ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf23m05 |
|---|---|
| Clone Library Name | barley_pub |
>LOC_Os07g48244:12007.t004668:unspliced-genomic ubiquinol-cytochrome c reductase complex 6.7 kDa protein, putative,| expressed Length = 2216 Score = 47.8 bits (98), Expect(5) = 2e-20 Identities = 20/22 (90%), Positives = 21/22 (95%) Frame = -2 / -3 Query: 246 THASGSGFSKKVFLIQSNGWTR 181 T+ASGSGFSKKVFLIQSNG TR Sbjct: 1839 TYASGSGFSKKVFLIQSNGCTR 1774 Score = 42.8 bits (87), Expect(5) = 2e-20 Identities = 17/24 (70%), Positives = 18/24 (75%) Frame = -2 / -2 Query: 189 WTR*MAALPAATPQVARAVTSAGW 118 WTR*MAA+PA TPQVA A S W Sbjct: 229 WTR*MAAVPAKTPQVAAAAMSVDW 158 Score = 36.8 bits (74), Expect(5) = 2e-20 Identities = 13/19 (68%), Positives = 16/19 (84%) Frame = -2 / -2 Query: 357 NQTREHEGLVYYWLGHPNS 301 NQTREH+ L+YY GHP+S Sbjct: 1963 NQTREHDCLLYYLQGHPSS 1907 Score = 25.8 bits (50), Expect(5) = 2e-20 Identities = 9/10 (90%), Positives = 9/10 (90%) Frame = -3 / -3 Query: 77 TPGEPSPPLI 48 TPGEPSPP I Sbjct: 114 TPGEPSPPQI 85 Score = 21.7 bits (41), Expect(5) = 2e-20 Identities = 6/9 (66%), Positives = 8/9 (88%) Frame = -3 / -1 Query: 302 QNHPGNVRI 276 +NHPGNV + Sbjct: 1898 RNHPGNVNV 1872 Score = 57.9 bits (120), Expect(3) = 2e-16 Identities = 22/23 (95%), Positives = 23/23 (100%) Frame = +2 / +2 Query: 179 YLVQPFDWIKKTFFEKPEPEA*V 247 +LVQPFDWIKKTFFEKPEPEA*V Sbjct: 1772 FLVQPFDWIKKTFFEKPEPEA*V 1840 Score = 40.9 bits (83), Expect(3) = 2e-16 Identities = 15/19 (78%), Positives = 17/19 (89%) Frame = +3 / +1 Query: 303 SLDDPANNIQDPRVPLFDF 359 +LDDPANNI+D VPLFDF Sbjct: 1909 NLDDPANNIKDSHVPLFDF 1965 Score = 28.1 bits (55), Expect(3) = 2e-16 Identities = 10/18 (55%), Positives = 12/18 (66%) Frame = +1 / +2 Query: 28 RKANETRISGGDGSPGVQ 81 R + I GGDGSPGV+ Sbjct: 65 RSSRRDEICGGDGSPGVE 118 Score = 46.0 bits (94), Expect(3) = 4e-09 Identities = 20/39 (51%), Positives = 24/39 (61%) Frame = +2 / +3 Query: 119 QPADVTALATWGVAAGSAAIYLVQPFDWIKKTFFEKPEP 235 Q D+ A ATWGV AG+AAIYLVQ + + F P P Sbjct: 159 QSTDIAAAATWGVFAGTAAIYLVQVRGFDPRRLFIPPPP 275 Score = 32.2 bits (64), Expect(3) = 4e-09 Identities = 12/17 (70%), Positives = 14/17 (82%) Frame = +1 / +2 Query: 307 WMTQPIIYKTLVFPCLI 357 WMT II KT++FPCLI Sbjct: 1913 WMTLQII*KTVMFPCLI 1963 Score = 23.1 bits (44), Expect(3) = 4e-09 Identities = 8/8 (100%), Positives = 8/8 (100%) Frame = +3 / +1 Query: 54 RRRWLSRR 77 RRRWLSRR Sbjct: 91 RRRWLSRR 114 Score = 38.6 bits (78), Expect(3) = 2e-06 Identities = 12/17 (70%), Positives = 14/17 (82%) Frame = -1 / -2 Query: 241 CLWLGLLEEGFLDPVKW 191 CLW G L+E FL+PVKW Sbjct: 1834 CLWFGFLKESFLNPVKW 1784 Score = 29.0 bits (57), Expect(3) = 2e-06 Identities = 15/31 (48%), Positives = 17/31 (54%) Frame = -3 / -3 Query: 359 KIKQGNTRVLYIIGWVIQTQNHPGNVRIKSC 267 KIKQGN V YII VIQ + R + C Sbjct: 1965 KIKQGNMTVFYIICRVIQVLFTQKSSRKRKC 1873 Score = 24.0 bits (46), Expect(3) = 2e-06 Identities = 10/11 (90%), Positives = 11/11 (100%) Frame = -2 / -2 Query: 81 LDAGRAIAAAD 49 LDAGRAIAAA+ Sbjct: 118 LDAGRAIAAAN 86 Score = 31.3 bits (62), Expect = 4.5 Identities = 14/19 (73%), Positives = 15/19 (78%) Frame = +2 / +3 Query: 302 EFG*PSQ*YTRPSCSLV*F 358 E G*P +*Y R SCSLV*F Sbjct: 1908 ELG*PCK*YKRQSCSLV*F 1964
>LOC_Os11g11810:12011.t01068:unspliced-genomic NBS-LRR disease resistance protein, putative, expressed| Length = 7174 Score = 31.8 bits (63), Expect = 3.3 Identities = 11/22 (50%), Positives = 15/22 (68%) Frame = -1 / +1 Query: 295 ILEMYASKVAAMHAHKHSCLWL 230 IL MY A MHAH H+C+++ Sbjct: 5077 ILCMYVCMHACMHAHTHTCMYI 5142
>LOC_Os09g03420:12009.t00239:unspliced-genomic retrotransposon protein, putative, Ty3-gypsy subclass| Length = 5955 Score = 31.8 bits (63), Expect = 3.3 Identities = 13/30 (43%), Positives = 16/30 (53%) Frame = -2 / +2 Query: 321 WLGHPNSESSWKCTHQKLQPCTPISTHASG 232 W +P S S WKC+ + L PC P SG Sbjct: 3038 WKIYP*SASIWKCSPKTLLPCHPRERLNSG 3127
>LOC_Os01g04814:12001.t00369:unspliced-genomic vacuolar sorting protein 4b, putative, expressed| Length = 7252 Score = 31.8 bits (63), Expect = 3.3 Identities = 10/25 (40%), Positives = 13/25 (52%) Frame = -2 / +3 Query: 327 YYWLGHPNSESSWKCTHQKLQPCTP 253 +YW HP ++ C HQ QP P Sbjct: 3183 HYWSQHPGVDAVTNCVHQLAQPNAP 3257
>LOC_Os01g14830:12001.t01338:unspliced-genomic 50S ribosomal protein L3-2, chloroplast precursor, putative,| expressed Length = 4860 Score = 31.3 bits (62), Expect = 4.5 Identities = 12/30 (40%), Positives = 17/30 (56%) Frame = -3 / -3 Query: 413 PSHGEGYMQRNRKPTSGWKIKQGNTRVLYI 324 P G + RN KP+ W+I+ NT + YI Sbjct: 4825 PIKGYCLVSRNTKPSLNWRIQNCNTMLTYI 4736
>LOC_Os02g17360:12002.t01529:unspliced-genomic expressed protein| Length = 4409 Score = 31.3 bits (62), Expect = 4.5 Identities = 15/46 (32%), Positives = 26/46 (56%) Frame = -1 / -1 Query: 406 MARVTCNATGNLHLDGKSNKGTRGSCILLAGSSKLRIILEMYASKV 269 +++ TC GN+ + K+N GT +CI A + + +E Y+ KV Sbjct: 2315 LSQYTCLTQGNMLMAKKANVGTIHNCIKRAMLFQPFLNIEKYSEKV 2178
>LOC_Os01g56040:12001.t05013:unspliced-genomic AN1-like Zinc finger family protein| Length = 2404 Score = 31.3 bits (62), Expect = 4.5 Identities = 11/21 (52%), Positives = 14/21 (66%) Frame = +1 / +3 Query: 421 HVSLFFVTEKRNCACVQKKKK 483 HVS F+T +NC CV K +K Sbjct: 264 HVSFIFLTGLKNCPCVTKGRK 326
>LOC_Os06g46000:12006.t04288:unspliced-genomic tubulin beta-3 chain, putative, expressed| Length = 2624 Score = 30.9 bits (61), Expect = 6.2 Identities = 11/25 (44%), Positives = 16/25 (64%) Frame = -2 / +2 Query: 477 FFLNTSTVSFLCDEK*TYMIIPLPW 403 FF S S+LC+ + Y++ PLPW Sbjct: 1571 FFSR*SQPSYLCNNEWCYLLPPLPW 1645
>LOC_Os03g51100:12003.t04440:unspliced-genomic hypothetical protein| Length = 1003 Score = 30.9 bits (61), Expect = 6.2 Identities = 9/20 (45%), Positives = 13/20 (65%) Frame = -2 / -3 Query: 423 MIIPLPWRGLHATQQETYIW 364 +++PLPW G+ AT E W Sbjct: 236 VVVPLPWAGVGATSDERRAW 177
>LOC_Os09g25490:12009.t02228:unspliced-genomic CESA9 - cellulose synthase, expressed| Length = 4643 Score = 30.4 bits (60), Expect = 8.6 Identities = 9/19 (47%), Positives = 13/19 (68%) Frame = -2 / +3 Query: 366 WMENQTREHEGLVYYWLGH 310 W N TR+H G++ +LGH Sbjct: 2052 WPGNNTRDHPGMIQVFLGH 2108
>LOC_Os08g12830:12008.t01161:unspliced-genomic ethanolamine-phosphate cytidylyltransferase, putative, expressed| Length = 4627 Score = 30.4 bits (60), Expect = 8.6 Identities = 14/49 (28%), Positives = 23/49 (46%) Frame = +1 / -1 Query: 298 F*VWMTQPIIYKTLVFPCLIFHPDVGFLLRCM*PSPWEGNDHVSLFFVT 444 F + ++ ++ + + C FH FLL C * PW +H S +T Sbjct: 2746 FIICISSSVLIDSNICICGSFHTASFFLLECQ*YPPWVEKEHSSHIKIT 2600 Database: tigr.seq.out Posted date: Jul 20, 2007 8:58 AM Number of letters in database: 166,841,660 Number of sequences in database: 56,278 Lambda K H 0.318 0.134 0.401 Matrix: BLOSUM62 Number of Sequences: 56278 Number of Hits to DB: 171,179,824 Number of extensions: 2518110 Number of successful extensions: 10621 Number of sequences better than 10.0: 11 Length of query: 161 Length of database: 55,613,886 Length adjustment: 47 Effective length of query: 114 Effective length of database: 52,968,820 Effective search space: 6038445480 Effective search space used: 6038445480 Neighboring words threshold: 13 Window for multiple hits: 40 X1: 16 ( 7.3 bits)
