| Clone Name | FLbaf23m05 |
|---|---|
| Clone Library Name | barley_pub |
>emb|CT829799.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN036N09, full insert sequence Length = 652 Score = 170 bits (86), Expect = 3e-39 Identities = 168/193 (87%), Gaps = 3/193 (1%) Strand = Plus / Plus Query: 53 gcggcggcgatggctctcccggcgtccagctccaccctctcccgcttc--ctctcctcc- 109 |||||||||||||||||||||||||| |||||| ||||| ||||||| |||||| | Sbjct: 83 gcggcggcgatggctctcccggcgtcgagctccggcctcttccgcttcatctctccacgg 142 Query: 110 cgccgcatccagcccgccgacgtcaccgccctcgccacctggggcgtcgccgccggcagc 169 |||||| |||| || ||||| || ||||| |||||||||||||||| |||||||| | Sbjct: 143 cgccgcccccagtccaccgacatcgccgccgccgccacctggggcgtcttcgccggcacc 202 Query: 170 gccgccatctacctcgtccagccatttgactggatcaagaaaaccttcttcgagaagccc 229 ||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||| ||| Sbjct: 203 gccgccatctacctcgtccagccatttgactggattaagaaaactttctttgagaaaccc 262 Query: 230 gagccagaggcat 242 || |||||||||| Sbjct: 263 gaaccagaggcat 275 Score = 60.0 bits (30), Expect = 8e-06 Identities = 48/54 (88%) Strand = Plus / Plus Query: 306 ttggatgacccagccaataatatacaagaccctcgtgttcccttgtttgatttt 359 ||||||||||| || ||||||||| ||||| || ||||||||||||||||||| Sbjct: 352 ttggatgaccctgcaaataatataaaagacagtcatgttcccttgtttgatttt 405
>emb|CT829798.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA017C06, full insert sequence Length = 546 Score = 170 bits (86), Expect = 3e-39 Identities = 168/193 (87%), Gaps = 3/193 (1%) Strand = Plus / Plus Query: 53 gcggcggcgatggctctcccggcgtccagctccaccctctcccgcttc--ctctcctcc- 109 |||||||||||||||||||||||||| |||||| ||||| ||||||| |||||| | Sbjct: 56 gcggcggcgatggctctcccggcgtcgagctccggcctcttccgcttcatctctccacgg 115 Query: 110 cgccgcatccagcccgccgacgtcaccgccctcgccacctggggcgtcgccgccggcagc 169 |||||| |||| || ||||| || ||||| |||||||||||||||| |||||||| | Sbjct: 116 cgccgcccccagtccaccgacatcgccgccgccgccacctggggcgtcttcgccggcacc 175 Query: 170 gccgccatctacctcgtccagccatttgactggatcaagaaaaccttcttcgagaagccc 229 ||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||| ||| Sbjct: 176 gccgccatctacctcgtccagccatttgactggattaagaaaactttctttgagaaaccc 235 Query: 230 gagccagaggcat 242 || |||||||||| Sbjct: 236 gaaccagaggcat 248 Score = 60.0 bits (30), Expect = 8e-06 Identities = 48/54 (88%) Strand = Plus / Plus Query: 306 ttggatgacccagccaataatatacaagaccctcgtgttcccttgtttgatttt 359 ||||||||||| || ||||||||| ||||| || ||||||||||||||||||| Sbjct: 325 ttggatgaccctgcaaataatataaaagacagtcatgttcccttgtttgatttt 378
>ref|NM_001067179.1| Oryza sativa (japonica cultivar-group) Os07g0680300 (Os07g0680300) mRNA, complete cds Length = 526 Score = 170 bits (86), Expect = 3e-39 Identities = 168/193 (87%), Gaps = 3/193 (1%) Strand = Plus / Plus Query: 53 gcggcggcgatggctctcccggcgtccagctccaccctctcccgcttc--ctctcctcc- 109 |||||||||||||||||||||||||| |||||| ||||| ||||||| |||||| | Sbjct: 51 gcggcggcgatggctctcccggcgtcgagctccggcctcttccgcttcatctctccacgg 110 Query: 110 cgccgcatccagcccgccgacgtcaccgccctcgccacctggggcgtcgccgccggcagc 169 |||||| |||| || ||||| || ||||| |||||||||||||||| |||||||| | Sbjct: 111 cgccgcccccagtccaccgacatcgccgccgccgccacctggggcgtcttcgccggcacc 170 Query: 170 gccgccatctacctcgtccagccatttgactggatcaagaaaaccttcttcgagaagccc 229 ||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||| ||| Sbjct: 171 gccgccatctacctcgtccagccatttgactggattaagaaaactttctttgagaaaccc 230 Query: 230 gagccagaggcat 242 || |||||||||| Sbjct: 231 gaaccagaggcat 243 Score = 60.0 bits (30), Expect = 8e-06 Identities = 48/54 (88%) Strand = Plus / Plus Query: 306 ttggatgacccagccaataatatacaagaccctcgtgttcccttgtttgatttt 359 ||||||||||| || ||||||||| ||||| || ||||||||||||||||||| Sbjct: 320 ttggatgaccctgcaaataatataaaagacagtcatgttcccttgtttgatttt 373
>dbj|AK063800.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-121-F07, full insert sequence Length = 526 Score = 170 bits (86), Expect = 3e-39 Identities = 168/193 (87%), Gaps = 3/193 (1%) Strand = Plus / Plus Query: 53 gcggcggcgatggctctcccggcgtccagctccaccctctcccgcttc--ctctcctcc- 109 |||||||||||||||||||||||||| |||||| ||||| ||||||| |||||| | Sbjct: 51 gcggcggcgatggctctcccggcgtcgagctccggcctcttccgcttcatctctccacgg 110 Query: 110 cgccgcatccagcccgccgacgtcaccgccctcgccacctggggcgtcgccgccggcagc 169 |||||| |||| || ||||| || ||||| |||||||||||||||| |||||||| | Sbjct: 111 cgccgcccccagtccaccgacatcgccgccgccgccacctggggcgtcttcgccggcacc 170 Query: 170 gccgccatctacctcgtccagccatttgactggatcaagaaaaccttcttcgagaagccc 229 ||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||| ||| Sbjct: 171 gccgccatctacctcgtccagccatttgactggattaagaaaactttctttgagaaaccc 230 Query: 230 gagccagaggcat 242 || |||||||||| Sbjct: 231 gaaccagaggcat 243 Score = 60.0 bits (30), Expect = 8e-06 Identities = 48/54 (88%) Strand = Plus / Plus Query: 306 ttggatgacccagccaataatatacaagaccctcgtgttcccttgtttgatttt 359 ||||||||||| || ||||||||| ||||| || ||||||||||||||||||| Sbjct: 320 ttggatgaccctgcaaataatataaaagacagtcatgttcccttgtttgatttt 373
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7 Length = 29644043 Score = 107 bits (54), Expect = 4e-20 Identities = 121/141 (85%), Gaps = 3/141 (2%) Strand = Plus / Minus Query: 53 gcggcggcgatggctctcccggcgtccagctccaccctctcccgcttc--ctctcctcc- 109 |||||||||||||||||||||||||| |||||| ||||| ||||||| |||||| | Sbjct: 28770373 gcggcggcgatggctctcccggcgtcgagctccggcctcttccgcttcatctctccacgg 28770314 Query: 110 cgccgcatccagcccgccgacgtcaccgccctcgccacctggggcgtcgccgccggcagc 169 |||||| |||| || ||||| || ||||| |||||||||||||||| |||||||| | Sbjct: 28770313 cgccgcccccagtccaccgacatcgccgccgccgccacctggggcgtcttcgccggcacc 28770254 Query: 170 gccgccatctacctcgtccag 190 ||||||||||||||||||||| Sbjct: 28770253 gccgccatctacctcgtccag 28770233 Score = 69.9 bits (35), Expect = 8e-09 Identities = 50/55 (90%) Strand = Plus / Minus Query: 188 cagccatttgactggatcaagaaaaccttcttcgagaagcccgagccagaggcat 242 ||||||||||||||||| |||||||| ||||| ||||| ||||| |||||||||| Sbjct: 28768682 cagccatttgactggattaagaaaactttctttgagaaacccgaaccagaggcat 28768628 Score = 60.0 bits (30), Expect = 8e-06 Identities = 48/54 (88%) Strand = Plus / Minus Query: 306 ttggatgacccagccaataatatacaagaccctcgtgttcccttgtttgatttt 359 ||||||||||| || ||||||||| ||||| || ||||||||||||||||||| Sbjct: 28768551 ttggatgaccctgcaaataatataaaagacagtcatgttcccttgtttgatttt 28768498 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 154 cgtcgccgccggcagcgccgccatc 178 ||||||| ||||||||||||||||| Sbjct: 15692043 cgtcgcctccggcagcgccgccatc 15692067
>dbj|AP005099.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0008J01 Length = 159900 Score = 107 bits (54), Expect = 4e-20 Identities = 121/141 (85%), Gaps = 3/141 (2%) Strand = Plus / Minus Query: 53 gcggcggcgatggctctcccggcgtccagctccaccctctcccgcttc--ctctcctcc- 109 |||||||||||||||||||||||||| |||||| ||||| ||||||| |||||| | Sbjct: 28059 gcggcggcgatggctctcccggcgtcgagctccggcctcttccgcttcatctctccacgg 28000 Query: 110 cgccgcatccagcccgccgacgtcaccgccctcgccacctggggcgtcgccgccggcagc 169 |||||| |||| || ||||| || ||||| |||||||||||||||| |||||||| | Sbjct: 27999 cgccgcccccagtccaccgacatcgccgccgccgccacctggggcgtcttcgccggcacc 27940 Query: 170 gccgccatctacctcgtccag 190 ||||||||||||||||||||| Sbjct: 27939 gccgccatctacctcgtccag 27919 Score = 69.9 bits (35), Expect = 8e-09 Identities = 50/55 (90%) Strand = Plus / Minus Query: 188 cagccatttgactggatcaagaaaaccttcttcgagaagcccgagccagaggcat 242 ||||||||||||||||| |||||||| ||||| ||||| ||||| |||||||||| Sbjct: 26368 cagccatttgactggattaagaaaactttctttgagaaacccgaaccagaggcat 26314 Score = 60.0 bits (30), Expect = 8e-06 Identities = 48/54 (88%) Strand = Plus / Minus Query: 306 ttggatgacccagccaataatatacaagaccctcgtgttcccttgtttgatttt 359 ||||||||||| || ||||||||| ||||| || ||||||||||||||||||| Sbjct: 26237 ttggatgaccctgcaaataatataaaagacagtcatgttcccttgtttgatttt 26184
>dbj|AP005243.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1205_F02 Length = 112862 Score = 107 bits (54), Expect = 4e-20 Identities = 121/141 (85%), Gaps = 3/141 (2%) Strand = Plus / Minus Query: 53 gcggcggcgatggctctcccggcgtccagctccaccctctcccgcttc--ctctcctcc- 109 |||||||||||||||||||||||||| |||||| ||||| ||||||| |||||| | Sbjct: 77934 gcggcggcgatggctctcccggcgtcgagctccggcctcttccgcttcatctctccacgg 77875 Query: 110 cgccgcatccagcccgccgacgtcaccgccctcgccacctggggcgtcgccgccggcagc 169 |||||| |||| || ||||| || ||||| |||||||||||||||| |||||||| | Sbjct: 77874 cgccgcccccagtccaccgacatcgccgccgccgccacctggggcgtcttcgccggcacc 77815 Query: 170 gccgccatctacctcgtccag 190 ||||||||||||||||||||| Sbjct: 77814 gccgccatctacctcgtccag 77794 Score = 69.9 bits (35), Expect = 8e-09 Identities = 50/55 (90%) Strand = Plus / Minus Query: 188 cagccatttgactggatcaagaaaaccttcttcgagaagcccgagccagaggcat 242 ||||||||||||||||| |||||||| ||||| ||||| ||||| |||||||||| Sbjct: 76243 cagccatttgactggattaagaaaactttctttgagaaacccgaaccagaggcat 76189 Score = 60.0 bits (30), Expect = 8e-06 Identities = 48/54 (88%) Strand = Plus / Minus Query: 306 ttggatgacccagccaataatatacaagaccctcgtgttcccttgtttgatttt 359 ||||||||||| || ||||||||| ||||| || ||||||||||||||||||| Sbjct: 76112 ttggatgaccctgcaaataatataaaagacagtcatgttcccttgtttgatttt 76059
>gb|DQ244805.1| Zea mays clone 10879 mRNA sequence Length = 540 Score = 105 bits (53), Expect = 1e-19 Identities = 89/101 (88%) Strand = Plus / Plus Query: 142 cgccacctggggcgtcgccgccggcagcgccgccatctacctcgtccagccatttgactg 201 |||| ||||||| ||| |||||||| ||||| | ||||||||||||||||||||||||| Sbjct: 152 cgcctcctggggagtcttcgccggcaccgccggcctctacctcgtccagccatttgactg 211 Query: 202 gatcaagaaaaccttcttcgagaagcccgagccagaggcat 242 ||| |||||||| ||||||||||| ||| | |||||||||| Sbjct: 212 gattaagaaaactttcttcgagaaaccccaaccagaggcat 252 Score = 61.9 bits (31), Expect = 2e-06 Identities = 49/55 (89%) Strand = Plus / Plus Query: 52 agcggcggcgatggctctcccggcgtccagctccaccctctcccgcttcctctcc 106 ||||||||||||||| ||||||||||| |||||| ||||| ||||||| ||||| Sbjct: 59 agcggcggcgatggcactcccggcgtcgagctccggcctcttccgcttcgtctcc 113
>gb|BT018595.1| Zea mays clone EL01N0447G11.d mRNA sequence Length = 1375 Score = 95.6 bits (48), Expect = 1e-16 Identities = 75/84 (89%) Strand = Plus / Plus Query: 142 cgccacctggggcgtcgccgccggcagcgccgccatctacctcgtccagccatttgactg 201 |||| ||||||| ||| |||||||| ||||| | ||||||||||||||||||||||||| Sbjct: 992 cgcctcctggggagtcttcgccggcaccgccggcctctacctcgtccagccatttgactg 1051 Query: 202 gatcaagaaaaccttcttcgagaa 225 ||| |||||||| ||||||||||| Sbjct: 1052 gattaagaaaactttcttcgagaa 1075 Score = 60.0 bits (30), Expect = 8e-06 Identities = 48/54 (88%) Strand = Plus / Plus Query: 53 gcggcggcgatggctctcccggcgtccagctccaccctctcccgcttcctctcc 106 |||||||||||||| ||||||||||| |||||| ||||| ||||||| ||||| Sbjct: 900 gcggcggcgatggcactcccggcgtcgagctccggcctcttccgcttcgtctcc 953
>gb|AY106645.1| Zea mays PCO122145 mRNA sequence Length = 614 Score = 95.6 bits (48), Expect = 1e-16 Identities = 75/84 (89%) Strand = Plus / Plus Query: 142 cgccacctggggcgtcgccgccggcagcgccgccatctacctcgtccagccatttgactg 201 |||| ||||||| ||| |||||||| ||||| | ||||||||||||||||||||||||| Sbjct: 152 cgcctcctggggagtcttcgccggcaccgccggcctctacctcgtccagccatttgactg 211 Query: 202 gatcaagaaaaccttcttcgagaa 225 ||| |||||||| ||||||||||| Sbjct: 212 gattaagaaaactttcttcgagaa 235 Score = 61.9 bits (31), Expect = 2e-06 Identities = 49/55 (89%) Strand = Plus / Plus Query: 52 agcggcggcgatggctctcccggcgtccagctccaccctctcccgcttcctctcc 106 ||||||||||||||| ||||||||||| |||||| ||||| ||||||| ||||| Sbjct: 59 agcggcggcgatggcactcccggcgtcgagctccggcctcttccgcttcgtctcc 113
>gb|DQ245824.1| Zea mays clone 20646 mRNA sequence Length = 547 Score = 87.7 bits (44), Expect = 3e-14 Identities = 86/100 (86%) Strand = Plus / Plus Query: 147 cctggggcgtcgccgccggcagcgccgccatctacctcgtccagccatttgactggatca 206 ||||||| ||| |||||||| ||||| | | |||||||||||||||||||||||||| | Sbjct: 153 cctggggagtcttcgccggcaccgccggcctttacctcgtccagccatttgactggatta 212 Query: 207 agaaaaccttcttcgagaagcccgagccagaggcatgagt 246 |||| || |||||| |||| || || |||||||||||||| Sbjct: 213 agaagactttcttccagaaacctgaaccagaggcatgagt 252 Score = 63.9 bits (32), Expect = 5e-07 Identities = 53/60 (88%) Strand = Plus / Plus Query: 53 gcggcggcgatggctctcccggcgtccagctccaccctctcccgcttcctctcctcccgc 112 |||||||||||||| ||||||||||| |||||| ||||| ||||||| ||||| ||||| Sbjct: 56 gcggcggcgatggcactcccggcgtcaagctccggcctcttccgcttcgtctccccccgc 115
>gb|AY108070.1| Zea mays PCO122146 mRNA sequence Length = 536 Score = 87.7 bits (44), Expect = 3e-14 Identities = 86/100 (86%) Strand = Plus / Plus Query: 147 cctggggcgtcgccgccggcagcgccgccatctacctcgtccagccatttgactggatca 206 ||||||| ||| |||||||| ||||| | | |||||||||||||||||||||||||| | Sbjct: 136 cctggggagtcttcgccggcaccgccggcctttacctcgtccagccatttgactggatta 195 Query: 207 agaaaaccttcttcgagaagcccgagccagaggcatgagt 246 |||| || |||||| |||| || || |||||||||||||| Sbjct: 196 agaagactttcttccagaaacctgaaccagaggcatgagt 235 Score = 63.9 bits (32), Expect = 5e-07 Identities = 53/60 (88%) Strand = Plus / Plus Query: 53 gcggcggcgatggctctcccggcgtccagctccaccctctcccgcttcctctcctcccgc 112 |||||||||||||| ||||||||||| |||||| ||||| ||||||| ||||| ||||| Sbjct: 39 gcggcggcgatggcactcccggcgtcaagctccggcctcttccgcttcgtctccccccgc 98
>gb|AY107678.1| Zea mays PCO122144 mRNA sequence Length = 655 Score = 61.9 bits (31), Expect = 2e-06 Identities = 49/55 (89%) Strand = Plus / Plus Query: 52 agcggcggcgatggctctcccggcgtccagctccaccctctcccgcttcctctcc 106 ||||||||||||||| ||||||||||| |||||| ||||| ||||||| ||||| Sbjct: 64 agcggcggcgatggcactcccggcgtcgagctccggcctcttccgcttcgtctcc 118 Score = 42.1 bits (21), Expect = 1.8 Identities = 42/49 (85%) Strand = Plus / Plus Query: 142 cgccacctggggcgtcgccgccggcagcgccgccatctacctcgtccag 190 |||| ||||||| ||| |||||||| ||||| | |||||||||||||| Sbjct: 157 cgcctcctggggagtcttcgccggcaccgccggcctctacctcgtccag 205
>emb|CT987996.1| partial cDNA sequence from a Lambda ZAP II normalized full-length cDNA library of differentiating xylem from Eucalyptus gunnii Length = 410 Score = 48.1 bits (24), Expect = 0.029 Identities = 42/48 (87%) Strand = Plus / Plus Query: 187 ccagccatttgactggatcaagaaaaccttcttcgagaagcccgagcc 234 |||||||||||| ||| | |||||||| ||||||||||| || ||||| Sbjct: 143 ccagccatttgattggttgaagaaaacgttcttcgagaaaccagagcc 190
>dbj|AB244817.1| Oryza sativa (japonica cultivar-group) ppr564 gene for pentatricopeptide repeat protein, complete cds Length = 1695 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Plus Query: 87 ccctctcccgcttcctctcctcc 109 ||||||||||||||||||||||| Sbjct: 119 ccctctcccgcttcctctcctcc 141
>emb|CT830176.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA047G22, full insert sequence Length = 1048 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Plus Query: 87 ccctctcccgcttcctctcctcc 109 ||||||||||||||||||||||| Sbjct: 191 ccctctcccgcttcctctcctcc 213
>emb|CT834643.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN019M01, full insert sequence Length = 1350 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Plus Query: 87 ccctctcccgcttcctctcctcc 109 ||||||||||||||||||||||| Sbjct: 194 ccctctcccgcttcctctcctcc 216
>ref|NM_001061543.1| Oryza sativa (japonica cultivar-group) Os05g0243200 (Os05g0243200) mRNA, complete cds Length = 1076 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Plus Query: 87 ccctctcccgcttcctctcctcc 109 ||||||||||||||||||||||| Sbjct: 206 ccctctcccgcttcctctcctcc 228
>gb|AC137606.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0004B23, complete sequence Length = 153136 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Minus Query: 87 ccctctcccgcttcctctcctcc 109 ||||||||||||||||||||||| Sbjct: 81465 ccctctcccgcttcctctcctcc 81443 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 87 ccctctcccgcttcctctcctccc 110 ||||||||||||||||||| |||| Sbjct: 76493 ccctctcccgcttcctctcgtccc 76470
>gb|AC137624.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0680F01, complete sequence Length = 156691 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Minus Query: 87 ccctctcccgcttcctctcctcc 109 ||||||||||||||||||||||| Sbjct: 4316 ccctctcccgcttcctctcctcc 4294
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5 Length = 29737217 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Minus Query: 87 ccctctcccgcttcctctcctcc 109 ||||||||||||||||||||||| Sbjct: 8595893 ccctctcccgcttcctctcctcc 8595871 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 87 ccctctcccgcttcctctcctccc 110 ||||||||||||||||||| |||| Sbjct: 8590921 ccctctcccgcttcctctcgtccc 8590898
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1 Length = 43261740 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Plus Query: 87 ccctctcccgcttcctctcctcc 109 ||||||||||||||||||||||| Sbjct: 38994142 ccctctcccgcttcctctcctcc 38994164 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 91 ctcccgcttcctctcctccc 110 |||||||||||||||||||| Sbjct: 41355855 ctcccgcttcctctcctccc 41355836
>dbj|AP003349.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0674H09 Length = 142955 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Plus Query: 87 ccctctcccgcttcctctcctcc 109 ||||||||||||||||||||||| Sbjct: 67775 ccctctcccgcttcctctcctcc 67797
>dbj|AP003418.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0506A10 Length = 145265 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Plus Query: 87 ccctctcccgcttcctctcctcc 109 ||||||||||||||||||||||| Sbjct: 12122 ccctctcccgcttcctctcctcc 12144
>dbj|AK066379.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013065N04, full insert sequence Length = 3789 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Plus Query: 87 ccctctcccgcttcctctcctcc 109 ||||||||||||||||||||||| Sbjct: 100 ccctctcccgcttcctctcctcc 122
>dbj|AK061317.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-302-D09, full insert sequence Length = 1076 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Plus Query: 87 ccctctcccgcttcctctcctcc 109 ||||||||||||||||||||||| Sbjct: 206 ccctctcccgcttcctctcctcc 228
>emb|AL139095.15| Human DNA sequence from clone RP11-69L16 on chromosome 6 Contains the 3' end of the RREB1 gene for ras responsive element binding protein 1, part of a novel gene, the SSR1 gene for signal sequence receptor alpha (translocon-associated protein alpha), the ATP5GP1 pseudogene (ATPsynthase, H+ transporting, mitochondrial F0 complex, subunit c (subunit 9)), a ribosomal protein S3 pseudogene, the CAGE1 gene for cancer antigen 1, the 5' end of the RIOK1 gene for RIO kinase 1 (yeast) and three CpG islands, complete sequence Length = 167206 Score = 44.1 bits (22), Expect = 0.45 Identities = 22/22 (100%) Strand = Plus / Plus Query: 88 cctctcccgcttcctctcctcc 109 |||||||||||||||||||||| Sbjct: 92398 cctctcccgcttcctctcctcc 92419
>emb|AL807770.17| Mouse DNA sequence from clone RP23-206L14 on chromosome 4, complete sequence Length = 114089 Score = 44.1 bits (22), Expect = 0.45 Identities = 22/22 (100%) Strand = Plus / Plus Query: 284 catttccaggatgattctgagt 305 |||||||||||||||||||||| Sbjct: 92652 catttccaggatgattctgagt 92673
>emb|AM238664.1| Streptomyces ambofaciens ATCC 23877 right chromosomal arm Length = 1367119 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 119 cagcccgccgacgtcaccgccctcg 143 |||||| |||||||||||||||||| Sbjct: 1350446 cagccctccgacgtcaccgccctcg 1350422
>emb|CT830666.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA109K02, full insert sequence Length = 1394 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 124 cgccgacgtcaccgccctcgccacc 148 ||||||| ||||||||||||||||| Sbjct: 515 cgccgacatcaccgccctcgccacc 539
>emb|CT827954.1| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0814G11, complete sequence Length = 125762 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 124 cgccgacgtcaccgccctcgccacc 148 ||||||| ||||||||||||||||| Sbjct: 18308 cgccgacatcaccgccctcgccacc 18284
>ref|NM_001060873.1| Oryza sativa (japonica cultivar-group) Os04g0688200 (Os04g0688200) mRNA, complete cds Length = 1412 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 124 cgccgacgtcaccgccctcgccacc 148 ||||||| ||||||||||||||||| Sbjct: 519 cgccgacatcaccgccctcgccacc 543
>tpe|BN000589.1| TPA_inf: Oryza sativa (japonica cultivar-group) prx60 gene for class III peroxidase 60 precursor, exons 1-3 Length = 1221 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 124 cgccgacgtcaccgccctcgccacc 148 ||||||| ||||||||||||||||| Sbjct: 510 cgccgacatcaccgccctcgccacc 534
>ref|XM_395705.3| PREDICTED: Apis mellifera similar to CG18497-PA, isoform A (LOC412243), partial mRNA Length = 13130 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 82 ctccaccctctcccgcttcctctcc 106 |||| |||||||||||||||||||| Sbjct: 4468 ctcctccctctcccgcttcctctcc 4444
>gb|CP000390.1| Mesorhizobium sp. BNC1, complete genome Length = 4412446 Score = 42.1 bits (21), Expect = 1.8 Identities = 30/33 (90%) Strand = Plus / Minus Query: 142 cgccacctggggcgtcgccgccggcagcgccgc 174 ||||||| | ||||||||||||||| ||||||| Sbjct: 2801064 cgccacccgcggcgtcgccgccggctgcgccgc 2801032
>dbj|AB254080.1| Streptomyces kanamyceticus kanamycin biosynthetic gene cluster, strain: NBRC 13414 Length = 205447 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 56 gcggcgatggctctcccggcg 76 ||||||||||||||||||||| Sbjct: 67064 gcggcgatggctctcccggcg 67044
>emb|AL732348.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0701F11, complete sequence Length = 82895 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 124 cgccgacgtcaccgccctcgccacc 148 ||||||| ||||||||||||||||| Sbjct: 71867 cgccgacatcaccgccctcgccacc 71843
>ref|XM_537042.2| PREDICTED: Canis familiaris similar to cadherin EGF LAG seven-pass G-type receptor 2, transcript variant 1 (LOC479916), mRNA Length = 10534 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 91 ctcccgcttcctctcctcccgccgc 115 ||||||| ||||||||||||||||| Sbjct: 10124 ctcccgcctcctctcctcccgccgc 10148
>gb|AC113579.3| Tetraodon nigroviridis clone GSTNA-27O10, complete sequence Length = 79804 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 99 tcctctcctcccgccgcatcc 119 ||||||||||||||||||||| Sbjct: 57625 tcctctcctcccgccgcatcc 57605
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4 Length = 35498469 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 124 cgccgacgtcaccgccctcgccacc 148 ||||||| ||||||||||||||||| Sbjct: 35228292 cgccgacatcaccgccctcgccacc 35228268
>emb|AJ245900.1|OSA245900 Oryza sativa chromosome 4 BAC q3037-207F1 complete genome Length = 124321 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 124 cgccgacgtcaccgccctcgccacc 148 ||||||| ||||||||||||||||| Sbjct: 85180 cgccgacatcaccgccctcgccacc 85204
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 156 tcgccgccggcagcgccgcca 176 ||||||||||||||||||||| Sbjct: 191206 tcgccgccggcagcgccgcca 191186
>dbj|AP005752.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0075N02 Length = 186945 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 154 cgtcgccgccggcagcgccgccatc 178 ||||||| ||||||||||||||||| Sbjct: 89900 cgtcgcctccggcagcgccgccatc 89924
>dbj|AK103558.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033132H20, full insert sequence Length = 1413 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 124 cgccgacgtcaccgccctcgccacc 148 ||||||| ||||||||||||||||| Sbjct: 520 cgccgacatcaccgccctcgccacc 544
>dbj|AK101245.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033032B08, full insert sequence Length = 3800 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 124 cgccgacgtcaccgccctcgccacc 148 ||||||| ||||||||||||||||| Sbjct: 3008 cgccgacatcaccgccctcgccacc 3032
>emb|X81440.1|AFGCTAB A.fermentans gctA and gtcB genes Length = 3664 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 155 gtcgccgccggcagcgccgcc 175 ||||||||||||||||||||| Sbjct: 2043 gtcgccgccggcagcgccgcc 2023
>emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome Length = 2595221 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 153 gcgtcgccgccggcagcgccg 173 ||||||||||||||||||||| Sbjct: 1149546 gcgtcgccgccggcagcgccg 1149566
>emb|AL606637.3|OSJN00076 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0039K24, complete sequence Length = 173770 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 124 cgccgacgtcaccgccctcgccacc 148 ||||||| ||||||||||||||||| Sbjct: 24137 cgccgacatcaccgccctcgccacc 24113
>emb|AL807832.6| Mouse DNA sequence from clone RP23-198D21 on chromosome 2, complete sequence Length = 192480 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 239 gcatgagtgcttatgggcgtg 259 ||||||||||||||||||||| Sbjct: 7631 gcatgagtgcttatgggcgtg 7611
>ref|XM_416204.2| PREDICTED: Gallus gallus similar to Glutamate [NMDA] receptor subunit epsilon 2 precursor (N-methyl D-aspartate receptor subtype 2B) (NR2B) (NMDAR2B) (N-methyl-D-aspartate receptor subunit 3) (NR3) (hNR3) (LOC417965), mRNA Length = 4515 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 84 ccaccctctcccgcttcctctcct 107 |||||||||||| ||||||||||| Sbjct: 1129 ccaccctctcccacttcctctcct 1106
>ref|NM_008171.3| Mus musculus glutamate receptor, ionotropic, NMDA2B (epsilon 2) (Grin2b), mRNA Length = 7515 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 84 ccaccctctcccgcttcctctcct 107 |||||||||||| ||||||||||| Sbjct: 1892 ccaccctctcccacttcctctcct 1869
>dbj|AK242519.1| Oryza sativa (japonica cultivar-group) cDNA, clone: J080313B14, full insert sequence Length = 1486 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 87 ccctctcccgcttcctctcctccc 110 ||||||||||||||||||| |||| Sbjct: 219 ccctctcccgcttcctctcgtccc 242
>gb|CP000438.1| Pseudomonas aeruginosa UCBPP-PA14, complete genome Length = 6537648 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 156 tcgccgccggcagcgccgcc 175 |||||||||||||||||||| Sbjct: 6334461 tcgccgccggcagcgccgcc 6334480
>ref|NM_001056281.1| Oryza sativa (japonica cultivar-group) Os03g0281900 (Os03g0281900) mRNA, complete cds Length = 2692 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 157 cgccgccggcagcgccgcca 176 |||||||||||||||||||| Sbjct: 2190 cgccgccggcagcgccgcca 2171
>ref|XM_525965.2| PREDICTED: Pan troglodytes similar to mitochondrial ATP synthase subunit 9 precursor (LOC470584), mRNA Length = 2886 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 88 cctctcccgcttcctctcctcccg 111 |||||||||||||||||| ||||| Sbjct: 361 cctctcccgcttcctctcttcccg 338
>ref|XM_001127162.1| PREDICTED: Homo sapiens hypothetical protein LOC730775 (LOC730775), mRNA Length = 729 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 87 ccctctcccgcttcctctcc 106 |||||||||||||||||||| Sbjct: 531 ccctctcccgcttcctctcc 512
>emb|CT573213.2| Frankia alni str. ACN14A chromosome, complete sequence Length = 7497934 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 157 cgccgccggcagcgccgcca 176 |||||||||||||||||||| Sbjct: 3060710 cgccgccggcagcgccgcca 3060729
>gb|CP000431.1| Rhodococcus sp. RHA1, complete genome Length = 7804765 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 157 cgccgccggcagcgccgcca 176 |||||||||||||||||||| Sbjct: 3220810 cgccgccggcagcgccgcca 3220791
>gb|AE004091.2| Pseudomonas aeruginosa PAO1, complete genome Length = 6264404 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 156 tcgccgccggcagcgccgcc 175 |||||||||||||||||||| Sbjct: 6061543 tcgccgccggcagcgccgcc 6061562
>ref|XM_001093676.1| PREDICTED: Macaca mulatta keratin, hair, basic, 4 (KRTHB4), mRNA Length = 2092 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 78 ccagctccaccctctcccgc 97 |||||||||||||||||||| Sbjct: 1575 ccagctccaccctctcccgc 1594
>ref|XM_001090855.1| PREDICTED: Macaca mulatta similar to type II keratin Kb2 (LOC702551), mRNA Length = 1611 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 91 ctcccgcttcctctcctccc 110 |||||||||||||||||||| Sbjct: 518 ctcccgcttcctctcctccc 499
>gb|AC182676.2| Populus trichocarpa clone Pop1-29E23, complete sequence Length = 62085 Score = 40.1 bits (20), Expect = 7.1 Identities = 35/40 (87%) Strand = Plus / Plus Query: 186 tccagccatttgactggatcaagaaaaccttcttcgagaa 225 ||||||||||||| ||||| || || ||||| |||||||| Sbjct: 7948 tccagccatttgattggattaaaaagacctttttcgagaa 7987 Score = 40.1 bits (20), Expect = 7.1 Identities = 35/40 (87%) Strand = Plus / Plus Query: 186 tccagccatttgactggatcaagaaaaccttcttcgagaa 225 ||||||||||||| ||||| || || ||||| |||||||| Sbjct: 11589 tccagccatttgattggattaaaaagacctttttcgagaa 11628
>ref|XM_979043.1| PREDICTED: Mus musculus gene model 1027, (NCBI) (Gm1027), mRNA Length = 4153 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 78 ccagctccaccctctcccgc 97 |||||||||||||||||||| Sbjct: 1438 ccagctccaccctctcccgc 1419
>ref|XM_978122.1| PREDICTED: Mus musculus gene model 1027, (NCBI) (Gm1027), mRNA Length = 4117 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 78 ccagctccaccctctcccgc 97 |||||||||||||||||||| Sbjct: 1438 ccagctccaccctctcccgc 1419
>gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete genome Length = 3696649 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 138 ccctcgccacctggggcgtcgccg 161 |||| ||||||||||||||||||| Sbjct: 1670391 ccctggccacctggggcgtcgccg 1670414
>gb|AC168217.2| Mus musculus BAC clone RP24-498P8 from chromosome 9, complete sequence Length = 171426 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 79 cagctccaccctctcccgct 98 |||||||||||||||||||| Sbjct: 163859 cagctccaccctctcccgct 163840
>gb|BT018698.1| Zea mays clone EL01N0514C09.d mRNA sequence Length = 1736 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 87 ccctctcccgcttcctctcctccc 110 ||||||||| |||||||||||||| Sbjct: 1034 ccctctccctcttcctctcctccc 1057
>gb|AC119908.16| Mus musculus chromosome 7, clone RP24-240G4, complete sequence Length = 190369 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 89 ctctcccgcttcctctcctc 108 |||||||||||||||||||| Sbjct: 163192 ctctcccgcttcctctcctc 163211
>gb|AC125325.4| Mus musculus BAC clone RP23-296K22 from chromosome 9, complete sequence Length = 156124 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 87 ccctctcccgcttcctctcctccc 110 ||||||||| |||||||||||||| Sbjct: 73727 ccctctccctcttcctctcctccc 73750
>gb|AC125317.4| Mus musculus BAC clone RP24-286L23 from chromosome 7, complete sequence Length = 173185 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 89 ctctcccgcttcctctcctc 108 |||||||||||||||||||| Sbjct: 160135 ctctcccgcttcctctcctc 160116
>ref|XM_546711.2| PREDICTED: Canis familiaris similar to cell division cycle 2-like 1 (PITSLRE proteins) isoform 1, transcript variant 1 (LOC489591), mRNA Length = 2567 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 87 ccctctcccgcttcctctcc 106 |||||||||||||||||||| Sbjct: 502 ccctctcccgcttcctctcc 483
>ref|XM_851975.1| PREDICTED: Canis familiaris similar to cell division cycle 2-like 1 (PITSLRE proteins) isoform 1, transcript variant 8 (LOC489591), mRNA Length = 2606 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 87 ccctctcccgcttcctctcc 106 |||||||||||||||||||| Sbjct: 502 ccctctcccgcttcctctcc 483
>ref|XM_851933.1| PREDICTED: Canis familiaris similar to cell division cycle 2-like 1 (PITSLRE proteins) isoform 1, transcript variant 7 (LOC489591), mRNA Length = 2644 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 87 ccctctcccgcttcctctcc 106 |||||||||||||||||||| Sbjct: 540 ccctctcccgcttcctctcc 521
>ref|XM_851892.1| PREDICTED: Canis familiaris similar to cell division cycle 2-like 1 (PITSLRE proteins) isoform 1, transcript variant 6 (LOC489591), mRNA Length = 2605 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 87 ccctctcccgcttcctctcc 106 |||||||||||||||||||| Sbjct: 540 ccctctcccgcttcctctcc 521
>ref|XM_851851.1| PREDICTED: Canis familiaris similar to cell division cycle 2-like 1 (PITSLRE proteins) isoform 1, transcript variant 5 (LOC489591), mRNA Length = 2597 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 87 ccctctcccgcttcctctcc 106 |||||||||||||||||||| Sbjct: 538 ccctctcccgcttcctctcc 519
>ref|XM_851813.1| PREDICTED: Canis familiaris similar to cell division cycle 2-like 1 (PITSLRE proteins) isoform 1, transcript variant 4 (LOC489591), mRNA Length = 2524 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 87 ccctctcccgcttcctctcc 106 |||||||||||||||||||| Sbjct: 540 ccctctcccgcttcctctcc 521
>ref|XM_851768.1| PREDICTED: Canis familiaris similar to cell division cycle 2-like 1 (PITSLRE proteins) isoform 1, transcript variant 3 (LOC489591), mRNA Length = 2698 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 87 ccctctcccgcttcctctcc 106 |||||||||||||||||||| Sbjct: 633 ccctctcccgcttcctctcc 614
>ref|XM_843606.1| PREDICTED: Canis familiaris similar to cell division cycle 2-like 1 (PITSLRE proteins) isoform 1, transcript variant 2 (LOC489591), mRNA Length = 2605 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 87 ccctctcccgcttcctctcc 106 |||||||||||||||||||| Sbjct: 540 ccctctcccgcttcctctcc 521
>gb|AY957398.1| Sorghum bicolor RAMOSA1 C2H2 zinc-finger transcription factor (ramosa1) gene, complete cds Length = 6017 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 156 tcgccgccggcagcgccgcc 175 |||||||||||||||||||| Sbjct: 1084 tcgccgccggcagcgccgcc 1065
>dbj|AK096578.1| Homo sapiens cDNA FLJ39259 fis, clone OCBBF2009301, highly similar to Ectodermal-neural cortex Length = 2999 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 87 ccctctcccgcttcctctcc 106 |||||||||||||||||||| Sbjct: 489 ccctctcccgcttcctctcc 508
>gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete sequence Length = 3806533 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 157 cgccgccggcagcgccgcca 176 |||||||||||||||||||| Sbjct: 876818 cgccgccggcagcgccgcca 876799
>gb|AC084405.6| Oryza sativa chromosome 3 BAC OSJNBa0044H10 genomic sequence, complete sequence Length = 165113 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 157 cgccgccggcagcgccgcca 176 |||||||||||||||||||| Sbjct: 49406 cgccgccggcagcgccgcca 49387
>gb|AC120496.2| Genomic sequence for Sorghum bicolor, clone SBBBc0267M07, complete sequence Length = 120132 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 156 tcgccgccggcagcgccgcc 175 |||||||||||||||||||| Sbjct: 62226 tcgccgccggcagcgccgcc 62207
>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome Length = 7074893 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 157 cgccgccggcagcgccgcca 176 |||||||||||||||||||| Sbjct: 5060886 cgccgccggcagcgccgcca 5060867
>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome Length = 4352825 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 88 cctctcccgcttcctctcctcccg 111 ||||||||||||||||||| |||| Sbjct: 1394670 cctctcccgcttcctctccgcccg 1394693
>gb|AC108027.5| Homo sapiens BAC clone RP11-64C8 from 4, complete sequence Length = 73256 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 87 ccctctcccgcttcctctcc 106 |||||||||||||||||||| Sbjct: 32978 ccctctcccgcttcctctcc 32997
>ref|XM_798867.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053503669.39) partial mRNA Length = 300 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 423 tgtaagtttatttttcgtca 442 |||||||||||||||||||| Sbjct: 216 tgtaagtttatttttcgtca 197
>dbj|AK087528.1| Mus musculus 0 day neonate eyeball cDNA, RIKEN full-length enriched library, clone:E130314D01 product:unclassifiable, full insert sequence Length = 1278 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 89 ctctcccgcttcctctcctc 108 |||||||||||||||||||| Sbjct: 969 ctctcccgcttcctctcctc 988
>ref|XM_805313.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053510731.104) partial mRNA Length = 417 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 423 tgtaagtttatttttcgtca 442 |||||||||||||||||||| Sbjct: 216 tgtaagtttatttttcgtca 197
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3 Length = 36192742 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 157 cgccgccggcagcgccgcca 176 |||||||||||||||||||| Sbjct: 9626628 cgccgccggcagcgccgcca 9626609
>gb|AC026405.5| Homo sapiens chromosome 5 clone CTC-347N9, complete sequence Length = 168779 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 87 ccctctcccgcttcctctcc 106 |||||||||||||||||||| Sbjct: 99634 ccctctcccgcttcctctcc 99615
>dbj|AP004031.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0432C03 Length = 164394 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 91 ctcccgcttcctctcctccc 110 |||||||||||||||||||| Sbjct: 47348 ctcccgcttcctctcctccc 47329
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 153 gcgtcgccgccggcagcgcc 172 |||||||||||||||||||| Sbjct: 1853089 gcgtcgccgccggcagcgcc 1853070
>emb|X57401.1|KPSCRYAB K.pneumoniae scrY, scrA and scrB genes for sucrose porin, sucrose-specific enzyme II and sucrose-6-phosphate hydrolase, resp Length = 4621 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 147 cctggggcgtcgccgccggc 166 |||||||||||||||||||| Sbjct: 2369 cctggggcgtcgccgccggc 2388
>emb|BX294134.1| Rhodopirellula baltica SH 1 complete genome; segment 2/24 Length = 304450 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 129 acgtcaccgccctcgccacc 148 |||||||||||||||||||| Sbjct: 131970 acgtcaccgccctcgccacc 131989
>emb|AL939132.1|SCO939132 Streptomyces coelicolor A3(2) complete genome; segment 29/29 Length = 302007 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 122 cccgccgacgtcaccgccctcgcc 145 ||||||||||||| |||||||||| Sbjct: 43468 cccgccgacgtcagcgccctcgcc 43491
>emb|AL939118.1|SCO939118 Streptomyces coelicolor A3(2) complete genome; segment 15/29 Length = 303550 Score = 40.1 bits (20), Expect = 7.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 136 cgccctcgccacctggggcgtcgccgcc 163 ||||||||||||| ||||||||| |||| Sbjct: 116941 cgccctcgccacccggggcgtcgacgcc 116968
>emb|AL939111.1|SCO939111 Streptomyces coelicolor A3(2) complete genome; segment 8/29 Length = 321250 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 124 cgccgacgtcaccgccctcg 143 |||||||||||||||||||| Sbjct: 181693 cgccgacgtcaccgccctcg 181674
>emb|AL672143.12| Mouse DNA sequence from clone RP23-467P3 on chromosome 11 Contains part of a novel gene, complete sequence Length = 170167 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 87 ccctctcccgcttcctctcc 106 |||||||||||||||||||| Sbjct: 128799 ccctctcccgcttcctctcc 128780
>emb|AL626807.7| Mouse DNA sequence from clone RP23-350G1 on chromosome 11 Contains two novel genes, the 5' end of the Accn1 gene for neuronal amiloride-sensitive cation channel 1 (degenerin) and the Ccl2 and Ccl7 genes for chemokine (C-C motif) ligand 2 and 7, complete sequence Length = 223726 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 87 ccctctcccgcttcctctcc 106 |||||||||||||||||||| Sbjct: 207538 ccctctcccgcttcctctcc 207557
>gb|AC156800.2| Mus musculus BAC clone RP23-366B23 from chromosome 9, complete sequence Length = 190619 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 87 ccctctcccgcttcctctcctccc 110 ||||||||| |||||||||||||| Sbjct: 41969 ccctctccctcttcctctcctccc 41946
>emb|CR857143.1| Pongo pygmaeus mRNA; cDNA DKFZp469N1921 (from clone DKFZp469N1921) Length = 719 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 88 cctctcccgcttcctctcctcccg 111 |||||||||||||||||| ||||| Sbjct: 73 cctctcccgcttcctctcttcccg 50
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome Length = 7036071 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 148 ctggggcgtcgccgccggca 167 |||||||||||||||||||| Sbjct: 1584364 ctggggcgtcgccgccggca 1584383
>dbj|D10651.2|MUSGRP2 Mus musculus mRNA for glutamate receptor chanel subunit epsilon 2, complete cds Length = 4449 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 84 ccaccctctcccgcttcctctcct 107 |||||||||||| ||||||||||| Sbjct: 1129 ccaccctctcccacttcctctcct 1106
>gb|AC137678.11| Mus musculus chromosome 9, clone RP24-484G16, complete sequence Length = 172337 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 79 cagctccaccctctcccgct 98 |||||||||||||||||||| Sbjct: 123852 cagctccaccctctcccgct 123871
>dbj|AK072135.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013128L10, full insert sequence Length = 2693 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 157 cgccgccggcagcgccgcca 176 |||||||||||||||||||| Sbjct: 2191 cgccgccggcagcgccgcca 2172
>gb|AE005007.1| Halobacterium sp. NRC-1 section 38 of 170 of the complete genome Length = 10293 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 122 cccgccgacgtcaccgccctcgcc 145 ||||||| |||||||||||||||| Sbjct: 6987 cccgccgccgtcaccgccctcgcc 7010
>gb|AE004982.1| Halobacterium sp. NRC-1 section 13 of 170 of the complete genome Length = 13571 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 156 tcgccgccggcagcgccgcc 175 |||||||||||||||||||| Sbjct: 1335 tcgccgccggcagcgccgcc 1354
>ref|NM_012574.1| Rattus norvegicus glutamate receptor, ionotropic, N-methyl D-aspartate 2B (Grin2b), mRNA gb|U11419.1|RNU11419 Rattus norvegicus glutamate receptor subunit mRNA, complete cds Length = 5259 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 84 ccaccctctcccgcttcctctcct 107 |||||||||||| ||||||||||| Sbjct: 1479 ccaccctctcccacttcctctcct 1456
>emb|Z57535.1|HS183B9F H.sapiens CpG island DNA genomic Mse1 fragment, clone 183b9, forward read cpg183b9.ft1a Length = 155 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 87 ccctctcccgcttcctctcc 106 |||||||||||||||||||| Sbjct: 133 ccctctcccgcttcctctcc 152
>gb|AC167667.4| Culex pipiens quinquefasciatus, clone Culex pipiens quinquefasciatus-3940123D9, complete sequence Length = 121336 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 154 cgtcgccgccggcagcgccg 173 |||||||||||||||||||| Sbjct: 56893 cgtcgccgccggcagcgccg 56912
>emb|Y17037.1|MMY17037 Mus musculus bassoon gene, exon 4 and 5 Length = 8748 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 79 cagctccaccctctcccgct 98 |||||||||||||||||||| Sbjct: 6521 cagctccaccctctcccgct 6502
>ref|NM_007567.1| Mus musculus bassoon (Bsn), mRNA Length = 11936 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 79 cagctccaccctctcccgct 98 |||||||||||||||||||| Sbjct: 7227 cagctccaccctctcccgct 7208
>emb|AL929585.11| Mouse DNA sequence from clone RP23-97O7 on chromosome 4, complete sequence Length = 246011 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 78 ccagctccaccctctcccgc 97 |||||||||||||||||||| Sbjct: 149165 ccagctccaccctctcccgc 149184
>gb|AC154758.2| Mus musculus BAC clone RP24-406J8 from chromosome 17, complete sequence Length = 151012 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 87 ccctctcccgcttcctctcctccc 110 |||||||||||| ||||||||||| Sbjct: 50130 ccctctcccgctccctctcctccc 50153
>gb|M91562.1|RATNMDA2B Rattus norvegicus NMDA receptor subtype 2B mRNA, complete cds Length = 4560 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 84 ccaccctctcccgcttcctctcct 107 |||||||||||| ||||||||||| Sbjct: 1186 ccaccctctcccacttcctctcct 1163 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 93,024,535 Number of extensions: 5234538 Number of successful extensions: 423981 Number of sequences better than 10.0: 116 Number of HSP's gapped: 423974 Number of HSP's successfully gapped: 137 Length of query: 484 Length of database: 18,610,659,111 Length adjustment: 22 Effective length of query: 462 Effective length of database: 18,508,616,841 Effective search space: 8550980980542 Effective search space used: 8550980980542 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 13 (26.3 bits)