ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf17i04 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_001073098.1| Oryza sativa (japonica cultivar-group) Os12g0277400 (Os12g0277400) mRNA, partial cds Length = 3397 Score = 2020 bits (1019), Expect = 0.0 Identities = 2071/2423 (85%), Gaps = 5/2423 (0%) Strand = Plus / Plus Query: 355 gtgatggcagatgttcaagatggtcagtatgattcgtccactgacagcttgcgcgttgag 414 ||||||||||| | ||| |||||| | | ||| || ||||||||||||||||| |||||| Sbjct: 583 gtgatggcagaaggtcaggatggttattttgactcatccactgacagcttgcgtgttgag 642 Query: 415 cctatttatgaatcatttctttgtccactgacaaaacaaattatgcgggatcctgtcact 474 ||||||||||||||||| | ||||| || | |||||| |||||||||||||||||||| Sbjct: 643 cctatttatgaatcattcttgtgtcctctctctaaacaagttatgcgggatcctgtcact 702 Query: 475 ttagagagtggtgctacatttgaacgtgaagccattttgaagtggttcaaggaatctgat 534 ||||||||||||| ||||||||||||||||| ||| |||||||||||||||| || | Sbjct: 703 atagagagtggtgccacatttgaacgtgaagctattctgaagtggttcaaggacaatggt 762 Query: 535 agcagtggaaggagccttgtctgccctattactaggaaggagctcagcagcactgagttg 594 ||| |||| ||||| |||||||||||| |||||| ||||| |||||||| |||||||| Sbjct: 763 agcggtgggaggagacttgtctgccctgttactaataaggaactcagcagtactgagtta 822 Query: 595 aatccaagtattgctctgagaaacactattgatgaatggatgcataggaatcaggcagct 654 |||||||||||||||||| | || || |||||||||||||||||||| ||| ||||||| Sbjct: 823 aatccaagtattgctctgcggaataccattgatgaatggatgcatagaaatgaggcagcg 882 Query: 655 aaacttgatgtagcccgtaaatccttaacttctgagaattcagaacatgatactttgcaa 714 |||||||| || |||||||| || ||||| ||||| ||||||| ||||| ||||||| Sbjct: 883 aaacttgacgttgcccgtaagtcattaacctctgattgttcagaaggtgatattttgcaa 942 Query: 715 gcacttgaatatgttgtggagatatgtcagagaagtagatccagcagacatgtagtgagg 774 || ||||| ||||||| ||||||||| ||||||||||||||||| |||||| |||||||| Sbjct: 943 gctcttgagtatgttgcggagatatgccagagaagtagatccagtagacatttagtgagg 1002 Query: 775 aagcttggcttgataagcttaatttctgagctgttgaagaatagtagtacaaaagtacgg 834 || |||| ||||| ||||| ||| |||| ||||||||||||| ||| |||||||||| Sbjct: 1003 aaagttgggttgattagcttgattactgacttgttgaagaatagcagtccaaaagtacgt 1062 Query: 835 caaaaggcattggaaagtctttgctttatagctaaagatgacaatgataacaaggatgag 894 ||||||||||||| ||| ||| ||||| |||| ||| |||||||||| |||||| |||| Sbjct: 1063 caaaaggcattgggaagccttcgctttgtagcaaaaaatgacaatgacaacaagaatgaa 1122 Query: 895 attgctgccggggacaacattcgcacaatagtgaagttcttatctcatggccacgtccaa 954 |||||||| |||||||| |||||||| || |||||||||||| |||||| ||| || Sbjct: 1123 attgctgctggggacaatattcgcactattgtgaagttcttaaatcatgggcactcacag 1182 Query: 955 gagaaagaacaggctgcatctctgttatatgaactttcacaatataaacctctttcagnn 1014 |||||||||||||||| |||| ||||||||||||||||| |||||||||||||||| | Sbjct: 1183 gagaaagaacaggctgtatctttgttatatgaactttcagaatataaacctctttc-gga 1241 Query: 1015 nnnnnttgggagcgttcctggggccatacttatacttgttggcttgtcaagtagtaaaat 1074 |||| || ||| |||| || || ||||| ||||| |||||||| ||||||||| | Sbjct: 1242 aaagattggcagtgtttctggtgctattcttattcttgtcggcttgtcgagtagtaaagt 1301 Query: 1075 agaaaacctgttgacagttgatagggctgataagacacttgtgaatttggagagctgtgn 1134 ||||||||| |||||||||||||| ||||| |||||| | | ||||| |||||||| | Sbjct: 1302 agaaaacctattgacagttgatagagctgagaagacattggaaaatttagagagctgcga 1361 Query: 1135 nnnnnntgttagacagatggcggaaaacggtagactgcaaccccttcttaggcttctcct 1194 ||||||||||||||| ||||||||||| |||||||| ||||||||||||||||| Sbjct: 1362 aaagaatgttagacagatggctgaaaacggtaggctgcaaccacttcttaggcttctcct 1421 Query: 1195 tgaaggttcacctgatacacaattatctatggctgcttatgtcggggagcttgttttaac 1254 |||||||||| |||||||||||||||| |||||||| || | || ||||||||||||| Sbjct: 1422 tgaaggttcatctgatacacaattatccatggctgcacatcttggagagcttgttttaag 1481 Query: 1255 aaacgatgtgaaggtctttgtggcacaaacagcaggctctgcactggtcaatatcatgaa 1314 || ||||||||||| ||||||||||||||||||||||| ||||||| ||||||||||| Sbjct: 1482 caatgatgtgaaggtacttgtggcacaaacagcaggctctacactggtgaatatcatgaa 1541 Query: 1315 aagtgggaatagggaggctagagaagccgctctgaaggcactgaatcaaatttcatctta 1374 ||||||||| ||||| || |||||||| ||||| |||||| ||||||||||||||||||| Sbjct: 1542 aagtgggaacagggaagccagagaagcagctcttaaggcattgaatcaaatttcatctta 1601 Query: 1375 cgacgtcagtgcgaagatactaattgaagcaggtattctcccacctctcatagcagacct 1434 || ||| || |||||||| ||||||||||| ||||| ||||||||||| |||| || Sbjct: 1602 tgataccagcgcaaagatacttattgaagcaggcattcttccacctctcatcacagatct 1661 Query: 1435 ctttacagttggcagtaatcagctcccaatgaggttgaaggaggtgtcagcaacaattct 1494 ||| || ||||||||||| ||||| ||||||||||||||||| || || || |||||||| Sbjct: 1662 cttcactgttggcagtaaccagcttccaatgaggttgaaggaagtatcggcgacaattct 1721 Query: 1495 tgcaaatgttgtggcatcaggtgcaaattttcagtccattccacttgaccacaacaggca 1554 ||||||| |||||||||||||||||| |||| ||||| |||||||||| |||||| | || Sbjct: 1722 tgcaaatattgtggcatcaggtgcaagttttgagtccgttccacttgatcacaaccgcca 1781 Query: 1555 gacactggtatctgaagaaattgttcacaatctgcttcatctcatcagcaatacaggacc 1614 || |||| || ||||||||||||||||| ||||||||||||||||||||||| ||||| Sbjct: 1782 gaacttggtgtcagaagaaattgttcacaacctgcttcatctcatcagcaatactggacc 1841 Query: 1615 tgcaactgagtgtaagttactccaggtgcttgttggtttaactagttcttctacaactgt 1674 ||||| |||||| || ||||| || || ||||||||| |||| | |||| |||||||||| Sbjct: 1842 tgcaattgagtgcaaattacttcaagtccttgttggtctaaccacttctgctacaactgt 1901 Query: 1675 ccaaagcatagttgatgccatcaaaagctcaggggctactgtcagtttaattcagtttgt 1734 |||||||||||||||||||||||||||||| || |||||||||||||| ||||||||||| Sbjct: 1902 ccaaagcatagttgatgccatcaaaagctctggtgctactgtcagtttgattcagtttgt 1961 Query: 1735 tgaagcacctcaaagagaggttcgcatggcttccatcaagctcttgaataacatatcacc 1794 ||||||||||||||||| |||||| ||||||||||||| || |||||||| |||||||| Sbjct: 1962 agaagcacctcaaagagaagttcgcttggcttccatcaaacttttgaataatatatcacc 2021 Query: 1795 atgtatgggacaagaactggctgaagcttttcgtggaaattttagtcaactcagcagctt 1854 | |||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 2022 ttttatgggtcaagaactagctgaagcttttcgtggaaattttagtcaactcagcagctt 2081 Query: 1855 gattagagtcattgctgacaacaatggtatttctgaagagcaagcacccgctgctggtct 1914 | | || || |||||||||||||| || ||||||||||| |||||| | |||||||| || Sbjct: 2082 ggtcagggtaattgctgacaacaacggaatttctgaagaacaagcagcagctgctggcct 2141 Query: 1915 ggtagctgatcttcctctgcaggattcggtgctaaccagacgtcttgttgaagatggggc 1974 ||||||||||||||| || ||| || || || |||||||||||| | |||||||||| Sbjct: 2142 catagctgatcttcctccgcgggactcagtactcaccagacgtcttctacaagatggggc 2201 Query: 1975 tttcaccacaatcatatccaaagtgataatgatccgacaaggcgagagtcgtggggggcg 2034 || ||||||||||| | ||||||| |||| | || ||||| || | |||||| || || Sbjct: 2202 cttttccacaatcataacaaaagtgacaatggttcggcaaggggatattcgtggtggccg 2261 Query: 2035 ttttcgtcaacccttttcttgaaggcttagttaggatagtctcccggatcacatttatct 2094 |||| ||||| || ||||||||||| |||||||| |||| ||||||||||||||||||| Sbjct: 2262 tttt-gtcaatccatttcttgaaggtctagttagggtagtttcccggatcacatttatct 2320 Query: 2095 tggaggatgatccagatatcgttgctgttgctcgtgaatacaatctcactacactattta 2154 | |||||||| ||||||| ||| |||||||||||| |||||||||||| | || |||| Sbjct: 2321 t---ggatgatctagatatcattgatgttgctcgtgactacaatctcactcccctcttta 2377 Query: 2155 gtgatctgcttcagatgaatggtcttgacactgtccagattgtctctgccaccgcactag 2214 ||| || ||||||||||||||||| ||||||||||||||||||||||| || ||||||| Sbjct: 2378 ctgacctacttcagatgaatggtctcgacactgtccagattgtctctgctactgcactag 2437 Query: 2215 gaaatctatctggccagtcaaagcatctaacgaagattctgccacctcccaacgcgggat 2274 ||||| ||| |||||||||||| |||||| | ||| |||| |||||||| | |||| Sbjct: 2438 agaatctctctcgccagtcaaagcttctaactaggatagtgccggctcccaacccaggat 2497 Query: 2275 tgtgtttttcaatatttccatgcctcagtcagaagtctgtagcaactggtgtctgtagag 2334 | ||||||||||||||||||||||||||||||||||| || |||||||| | || |||| Sbjct: 2498 tttgtttttcaatatttccatgcctcagtcagaagtccgtggcaactggcgcttgcagag 2557 Query: 2335 ttcatcatggaatatgttcgtcaagagaaagcttctgtctcttggaagggaaggtggtgg 2394 | ||| ||| |||||||| |||| || ||||| ||||||||||||||||||| || | Sbjct: 2558 tccatgttgggatatgttctgcaagggagagcttttgtctcttggaagggaaggcagtag 2617 Query: 2395 agaagttggttgcttgcttggatcacaacaatgagaaagttgttgaagcctctctaacag 2454 | |||||||| ||||||||||| ||||||||||||||||| |||||||| ||||| ||| Sbjct: 2618 aaaagttggtcgcttgcttggaccacaacaatgagaaagtggttgaagctgctctagcag 2677 Query: 2455 cactgtctacgttattagacgatggagtggacattgatcaaggtgtgatggtcctgtgcg 2514 ||||||| || || || || |||||||| |||||||| |||||||| |||||| |||| | Sbjct: 2678 cactgtccaccttgttggaggatggagtagacattgaacaaggtgtcatggtcttgtgtg 2737 Query: 2515 acgcagagggcgtgaaaccaattcttgatgtattgtgtgagaatcggaccgaggcgctga 2574 | |||||||| || || |||||||| || ||||| || |||||||| | ||||| || Sbjct: 2738 atgcagagggggtcaatccaattctagaggtattatgcgagaatcgtaatgaggcacttc 2797 Query: 2575 ggcagagagcggtgtgggccgtagaaaggatccttaggacggatgaaatagcttatgaga 2634 ||||| |||| |||||||| || || |||||||| |||| || |||||||||||||||| Sbjct: 2798 ggcagcgagcagtgtgggcggtggagaggatcctgaggatagacgaaatagcttatgaga 2857 Query: 2635 tctcgggaaaccaaaatgttagtacagccttggtcgaagctttcaggcatggtgacttta 2694 | || ||||||||||||||| | ||||| || || ||||| |||||||||||||||| | Sbjct: 2858 tatctggaaaccaaaatgttggaacagcattagttgaagcattcaggcatggtgactcca 2917 Query: 2695 ggacaagacaaattgcagagcgagcgctaaagcatgttgataagctgcccaatttctctg 2754 ||||||||||||| ||||||||||| |||||||||||||| ||||||||||||||||||| Sbjct: 2918 ggacaagacaaatagcagagcgagcactaaagcatgttgacaagctgcccaatttctctg 2977 Query: 2755 ggatattttcgaagatcggggca 2777 | |||||||| ||||| |||||| Sbjct: 2978 gaatattttccaagatgggggca 3000 Score = 46.1 bits (23), Expect = 0.77 Identities = 41/47 (87%) Strand = Plus / Plus Query: 3030 ttgtatctgtattattcagatgctcagatccatagcgtgatattttt 3076 |||| ||||||||||||||||| | |||||||||| || ||||||| Sbjct: 3252 ttgtgtctgtattattcagatggccggatccatagcatgctattttt 3298
>dbj|AK102429.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033093H07, full insert sequence Length = 3398 Score = 2012 bits (1015), Expect = 0.0 Identities = 2070/2423 (85%), Gaps = 5/2423 (0%) Strand = Plus / Plus Query: 355 gtgatggcagatgttcaagatggtcagtatgattcgtccactgacagcttgcgcgttgag 414 ||||||||||| | ||| |||||| | | ||| || ||||||||||||||||| |||||| Sbjct: 584 gtgatggcagaaggtcaggatggttattttgactcatccactgacagcttgcgtgttgag 643 Query: 415 cctatttatgaatcatttctttgtccactgacaaaacaaattatgcgggatcctgtcact 474 ||||||||||||||||| | ||||| || | |||||| |||||||||||||||||||| Sbjct: 644 cctatttatgaatcattcttgtgtcctctctctaaacaagttatgcgggatcctgtcact 703 Query: 475 ttagagagtggtgctacatttgaacgtgaagccattttgaagtggttcaaggaatctgat 534 ||||||||||||| ||||||||||||||||| ||| |||||||||||||||| || | Sbjct: 704 atagagagtggtgccacatttgaacgtgaagctattctgaagtggttcaaggacaatggt 763 Query: 535 agcagtggaaggagccttgtctgccctattactaggaaggagctcagcagcactgagttg 594 ||| |||| ||||| |||||||||||| |||||| ||||| |||||||| |||||||| Sbjct: 764 agcggtgggaggagacttgtctgccctgttactaataaggaactcagcagtactgagtta 823 Query: 595 aatccaagtattgctctgagaaacactattgatgaatggatgcataggaatcaggcagct 654 |||||||||||||||||| | || || |||||||||||||||||||| ||| ||||||| Sbjct: 824 aatccaagtattgctctgcggaataccattgatgaatggatgcatagaaatgaggcagcg 883 Query: 655 aaacttgatgtagcccgtaaatccttaacttctgagaattcagaacatgatactttgcaa 714 |||||||| || |||||||| || ||||| ||||| ||||||| ||||| ||||||| Sbjct: 884 aaacttgacgttgcccgtaagtcattaacctctgattgttcagaaggtgatattttgcaa 943 Query: 715 gcacttgaatatgttgtggagatatgtcagagaagtagatccagcagacatgtagtgagg 774 || ||||| ||||||| ||||||||| ||||||||||||||||| |||||| |||||||| Sbjct: 944 gctcttgagtatgttgcggagatatgccagagaagtagatccagtagacatttagtgagg 1003 Query: 775 aagcttggcttgataagcttaatttctgagctgttgaagaatagtagtacaaaagtacgg 834 || |||| ||||| ||||| ||| |||| ||||||||||||| ||| |||||||||| Sbjct: 1004 aaagttgggttgattagcttgattactgacttgttgaagaatagcagtccaaaagtacgt 1063 Query: 835 caaaaggcattggaaagtctttgctttatagctaaagatgacaatgataacaaggatgag 894 ||||||||||||| ||| ||| ||||| |||| ||| |||||||||| |||||| |||| Sbjct: 1064 caaaaggcattgggaagccttcgctttgtagcaaaaaatgacaatgacaacaagaatgaa 1123 Query: 895 attgctgccggggacaacattcgcacaatagtgaagttcttatctcatggccacgtccaa 954 |||||||| |||||||| |||||||| || |||||||||||| |||||| ||| || Sbjct: 1124 attgctgctggggacaatattcgcactattgtgaagttcttaaatcatgggcactcacag 1183 Query: 955 gagaaagaacaggctgcatctctgttatatgaactttcacaatataaacctctttcagnn 1014 |||||||||||||||| |||| ||||||||||||||||| |||||||||||||||| | Sbjct: 1184 gagaaagaacaggctgtatctttgttatatgaactttcagaatataaacctctttc-gga 1242 Query: 1015 nnnnnttgggagcgttcctggggccatacttatacttgttggcttgtcaagtagtaaaat 1074 |||| || ||| |||| || || ||||| ||||| |||||||| ||||||||| | Sbjct: 1243 aaagattggcagtgtttctggtgctattcttattcttgtcggcttgtcgagtagtaaagt 1302 Query: 1075 agaaaacctgttgacagttgatagggctgataagacacttgtgaatttggagagctgtgn 1134 ||||||||| |||||||||||||| ||||| |||||| | | ||||| |||||||| | Sbjct: 1303 agaaaacctattgacagttgatagagctgagaagacattggaaaatttagagagctgcga 1362 Query: 1135 nnnnnntgttagacagatggcggaaaacggtagactgcaaccccttcttaggcttctcct 1194 ||||||||||||||| ||||||||||| |||||||| ||||||||||||||||| Sbjct: 1363 aaagagtgttagacagatggctgaaaacggtaggctgcaaccacttcttaggcttctcct 1422 Query: 1195 tgaaggttcacctgatacacaattatctatggctgcttatgtcggggagcttgttttaac 1254 |||||||||| |||||||||||||||| |||||||| || | || ||||||||||||| Sbjct: 1423 tgaaggttcatctgatacacaattatccatggctgcacatcttggagagcttgttttaag 1482 Query: 1255 aaacgatgtgaaggtctttgtggcacaaacagcaggctctgcactggtcaatatcatgaa 1314 || ||||||||||| ||||||||||||||||||||||| ||||||| ||||||||||| Sbjct: 1483 caatgatgtgaaggtacttgtggcacaaacagcaggctctacactggtgaatatcatgaa 1542 Query: 1315 aagtgggaatagggaggctagagaagccgctctgaaggcactgaatcaaatttcatctta 1374 ||||||||| ||||| || |||||||| ||||| |||||| ||||||||||||||||||| Sbjct: 1543 aagtgggaacagggaagccagagaagcagctcttaaggcattgaatcaaatttcatctta 1602 Query: 1375 cgacgtcagtgcgaagatactaattgaagcaggtattctcccacctctcatagcagacct 1434 || ||| || |||||||| ||||||||||| ||||| ||||||||||| |||| || Sbjct: 1603 tgataccagcgcaaagatacttattgaagcaggcattcttccacctctcatcacagatct 1662 Query: 1435 ctttacagttggcagtaatcagctcccaatgaggttgaaggaggtgtcagcaacaattct 1494 ||| || ||||||||||| ||||| ||||||||||||||||| || || || |||||||| Sbjct: 1663 cttcactgttggcagtaaccagcttccaatgaggttgaaggaagtatcggcgacaattct 1722 Query: 1495 tgcaaatgttgtggcatcaggtgcaaattttcagtccattccacttgaccacaacaggca 1554 ||||||| |||||||||||||||||| |||| ||||| |||||||||| |||||| | || Sbjct: 1723 tgcaaatattgtggcatcaggtgcaagttttgagtccgttccacttgatcacaaccgcca 1782 Query: 1555 gacactggtatctgaagaaattgttcacaatctgcttcatctcatcagcaatacaggacc 1614 || |||| || ||||||||||||||||| ||||||||||||||||||||||| ||||| Sbjct: 1783 gaacttggtgtcagaagaaattgttcacaacctgcttcatctcatcagcaatactggacc 1842 Query: 1615 tgcaactgagtgtaagttactccaggtgcttgttggtttaactagttcttctacaactgt 1674 ||||| |||||| || ||||| || || ||||||||| |||| | |||| |||||||||| Sbjct: 1843 tgcaattgagtgcaaattacttcaagtccttgttggtctaaccacttctgctacaactgt 1902 Query: 1675 ccaaagcatagttgatgccatcaaaagctcaggggctactgtcagtttaattcagtttgt 1734 |||||||||||||||||||||||||||||| || |||||||||||||| ||||||||||| Sbjct: 1903 ccaaagcatagttgatgccatcaaaagctctggtgctactgtcagtttgattcagtttgt 1962 Query: 1735 tgaagcacctcaaagagaggttcgcatggcttccatcaagctcttgaataacatatcacc 1794 ||||||||||||||||| |||||| ||||||||||||| || |||||||| |||||||| Sbjct: 1963 agaagcacctcaaagagaagttcgcttggcttccatcaaacttttgaataatatatcacc 2022 Query: 1795 atgtatgggacaagaactggctgaagcttttcgtggaaattttagtcaactcagcagctt 1854 | |||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 2023 ttttatgggtcaagaactagctgaagcttttcgtggaaattttagtcaactcagcagctt 2082 Query: 1855 gattagagtcattgctgacaacaatggtatttctgaagagcaagcacccgctgctggtct 1914 | | || || |||||||||||||| || ||||||||||| |||||| | |||||||| || Sbjct: 2083 ggtcagggtaattgctgacaacaacggaatttctgaagaacaagcagcagctgctggcct 2142 Query: 1915 ggtagctgatcttcctctgcaggattcggtgctaaccagacgtcttgttgaagatggggc 1974 ||||||||||||||| || ||| || || || |||||||||||| | |||||||||| Sbjct: 2143 catagctgatcttcctccgcgggactcagtactcaccagacgtcttctacaagatggggc 2202 Query: 1975 tttcaccacaatcatatccaaagtgataatgatccgacaaggcgagagtcgtggggggcg 2034 || ||||||||||| | ||||||| |||| | || ||||| || | |||||| || || Sbjct: 2203 cttttccacaatcataacaaaagtgacaatggttcggcaaggggatattcgtggtggccg 2262 Query: 2035 ttttcgtcaacccttttcttgaaggcttagttaggatagtctcccggatcacatttatct 2094 |||| ||||| || ||||||||||| |||||||| |||| ||||||||||||||||||| Sbjct: 2263 tttt-gtcaatccatttcttgaaggtctagttagggtagtttcccggatcacatttatct 2321 Query: 2095 tggaggatgatccagatatcgttgctgttgctcgtgaatacaatctcactacactattta 2154 | |||||||| ||||||| ||| |||||||||||| |||||||||||| | || |||| Sbjct: 2322 t---ggatgatctagatatcattgatgttgctcgtgactacaatctcactcccctcttta 2378 Query: 2155 gtgatctgcttcagatgaatggtcttgacactgtccagattgtctctgccaccgcactag 2214 ||| || ||||||||||||||||| ||||||||||||||||||||||| || ||||||| Sbjct: 2379 ctgacctacttcagatgaatggtctcgacactgtccagattgtctctgctactgcactag 2438 Query: 2215 gaaatctatctggccagtcaaagcatctaacgaagattctgccacctcccaacgcgggat 2274 ||||| ||| |||||||||||| |||||| | ||| |||| |||||||| | |||| Sbjct: 2439 agaatctctctcgccagtcaaagcttctaactaggatagtgccggctcccaacccaggat 2498 Query: 2275 tgtgtttttcaatatttccatgcctcagtcagaagtctgtagcaactggtgtctgtagag 2334 | ||||||||||||||||||||||||||||||||||| || |||||||| | || |||| Sbjct: 2499 tttgtttttcaatatttccatgcctcagtcagaagtccgtggcaactggcgcttgcagag 2558 Query: 2335 ttcatcatggaatatgttcgtcaagagaaagcttctgtctcttggaagggaaggtggtgg 2394 | ||| ||| |||||||| |||| || ||||| ||||||||||||||||||| || | Sbjct: 2559 tccatgttgggatatgttctgcaagggagagcttttgtctcttggaagggaaggcagtag 2618 Query: 2395 agaagttggttgcttgcttggatcacaacaatgagaaagttgttgaagcctctctaacag 2454 | |||||||| ||||||||||| ||||||||||||||||| |||||||| ||||| ||| Sbjct: 2619 aaaagttggtcgcttgcttggaccacaacaatgagaaagtggttgaagctgctctagcag 2678 Query: 2455 cactgtctacgttattagacgatggagtggacattgatcaaggtgtgatggtcctgtgcg 2514 ||||||| || || || || |||||||| |||||||| |||||||| |||||| |||| | Sbjct: 2679 cactgtccaccttgttggaggatggagtagacattgaacaaggtgtcatggtcttgtgtg 2738 Query: 2515 acgcagagggcgtgaaaccaattcttgatgtattgtgtgagaatcggaccgaggcgctga 2574 | |||||||| || | |||||||| || ||||| || |||||||| | ||||| || Sbjct: 2739 atgcagagggggtcagtccaattctagaggtattatgcgagaatcgtaatgaggcacttc 2798 Query: 2575 ggcagagagcggtgtgggccgtagaaaggatccttaggacggatgaaatagcttatgaga 2634 ||||| |||| |||||||| || || |||||||| |||| || |||||||||||||||| Sbjct: 2799 ggcagcgagcagtgtgggcggtggagaggatcctgaggatagacgaaatagcttatgaga 2858 Query: 2635 tctcgggaaaccaaaatgttagtacagccttggtcgaagctttcaggcatggtgacttta 2694 | || ||||||||||||||| | ||||| || || ||||| |||||||||||||||| | Sbjct: 2859 tatctggaaaccaaaatgttggaacagcattagttgaagcattcaggcatggtgactcca 2918 Query: 2695 ggacaagacaaattgcagagcgagcgctaaagcatgttgataagctgcccaatttctctg 2754 ||||||||||||| ||||||||||| |||||||||||||| ||||||||||||||||||| Sbjct: 2919 ggacaagacaaatagcagagcgagcactaaagcatgttgacaagctgcccaatttctctg 2978 Query: 2755 ggatattttcgaagatcggggca 2777 | |||||||| ||||| |||||| Sbjct: 2979 gaatattttccaagatgggggca 3001 Score = 46.1 bits (23), Expect = 0.77 Identities = 41/47 (87%) Strand = Plus / Plus Query: 3030 ttgtatctgtattattcagatgctcagatccatagcgtgatattttt 3076 |||| ||||||||||||||||| | |||||||||| || ||||||| Sbjct: 3253 ttgtgtctgtattattcagatggccggatccatagcatgctattttt 3299
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12 Length = 27566993 Score = 1352 bits (682), Expect = 0.0 Identities = 1357/1580 (85%), Gaps = 4/1580 (0%) Strand = Plus / Minus Query: 1198 aggttcacctgatacacaattatctatggctgcttatgtcggggagcttgttttaacaaa 1257 ||||||| |||||||||||||||| |||||||| || | || ||||||||||||| || Sbjct: 10282005 aggttcatctgatacacaattatccatggctgcacatcttggagagcttgttttaagcaa 10281946 Query: 1258 cgatgtgaaggtctttgtggcacaaacagcaggctctgcactggtcaatatcatgaaaag 1317 ||||||||||| ||||||||||||||||||||||| ||||||| |||||||||||||| Sbjct: 10281945 tgatgtgaaggtacttgtggcacaaacagcaggctctacactggtgaatatcatgaaaag 10281886 Query: 1318 tgggaatagggaggctagagaagccgctctgaaggcactgaatcaaatttcatcttacga 1377 |||||| ||||| || |||||||| ||||| |||||| ||||||||||||||||||| || Sbjct: 10281885 tgggaacagggaagccagagaagcagctcttaaggcattgaatcaaatttcatcttatga 10281826 Query: 1378 cgtcagtgcgaagatactaattgaagcaggtattctcccacctctcatagcagacctctt 1437 ||| || |||||||| ||||||||||| ||||| ||||||||||| |||| ||||| Sbjct: 10281825 taccagcgcaaagatacttattgaagcaggcattcttccacctctcatcacagatctctt 10281766 Query: 1438 tacagttggcagtaatcagctcccaatgaggttgaaggaggtgtcagcaacaattcttgc 1497 || ||||||||||| ||||| ||||||||||||||||| || || || ||||||||||| Sbjct: 10281765 cactgttggcagtaaccagcttccaatgaggttgaaggaagtatcggcgacaattcttgc 10281706 Query: 1498 aaatgttgtggcatcaggtgcaaattttcagtccattccacttgaccacaacaggcagac 1557 |||| |||||||||||||||||| |||| ||||| |||||||||| |||||| | |||| Sbjct: 10281705 aaatattgtggcatcaggtgcaagttttgagtccgttccacttgatcacaaccgccagaa 10281646 Query: 1558 actggtatctgaagaaattgttcacaatctgcttcatctcatcagcaatacaggacctgc 1617 |||| || ||||||||||||||||| ||||||||||||||||||||||| |||||||| Sbjct: 10281645 cttggtgtcagaagaaattgttcacaacctgcttcatctcatcagcaatactggacctgc 10281586 Query: 1618 aactgagtgtaagttactccaggtgcttgttggtttaactagttcttctacaactgtcca 1677 || |||||| || ||||| || || ||||||||| |||| | |||| ||||||||||||| Sbjct: 10281585 aattgagtgcaaattacttcaagtccttgttggtctaaccacttctgctacaactgtcca 10281526 Query: 1678 aagcatagttgatgccatcaaaagctcaggggctactgtcagtttaattcagtttgttga 1737 ||||||||||||||||||||||||||| || |||||||||||||| ||||||||||| || Sbjct: 10281525 aagcatagttgatgccatcaaaagctctggtgctactgtcagtttgattcagtttgtaga 10281466 Query: 1738 agcacctcaaagagaggttcgcatggcttccatcaagctcttgaataacatatcaccatg 1797 ||||||||||||||| |||||| ||||||||||||| || |||||||| |||||||| | Sbjct: 10281465 agcacctcaaagagaagttcgcttggcttccatcaaacttttgaataatatatcaccttt 10281406 Query: 1798 tatgggacaagaactggctgaagcttttcgtggaaattttagtcaactcagcagcttgat 1857 |||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| | Sbjct: 10281405 tatgggtcaagaactagctgaagcttttcgtggaaattttagtcaactcagcagcttggt 10281346 Query: 1858 tagagtcattgctgacaacaatggtatttctgaagagcaagcacccgctgctggtctggt 1917 || || |||||||||||||| || ||||||||||| |||||| | |||||||| || | Sbjct: 10281345 cagggtaattgctgacaacaacggaatttctgaagaacaagcagcagctgctggcctcat 10281286 Query: 1918 agctgatcttcctctgcaggattcggtgctaaccagacgtcttgttgaagatggggcttt 1977 |||||||||||||| || ||| || || || |||||||||||| | |||||||||| || Sbjct: 10281285 agctgatcttcctccgcgggactcagtactcaccagacgtcttctacaagatggggcctt 10281226 Query: 1978 caccacaatcatatccaaagtgataatgatccgacaaggcgagagtcgtggggggcgttt 2037 ||||||||||| | ||||||| |||| | || ||||| || | |||||| || ||||| Sbjct: 10281225 ttccacaatcataacaaaagtgacaatggttcggcaaggggatattcgtggtggccgttt 10281166 Query: 2038 tcgtcaacccttttcttgaaggcttagttaggatagtctcccggatcacatttatcttgg 2097 | ||||| || ||||||||||| |||||||| |||| |||||||||||||||||||| Sbjct: 10281165 t-gtcaatccatttcttgaaggtctagttagggtagtttcccggatcacatttatctt-- 10281109 Query: 2098 aggatgatccagatatcgttgctgttgctcgtgaatacaatctcactacactatttagtg 2157 |||||||| ||||||| ||| |||||||||||| |||||||||||| | || |||| || Sbjct: 10281108 -ggatgatctagatatcattgatgttgctcgtgactacaatctcactcccctctttactg 10281050 Query: 2158 atctgcttcagatgaatggtcttgacactgtccagattgtctctgccaccgcactaggaa 2217 | || ||||||||||||||||| ||||||||||||||||||||||| || ||||||| | Sbjct: 10281049 acctacttcagatgaatggtctcgacactgtccagattgtctctgctactgcactagaga 10280990 Query: 2218 atctatctggccagtcaaagcatctaacgaagattctgccacctcccaacgcgggattgt 2277 |||| ||| |||||||||||| |||||| | ||| |||| |||||||| | ||||| | Sbjct: 10280989 atctctctcgccagtcaaagcttctaactaggatagtgccggctcccaacccaggatttt 10280930 Query: 2278 gtttttcaatatttccatgcctcagtcagaagtctgtagcaactggtgtctgtagagttc 2337 |||||||||||||||||||||||||||||||||| || |||||||| | || ||||| | Sbjct: 10280929 gtttttcaatatttccatgcctcagtcagaagtccgtggcaactggcgcttgcagagtcc 10280870 Query: 2338 atcatggaatatgttcgtcaagagaaagcttctgtctcttggaagggaaggtggtggaga 2397 || ||| |||||||| |||| || ||||| ||||||||||||||||||| || || | Sbjct: 10280869 atgttgggatatgttctgcaagggagagcttttgtctcttggaagggaaggcagtagaaa 10280810 Query: 2398 agttggttgcttgcttggatcacaacaatgagaaagttgttgaagcctctctaacagcac 2457 ||||||| ||||||||||| ||||||||||||||||| |||||||| ||||| |||||| Sbjct: 10280809 agttggtcgcttgcttggaccacaacaatgagaaagtggttgaagctgctctagcagcac 10280750 Query: 2458 tgtctacgttattagacgatggagtggacattgatcaaggtgtgatggtcctgtgcgacg 2517 |||| || || || || |||||||| |||||||| |||||||| |||||| |||| || | Sbjct: 10280749 tgtccaccttgttggaggatggagtagacattgaacaaggtgtcatggtcttgtgtgatg 10280690 Query: 2518 cagagggcgtgaaaccaattcttgatgtattgtgtgagaatcggaccgaggcgctgaggc 2577 ||||||| || || |||||||| || ||||| || |||||||| | ||||| || ||| Sbjct: 10280689 cagagggggtcaatccaattctagaggtattatgcgagaatcgtaatgaggcacttcggc 10280630 Query: 2578 agagagcggtgtgggccgtagaaaggatccttaggacggatgaaatagcttatgagatct 2637 || |||| |||||||| || || |||||||| |||| || ||||||||||||||||| | Sbjct: 10280629 agcgagcagtgtgggcggtggagaggatcctgaggatagacgaaatagcttatgagatat 10280570 Query: 2638 cgggaaaccaaaatgttagtacagccttggtcgaagctttcaggcatggtgactttagga 2697 | ||||||||||||||| | ||||| || || ||||| |||||||||||||||| |||| Sbjct: 10280569 ctggaaaccaaaatgttggaacagcattagttgaagcattcaggcatggtgactccagga 10280510 Query: 2698 caagacaaattgcagagcgagcgctaaagcatgttgataagctgcccaatttctctggga 2757 |||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||| | Sbjct: 10280509 caagacaaatagcagagcgagcactaaagcatgttgacaagctgcccaatttctctggaa 10280450 Query: 2758 tattttcgaagatcggggca 2777 ||||||| ||||| |||||| Sbjct: 10280449 tattttccaagatgggggca 10280430 Score = 458 bits (231), Expect = e-125 Identities = 459/535 (85%) Strand = Plus / Minus Query: 355 gtgatggcagatgttcaagatggtcagtatgattcgtccactgacagcttgcgcgttgag 414 ||||||||||| | ||| |||||| | | ||| || ||||||||||||||||| |||||| Sbjct: 10284282 gtgatggcagaaggtcaggatggttattttgactcatccactgacagcttgcgtgttgag 10284223 Query: 415 cctatttatgaatcatttctttgtccactgacaaaacaaattatgcgggatcctgtcact 474 ||||||||||||||||| | ||||| || | |||||| |||||||||||||||||||| Sbjct: 10284222 cctatttatgaatcattcttgtgtcctctctctaaacaagttatgcgggatcctgtcact 10284163 Query: 475 ttagagagtggtgctacatttgaacgtgaagccattttgaagtggttcaaggaatctgat 534 ||||||||||||| ||||||||||||||||| ||| |||||||||||||||| || | Sbjct: 10284162 atagagagtggtgccacatttgaacgtgaagctattctgaagtggttcaaggacaatggt 10284103 Query: 535 agcagtggaaggagccttgtctgccctattactaggaaggagctcagcagcactgagttg 594 ||| |||| ||||| |||||||||||| |||||| ||||| |||||||| |||||||| Sbjct: 10284102 agcggtgggaggagacttgtctgccctgttactaataaggaactcagcagtactgagtta 10284043 Query: 595 aatccaagtattgctctgagaaacactattgatgaatggatgcataggaatcaggcagct 654 |||||||||||||||||| | || || |||||||||||||||||||| ||| ||||||| Sbjct: 10284042 aatccaagtattgctctgcggaataccattgatgaatggatgcatagaaatgaggcagcg 10283983 Query: 655 aaacttgatgtagcccgtaaatccttaacttctgagaattcagaacatgatactttgcaa 714 |||||||| || |||||||| || ||||| ||||| ||||||| ||||| ||||||| Sbjct: 10283982 aaacttgacgttgcccgtaagtcattaacctctgattgttcagaaggtgatattttgcaa 10283923 Query: 715 gcacttgaatatgttgtggagatatgtcagagaagtagatccagcagacatgtagtgagg 774 || ||||| ||||||| ||||||||| ||||||||||||||||| |||||| |||||||| Sbjct: 10283922 gctcttgagtatgttgcggagatatgccagagaagtagatccagtagacatttagtgagg 10283863 Query: 775 aagcttggcttgataagcttaatttctgagctgttgaagaatagtagtacaaaagtacgg 834 || |||| ||||| ||||| ||| |||| ||||||||||||| ||| |||||||||| Sbjct: 10283862 aaagttgggttgattagcttgattactgacttgttgaagaatagcagtccaaaagtacgt 10283803 Query: 835 caaaaggcattggaaagtctttgctttatagctaaagatgacaatgataacaagg 889 ||||||||||||| ||| ||| ||||| |||| ||| |||||||||| ||||||| Sbjct: 10283802 caaaaggcattgggaagccttcgctttgtagcaaaaaatgacaatgacaacaagg 10283748 Score = 226 bits (114), Expect = 4e-55 Identities = 260/312 (83%), Gaps = 1/312 (0%) Strand = Plus / Minus Query: 890 atgagattgctgccggggacaacattcgcacaatagtgaagttcttatctcatggccacg 949 |||| |||||||| |||||||| |||||||| || |||||||||||| |||||| ||| Sbjct: 10283667 atgaaattgctgctggggacaatattcgcactattgtgaagttcttaaatcatgggcact 10283608 Query: 950 tccaagagaaagaacaggctgcatctctgttatatgaactttcacaatataaacctcttt 1009 || |||||||||||||||| |||| ||||||||||||||||| ||||||||||||||| Sbjct: 10283607 cacaggagaaagaacaggctgtatctttgttatatgaactttcagaatataaacctcttt 10283548 Query: 1010 cagnnnnnnnttgggagcgttcctggggccatacttatacttgttggcttgtcaagtagt 1069 | | |||| || ||| |||| || || ||||| ||||| |||||||| |||||| Sbjct: 10283547 c-ggaaaagattggcagtgtttctggtgctattcttattcttgtcggcttgtcgagtagt 10283489 Query: 1070 aaaatagaaaacctgttgacagttgatagggctgataagacacttgtgaatttggagagc 1129 ||| |||||||||| |||||||||||||| ||||| |||||| | | ||||| |||||| Sbjct: 10283488 aaagtagaaaacctattgacagttgatagagctgagaagacattggaaaatttagagagc 10283429 Query: 1130 tgtgnnnnnnntgttagacagatggcggaaaacggtagactgcaaccccttcttaggctt 1189 || | ||||||||||||||| ||||||||||| |||||||| |||||||||||| Sbjct: 10283428 tgcgaaaagaatgttagacagatggctgaaaacggtaggctgcaaccacttcttaggctt 10283369 Query: 1190 ctccttgaaggt 1201 |||||||||||| Sbjct: 10283368 ctccttgaaggt 10283357 Score = 46.1 bits (23), Expect = 0.77 Identities = 41/47 (87%) Strand = Plus / Minus Query: 3030 ttgtatctgtattattcagatgctcagatccatagcgtgatattttt 3076 |||| ||||||||||||||||| | |||||||||| || ||||||| Sbjct: 10280178 ttgtgtctgtattattcagatggccggatccatagcatgctattttt 10280132
>emb|AL935069.5|CNS08CCL Oryza sativa chromosome 12, . BAC OSJNBb0115B15 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 135439 Score = 1352 bits (682), Expect = 0.0 Identities = 1357/1580 (85%), Gaps = 4/1580 (0%) Strand = Plus / Minus Query: 1198 aggttcacctgatacacaattatctatggctgcttatgtcggggagcttgttttaacaaa 1257 ||||||| |||||||||||||||| |||||||| || | || ||||||||||||| || Sbjct: 44924 aggttcatctgatacacaattatccatggctgcacatcttggagagcttgttttaagcaa 44865 Query: 1258 cgatgtgaaggtctttgtggcacaaacagcaggctctgcactggtcaatatcatgaaaag 1317 ||||||||||| ||||||||||||||||||||||| ||||||| |||||||||||||| Sbjct: 44864 tgatgtgaaggtacttgtggcacaaacagcaggctctacactggtgaatatcatgaaaag 44805 Query: 1318 tgggaatagggaggctagagaagccgctctgaaggcactgaatcaaatttcatcttacga 1377 |||||| ||||| || |||||||| ||||| |||||| ||||||||||||||||||| || Sbjct: 44804 tgggaacagggaagccagagaagcagctcttaaggcattgaatcaaatttcatcttatga 44745 Query: 1378 cgtcagtgcgaagatactaattgaagcaggtattctcccacctctcatagcagacctctt 1437 ||| || |||||||| ||||||||||| ||||| ||||||||||| |||| ||||| Sbjct: 44744 taccagcgcaaagatacttattgaagcaggcattcttccacctctcatcacagatctctt 44685 Query: 1438 tacagttggcagtaatcagctcccaatgaggttgaaggaggtgtcagcaacaattcttgc 1497 || ||||||||||| ||||| ||||||||||||||||| || || || ||||||||||| Sbjct: 44684 cactgttggcagtaaccagcttccaatgaggttgaaggaagtatcggcgacaattcttgc 44625 Query: 1498 aaatgttgtggcatcaggtgcaaattttcagtccattccacttgaccacaacaggcagac 1557 |||| |||||||||||||||||| |||| ||||| |||||||||| |||||| | |||| Sbjct: 44624 aaatattgtggcatcaggtgcaagttttgagtccgttccacttgatcacaaccgccagaa 44565 Query: 1558 actggtatctgaagaaattgttcacaatctgcttcatctcatcagcaatacaggacctgc 1617 |||| || ||||||||||||||||| ||||||||||||||||||||||| |||||||| Sbjct: 44564 cttggtgtcagaagaaattgttcacaacctgcttcatctcatcagcaatactggacctgc 44505 Query: 1618 aactgagtgtaagttactccaggtgcttgttggtttaactagttcttctacaactgtcca 1677 || |||||| || ||||| || || ||||||||| |||| | |||| ||||||||||||| Sbjct: 44504 aattgagtgcaaattacttcaagtccttgttggtctaaccacttctgctacaactgtcca 44445 Query: 1678 aagcatagttgatgccatcaaaagctcaggggctactgtcagtttaattcagtttgttga 1737 ||||||||||||||||||||||||||| || |||||||||||||| ||||||||||| || Sbjct: 44444 aagcatagttgatgccatcaaaagctctggtgctactgtcagtttgattcagtttgtaga 44385 Query: 1738 agcacctcaaagagaggttcgcatggcttccatcaagctcttgaataacatatcaccatg 1797 ||||||||||||||| |||||| ||||||||||||| || |||||||| |||||||| | Sbjct: 44384 agcacctcaaagagaagttcgcttggcttccatcaaacttttgaataatatatcaccttt 44325 Query: 1798 tatgggacaagaactggctgaagcttttcgtggaaattttagtcaactcagcagcttgat 1857 |||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| | Sbjct: 44324 tatgggtcaagaactagctgaagcttttcgtggaaattttagtcaactcagcagcttggt 44265 Query: 1858 tagagtcattgctgacaacaatggtatttctgaagagcaagcacccgctgctggtctggt 1917 || || |||||||||||||| || ||||||||||| |||||| | |||||||| || | Sbjct: 44264 cagggtaattgctgacaacaacggaatttctgaagaacaagcagcagctgctggcctcat 44205 Query: 1918 agctgatcttcctctgcaggattcggtgctaaccagacgtcttgttgaagatggggcttt 1977 |||||||||||||| || ||| || || || |||||||||||| | |||||||||| || Sbjct: 44204 agctgatcttcctccgcgggactcagtactcaccagacgtcttctacaagatggggcctt 44145 Query: 1978 caccacaatcatatccaaagtgataatgatccgacaaggcgagagtcgtggggggcgttt 2037 ||||||||||| | ||||||| |||| | || ||||| || | |||||| || ||||| Sbjct: 44144 ttccacaatcataacaaaagtgacaatggttcggcaaggggatattcgtggtggccgttt 44085 Query: 2038 tcgtcaacccttttcttgaaggcttagttaggatagtctcccggatcacatttatcttgg 2097 | ||||| || ||||||||||| |||||||| |||| |||||||||||||||||||| Sbjct: 44084 t-gtcaatccatttcttgaaggtctagttagggtagtttcccggatcacatttatctt-- 44028 Query: 2098 aggatgatccagatatcgttgctgttgctcgtgaatacaatctcactacactatttagtg 2157 |||||||| ||||||| ||| |||||||||||| |||||||||||| | || |||| || Sbjct: 44027 -ggatgatctagatatcattgatgttgctcgtgactacaatctcactcccctctttactg 43969 Query: 2158 atctgcttcagatgaatggtcttgacactgtccagattgtctctgccaccgcactaggaa 2217 | || ||||||||||||||||| ||||||||||||||||||||||| || ||||||| | Sbjct: 43968 acctacttcagatgaatggtctcgacactgtccagattgtctctgctactgcactagaga 43909 Query: 2218 atctatctggccagtcaaagcatctaacgaagattctgccacctcccaacgcgggattgt 2277 |||| ||| |||||||||||| |||||| | ||| |||| |||||||| | ||||| | Sbjct: 43908 atctctctcgccagtcaaagcttctaactaggatagtgccggctcccaacccaggatttt 43849 Query: 2278 gtttttcaatatttccatgcctcagtcagaagtctgtagcaactggtgtctgtagagttc 2337 |||||||||||||||||||||||||||||||||| || |||||||| | || ||||| | Sbjct: 43848 gtttttcaatatttccatgcctcagtcagaagtccgtggcaactggcgcttgcagagtcc 43789 Query: 2338 atcatggaatatgttcgtcaagagaaagcttctgtctcttggaagggaaggtggtggaga 2397 || ||| |||||||| |||| || ||||| ||||||||||||||||||| || || | Sbjct: 43788 atgttgggatatgttctgcaagggagagcttttgtctcttggaagggaaggcagtagaaa 43729 Query: 2398 agttggttgcttgcttggatcacaacaatgagaaagttgttgaagcctctctaacagcac 2457 ||||||| ||||||||||| ||||||||||||||||| |||||||| ||||| |||||| Sbjct: 43728 agttggtcgcttgcttggaccacaacaatgagaaagtggttgaagctgctctagcagcac 43669 Query: 2458 tgtctacgttattagacgatggagtggacattgatcaaggtgtgatggtcctgtgcgacg 2517 |||| || || || || |||||||| |||||||| |||||||| |||||| |||| || | Sbjct: 43668 tgtccaccttgttggaggatggagtagacattgaacaaggtgtcatggtcttgtgtgatg 43609 Query: 2518 cagagggcgtgaaaccaattcttgatgtattgtgtgagaatcggaccgaggcgctgaggc 2577 ||||||| || || |||||||| || ||||| || |||||||| | ||||| || ||| Sbjct: 43608 cagagggggtcaatccaattctagaggtattatgcgagaatcgtaatgaggcacttcggc 43549 Query: 2578 agagagcggtgtgggccgtagaaaggatccttaggacggatgaaatagcttatgagatct 2637 || |||| |||||||| || || |||||||| |||| || ||||||||||||||||| | Sbjct: 43548 agcgagcagtgtgggcggtggagaggatcctgaggatagacgaaatagcttatgagatat 43489 Query: 2638 cgggaaaccaaaatgttagtacagccttggtcgaagctttcaggcatggtgactttagga 2697 | ||||||||||||||| | ||||| || || ||||| |||||||||||||||| |||| Sbjct: 43488 ctggaaaccaaaatgttggaacagcattagttgaagcattcaggcatggtgactccagga 43429 Query: 2698 caagacaaattgcagagcgagcgctaaagcatgttgataagctgcccaatttctctggga 2757 |||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||| | Sbjct: 43428 caagacaaatagcagagcgagcactaaagcatgttgacaagctgcccaatttctctggaa 43369 Query: 2758 tattttcgaagatcggggca 2777 ||||||| ||||| |||||| Sbjct: 43368 tattttccaagatgggggca 43349 Score = 458 bits (231), Expect = e-125 Identities = 459/535 (85%) Strand = Plus / Minus Query: 355 gtgatggcagatgttcaagatggtcagtatgattcgtccactgacagcttgcgcgttgag 414 ||||||||||| | ||| |||||| | | ||| || ||||||||||||||||| |||||| Sbjct: 47201 gtgatggcagaaggtcaggatggttattttgactcatccactgacagcttgcgtgttgag 47142 Query: 415 cctatttatgaatcatttctttgtccactgacaaaacaaattatgcgggatcctgtcact 474 ||||||||||||||||| | ||||| || | |||||| |||||||||||||||||||| Sbjct: 47141 cctatttatgaatcattcttgtgtcctctctctaaacaagttatgcgggatcctgtcact 47082 Query: 475 ttagagagtggtgctacatttgaacgtgaagccattttgaagtggttcaaggaatctgat 534 ||||||||||||| ||||||||||||||||| ||| |||||||||||||||| || | Sbjct: 47081 atagagagtggtgccacatttgaacgtgaagctattctgaagtggttcaaggacaatggt 47022 Query: 535 agcagtggaaggagccttgtctgccctattactaggaaggagctcagcagcactgagttg 594 ||| |||| ||||| |||||||||||| |||||| ||||| |||||||| |||||||| Sbjct: 47021 agcggtgggaggagacttgtctgccctgttactaataaggaactcagcagtactgagtta 46962 Query: 595 aatccaagtattgctctgagaaacactattgatgaatggatgcataggaatcaggcagct 654 |||||||||||||||||| | || || |||||||||||||||||||| ||| ||||||| Sbjct: 46961 aatccaagtattgctctgcggaataccattgatgaatggatgcatagaaatgaggcagcg 46902 Query: 655 aaacttgatgtagcccgtaaatccttaacttctgagaattcagaacatgatactttgcaa 714 |||||||| || |||||||| || ||||| ||||| ||||||| ||||| ||||||| Sbjct: 46901 aaacttgacgttgcccgtaagtcattaacctctgattgttcagaaggtgatattttgcaa 46842 Query: 715 gcacttgaatatgttgtggagatatgtcagagaagtagatccagcagacatgtagtgagg 774 || ||||| ||||||| ||||||||| ||||||||||||||||| |||||| |||||||| Sbjct: 46841 gctcttgagtatgttgcggagatatgccagagaagtagatccagtagacatttagtgagg 46782 Query: 775 aagcttggcttgataagcttaatttctgagctgttgaagaatagtagtacaaaagtacgg 834 || |||| ||||| ||||| ||| |||| ||||||||||||| ||| |||||||||| Sbjct: 46781 aaagttgggttgattagcttgattactgacttgttgaagaatagcagtccaaaagtacgt 46722 Query: 835 caaaaggcattggaaagtctttgctttatagctaaagatgacaatgataacaagg 889 ||||||||||||| ||| ||| ||||| |||| ||| |||||||||| ||||||| Sbjct: 46721 caaaaggcattgggaagccttcgctttgtagcaaaaaatgacaatgacaacaagg 46667 Score = 226 bits (114), Expect = 4e-55 Identities = 260/312 (83%), Gaps = 1/312 (0%) Strand = Plus / Minus Query: 890 atgagattgctgccggggacaacattcgcacaatagtgaagttcttatctcatggccacg 949 |||| |||||||| |||||||| |||||||| || |||||||||||| |||||| ||| Sbjct: 46586 atgaaattgctgctggggacaatattcgcactattgtgaagttcttaaatcatgggcact 46527 Query: 950 tccaagagaaagaacaggctgcatctctgttatatgaactttcacaatataaacctcttt 1009 || |||||||||||||||| |||| ||||||||||||||||| ||||||||||||||| Sbjct: 46526 cacaggagaaagaacaggctgtatctttgttatatgaactttcagaatataaacctcttt 46467 Query: 1010 cagnnnnnnnttgggagcgttcctggggccatacttatacttgttggcttgtcaagtagt 1069 | | |||| || ||| |||| || || ||||| ||||| |||||||| |||||| Sbjct: 46466 c-ggaaaagattggcagtgtttctggtgctattcttattcttgtcggcttgtcgagtagt 46408 Query: 1070 aaaatagaaaacctgttgacagttgatagggctgataagacacttgtgaatttggagagc 1129 ||| |||||||||| |||||||||||||| ||||| |||||| | | ||||| |||||| Sbjct: 46407 aaagtagaaaacctattgacagttgatagagctgagaagacattggaaaatttagagagc 46348 Query: 1130 tgtgnnnnnnntgttagacagatggcggaaaacggtagactgcaaccccttcttaggctt 1189 || | ||||||||||||||| ||||||||||| |||||||| |||||||||||| Sbjct: 46347 tgcgaaaagaatgttagacagatggctgaaaacggtaggctgcaaccacttcttaggctt 46288 Query: 1190 ctccttgaaggt 1201 |||||||||||| Sbjct: 46287 ctccttgaaggt 46276 Score = 46.1 bits (23), Expect = 0.77 Identities = 41/47 (87%) Strand = Plus / Minus Query: 3030 ttgtatctgtattattcagatgctcagatccatagcgtgatattttt 3076 |||| ||||||||||||||||| | |||||||||| || ||||||| Sbjct: 43097 ttgtgtctgtattattcagatggccggatccatagcatgctattttt 43051
>emb|CT830920.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA032B10, full insert sequence Length = 728 Score = 315 bits (159), Expect = 5e-82 Identities = 324/379 (85%) Strand = Plus / Plus Query: 2399 gttggttgcttgcttggatcacaacaatgagaaagttgttgaagcctctctaacagcact 2458 |||||| ||||||||||| ||||||||||||||||| |||||||| ||||| ||||||| Sbjct: 1 gttggtcgcttgcttggaccacaacaatgagaaagtggttgaagctgctctagcagcact 60 Query: 2459 gtctacgttattagacgatggagtggacattgatcaaggtgtgatggtcctgtgcgacgc 2518 ||| || || || || |||||||| |||||||| |||||||| |||||| |||| || || Sbjct: 61 gtccaccttgttggaggatggagtagacattgaacaaggtgtcatggtcttgtgtgatgc 120 Query: 2519 agagggcgtgaaaccaattcttgatgtattgtgtgagaatcggaccgaggcgctgaggca 2578 |||||| || || |||||||| || ||||| || |||||||| | ||||| || |||| Sbjct: 121 agagggggtcaatccaattctagaggtattatgcgagaatcgtaatgaggcacttcggca 180 Query: 2579 gagagcggtgtgggccgtagaaaggatccttaggacggatgaaatagcttatgagatctc 2638 | |||| |||||||| || || |||||||| |||| || ||||||||||||||||| || Sbjct: 181 gcgagcagtgtgggcggtggagaggatcctgaggatagacgaaatagcttatgagatatc 240 Query: 2639 gggaaaccaaaatgttagtacagccttggtcgaagctttcaggcatggtgactttaggac 2698 ||||||||||||||| | ||||| || || ||||| |||||||||||||||| ||||| Sbjct: 241 tggaaaccaaaatgttggaacagcattagttgaagcattcaggcatggtgactccaggac 300 Query: 2699 aagacaaattgcagagcgagcgctaaagcatgttgataagctgcccaatttctctgggat 2758 ||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||| || Sbjct: 301 aagacaaatagcagagcgagcactaaagcatgttgacaagctgcccaatttctctggaat 360 Query: 2759 attttcgaagatcggggca 2777 |||||| ||||| |||||| Sbjct: 361 attttccaagatgggggca 379 Score = 46.1 bits (23), Expect = 0.77 Identities = 41/47 (87%) Strand = Plus / Plus Query: 3030 ttgtatctgtattattcagatgctcagatccatagcgtgatattttt 3076 |||| ||||||||||||||||| | |||||||||| || ||||||| Sbjct: 631 ttgtgtctgtattattcagatggccggatccatagcatgctattttt 677
>gb|AY111175.1| Zea mays CL17202_1 mRNA sequence Length = 547 Score = 192 bits (97), Expect = 5e-45 Identities = 244/293 (83%) Strand = Plus / Plus Query: 2229 cagtcaaagcatctaacgaagattctgccacctcccaacgcgggattgtgtttttcaata 2288 |||||||| ||||| |||||||| ||| | |||||| | | || |||| ||||||||| Sbjct: 169 cagtcaaaacatcttacgaagatactggctgctcccagcccagggctgtgcttttcaata 228 Query: 2289 tttccatgcctcagtcagaagtctgtagcaactggtgtctgtagagttcatcatggaata 2348 |||||||||||||| |||||| ||||||||||||| |||||||||||||| ||| || Sbjct: 229 tttccatgcctcagccagaagactgtagcaactggggtctgtagagttcactgtgggatt 288 Query: 2349 tgttcgtcaagagaaagcttctgtctcttggaagggaaggtggtggagaagttggttgct 2408 ||||| |||| || ||||||||||||||||| ||||||| ||||||||||| ||||| Sbjct: 289 tgttccgcaagggagagcttctgtctcttggaggggaaggcagtggagaagttagttgcc 348 Query: 2409 tgcttggatcacaacaatgagaaagttgttgaagcctctctaacagcactgtctacgtta 2468 ||||||||| | || || |||||||| || ||||| ||||| |||| ||||| || ||| Sbjct: 349 tgcttggataataataacgagaaagtagtcgaagctgctctagcagcgctgtccacttta 408 Query: 2469 ttagacgatggagtggacattgatcaaggtgtgatggtcctgtgcgacgcaga 2521 | || ||||||||||||||||| |||||||| ||||| ||||| || ||||| Sbjct: 409 ctggaggatggagtggacattgaacaaggtgtcatggtgctgtgtgatgcaga 461 Score = 85.7 bits (43), Expect = 9e-13 Identities = 67/75 (89%) Strand = Plus / Plus Query: 2109 gatatcgttgctgttgctcgtgaatacaatctcactacactatttagtgatctgcttcag 2168 |||||| |||||||||||||||| ||| |||| ||| ||||||| | ||||||||||||| Sbjct: 49 gatatcattgctgttgctcgtgattaccatcttacttcactattcactgatctgcttcag 108 Query: 2169 atgaatggtcttgac 2183 |||||||| |||||| Sbjct: 109 atgaatgggcttgac 123
>ref|NM_101930.3| Arabidopsis thaliana ubiquitin-protein ligase (AT1G20780) mRNA, complete cds Length = 2877 Score = 58.0 bits (29), Expect = 2e-04 Identities = 56/65 (86%) Strand = Plus / Plus Query: 463 gatcctgtcactttagagagtggtgctacatttgaacgtgaagccattttgaagtggttc 522 ||||||||||||||||||| |||| ||||| || |||||||||||| ||| |||||| Sbjct: 408 gatcctgtcactttagagaatggtcgaacattcgagcgtgaagccattgagaaatggttc 467 Query: 523 aagga 527 ||||| Sbjct: 468 aagga 472 Score = 58.0 bits (29), Expect = 2e-04 Identities = 74/89 (83%) Strand = Plus / Plus Query: 1190 ctccttgaaggttcacctgatacacaattatctatggctgcttatgtcggggagcttgtt 1249 |||||||||||||||||||| ||| || | ||||||||| | | | ||||||||||| Sbjct: 1134 ctccttgaaggttcacctgaaacaaaactctctatggcttcctttctcggggagcttccc 1193 Query: 1250 ttaacaaacgatgtgaaggtctttgtggc 1278 |||| |||||||||||||| ||||||| Sbjct: 1194 ttaaataacgatgtgaaggttcttgtggc 1222
>gb|AY096753.1| Arabidopsis thaliana unknown protein (At1g20780) mRNA, complete cds Length = 1183 Score = 58.0 bits (29), Expect = 2e-04 Identities = 56/65 (86%) Strand = Plus / Plus Query: 463 gatcctgtcactttagagagtggtgctacatttgaacgtgaagccattttgaagtggttc 522 ||||||||||||||||||| |||| ||||| || |||||||||||| ||| |||||| Sbjct: 112 gatcctgtcactttagagaatggtcgaacattcgagcgtgaagccattgagaaatggttc 171 Query: 523 aagga 527 ||||| Sbjct: 172 aagga 176 Score = 58.0 bits (29), Expect = 2e-04 Identities = 74/89 (83%) Strand = Plus / Plus Query: 1190 ctccttgaaggttcacctgatacacaattatctatggctgcttatgtcggggagcttgtt 1249 |||||||||||||||||||| ||| || | ||||||||| | | | ||||||||||| Sbjct: 838 ctccttgaaggttcacctgaaacaaaactctctatggcttcctttctcggggagcttccc 897 Query: 1250 ttaacaaacgatgtgaaggtctttgtggc 1278 |||| |||||||||||||| ||||||| Sbjct: 898 ttaaataacgatgtgaaggttcttgtggc 926
>gb|AY059775.1| Arabidopsis thaliana unknown protein (At1g20780) mRNA, complete cds Length = 2798 Score = 58.0 bits (29), Expect = 2e-04 Identities = 56/65 (86%) Strand = Plus / Plus Query: 463 gatcctgtcactttagagagtggtgctacatttgaacgtgaagccattttgaagtggttc 522 ||||||||||||||||||| |||| ||||| || |||||||||||| ||| |||||| Sbjct: 408 gatcctgtcactttagagaatggtcgaacattcgagcgtgaagccattgagaaatggttc 467 Query: 523 aagga 527 ||||| Sbjct: 468 aagga 472 Score = 58.0 bits (29), Expect = 2e-04 Identities = 74/89 (83%) Strand = Plus / Plus Query: 1190 ctccttgaaggttcacctgatacacaattatctatggctgcttatgtcggggagcttgtt 1249 |||||||||||||||||||| ||| || | ||||||||| | | | ||||||||||| Sbjct: 1134 ctccttgaaggttcacctgaaacaaaactctctatggcttcctttctcggggagcttccc 1193 Query: 1250 ttaacaaacgatgtgaaggtctttgtggc 1278 |||| |||||||||||||| ||||||| Sbjct: 1194 ttaaataacgatgtgaaggttcttgtggc 1222
>gb|AC069251.5|AC069251 Genomic sequence for Arabidopsis thaliana BAC F2D10 from chromosome I, complete sequence Length = 143879 Score = 58.0 bits (29), Expect = 2e-04 Identities = 56/65 (86%) Strand = Plus / Plus Query: 463 gatcctgtcactttagagagtggtgctacatttgaacgtgaagccattttgaagtggttc 522 ||||||||||||||||||| |||| ||||| || |||||||||||| ||| |||||| Sbjct: 108380 gatcctgtcactttagagaatggtcgaacattcgagcgtgaagccattgagaaatggttc 108439 Query: 523 aagga 527 ||||| Sbjct: 108440 aagga 108444
>dbj|AK226857.1| Arabidopsis thaliana mRNA for hypothetical protein, clone: RAFL08-18-D08 Length = 2820 Score = 54.0 bits (27), Expect = 0.003 Identities = 60/71 (84%) Strand = Plus / Plus Query: 436 tgtccactgacaaaacaaattatgcgggatcctgtcactttagagagtggtgctacattt 495 |||||| ||||||| ||| |||||| |||||||||||||||||| |||| |||||| Sbjct: 332 tgtccattgacaaagcaagttatgcataatcctgtcactttagagaatggtcagacattt 391 Query: 496 gaacgtgaagc 506 || |||||||| Sbjct: 392 gagcgtgaagc 402
>ref|NM_106288.2| Arabidopsis thaliana ubiquitin-protein ligase (AT1G76390) mRNA, complete cds Length = 2671 Score = 54.0 bits (27), Expect = 0.003 Identities = 60/71 (84%) Strand = Plus / Plus Query: 436 tgtccactgacaaaacaaattatgcgggatcctgtcactttagagagtggtgctacattt 495 |||||| ||||||| ||| |||||| |||||||||||||||||| |||| |||||| Sbjct: 326 tgtccattgacaaagcaagttatgcataatcctgtcactttagagaatggtcagacattt 385 Query: 496 gaacgtgaagc 506 || |||||||| Sbjct: 386 gagcgtgaagc 396
>gb|AC012394.3|AC012394 Arabidopsis thaliana chromosome 1 BAC F15M4 genomic sequence, complete sequence Length = 94487 Score = 54.0 bits (27), Expect = 0.003 Identities = 60/71 (84%) Strand = Plus / Minus Query: 436 tgtccactgacaaaacaaattatgcgggatcctgtcactttagagagtggtgctacattt 495 |||||| ||||||| ||| |||||| |||||||||||||||||| |||| |||||| Sbjct: 49457 tgtccattgacaaagcaagttatgcataatcctgtcactttagagaatggtcagacattt 49398 Query: 496 gaacgtgaagc 506 || |||||||| Sbjct: 49397 gagcgtgaagc 49387
>emb|BX815143.1|CNS0AEKK Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS37ZG08 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 2449 Score = 54.0 bits (27), Expect = 0.003 Identities = 60/71 (84%) Strand = Plus / Plus Query: 436 tgtccactgacaaaacaaattatgcgggatcctgtcactttagagagtggtgctacattt 495 |||||| ||||||| ||| |||||| |||||||||||||||||| |||| |||||| Sbjct: 318 tgtccattgacaaagcaagttatgcataatcctgtcactttagagaatggtcagacattt 377 Query: 496 gaacgtgaagc 506 || |||||||| Sbjct: 378 gagcgtgaagc 388
>ref|XM_001224329.1| Chaetomium globosum CBS 148.51 hypothetical protein (CHGG_05116) mRNA, complete cds Length = 897 Score = 46.1 bits (23), Expect = 0.77 Identities = 23/23 (100%) Strand = Plus / Plus Query: 2386 aggtggtggagaagttggttgct 2408 ||||||||||||||||||||||| Sbjct: 866 aggtggtggagaagttggttgct 888
>gb|AC152718.6| Mus musculus BAC clone RP24-432B3 from chromosome 9, complete sequence Length = 174264 Score = 46.1 bits (23), Expect = 0.77 Identities = 29/31 (93%) Strand = Plus / Plus Query: 24 ctcccttccgctcccctctcccctaaccctc 54 ||||||||| ||||||||||||||| ||||| Sbjct: 10830 ctcccttcccctcccctctcccctacccctc 10860
>emb|CT030182.8| Mouse DNA sequence from clone RP23-21N15 on chromosome 13, complete sequence Length = 218811 Score = 46.1 bits (23), Expect = 0.77 Identities = 32/35 (91%) Strand = Plus / Minus Query: 24 ctcccttccgctcccctctcccctaaccctcccct 58 ||||||||| |||||||||||||| ||||||||| Sbjct: 202857 ctcccttcctctcccctctcccctccccctcccct 202823
>emb|AL672195.9| Mouse DNA sequence from clone RP23-468E16 on chromosome 9, complete sequence Length = 182503 Score = 46.1 bits (23), Expect = 0.77 Identities = 29/31 (93%) Strand = Plus / Minus Query: 24 ctcccttccgctcccctctcccctaaccctc 54 ||||||||| ||||||||||||||| ||||| Sbjct: 101635 ctcccttcccctcccctctcccctacccctc 101605
>gb|AC159273.4| Mus musculus BAC clone RP23-391G8 from chromosome 7, complete sequence Length = 227709 Score = 44.1 bits (22), Expect = 3.1 Identities = 25/26 (96%) Strand = Plus / Plus Query: 578 tcagcagcactgagttgaatccaagt 603 |||||||||||||||||||| ||||| Sbjct: 9031 tcagcagcactgagttgaatacaagt 9056
>gb|AC146469.23| Pan troglodytes clone rp43-45g24, complete sequence Length = 191684 Score = 44.1 bits (22), Expect = 3.1 Identities = 22/22 (100%) Strand = Plus / Minus Query: 1205 cctgatacacaattatctatgg 1226 |||||||||||||||||||||| Sbjct: 82739 cctgatacacaattatctatgg 82718
>gb|AC144509.3| Mus musculus BAC clone RP23-394G5 from chromosome 5, complete sequence Length = 181316 Score = 44.1 bits (22), Expect = 3.1 Identities = 25/26 (96%) Strand = Plus / Plus Query: 432 tctttgtccactgacaaaacaaatta 457 ||||||||||||||||||| |||||| Sbjct: 95876 tctttgtccactgacaaaataaatta 95901
>gb|AC074035.22| Homo sapiens Xp BAC RP11-707P20 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 158710 Score = 44.1 bits (22), Expect = 3.1 Identities = 22/22 (100%) Strand = Plus / Minus Query: 1553 cagacactggtatctgaagaaa 1574 |||||||||||||||||||||| Sbjct: 72237 cagacactggtatctgaagaaa 72216
>emb|AL139005.12| Human DNA sequence from clone RP11-95G6 on chromosome 13 Contains the 5' end of the FLT1 gene for fms-related tyrosine kinase 1 (vascular endothelial growth factor/vascular permeability factor receptor) and a CpG island, complete sequence Length = 102119 Score = 44.1 bits (22), Expect = 3.1 Identities = 22/22 (100%) Strand = Plus / Minus Query: 2781 tgaccatgttatgcaaaagtag 2802 |||||||||||||||||||||| Sbjct: 13191 tgaccatgttatgcaaaagtag 13170
>gb|AC093469.11| Mus musculus chromosome 7, clone RP23-21I4, complete sequence Length = 215022 Score = 44.1 bits (22), Expect = 3.1 Identities = 25/26 (96%) Strand = Plus / Plus Query: 578 tcagcagcactgagttgaatccaagt 603 |||||||||||||||||||| ||||| Sbjct: 165933 tcagcagcactgagttgaatacaagt 165958 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 577,911,322 Number of extensions: 30614778 Number of successful extensions: 181819 Number of sequences better than 10.0: 24 Number of HSP's gapped: 181807 Number of HSP's successfully gapped: 45 Length of query: 3147 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 3124 Effective length of database: 18,503,978,556 Effective search space: 57806429008944 Effective search space used: 57806429008944 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 15 (30.2 bits)
