| Clone Name | FLbaf14k14 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AB239677.1| Hordeum vulgare HvABI1 gene for protein phosphatase 2C, partial cds Length = 754 Score = 410 bits (207), Expect = e-111 Identities = 207/207 (100%) Strand = Plus / Plus Query: 1 cgaaggatgatgagtgtcttattcttgctagtgatggcctctgggatgtattgtcgaatg 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 548 cgaaggatgatgagtgtcttattcttgctagtgatggcctctgggatgtattgtcgaatg 607 Query: 61 aagaggtatgcgatgttgcccgcaagcgaatactcttatggcataaaaagaatggggtaa 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 608 aagaggtatgcgatgttgcccgcaagcgaatactcttatggcataaaaagaatggggtaa 667 Query: 121 acttgtcatccgcccaacgtagcggtgactccccagatccagcggctcaagcagctgctg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 668 acttgtcatccgcccaacgtagcggtgactccccagatccagcggctcaagcagctgctg 727 Query: 181 aatgcttgtcgaagcttgctctccaga 207 ||||||||||||||||||||||||||| Sbjct: 728 aatgcttgtcgaagcttgctctccaga 754
>dbj|AK242616.1| Oryza sativa (japonica cultivar-group) cDNA, clone: J090017C19, full insert sequence Length = 1564 Score = 236 bits (119), Expect = 6e-59 Identities = 298/354 (84%), Gaps = 4/354 (1%) Strand = Plus / Plus Query: 3 aaggatgatgagtgtcttattcttgctagtgatggcctctgggatgtattgtcgaatgaa 62 |||||||| || ||||| |||||||||||||||| |||||||| || |||| || ||| Sbjct: 915 aaggatgacgaatgtctcgttcttgctagtgatggtctctgggacgtcatgtcaaacgaa 974 Query: 63 gaggtatgcgatgttgcccgcaagcgaatactcttatggcataaaaagaatggggtaaac 122 ||||||||||||||||| |||||||||||||| | ||||| || |||||||| |||| Sbjct: 975 gaggtatgcgatgttgctcgcaagcgaatactgctgtggcacaagaagaatggcacaaac 1034 Query: 123 ttgtcatccgcccaacgtagcggtgactccccagatccagcggctcaagcagctgctgaa 182 |||| |||| || ||||||||||| ||||||| || ||| ||||||||||||| Sbjct: 1035 ccagcatcagccccgcgaagcggtgactcgtcagatccggcagctgaagcagctgctgag 1094 Query: 183 tgcttgtcgaagcttgctctccagaaggggagcaaggacaacatcacggttattgtggta 242 |||||||||||||||||||||||||||||||||||||||||||| | || ||||| || Sbjct: 1095 tgcttgtcgaagcttgctctccagaaggggagcaaggacaacattagcgtcattgtcgtt 1154 Query: 243 gacctcaaggcgcagaggaagttcaagagcaaaacttaaatcatcttgcttgatggacag 302 ||||||||||| || ||||||||||||||||||| ||| |||||| ||||||| |||| Sbjct: 1155 gacctcaaggcacataggaagttcaagagcaaaagctaa--catctt-cttgatgaacag 1211 Query: 303 cctgtgtgaca-aattcctaggaatctatatagatttggagaatccaaattcga 355 | |||||| |||| ||||| ||||| | ||||||||||||||||||||||| Sbjct: 1212 caacagtgacagaatttctagggatctacagagatttggagaatccaaattcga 1265 Score = 50.1 bits (25), Expect = 0.008 Identities = 31/33 (93%) Strand = Plus / Plus Query: 430 ccaagggctgtattcctgtatacagtacagatt 462 ||||||||||||||| ||||||| ||||||||| Sbjct: 1342 ccaagggctgtattcatgtatacggtacagatt 1374
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1 Length = 43261740 Score = 236 bits (119), Expect = 6e-59 Identities = 298/354 (84%), Gaps = 4/354 (1%) Strand = Plus / Plus Query: 3 aaggatgatgagtgtcttattcttgctagtgatggcctctgggatgtattgtcgaatgaa 62 |||||||| || ||||| |||||||||||||||| |||||||| || |||| || ||| Sbjct: 22619556 aaggatgacgaatgtctcgttcttgctagtgatggtctctgggacgtcatgtcaaacgaa 22619615 Query: 63 gaggtatgcgatgttgcccgcaagcgaatactcttatggcataaaaagaatggggtaaac 122 ||||||||||||||||| |||||||||||||| | ||||| || |||||||| |||| Sbjct: 22619616 gaggtatgcgatgttgctcgcaagcgaatactgctgtggcacaagaagaatggcacaaac 22619675 Query: 123 ttgtcatccgcccaacgtagcggtgactccccagatccagcggctcaagcagctgctgaa 182 |||| |||| || ||||||||||| ||||||| || ||| ||||||||||||| Sbjct: 22619676 ccagcatcagccccgcgaagcggtgactcgtcagatccggcagctgaagcagctgctgag 22619735 Query: 183 tgcttgtcgaagcttgctctccagaaggggagcaaggacaacatcacggttattgtggta 242 |||||||||||||||||||||||||||||||||||||||||||| | || ||||| || Sbjct: 22619736 tgcttgtcgaagcttgctctccagaaggggagcaaggacaacattagcgtcattgtcgtt 22619795 Query: 243 gacctcaaggcgcagaggaagttcaagagcaaaacttaaatcatcttgcttgatggacag 302 ||||||||||| || ||||||||||||||||||| ||| |||||| ||||||| |||| Sbjct: 22619796 gacctcaaggcacataggaagttcaagagcaaaagctaa--catctt-cttgatgaacag 22619852 Query: 303 cctgtgtgaca-aattcctaggaatctatatagatttggagaatccaaattcga 355 | |||||| |||| ||||| ||||| | ||||||||||||||||||||||| Sbjct: 22619853 caacagtgacagaatttctagggatctacagagatttggagaatccaaattcga 22619906 Score = 50.1 bits (25), Expect = 0.008 Identities = 31/33 (93%) Strand = Plus / Plus Query: 430 ccaagggctgtattcctgtatacagtacagatt 462 ||||||||||||||| ||||||| ||||||||| Sbjct: 22619983 ccaagggctgtattcatgtatacggtacagatt 22620015
>dbj|AP003332.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1097D05 Length = 144879 Score = 236 bits (119), Expect = 6e-59 Identities = 298/354 (84%), Gaps = 4/354 (1%) Strand = Plus / Plus Query: 3 aaggatgatgagtgtcttattcttgctagtgatggcctctgggatgtattgtcgaatgaa 62 |||||||| || ||||| |||||||||||||||| |||||||| || |||| || ||| Sbjct: 135293 aaggatgacgaatgtctcgttcttgctagtgatggtctctgggacgtcatgtcaaacgaa 135352 Query: 63 gaggtatgcgatgttgcccgcaagcgaatactcttatggcataaaaagaatggggtaaac 122 ||||||||||||||||| |||||||||||||| | ||||| || |||||||| |||| Sbjct: 135353 gaggtatgcgatgttgctcgcaagcgaatactgctgtggcacaagaagaatggcacaaac 135412 Query: 123 ttgtcatccgcccaacgtagcggtgactccccagatccagcggctcaagcagctgctgaa 182 |||| |||| || ||||||||||| ||||||| || ||| ||||||||||||| Sbjct: 135413 ccagcatcagccccgcgaagcggtgactcgtcagatccggcagctgaagcagctgctgag 135472 Query: 183 tgcttgtcgaagcttgctctccagaaggggagcaaggacaacatcacggttattgtggta 242 |||||||||||||||||||||||||||||||||||||||||||| | || ||||| || Sbjct: 135473 tgcttgtcgaagcttgctctccagaaggggagcaaggacaacattagcgtcattgtcgtt 135532 Query: 243 gacctcaaggcgcagaggaagttcaagagcaaaacttaaatcatcttgcttgatggacag 302 ||||||||||| || ||||||||||||||||||| ||| |||||| ||||||| |||| Sbjct: 135533 gacctcaaggcacataggaagttcaagagcaaaagctaa--catctt-cttgatgaacag 135589 Query: 303 cctgtgtgaca-aattcctaggaatctatatagatttggagaatccaaattcga 355 | |||||| |||| ||||| ||||| | ||||||||||||||||||||||| Sbjct: 135590 caacagtgacagaatttctagggatctacagagatttggagaatccaaattcga 135643 Score = 50.1 bits (25), Expect = 0.008 Identities = 31/33 (93%) Strand = Plus / Plus Query: 430 ccaagggctgtattcctgtatacagtacagatt 462 ||||||||||||||| ||||||| ||||||||| Sbjct: 135720 ccaagggctgtattcatgtatacggtacagatt 135752
>ref|NM_001049950.1| Oryza sativa (japonica cultivar-group) Os01g0583100 (Os01g0583100) mRNA, complete cds Length = 1404 Score = 218 bits (110), Expect = 1e-53 Identities = 233/274 (85%) Strand = Plus / Plus Query: 3 aaggatgatgagtgtcttattcttgctagtgatggcctctgggatgtattgtcgaatgaa 62 |||||||| || ||||| |||||||||||||||| |||||||| || |||| || ||| Sbjct: 1126 aaggatgacgaatgtctcgttcttgctagtgatggtctctgggacgtcatgtcaaacgaa 1185 Query: 63 gaggtatgcgatgttgcccgcaagcgaatactcttatggcataaaaagaatggggtaaac 122 ||||||||||||||||| |||||||||||||| | ||||| || |||||||| |||| Sbjct: 1186 gaggtatgcgatgttgctcgcaagcgaatactgctgtggcacaagaagaatggcacaaac 1245 Query: 123 ttgtcatccgcccaacgtagcggtgactccccagatccagcggctcaagcagctgctgaa 182 |||| |||| || ||||||||||| ||||||| || ||| ||||||||||||| Sbjct: 1246 ccagcatcagccccgcgaagcggtgactcgtcagatccggcagctgaagcagctgctgag 1305 Query: 183 tgcttgtcgaagcttgctctccagaaggggagcaaggacaacatcacggttattgtggta 242 |||||||||||||||||||||||||||||||||||||||||||| | || ||||| || Sbjct: 1306 tgcttgtcgaagcttgctctccagaaggggagcaaggacaacattagcgtcattgtcgtt 1365 Query: 243 gacctcaaggcgcagaggaagttcaagagcaaaa 276 ||||||||||| || ||||||||||||||||||| Sbjct: 1366 gacctcaaggcacataggaagttcaagagcaaaa 1399
>gb|BT017295.1| Zea mays clone EL01N0315F01.c mRNA sequence Length = 1444 Score = 141 bits (71), Expect = 3e-30 Identities = 227/279 (81%) Strand = Plus / Plus Query: 3 aaggatgatgagtgtcttattcttgctagtgatggcctctgggatgtattgtcgaatgaa 62 |||||||| ||||| ||||||||||| ||||| ||||||||||||||| |||| |||||| Sbjct: 923 aaggatgacgagtgccttattcttgccagtgacggcctctgggatgtaatgtcaaatgaa 982 Query: 63 gaggtatgcgatgttgcccgcaagcgaatactcttatggcataaaaagaatggggtaaac 122 |||||||| || | || |||||||| ||||| | ||||| |||||||| | || | Sbjct: 983 gaggtatgtgaaatcgctcgcaagcggatacttctgtggcacaaaaagaacagcacaagc 1042 Query: 123 ttgtcatccgcccaacgtagcggtgactccccagatccagcggctcaagcagctgctgaa 182 | ||||| |||| ||| ||||| ||| |||| |||| |||||||| ||||||||| Sbjct: 1043 tcatcatcagccccacgggttggtgattccgcagactcagccgctcaagcggctgctgaa 1102 Query: 183 tgcttgtcgaagcttgctctccagaaggggagcaaggacaacatcacggttattgtggta 242 |||||||||||| ||||||| |||||||||||||| |||||||| || || | || || Sbjct: 1103 tgcttgtcgaagtttgctcttcagaaggggagcaaagacaacattactgtcgtggtagtt 1162 Query: 243 gacctcaaggcgcagaggaagttcaagagcaaaacttaa 281 || || || || ||| | ||||||||||||||||||||| Sbjct: 1163 gatctgaaagcacagcgcaagttcaagagcaaaacttaa 1201 Score = 46.1 bits (23), Expect = 0.12 Identities = 39/43 (90%), Gaps = 1/43 (2%) Strand = Plus / Plus Query: 428 tgccaagggctgtatt-cctgtatacagtacagattacgaaat 469 |||||||||||||||| || |||||| ||||||||| |||||| Sbjct: 1332 tgccaagggctgtattccccgtatacggtacagattgcgaaat 1374 Score = 42.1 bits (21), Expect = 1.9 Identities = 30/33 (90%) Strand = Plus / Plus Query: 375 tagtacattacttagcccagttcgttattttct 407 |||| |||| ||||||||||||| ||||||||| Sbjct: 1282 tagtgcattgcttagcccagttccttattttct 1314
>gb|AY104084.1| Zea mays PCO105468 mRNA sequence Length = 1247 Score = 141 bits (71), Expect = 3e-30 Identities = 227/279 (81%) Strand = Plus / Plus Query: 3 aaggatgatgagtgtcttattcttgctagtgatggcctctgggatgtattgtcgaatgaa 62 |||||||| ||||| ||||||||||| ||||| ||||||||||||||| |||| |||||| Sbjct: 618 aaggatgacgagtgccttattcttgccagtgacggcctctgggatgtaatgtcaaatgaa 677 Query: 63 gaggtatgcgatgttgcccgcaagcgaatactcttatggcataaaaagaatggggtaaac 122 |||||||| || | || |||||||| ||||| | ||||| |||||||| | || | Sbjct: 678 gaggtatgtgaaatcgctcgcaagcggatacttctgtggcacaaaaagaacagcacaagc 737 Query: 123 ttgtcatccgcccaacgtagcggtgactccccagatccagcggctcaagcagctgctgaa 182 | ||||| |||| ||| ||||||||| |||| |||| |||||||| ||| ||||| Sbjct: 738 tcatcatcagccccacgggttggtgactccgcagactcagccgctcaagcggctactgaa 797 Query: 183 tgcttgtcgaagcttgctctccagaaggggagcaaggacaacatcacggttattgtggta 242 |||||||| ||||||||||| |||||||||||||| |||||||| || || | || || Sbjct: 798 tgcttgtcaaagcttgctcttcagaaggggagcaaagacaacattactgtcgtggtagtt 857 Query: 243 gacctcaaggcgcagaggaagttcaagagcaaaacttaa 281 || || || || ||| | ||||||||||||||||||||| Sbjct: 858 gatctgaaagcacagcgcaagttcaagagcaaaacttaa 896 Score = 40.1 bits (20), Expect = 7.4 Identities = 29/32 (90%) Strand = Plus / Plus Query: 374 ttagtacattacttagcccagttcgttatttt 405 ||||| |||| ||||||||||||| ||||||| Sbjct: 976 ttagtgcattgcttagcccagttccttatttt 1007
>ref|NM_001063033.1| Oryza sativa (japonica cultivar-group) Os05g0592800 (Os05g0592800) mRNA, complete cds Length = 2168 Score = 117 bits (59), Expect = 4e-23 Identities = 116/135 (85%) Strand = Plus / Plus Query: 141 agcggtgactccccagatccagcggctcaagcagctgctgaatgcttgtcgaagcttgct 200 |||||||| || ||||||| || |||||||||||||| || | |||||| |||||||| Sbjct: 1617 agcggtgattcttcagatccggctgctcaagcagctgccgactacttgtccaagcttgcc 1676 Query: 201 ctccagaaggggagcaaggacaacatcacggttattgtggtagacctcaaggcgcagagg 260 || |||||||||||||||||||||||||| || |||| | ||||||||||| || ||| Sbjct: 1677 ctacagaaggggagcaaggacaacatcactgtcgttgtaattgacctcaaggcacatagg 1736 Query: 261 aagttcaagagcaaa 275 ||||||||||||||| Sbjct: 1737 aagttcaagagcaaa 1751 Score = 75.8 bits (38), Expect = 1e-10 Identities = 68/78 (87%) Strand = Plus / Plus Query: 9 gatgagtgtcttattcttgctagtgatggcctctgggatgtattgtcgaatgaagaggta 68 ||||| || ||||||||||| ||||||||||| ||||||||| ||||||| |||||||| Sbjct: 1479 gatgattgccttattcttgcaagtgatggcctttgggatgtaatgtcgaacgaagaggtc 1538 Query: 69 tgcgatgttgcccgcaag 86 || |||| ||| |||||| Sbjct: 1539 tgtgatgctgctcgcaag 1556
>gb|AC130728.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0663C08, complete sequence Length = 142196 Score = 117 bits (59), Expect = 4e-23 Identities = 116/135 (85%) Strand = Plus / Minus Query: 141 agcggtgactccccagatccagcggctcaagcagctgctgaatgcttgtcgaagcttgct 200 |||||||| || ||||||| || |||||||||||||| || | |||||| |||||||| Sbjct: 97346 agcggtgattcttcagatccggctgctcaagcagctgccgactacttgtccaagcttgcc 97287 Query: 201 ctccagaaggggagcaaggacaacatcacggttattgtggtagacctcaaggcgcagagg 260 || |||||||||||||||||||||||||| || |||| | ||||||||||| || ||| Sbjct: 97286 ctacagaaggggagcaaggacaacatcactgtcgttgtaattgacctcaaggcacatagg 97227 Query: 261 aagttcaagagcaaa 275 ||||||||||||||| Sbjct: 97226 aagttcaagagcaaa 97212 Score = 75.8 bits (38), Expect = 1e-10 Identities = 68/78 (87%) Strand = Plus / Minus Query: 9 gatgagtgtcttattcttgctagtgatggcctctgggatgtattgtcgaatgaagaggta 68 ||||| || ||||||||||| ||||||||||| ||||||||| ||||||| |||||||| Sbjct: 97484 gatgattgccttattcttgcaagtgatggcctttgggatgtaatgtcgaacgaagaggtc 97425 Query: 69 tgcgatgttgcccgcaag 86 || |||| ||| |||||| Sbjct: 97424 tgtgatgctgctcgcaag 97407
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5 Length = 29737217 Score = 117 bits (59), Expect = 4e-23 Identities = 116/135 (85%) Strand = Plus / Minus Query: 141 agcggtgactccccagatccagcggctcaagcagctgctgaatgcttgtcgaagcttgct 200 |||||||| || ||||||| || |||||||||||||| || | |||||| |||||||| Sbjct: 29318689 agcggtgattcttcagatccggctgctcaagcagctgccgactacttgtccaagcttgcc 29318630 Query: 201 ctccagaaggggagcaaggacaacatcacggttattgtggtagacctcaaggcgcagagg 260 || |||||||||||||||||||||||||| || |||| | ||||||||||| || ||| Sbjct: 29318629 ctacagaaggggagcaaggacaacatcactgtcgttgtaattgacctcaaggcacatagg 29318570 Query: 261 aagttcaagagcaaa 275 ||||||||||||||| Sbjct: 29318569 aagttcaagagcaaa 29318555 Score = 75.8 bits (38), Expect = 1e-10 Identities = 68/78 (87%) Strand = Plus / Minus Query: 9 gatgagtgtcttattcttgctagtgatggcctctgggatgtattgtcgaatgaagaggta 68 ||||| || ||||||||||| ||||||||||| ||||||||| ||||||| |||||||| Sbjct: 29318827 gatgattgccttattcttgcaagtgatggcctttgggatgtaatgtcgaacgaagaggtc 29318768 Query: 69 tgcgatgttgcccgcaag 86 || |||| ||| |||||| Sbjct: 29318767 tgtgatgctgctcgcaag 29318750 Score = 61.9 bits (31), Expect = 2e-06 Identities = 61/71 (85%) Strand = Plus / Minus Query: 1 cgaaggatgatgagtgtcttattcttgctagtgatggcctctgggatgtattgtcgaatg 60 ||||||||||||| ||||||||||| || || ||||| || |||||||| |||| |||| Sbjct: 26498958 cgaaggatgatgactgtcttattctagcaagcgatgggctgtgggatgttgtgtcaaatg 26498899 Query: 61 aagaggtatgc 71 |||||| |||| Sbjct: 26498898 aagaggcatgc 26498888
>dbj|AK104323.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-027-G08, full insert sequence Length = 1916 Score = 117 bits (59), Expect = 4e-23 Identities = 116/135 (85%) Strand = Plus / Plus Query: 141 agcggtgactccccagatccagcggctcaagcagctgctgaatgcttgtcgaagcttgct 200 |||||||| || ||||||| || |||||||||||||| || | |||||| |||||||| Sbjct: 1578 agcggtgattcttcagatccggctgctcaagcagctgccgactacttgtccaagcttgcc 1637 Query: 201 ctccagaaggggagcaaggacaacatcacggttattgtggtagacctcaaggcgcagagg 260 || |||||||||||||||||||||||||| || |||| | ||||||||||| || ||| Sbjct: 1638 ctacagaaggggagcaaggacaacatcactgtcgttgtaattgacctcaaggcacatagg 1697 Query: 261 aagttcaagagcaaa 275 ||||||||||||||| Sbjct: 1698 aagttcaagagcaaa 1712 Score = 75.8 bits (38), Expect = 1e-10 Identities = 68/78 (87%) Strand = Plus / Plus Query: 9 gatgagtgtcttattcttgctagtgatggcctctgggatgtattgtcgaatgaagaggta 68 ||||| || ||||||||||| ||||||||||| ||||||||| ||||||| |||||||| Sbjct: 1440 gatgattgccttattcttgcaagtgatggcctttgggatgtaatgtcgaacgaagaggtc 1499 Query: 69 tgcgatgttgcccgcaag 86 || |||| ||| |||||| Sbjct: 1500 tgtgatgctgctcgcaag 1517
>dbj|AK070388.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023054G02, full insert sequence Length = 2179 Score = 117 bits (59), Expect = 4e-23 Identities = 116/135 (85%) Strand = Plus / Plus Query: 141 agcggtgactccccagatccagcggctcaagcagctgctgaatgcttgtcgaagcttgct 200 |||||||| || ||||||| || |||||||||||||| || | |||||| |||||||| Sbjct: 1611 agcggtgattcttcagatccggctgctcaagcagctgccgactacttgtccaagcttgcc 1670 Query: 201 ctccagaaggggagcaaggacaacatcacggttattgtggtagacctcaaggcgcagagg 260 || |||||||||||||||||||||||||| || |||| | ||||||||||| || ||| Sbjct: 1671 ctacagaaggggagcaaggacaacatcactgtcgttgtaattgacctcaaggcacatagg 1730 Query: 261 aagttcaagagcaaa 275 ||||||||||||||| Sbjct: 1731 aagttcaagagcaaa 1745 Score = 75.8 bits (38), Expect = 1e-10 Identities = 68/78 (87%) Strand = Plus / Plus Query: 9 gatgagtgtcttattcttgctagtgatggcctctgggatgtattgtcgaatgaagaggta 68 ||||| || ||||||||||| ||||||||||| ||||||||| ||||||| |||||||| Sbjct: 1473 gatgattgccttattcttgcaagtgatggcctttgggatgtaatgtcgaacgaagaggtc 1532 Query: 69 tgcgatgttgcccgcaag 86 || |||| ||| |||||| Sbjct: 1533 tgtgatgctgctcgcaag 1550
>dbj|AK067627.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013113I18, full insert sequence Length = 2169 Score = 117 bits (59), Expect = 4e-23 Identities = 116/135 (85%) Strand = Plus / Plus Query: 141 agcggtgactccccagatccagcggctcaagcagctgctgaatgcttgtcgaagcttgct 200 |||||||| || ||||||| || |||||||||||||| || | |||||| |||||||| Sbjct: 1618 agcggtgattcttcagatccggctgctcaagcagctgccgactacttgtccaagcttgcc 1677 Query: 201 ctccagaaggggagcaaggacaacatcacggttattgtggtagacctcaaggcgcagagg 260 || |||||||||||||||||||||||||| || |||| | ||||||||||| || ||| Sbjct: 1678 ctacagaaggggagcaaggacaacatcactgtcgttgtaattgacctcaaggcacatagg 1737 Query: 261 aagttcaagagcaaa 275 ||||||||||||||| Sbjct: 1738 aagttcaagagcaaa 1752 Score = 75.8 bits (38), Expect = 1e-10 Identities = 68/78 (87%) Strand = Plus / Plus Query: 9 gatgagtgtcttattcttgctagtgatggcctctgggatgtattgtcgaatgaagaggta 68 ||||| || ||||||||||| ||||||||||| ||||||||| ||||||| |||||||| Sbjct: 1480 gatgattgccttattcttgcaagtgatggcctttgggatgtaatgtcgaacgaagaggtc 1539 Query: 69 tgcgatgttgcccgcaag 86 || |||| ||| |||||| Sbjct: 1540 tgtgatgctgctcgcaag 1557
>ref|NM_001062704.1| Oryza sativa (japonica cultivar-group) Os05g0537400 (Os05g0537400) mRNA, complete cds Length = 714 Score = 61.9 bits (31), Expect = 2e-06 Identities = 61/71 (85%) Strand = Plus / Plus Query: 1 cgaaggatgatgagtgtcttattcttgctagtgatggcctctgggatgtattgtcgaatg 60 ||||||||||||| ||||||||||| || || ||||| || |||||||| |||| |||| Sbjct: 434 cgaaggatgatgactgtcttattctagcaagcgatgggctgtgggatgttgtgtcaaatg 493 Query: 61 aagaggtatgc 71 |||||| |||| Sbjct: 494 aagaggcatgc 504
>gb|AC119291.5| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0052K01, complete sequence Length = 144395 Score = 61.9 bits (31), Expect = 2e-06 Identities = 61/71 (85%) Strand = Plus / Minus Query: 1 cgaaggatgatgagtgtcttattcttgctagtgatggcctctgggatgtattgtcgaatg 60 ||||||||||||| ||||||||||| || || ||||| || |||||||| |||| |||| Sbjct: 12433 cgaaggatgatgactgtcttattctagcaagcgatgggctgtgggatgttgtgtcaaatg 12374 Query: 61 aagaggtatgc 71 |||||| |||| Sbjct: 12373 aagaggcatgc 12363
>gb|AC097112.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1741_B01, complete sequence Length = 147704 Score = 61.9 bits (31), Expect = 2e-06 Identities = 61/71 (85%) Strand = Plus / Minus Query: 1 cgaaggatgatgagtgtcttattcttgctagtgatggcctctgggatgtattgtcgaatg 60 ||||||||||||| ||||||||||| || || ||||| || |||||||| |||| |||| Sbjct: 143649 cgaaggatgatgactgtcttattctagcaagcgatgggctgtgggatgttgtgtcaaatg 143590 Query: 61 aagaggtatgc 71 |||||| |||| Sbjct: 143589 aagaggcatgc 143579
>gb|AY107174.1| Zea mays PCO092707 mRNA sequence Length = 909 Score = 61.9 bits (31), Expect = 2e-06 Identities = 46/51 (90%) Strand = Plus / Plus Query: 21 attcttgctagtgatggcctctgggatgtattgtcgaatgaagaggtatgc 71 |||||||| |||||||| || ||||||||| ||||||||||||||| |||| Sbjct: 323 attcttgcaagtgatgggctgtgggatgtagtgtcgaatgaagaggcatgc 373
>emb|CT967316.8| M.truncatula DNA sequence from clone MTH2-189G21 on chromosome 3, complete sequence Length = 127758 Score = 48.1 bits (24), Expect = 0.030 Identities = 57/68 (83%) Strand = Plus / Plus Query: 6 gatgatgagtgtcttattcttgctagtgatggcctctgggatgtattgtcgaatgaagag 65 |||||||| ||||| ||| | |||||||||||| | |||||||| || | ||||||||| Sbjct: 16801 gatgatgaatgtctcattttggctagtgatggcttgtgggatgtcatgacaaatgaagag 16860 Query: 66 gtatgcga 73 | |||||| Sbjct: 16861 gcatgcga 16868
>ref|NM_001064999.1| Oryza sativa (japonica cultivar-group) Os06g0698300 (Os06g0698300) mRNA, complete cds Length = 1282 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Plus Query: 24 cttgctagtgatggcctctggga 46 ||||||||||||||||||||||| Sbjct: 773 cttgctagtgatggcctctggga 795
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6 Length = 30731886 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Minus Query: 24 cttgctagtgatggcctctggga 46 ||||||||||||||||||||||| Sbjct: 28825335 cttgctagtgatggcctctggga 28825313
>dbj|AP005445.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0028E05 Length = 157631 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Minus Query: 24 cttgctagtgatggcctctggga 46 ||||||||||||||||||||||| Sbjct: 133110 cttgctagtgatggcctctggga 133088
>dbj|AP005931.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0545E05 Length = 163229 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Minus Query: 24 cttgctagtgatggcctctggga 46 ||||||||||||||||||||||| Sbjct: 421 cttgctagtgatggcctctggga 399
>dbj|AK071637.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023101G03, full insert sequence Length = 1283 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Plus Query: 24 cttgctagtgatggcctctggga 46 ||||||||||||||||||||||| Sbjct: 774 cttgctagtgatggcctctggga 796
>ref|XM_523813.2| PREDICTED: Pan troglodytes protein phosphatase 1E (PPM1E), mRNA Length = 6410 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 222 aacatcacggttattgtggta 242 ||||||||||||||||||||| Sbjct: 1450 aacatcacggttattgtggta 1470
>ref|XR_013438.1| PREDICTED: Macaca mulatta similar to protein phosphatase 1E (LOC711012), mRNA Length = 6517 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 222 aacatcacggttattgtggta 242 ||||||||||||||||||||| Sbjct: 1588 aacatcacggttattgtggta 1608
>emb|AM262978.1| Cocos nucifera partial mRNA for phosphoprotein phosphatase (pp2C gene) Length = 925 Score = 42.1 bits (21), Expect = 1.9 Identities = 30/33 (90%) Strand = Plus / Plus Query: 17 tcttattcttgctagtgatggcctctgggatgt 49 |||||| ||||| |||||||| ||||||||||| Sbjct: 842 tcttatccttgcaagtgatggactctgggatgt 874
>dbj|AB028995.1| Homo sapiens mRNA for KIAA1072 protein, partial cds Length = 5035 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 222 aacatcacggttattgtggta 242 ||||||||||||||||||||| Sbjct: 1571 aacatcacggttattgtggta 1591
>ref|NM_014906.3| Homo sapiens protein phosphatase 1E (PP2C domain containing) (PPM1E), mRNA Length = 6540 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 222 aacatcacggttattgtggta 242 ||||||||||||||||||||| Sbjct: 1565 aacatcacggttattgtggta 1585
>gb|AF520614.1| Homo sapiens partner of PIX 1 (POPX1) mRNA, complete cds Length = 2274 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 222 aacatcacggttattgtggta 242 ||||||||||||||||||||| Sbjct: 1444 aacatcacggttattgtggta 1464
>gb|AC100832.2| Homo sapiens chromosome 17, clone RP11-579O24, complete sequence Length = 190107 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 222 aacatcacggttattgtggta 242 ||||||||||||||||||||| Sbjct: 25009 aacatcacggttattgtggta 24989
>gb|AC012168.10| Homo sapiens chromosome 10 clone RP11-79I23, complete sequence Length = 175323 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 313 aaattcctaggaatctatata 333 ||||||||||||||||||||| Sbjct: 22898 aaattcctaggaatctatata 22918
>gb|AC147317.3| Pan troglodytes BAC clone RP43-49P4 from chromosome 7, complete sequence Length = 196949 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 222 aacatcacggttattgtggta 242 ||||||||||||||||||||| Sbjct: 191428 aacatcacggttattgtggta 191408
>gb|AF260269.1|AF260269 Homo sapiens PP2CH mRNA, complete cds Length = 6572 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 222 aacatcacggttattgtggta 242 ||||||||||||||||||||| Sbjct: 1598 aacatcacggttattgtggta 1618
>emb|CR382398.1| Plasmodium falciparum chromosome 6, complete sequence; segment 1/5 Length = 349418 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 395 ttcgttattttcttccttttt 415 ||||||||||||||||||||| Sbjct: 28551 ttcgttattttcttccttttt 28571
>emb|AL929359.1|PFA929359 Plasmodium falciparum strain 3D7, chromosome 9; segment 5/5 Length = 281723 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 395 ttcgttattttcttccttttt 415 ||||||||||||||||||||| Sbjct: 220206 ttcgttattttcttccttttt 220186
>emb|AL031747.9|PFMAL1P4 Plasmodium falciparum DNA from MAL1P4, complete sequence Length = 66442 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 395 ttcgttattttcttccttttt 415 ||||||||||||||||||||| Sbjct: 52581 ttcgttattttcttccttttt 52601
>emb|CR749253.1| Homo sapiens mRNA; cDNA DKFZp781F1422 (from clone DKFZp781F1422) Length = 4597 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 222 aacatcacggttattgtggta 242 ||||||||||||||||||||| Sbjct: 807 aacatcacggttattgtggta 827
>gb|AC005207.2| Homo sapiens chromosome 17, clone RP5-1081P3, complete sequence Length = 59412 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 222 aacatcacggttattgtggta 242 ||||||||||||||||||||| Sbjct: 5480 aacatcacggttattgtggta 5500
>gb|AF466200.2| Sorghum bicolor putative protein kinase gene, partial cds; putative Cf-2, fertilization-independent endosperm proteins, hypothetical protein, putative non-LTR retroelement reverse transcriptase, OCL5 protein, tryptophan synthase beta-subunit, hypothetical proteins, putative AP endonuclease, putative RNA polymerase II complex component SRB7, putative beta-1,3-glucanase, hypothetical protein, TNP2-like protein, hypothetical protein, putative phosphate/phosphoenolpyruvate translocator, putative protein, hypothetical proteins, putative galactosyltransferase family, hypothetical protein, putative cytochrome P450 family, putative lipid transfer protein, putative photoreceptor-interacting protein, and hypothetical protein genes, complete cds; and hypothetical protein gene, partial cds Length = 202197 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 25 ttgctagtgatggcctctgggatgt 49 ||||||||||||| ||||||||||| Sbjct: 153490 ttgctagtgatggactctgggatgt 153466
>emb|CT573028.11| M.truncatula DNA sequence from clone MTH2-51N20 on chromosome 3, complete sequence Length = 116350 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Plus Query: 22 ttcttgctagtgatggcctctgggatgta 50 ||||||| |||||||| |||||||||||| Sbjct: 68266 ttcttgcaagtgatggactctgggatgta 68294
>emb|CT737142.2| CH251-5K7, complete sequence Length = 178798 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 264 ttcaagagcaaaacttaaat 283 |||||||||||||||||||| Sbjct: 17673 ttcaagagcaaaacttaaat 17654
>gb|DQ230990.1| Homo sapiens peroxiredoxin 6 (PRDX6) gene, complete cds Length = 14613 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 20 tattcttgctagtgatggcc 39 |||||||||||||||||||| Sbjct: 2869 tattcttgctagtgatggcc 2888
>gb|AC146437.3| Pan troglodytes BAC clone RP43-15J3 from 7, complete sequence Length = 163637 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 398 gttattttcttcctttttca 417 |||||||||||||||||||| Sbjct: 17230 gttattttcttcctttttca 17249
>gb|CP000058.1| Pseudomonas syringae pv. phaseolicola 1448A, complete genome Length = 5928787 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 152 cccagatccagcggctcaagcagc 175 ||||||||||||||| |||||||| Sbjct: 4209309 cccagatccagcggcgcaagcagc 4209332
>gb|AC004451.2| Homo sapiens PAC clone RP4-789N1 from 7, complete sequence Length = 108642 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 398 gttattttcttcctttttca 417 |||||||||||||||||||| Sbjct: 22339 gttattttcttcctttttca 22358
>emb|AL139142.10| Human DNA sequence from clone RP3-436N22 on chromosome 1q24.1-25.3 Contains the PRDX6 gene for peroxiredoxin 6, gene MGC43026, a novel gene, the 3' end of a novel gene (FLJ45235) and two CpG islands, complete sequence Length = 159771 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 20 tattcttgctagtgatggcc 39 |||||||||||||||||||| Sbjct: 4168 tattcttgctagtgatggcc 4187
>ref|NM_001013394.1| Gallus gallus similar to protein phosphatase 2C eta (LOC415941), mRNA emb|AJ719435.1| Gallus gallus mRNA for hypothetical protein, clone 2e20 Length = 2471 Score = 40.1 bits (20), Expect = 7.4 Identities = 32/36 (88%) Strand = Plus / Plus Query: 32 tgatggcctctgggatgtattgtcgaatgaagaggt 67 ||||||||| |||||||| |||| ||||||||||| Sbjct: 1160 tgatggcctttgggatgttttgtgcaatgaagaggt 1195
>gb|AC112492.3| Homo sapiens X BAC RP11-12D5 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 116568 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 264 ttcaagagcaaaacttaaat 283 |||||||||||||||||||| Sbjct: 52307 ttcaagagcaaaacttaaat 52326
>emb|CR523416.1| Gallus gallus finished cDNA, clone ChEST904p5 Length = 1436 Score = 40.1 bits (20), Expect = 7.4 Identities = 32/36 (88%) Strand = Plus / Plus Query: 32 tgatggcctctgggatgtattgtcgaatgaagaggt 67 ||||||||| |||||||| |||| ||||||||||| Sbjct: 865 tgatggcctttgggatgttttgtgcaatgaagaggt 900
>emb|CT033850.3| RP43-011K05, complete sequence Length = 158402 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 264 ttcaagagcaaaacttaaat 283 |||||||||||||||||||| Sbjct: 17662 ttcaagagcaaaacttaaat 17643
>ref|XM_728428.1| Plasmodium chabaudi chabaudi hypothetical protein (PC301029.00.0) partial mRNA Length = 390 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 405 tcttcctttttcaccatttg 424 |||||||||||||||||||| Sbjct: 36 tcttcctttttcaccatttg 17
>ref|XM_738652.1| Plasmodium chabaudi chabaudi hypothetical protein (PC001011.02.0) partial mRNA Length = 3822 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 405 tcttcctttttcaccatttg 424 |||||||||||||||||||| Sbjct: 2127 tcttcctttttcaccatttg 2108 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 87,920,724 Number of extensions: 4747472 Number of successful extensions: 115474 Number of sequences better than 10.0: 52 Number of HSP's gapped: 115474 Number of HSP's successfully gapped: 79 Length of query: 505 Length of database: 18,610,659,111 Length adjustment: 22 Effective length of query: 483 Effective length of database: 18,508,616,841 Effective search space: 8939661934203 Effective search space used: 8939661934203 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)