ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf23h16
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1O95359:TACC2_HUMAN Transforming acidic coiled-coil-containing pr... 32 4.0
2P56546:CTBP2_MOUSE C-terminal-binding protein 2 - Mus musculus (... 32 4.0
3Q08379:GOGA2_HUMAN Golgin subfamily A member 2 - Homo sapiens (H... 31 6.8

>O95359:TACC2_HUMAN Transforming acidic coiled-coil-containing protein 2 - Homo sapiens|
            (Human)
          Length = 2948
 Score = 31.6 bits (70), Expect = 4.0
 Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 12/54 (22%)
 Frame = -3

Query: 149  VPAGVQRARAAVGS------------GCPLEPGDISGAAGEGSGGMRARRRERQ 24
            V AG+   R A+G+              PLEPG ++GAAGE  G +     E Q
Sbjct: 1664 VTAGILEMRNALGNQSTPAPPTGEVADTPLEPGKVAGAAGEAEGDITLSTAETQ 1717



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>P56546:CTBP2_MOUSE C-terminal-binding protein 2 - Mus musculus (Mouse)|
          Length = 445

 Score = 31.6 bits (70), Expect = 4.0
 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = -3

Query: 593 GPVAAGLVPAEQGALPGGVPAGGH-DAVAHAGQRRPEEDEGQTVGDEARH 447
           G    GL PA +G +PGG+P   +   VAH  Q  P  ++    GD   H
Sbjct: 393 GVAPGGLPPAMEGIIPGGIPVTHNLPTVAHPSQ-APSPNQPTKHGDNREH 441



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>Q08379:GOGA2_HUMAN Golgin subfamily A member 2 - Homo sapiens (Human)|
          Length = 990

 Score = 30.8 bits (68), Expect = 6.8
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = -3

Query: 584 AAGLVPAEQGALPGGVPAGGHDAVAHAGQRRPEEDEGQTVGDEAR 450
           AA L P++   LPGGVP+ G    + A  +  + D    + DE +
Sbjct: 63  AATLQPSDDTVLPGGVPSPGASLTSMAASQNHDADNVPNLMDETK 107


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 94,543,708
Number of extensions: 1714742
Number of successful extensions: 7757
Number of sequences better than 10.0: 3
Number of HSP's gapped: 7712
Number of HSP's successfully gapped: 3
Length of query: 274
Length of database: 100,686,439
Length adjustment: 112
Effective length of query: 162
Effective length of database: 69,965,399
Effective search space: 11334394638
Effective search space used: 11334394638
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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