps = 3/386 (0%) Strand = Plus / Plus Query: 801 atgtgattcagcatccggtgttaattctgttgcaagatatgagtcaacaccagatgttaa 860 |||||| | |||||| ||||||||| || | |||||| ||||||| ||| | | | ||| Sbjct: 825 atgtgagttagcatctggtgttaatcctttagcaagacatgagtcgacatccggttgtaa 884 Query: 861 tcctgaaaagctcaagaagggcaaagaaaaggtaatgcacgaccagagcaattgtgttag 920 |||| ||||||| ||||||| ||||||||| | || | || ||| ||||||||||| Sbjct: 885 tcctagaaagctcgagaaggggaaagaaaagcttatctatgatatgagtaattgtgttag 944 Query: 921 caacacaaaagagggcgatgatagtaatgagagtatggagagctgccctaggacaaaagc 980 ||||||||| || || ||||| || ||||||||||| ||||||||||| || |||||||| Sbjct: 945 caacacaaatgaaggtgatgacagcaatgagagtatagagagctgcccaagtacaaaagc 1004 Query: 981 tccgaagcgagagtatgctcaatactcagcagcggagatgtcttctcggaataaaagata 1040 ||||||||| || ||| ||||| || ||||| |||||| | ||| | |||||||||| Sbjct: 1005 tccgaagcggaagcatggtcaattttctgcagctgagatgacgtctggaaataaaagatg 1064 Query: 1041 tagaagggaatacaatgaaggctattgctctggattgttgaacagaaatggtagctcttt 1100 |||||||||| | ||||| | | ||| || ||||| || ||| ||||| ||||||||| Sbjct: 1065 tagaagggaagataatgagagttcttgttcaggattattccacaaaaatgatagctcttt 1124 Query: 1101 ctttaactggatgtcatctctgactaatggatcaaccgtgtttgataaaactaccaccgc 1160 |||||||||||||||| |||| ||||||||| || ||||||||| ||||| || || Sbjct: 1125 ctttaactggatgtcaactctcactaatggagtaaaggtgtttgatgaaact---actgc 1181 Query: 1161 tgtttcactcaatcagaagttgtcag 1186 |||| |||| ||||||||||| |||| Sbjct: 1182 tgttccacttaatcagaagttttcag 1207 Score = 129 bits (65), Expect = 7e-26 Identities = 139/163 (85%), Gaps = 3/163 (1%) Strand = Plus / Plus Query: 1784 ttaatgtggagaaggaattcaacagttcgcaatactttactagcacaggaagtgacaatg 1843 ||||||||||||||||||| |||| ||| |||||||||||||||| |||||||||||||| Sbjct: 1739 ttaatgtggagaaggaattaaacaattcacaatactttactagcaaaggaagtgacaatg 1798 Query: 1844 agacaacaagtagcaaatgcccggtgattcctccagaggaacataagcagtccgaaacaa 1903 | || |||||||||||||| ||| | |||| ||| ||| |||| | || ||||||| Sbjct: 1799 aaactacaagtagcaaatgtgcggcg---cctcaagacgaaaataaaccatcagaaacaa 1855 Query: 1904 tggcttccattcttgcaaagagattggatgcgcttagacatgc 1946 |||| || ||| |||| || ||||||||||||||||||||||| Sbjct: 1856 tggcatcaatttttgctaaaagattggatgcgcttagacatgc 1898 Score = 121 bits (61), Expect = 2e-23 Identities = 106/121 (87%) Strand = Plus / Plus Query: 418 gaaaaacaggcctattgtgcaactgctgtccataatgagagatcttgggcagataatacc 477 ||||||||||| | ||||||||| |||||||| |||| ||||||||||||| |||| | Sbjct: 520 gaaaaacaggctttctgtgcaactactgtccatgatgaaagatcttgggcagctaatgct 579 Query: 478 tggcgagctcgattagtaaatgcaatcagtcagagggactatgttttgccaaacaatgca 537 ||||| |||||||||||||| ||||| ||||||| ||||| |||||||||||| |||||| Sbjct: 580 tggcgtgctcgattagtaaaagcaattagtcagaaggactctgttttgccaaagaatgca 639 Query: 538 g 538 | Sbjct: 640 g 640 Score = 91.7 bits (46), Expect = 2e-14 Identities = 55/58 (94%) Strand = Plus / Plus Query: 1258 gttggcttcaattctctatttcaatctctttatagtcataacgttatgataacttcaa 1315 ||||||||||||||||| |||||||||||||||||||| || |||||||||||||||| Sbjct: 1279 gttggcttcaattctctttttcaatctctttatagtcagaatgttatgataacttcaa 1336 Score = 58.0 bits (29), Expect = 2e-04 Identities = 47/53 (88%) Strand = Plus / Plus Query: 2303 caaattccatggagagtctgccacataacaagcaaattgtaccttatagtatt 2355 ||||||||||||||| || |||| ||||||| ||||| ||||||||| ||||| Sbjct: 2261 caaattccatggagaatcagccagataacaaacaaatggtaccttatggtatt 2313 Score = 56.0 bits (28), Expect = 8e-04 Identities = 52/60 (86%) Strand = Plus / Plus Query: 1405 ggcagagaaactcttgatgtggctgttgggaatttagctgctggcagccttcaaatggat 1464 ||||||||||||||| |||||||| || || ||||||||| ||||| ||||||||||| Sbjct: 1420 ggcagagaaactcttaatgtggctactgagactttagctgcgggcagaattcaaatggat 1479 Score = 56.0 bits (28), Expect = 8e-04 Identities = 40/44 (90%) Strand = Plus / Plus Query: 2096 tagttttgtggtcgggtgacaaaggtaaggaacaattatatcct 2139 ||||||| ||| | ||||||||||||||||||||||||| |||| Sbjct: 2054 tagttttatggacaggtgacaaaggtaaggaacaattatctcct 2097
>gb|BT018258.1| Zea mays clone EL01T0201H08.c mRNA sequence Length = 699 Score = 329 bits (166), Expect = 4e-86 Identities = 298/342 (87%) Strand = Plus / Minus Query: 2370 tgatcaatcaagtgttgtttttggagccttacaaaggcttcgtttgcctcgatcagatat 2429 |||| ||||||||||| ||||||| |||||||| |||||||| || | || |||||||| Sbjct: 644 tgatgaatcaagtgttatttttggtgccttacataggcttcgcctgtcccgctcagatat 585 Query: 2430 cataagatggttgacgtcaccaatacagcacactaccttagatggctttttcttgcgtct 2489 | |||||||| ||| ||||| || ||||||||| |||||||||||||| | || || Sbjct: 584 cttaagatggctgagatcaccgatcatgcacactacgttagatggcttttttgtccgact 525 Query: 2490 acgatttggtaaatgggaggaagcattgggtggcacaggataccatgtcgctcggataaa 2549 ||||||||||||||||||||||||||||||||||||||||||||||| || || | || Sbjct: 524 gcgatttggtaaatgggaggaagcattgggtggcacaggataccatgttgcccgcctgaa 465 Query: 2550 tggagcactggataggaatcggctctctgtaacgatcaggaattcaacctgccaagtaga 2609 ||||||||| ||||||| ||| || |||||||| ||||| ||||||||||| |||||||| Sbjct: 464 tggagcacttgataggagtcgcctttctgtaaccatcagaaattcaacctgtcaagtaga 405 Query: 2610 ttctcgttttgtatccaaccatggcttccatgaggacgagctgaaggcgtggtggtctgc 2669 |||||| |||||||||||||||| |||||||||||| ||||||||||| ||||||||||| Sbjct: 404 ttctcgctttgtatccaaccatgacttccatgaggatgagctgaaggcatggtggtctgc 345 Query: 2670 tgccatgaagggtggctggaaactaccgtcgaaagaagaact 2711 ||| |||||||||| ||||| ||||||||||| |||||||| Sbjct: 344 tgctatgaagggtgagtggaagctaccgtcgaaggaagaact 303
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1 Length = 43261740 Score = 174 bits (88), Expect = 1e-39 Identities = 312/386 (80%), Gaps = 3/386 (0%) Strand = Plus / Minus Query: 801 atgtgattcagcatccggtgttaattctgttgcaagatatgagtcaacaccagatgttaa 860 |||||| | |||||| ||||||||| || | |||||| ||||||| ||| | | | ||| Sbjct: 32755626 atgtgagttagcatctggtgttaatcctttagcaagacatgagtcgacatccggttgtaa 32755567 Query: 861 tcctgaaaagctcaagaagggcaaagaaaaggtaatgcacgaccagagcaattgtgttag 920 |||| ||||||| ||||||| ||||||||| | || | || ||| ||||||||||| Sbjct: 32755566 tcctagaaagctcgagaaggggaaagaaaagcttatctatgatatgagtaattgtgttag 32755507 Query: 921 caacacaaaagagggcgatgatagtaatgagagtatggagagctgccctaggacaaaagc 980 ||||||||| || || ||||| || ||||||||||| ||||||||||| || |||||||| Sbjct: 32755506 caacacaaatgaaggtgatgacagcaatgagagtatagagagctgcccaagtacaaaagc 32755447 Query: 981 tccgaagcgagagtatgctcaatactcagcagcggagatgtcttctcggaataaaagata 1040 ||||||||| || ||| ||||| || ||||| |||||| | ||| | |||||||||| Sbjct: 32755446 tccgaagcggaagcatggtcaattttctgcagctgagatgacgtctggaaataaaagatg 32755387 Query: 1041 tagaagggaatacaatgaaggctattgctctggattgttgaacagaaatggtagctcttt 1100 |||||||||| | ||||| | | ||| || ||||| || ||| ||||| ||||||||| Sbjct: 32755386 tagaagggaagataatgagagttcttgttcaggattattccacaaaaatgatagctcttt 32755327 Query: 1101 ctttaactggatgtcatctctgactaatggatcaaccgtgtttgataaaactaccaccgc 1160 |||||||||||||||| |||| ||||||||| || ||||||||| ||||| || || Sbjct: 32755326 ctttaactggatgtcaactctcactaatggagtaaaggtgtttgatgaaact---actgc 32755270 Query: 1161 tgtttcactcaatcagaagttgtcag 1186 |||| |||| ||||||||||| |||| Sbjct: 32755269 tgttccacttaatcagaagttttcag 32755244 Score = 143 bits (72), Expect = 5e-30 Identities = 90/96 (93%) Strand = Plus / Minus Query: 2457 gcacactaccttagatggctttttcttgcgtctacgatttggtaaatgggaggaagcatt 2516 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 32753387 gcacaccaccttagatggctttttcttgcgtctacgatttggtaaatgggaggaagcatt 32753328 Query: 2517 gggtggcacaggataccatgtcgctcggataaatgg 2552 ||||||||| ||||| ||||| || |||||||||| Sbjct: 32753327 gggtggcactggatatcatgttgccaggataaatgg 32753292 Score = 129 bits (65), Expect = 7e-26 Identities = 139/163 (85%), Gaps = 3/163 (1%) Strand = Plus / Minus Query: 1784 ttaatgtggagaaggaattcaacagttcgcaatactttactagcacaggaagtgacaatg 1843 ||||||||||||||||||| |||| ||| |||||||||||||||| |||||||||||||| Sbjct: 32754712 ttaatgtggagaaggaattaaacaattcacaatactttactagcaaaggaagtgacaatg 32754653 Query: 1844 agacaacaagtagcaaatgcccggtgattcctccagaggaacataagcagtccgaaacaa 1903 | || |||||||||||||| ||| | |||| ||| ||| |||| | || ||||||| Sbjct: 32754652 aaactacaagtagcaaatgtgcggcg---cctcaagacgaaaataaaccatcagaaacaa 32754596 Query: 1904 tggcttccattcttgcaaagagattggatgcgcttagacatgc 1946 |||| || ||| |||| || ||||||||||||||||||||||| Sbjct: 32754595 tggcatcaatttttgctaaaagattggatgcgcttagacatgc 32754553 Score = 121 bits (61), Expect = 2e-23 Identities = 106/121 (87%) Strand = Plus / Minus Query: 418 gaaaaacaggcctattgtgcaactgctgtccataatgagagatcttgggcagataatacc 477 ||||||||||| | ||||||||| |||||||| |||| ||||||||||||| |||| | Sbjct: 32755931 gaaaaacaggctttctgtgcaactactgtccatgatgaaagatcttgggcagctaatgct 32755872 Query: 478 tggcgagctcgattagtaaatgcaatcagtcagagggactatgttttgccaaacaatgca 537 ||||| |||||||||||||| ||||| ||||||| ||||| |||||||||||| |||||| Sbjct: 32755871 tggcgtgctcgattagtaaaagcaattagtcagaaggactctgttttgccaaagaatgca 32755812 Query: 538 g 538 | Sbjct: 32755811 g 32755811 Score = 105 bits (53), Expect = 1e-18 Identities = 80/89 (89%) Strand = Plus / Minus Query: 2551 ggagcactggataggaatcggctctctgtaacgatcaggaattcaacctgccaagtagat 2610 |||| |||||||| |||||| || ||||| || |||||||||||||| |||||||||||| Sbjct: 32753177 ggagtactggataagaatcgcctttctgtgaccatcaggaattcaacttgccaagtagat 32753118 Query: 2611 tctcgttttgtatccaaccatggcttcca 2639 ||||| |||||||||||||||| |||||| Sbjct: 32753117 tctcgctttgtatccaaccatgacttcca 32753089 Score = 93.7 bits (47), Expect = 4e-15 Identities = 83/95 (87%) Strand = Plus / Minus Query: 2642 aggacgagctgaaggcgtggtggtctgctgccatgaagggtggctggaaactaccgtcga 2701 |||| ||||||||||| |||||||| |||||||||||| ||||||||||||| || ||| Sbjct: 32752934 aggatgagctgaaggcatggtggtcagctgccatgaagagtggctggaaactgccttcgc 32752875 Query: 2702 aagaagaacttagcaagaagctaagagaaagagag 2736 |||||||||| | | ||||||| ||||||||||| Sbjct: 32752874 aagaagaactcaatacgaagctacgagaaagagag 32752840 Score = 91.7 bits (46), Expect = 2e-14 Identities = 55/58 (94%) Strand = Plus / Minus Query: 1258 gttggcttcaattctctatttcaatctctttatagtcataacgttatgataacttcaa 1315 ||||||||||||||||| |||||||||||||||||||| || |||||||||||||||| Sbjct: 32755172 gttggcttcaattctctttttcaatctctttatagtcagaatgttatgataacttcaa 32755115 Score = 58.0 bits (29), Expect = 2e-04 Identities = 47/53 (88%) Strand = Plus / Minus Query: 2303 caaattccatggagagtctgccacataacaagcaaattgtaccttatagtatt 2355 ||||||||||||||| || |||| ||||||| ||||| ||||||||| ||||| Sbjct: 32754190 caaattccatggagaatcagccagataacaaacaaatggtaccttatggtatt 32754138 Score = 56.0 bits (28), Expect = 8e-04 Identities = 40/44 (90%) Strand = Plus / Minus Query: 2096 tagttttgtggtcgggtgacaaaggtaaggaacaattatatcct 2139 ||||||| ||| | ||||||||||||||||||||||||| |||| Sbjct: 32754397 tagttttatggacaggtgacaaaggtaaggaacaattatctcct 32754354 Score = 56.0 bits (28), Expect = 8e-04 Identities = 52/60 (86%) Strand = Plus / Minus Query: 1405 ggcagagaaactcttgatgtggctgttgggaatttagctgctggcagccttcaaatggat 1464 ||||||||||||||| |||||||| || || ||||||||| ||||| ||||||||||| Sbjct: 32755031 ggcagagaaactcttaatgtggctactgagactttagctgcgggcagaattcaaatggat 32754972 Score = 52.0 bits (26), Expect = 0.013 Identities = 50/58 (86%) Strand = Plus / Minus Query: 2378 caagtgttgtttttggagccttacaaaggcttcgtttgcctcgatcagatatcataag 2435 ||||||| |||||||||||||| || ||||| |||||| |||| || ||||| ||||| Sbjct: 32754112 caagtgtagtttttggagccttgcagaggctccgtttgtctcgctccgatataataag 32754055
>dbj|AP003265.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0490D09 Length = 154430 Score = 174 bits (88), Expect = 1e-39 Identities = 312/386 (80%), Gaps = 3/386 (0%) Strand = Plus / Minus Query: 801 atgtgattcagcatccggtgttaattctgttgcaagatatgagtcaacaccagatgttaa 860 |||||| | |||||| ||||||||| || | |||||| ||||||| ||| | | | ||| Sbjct: 118421 atgtgagttagcatctggtgttaatcctttagcaagacatgagtcgacatccggttgtaa 118362 Query: 861 tcctgaaaagctcaagaagggcaaagaaaaggtaatgcacgaccagagcaattgtgttag 920 |||| ||||||| ||||||| ||||||||| | || | || ||| ||||||||||| Sbjct: 118361 tcctagaaagctcgagaaggggaaagaaaagcttatctatgatatgagtaattgtgttag 118302 Query: 921 caacacaaaagagggcgatgatagtaatgagagtatggagagctgccctaggacaaaagc 980 ||||||||| || || ||||| || ||||||||||| ||||||||||| || |||||||| Sbjct: 118301 caacacaaatgaaggtgatgacagcaatgagagtatagagagctgcccaagtacaaaagc 118242 Query: 981 tccgaagcgagagtatgctcaatactcagcagcggagatgtcttctcggaataaaagata 1040 ||||||||| || ||| ||||| || ||||| |||||| | ||| | |||||||||| Sbjct: 118241 tccgaagcggaagcatggtcaattttctgcagctgagatgacgtctggaaataaaagatg 118182 Query: 1041 tagaagggaatacaatgaaggctattgctctggattgttgaacagaaatggtagctcttt 1100 |||||||||| | ||||| | | ||| || ||||| || ||| ||||| ||||||||| Sbjct: 118181 tagaagggaagataatgagagttcttgttcaggattattccacaaaaatgatagctcttt 118122 Query: 1101 ctttaactggatgtcatctctgactaatggatcaaccgtgtttgataaaactaccaccgc 1160 |||||||||||||||| |||| ||||||||| || ||||||||| ||||| || || Sbjct: 118121 ctttaactggatgtcaactctcactaatggagtaaaggtgtttgatgaaact---actgc 118065 Query: 1161 tgtttcactcaatcagaagttgtcag 1186 |||| |||| ||||||||||| |||| Sbjct: 118064 tgttccacttaatcagaagttttcag 118039 Score = 143 bits (72), Expect = 5e-30 Identities = 90/96 (93%) Strand = Plus / Minus Query: 2457 gcacactaccttagatggctttttcttgcgtctacgatttggtaaatgggaggaagcatt 2516 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 116182 gcacaccaccttagatggctttttcttgcgtctacgatttggtaaatgggaggaagcatt 116123 Query: 2517 gggtggcacaggataccatgtcgctcggataaatgg 2552 ||||||||| ||||| ||||| || |||||||||| Sbjct: 116122 gggtggcactggatatcatgttgccaggataaatgg 116087 Score = 129 bits (65), Expect = 7e-26 Identities = 139/163 (85%), Gaps = 3/163 (1%) Strand = Plus / Minus Query: 1784 ttaatgtggagaaggaattcaacagttcgcaatactttactagcacaggaagtgacaatg 1843 ||||||||||||||||||| |||| ||| |||||||||||||||| |||||||||||||| Sbjct: 117507 ttaatgtggagaaggaattaaacaattcacaatactttactagcaaaggaagtgacaatg 117448 Query: 1844 agacaacaagtagcaaatgcccggtgattcctccagaggaacataagcagtccgaaacaa 1903 | || |||||||||||||| ||| | |||| ||| ||| |||| | || ||||||| Sbjct: 117447 aaactacaagtagcaaatgtgcggcg---cctcaagacgaaaataaaccatcagaaacaa 117391 Query: 1904 tggcttccattcttgcaaagagattggatgcgcttagacatgc 1946 |||| || ||| |||| || ||||||||||||||||||||||| Sbjct: 117390 tggcatcaatttttgctaaaagattggatgcgcttagacatgc 117348 Score = 121 bits (61), Expect = 2e-23 Identities = 106/121 (87%) Strand = Plus / Minus Query: 418 gaaaaacaggcctattgtgcaactgctgtccataatgagagatcttgggcagataatacc 477 ||||||||||| | ||||||||| |||||||| |||| ||||||||||||| |||| | Sbjct: 118726 gaaaaacaggctttctgtgcaactactgtccatgatgaaagatcttgggcagctaatgct 118667 Query: 478 tggcgagctcgattagtaaatgcaatcagtcagagggactatgttttgccaaacaatgca 537 ||||| |||||||||||||| ||||| ||||||| ||||| |||||||||||| |||||| Sbjct: 118666 tggcgtgctcgattagtaaaagcaattagtcagaaggactctgttttgccaaagaatgca 118607 Query: 538 g 538 | Sbjct: 118606 g 118606 Score = 105 bits (53), Expect = 1e-18 Identities = 80/89 (89%) Strand = Plus / Minus Query: 2551 ggagcactggataggaatcggctctctgtaacgatcaggaattcaacctgccaagtagat 2610 |||| |||||||| |||||| || ||||| || |||||||||||||| |||||||||||| Sbjct: 115972 ggagtactggataagaatcgcctttctgtgaccatcaggaattcaacttgccaagtagat 115913 Query: 2611 tctcgttttgtatccaaccatggcttcca 2639 ||||| |||||||||||||||| |||||| Sbjct: 115912 tctcgctttgtatccaaccatgacttcca 115884 Score = 93.7 bits (47), Expect = 4e-15 Identities = 83/95 (87%) Strand = Plus / Minus Query: 2642 aggacgagctgaaggcgtggtggtctgctgccatgaagggtggctggaaactaccgtcga 2701 |||| ||||||||||| |||||||| |||||||||||| ||||||||||||| || ||| Sbjct: 115729 aggatgagctgaaggcatggtggtcagctgccatgaagagtggctggaaactgccttcgc 115670 Query: 2702 aagaagaacttagcaagaagctaagagaaagagag 2736 |||||||||| | | ||||||| ||||||||||| Sbjct: 115669 aagaagaactcaatacgaagctacgagaaagagag 115635 Score = 91.7 bits (46), Expect = 2e-14 Identities = 55/58 (94%) Strand = Plus / Minus Query: 1258 gttggcttcaattctctatttcaatctctttatagtcataacgttatgataacttcaa 1315 ||||||||||||||||| |||||||||||||||||||| || |||||||||||||||| Sbjct: 117967 gttggcttcaattctctttttcaatctctttatagtcagaatgttatgataacttcaa 117910 Score = 58.0 bits (29), Expect = 2e-04 Identities = 47/53 (88%) Strand = Plus / Minus Query: 2303 caaattccatggagagtctgccacataacaagcaaattgtaccttatagtatt 2355 ||||||||||||||| || |||| ||||||| ||||| ||||||||| ||||| Sbjct: 116985 caaattccatggagaatcagccagataacaaacaaatggtaccttatggtatt 116933 Score = 56.0 bits (28), Expect = 8e-04 Identities = 40/44 (90%) Strand = Plus / Minus Query: 2096 tagttttgtggtcgggtgacaaaggtaaggaacaattatatcct 2139 ||||||| ||| | ||||||||||||||||||||||||| |||| Sbjct: 117192 tagttttatggacaggtgacaaaggtaaggaacaattatctcct 117149 Score = 56.0 bits (28), Expect = 8e-04 Identities = 52/60 (86%) Strand = Plus / Minus Query: 1405 ggcagagaaactcttgatgtggctgttgggaatttagctgctggcagccttcaaatggat 1464 ||||||||||||||| |||||||| || || ||||||||| ||||| ||||||||||| Sbjct: 117826 ggcagagaaactcttaatgtggctactgagactttagctgcgggcagaattcaaatggat 117767 Score = 52.0 bits (26), Expect = 0.013 Identities = 50/58 (86%) Strand = Plus / Minus Query: 2378 caagtgttgtttttggagccttacaaaggcttcgtttgcctcgatcagatatcataag 2435 ||||||| |||||||||||||| || ||||| |||||| |||| || ||||| ||||| Sbjct: 116907 caagtgtagtttttggagccttgcagaggctccgtttgtctcgctccgatataataag 116850
>gb|AY111400.1| Zea mays CL3532_1 mRNA sequence Length = 1393 Score = 157 bits (79), Expect = 3e-34 Identities = 184/221 (83%) Strand = Plus / Minus Query: 2395 gccttacaaaggcttcgtttgcctcgatcagatatcataagatggttgacgtcaccaata 2454 |||||||| |||||||| || | || ||||||||| |||||||| ||| ||||| || Sbjct: 728 gccttacataggcttcgcctgtcccgctcagatatcttaagatggctgagatcaccgatc 669 Query: 2455 cagcacactaccttagatggctttttcttgcgtctacgatttggtaaatgggaggaagca 2514 ||||||||| ||||||||| | || || |||||||||||||||||||||||| Sbjct: 668 atgcacactacgttagatggcnnnnnngtccgactgcgatttggtaaatgggaggaagca 609 Query: 2515 ttgggtggcacaggataccatgtcgctcggataaatggagcactggataggaatcggctc 2574 ||||||||||||||||||||||| || || | ||||||||||| ||||||| ||| || Sbjct: 608 ttgggtggcacaggataccatgttgcccgcctgaatggagcacttgataggagtcgcctt 549 Query: 2575 tctgtaacgatcaggaattcaacctgccaagtagattctcg 2615 |||||||| ||||| ||||||||||| |||||||||||||| Sbjct: 548 tctgtaaccatcagaaattcaacctgtcaagtagattctcg 508 Score = 85.7 bits (43), Expect = 9e-13 Identities = 86/102 (84%) Strand = Plus / Minus Query: 1873 cctccagaggaacataagcagtccgaaacaatggcttccattcttgcaaagagattggat 1932 ||||||||||||| |||||| || |||||||||||||| ||||||||||||||| Sbjct: 1244 cctccagaggaacctaagcaatctgaaacaatggcttctgnnnnngcaaagagattggat 1185 Query: 1933 gcgcttagacatgcgaagacctctgcaattaggttggctatc 1974 || ||||||||||| || ||||||||| | || ||||||||| Sbjct: 1184 gcacttagacatgcaaacacctctgcagtaagcttggctatc 1143 Score = 83.8 bits (42), Expect = 4e-12 Identities = 63/70 (90%) Strand = Plus / Minus Query: 2642 aggacgagctgaaggcgtggtggtctgctgccatgaagggtggctggaaactaccgtcga 2701 |||| ||||||||||| |||||||||||||| |||||||||| ||||| |||||||||| Sbjct: 481 aggatgagctgaaggcatggtggtctgctgctatgaagggtgagtggaagctaccgtcga 422 Query: 2702 aagaagaact 2711 | |||||||| Sbjct: 421 aggaagaact 412 Score = 44.1 bits (22), Expect = 3.2 Identities = 91/114 (79%) Strand = Plus / Minus Query: 2015 cttttgttattaattatagcagccatgatgggctagagacaggacagggaactcaaaaat 2074 |||||||| ||| ||| |||||||||||| ||||| ||||||| | || ||| |||| Sbjct: 1096 cttttgttgttagttacagcagccatgataaagtagaggcaggacatgaaaatcataaat 1037 Query: 2075 cttcgagtggtggtggaaggctagttttgtggtcgggtgacaaaggtaaggaac 2128 |||| ||||| |||||| ||||||||||| |||||||||| ||||||| Sbjct: 1036 cttctagtggaaatggaagaatagttttgtgggtaagtgacaaaggcaaggaac 983
>gb|AC116157.4| Homo sapiens chromosome 15, clone RP11-1006B19, complete sequence Length = 217659 Score = 52.0 bits (26), Expect = 0.013 Identities = 32/34 (94%) Strand = Plus / Plus Query: 1516 agagctggaagaaacttgaagatgactaactcca 1549 |||||||| |||||||||||||||||| |||||| Sbjct: 29893 agagctggtagaaacttgaagatgacttactcca 29926
>gb|AC022684.5|AC022684 Homo sapiens, clone RP11-59H18, complete sequence Length = 164879 Score = 52.0 bits (26), Expect = 0.013 Identities = 32/34 (94%) Strand = Plus / Plus Query: 1516 agagctggaagaaacttgaagatgactaactcca 1549 |||||||| |||||||||||||||||| |||||| Sbjct: 128632 agagctggtagaaacttgaagatgacttactcca 128665
>dbj|AK036184.1| Mus musculus 16 days neonate cerebellum cDNA, RIKEN full-length enriched library, clone:9630044I16 product:unclassifiable, full insert sequence Length = 2285 Score = 46.1 bits (23), Expect = 0.80 Identities = 26/27 (96%) Strand = Plus / Plus Query: 2701 aaagaagaacttagcaagaagctaaga 2727 |||||||||||||||| |||||||||| Sbjct: 794 aaagaagaacttagcaggaagctaaga 820
>emb|AL645607.9| Mouse DNA sequence from clone RP23-298N21 on chromosome 11, complete sequence Length = 124112 Score = 46.1 bits (23), Expect = 0.80 Identities = 26/27 (96%) Strand = Plus / Plus Query: 2701 aaagaagaacttagcaagaagctaaga 2727 |||||||||||||||| |||||||||| Sbjct: 5217 aaagaagaacttagcaggaagctaaga 5243
>gb|AC027123.7| Homo sapiens chromosome 3 clone RP11-392M7 map 3p, complete sequence Length = 191566 Score = 46.1 bits (23), Expect = 0.80 Identities = 26/27 (96%) Strand = Plus / Plus Query: 1516 agagctggaagaaacttgaagatgact 1542 ||||||||||||||||||||| ||||| Sbjct: 96116 agagctggaagaaacttgaaggtgact 96142
>gb|AC113265.25| Mus musculus strain C57BL/6J clone rp23-46k8 map 17, complete sequence Length = 143758 Score = 44.1 bits (22), Expect = 3.2 Identities = 22/22 (100%) Strand = Plus / Plus Query: 2195 gtggagggagcatgactgaaaa 2216 |||||||||||||||||||||| Sbjct: 53925 gtggagggagcatgactgaaaa 53946
>gb|AC129094.31| Mus musculus strain C57BL/6J clone rp23-306b23 map 17, complete sequence Length = 188078 Score = 44.1 bits (22), Expect = 3.2 Identities = 22/22 (100%) Strand = Plus / Minus Query: 2195 gtggagggagcatgactgaaaa 2216 |||||||||||||||||||||| Sbjct: 2259 gtggagggagcatgactgaaaa 2238
>gb|AC093450.20| Mus musculus strain C57BL/6J clone rp23-297j19 map 17, complete sequence Length = 202803 Score = 44.1 bits (22), Expect = 3.2 Identities = 22/22 (100%) Strand = Plus / Plus Query: 2195 gtggagggagcatgactgaaaa 2216 |||||||||||||||||||||| Sbjct: 32093 gtggagggagcatgactgaaaa 32114
>gb|AC165442.1| Mus musculus BAC clone RP23-164P21 from chromosome 10, complete sequence Length = 209583 Score = 44.1 bits (22), Expect = 3.2 Identities = 22/22 (100%) Strand = Plus / Minus Query: 1417 cttgatgtggctgttgggaatt 1438 |||||||||||||||||||||| Sbjct: 187913 cttgatgtggctgttgggaatt 187892
>gb|AE010294.1| Pyrococcus furiosus DSM 3638, section 169 of 173 of the complete genome Length = 12888 Score = 44.1 bits (22), Expect = 3.2 Identities = 22/22 (100%) Strand = Plus / Plus Query: 702 taatggtaatcaccaagatcat 723 |||||||||||||||||||||| Sbjct: 954 taatggtaatcaccaagatcat 975
>gb|AC079880.6| Homo sapiens BAC clone RP11-453E17 from 4, complete sequence Length = 166862 Score = 44.1 bits (22), Expect = 3.2 Identities = 22/22 (100%) Strand = Plus / Plus Query: 1510 cctttgagagctggaagaaact 1531 |||||||||||||||||||||| Sbjct: 133761 cctttgagagctggaagaaact 133782
>emb|X67205.1|PWFUSG P.woesei FUS gene for translational elongation factor 2 Length = 2767 Score = 44.1 bits (22), Expect = 3.2 Identities = 22/22 (100%) Strand = Plus / Plus Query: 702 taatggtaatcaccaagatcat 723 |||||||||||||||||||||| Sbjct: 954 taatggtaatcaccaagatcat 975 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 606,081,338 Number of extensions: 32798939 Number of successful extensions: 184547 Number of sequences better than 10.0: 18 Number of HSP's gapped: 184538 Number of HSP's successfully gapped: 61 Length of query: 3246 Length of database: 18,610,659,111 Length adjustment: 24 Effective length of query: 3222 Effective length of database: 18,499,340,271 Effective search space: 59604874353162 Effective search space used: 59604874353162 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 15 (30.2 bits)
