ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf17h10 |
|---|---|
| Clone Library Name | barley_pub |
>P14381:YTX2_XENLA Transposon TX1 uncharacterized 149 kDa protein - Xenopus laevis| (African clawed frog) Length = 1308 Score = 68.9 bits (167), Expect(2) = 6e-18 Identities = 47/137 (34%), Positives = 66/137 (48%), Gaps = 1/137 (0%) Frame = +2 Query: 1259 N*GPSSDGFPAHFY*RHWSLCGEEITRVVLRTVRGEQSAKIINDTVLVLIPKVMNPTLIS 1438 N P DG F+ W G + RV+ + + VL L+PK + LI Sbjct: 464 NKSPGLDGLTIEFFQFFWDTLGPDFHRVLTEAFKKGELPLSCRRAVLSLLPKKGDLRLIK 523 Query: 1439 QFRPVSLRNVLYKIASKVVGNRLKHVIPDIISE*QSAFVPRRLITDNI-ICGECLHFTKR 1615 +RPVSL + YKI +K + RLK V+ ++I QS VP R I DN+ + + LHF +R Sbjct: 524 NWRPVSLLSTDYKIVAKAISLRLKSVLAEVIHPDQSYTVPGRTIFDNVFLIRDLLHFARR 583 Query: 1616 SKAKTKGLCALKLDMIK 1666 + L L LD K Sbjct: 584 TGL---SLAFLSLDQEK 597 Score = 43.9 bits (102), Expect(2) = 6e-18 Identities = 30/112 (26%), Positives = 55/112 (49%), Gaps = 2/112 (1%) Frame = +3 Query: 942 RSRIEWISTGDKNTKFFHLRASIRRKKNMVKALANSLGTITDDPRDIKEMVNDFYQNLYT 1121 RSR++ + D+ ++FF+ + + + L GT +DP I++ FYQNL++ Sbjct: 359 RSRMQLLCDMDRGSRFFYALEKKKGNRKQITCLFAEDGTPLEDPEAIRDRARSFYQNLFS 418 Query: 1122 FEGVS--GVDDVLVHVPETEKVTTTMNDILCTPYTSKEVKTALFQMFPTKAP 1271 + +S +++ +P V+ + L TP T E+ AL M K+P Sbjct: 419 PDPISPDACEELWDGLP---VVSERRKERLETPITLDELSQALRLMPHNKSP 467
>P08548:LIN1_NYCCO LINE-1 reverse transcriptase homolog - Nycticebus coucang (Slow| loris) Length = 1260 Score = 50.1 bits (118), Expect(2) = 2e-12 Identities = 33/102 (32%), Positives = 52/102 (50%), Gaps = 5/102 (4%) Frame = +2 Query: 1268 PSSDGFPAHFY*RHWSLCGEEITRVVLRTVRGEQSAKIINDTV----LVLIPKV-MNPTL 1432 P DGF + FY EE+ ++L + + I+ +T + LIPK +PT Sbjct: 470 PGPDGFTSEFY----QTFKEELVPILLNLFQNIEKEGILPNTFYEANITLIPKPGKDPTR 525 Query: 1433 ISQFRPVSLRNVLYKIASKVVGNRLKHVIPDIISE*QSAFVP 1558 +RP+SL N+ KI +K++ NR++ I II Q F+P Sbjct: 526 KENYRPISLMNIDAKILNKILTNRIQQHIKKIIHHDQVGFIP 567 Score = 43.9 bits (102), Expect(2) = 2e-12 Identities = 24/91 (26%), Positives = 50/91 (54%), Gaps = 4/91 (4%) Frame = +3 Query: 1011 RRKKNMVKALANSLGTITDDPRDIKEMVNDFYQNLYT--FEGVSGVDDVL--VHVPETEK 1178 +R K+++ ++ N IT DP +I++++N++Y+ LY+ +E + +D L H+P + Sbjct: 383 KRVKSLISSIRNGNDEITTDPSEIQKILNEYYKKLYSHKYENLKEIDQYLEACHLPRLSQ 442 Query: 1179 VTTTMNDILCTPYTSKEVKTALFQMFPTKAP 1271 M L P +S E+ + + + K+P Sbjct: 443 KEVEM---LNRPISSSEIASTIQNLPKKKSP 470
>P11369:POL2_MOUSE Retrovirus-related Pol polyprotein LINE-1 - Mus musculus (Mouse)| Length = 1281 Score = 49.3 bits (116), Expect(2) = 2e-11 Identities = 38/111 (34%), Positives = 56/111 (50%), Gaps = 5/111 (4%) Frame = +2 Query: 1241 SLPNVPN*GPSSDGFPAHFY*RHWSLCGEEITRVVLRTVRG-EQSAKIIN---DTVLVLI 1408 SLP + GP DGF A FY E++ ++ + E + N + + LI Sbjct: 471 SLPTKKSPGP--DGFSAEFY----QTFKEDLIPILHKLFHKIEVEGTLPNSFYEATITLI 524 Query: 1409 PKVM-NPTLISQFRPVSLRNVLYKIASKVVGNRLKHVIPDIISE*QSAFVP 1558 PK +PT I FRP+SL N+ KI +K++ NR++ I II Q F+P Sbjct: 525 PKPQKDPTKIENFRPISLMNIDAKILNKILANRIQEHIKAIIHPDQVGFIP 575 Score = 41.6 bits (96), Expect(2) = 2e-11 Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 2/86 (2%) Frame = +3 Query: 1014 RKKNMVKALANSLGTITDDPRDIKEMVNDFYQNLYT--FEGVSGVDDVLVHVPETEKVTT 1187 R K ++ + N G IT DP +I+ + FY+ LY+ E + +D L + K+ Sbjct: 392 RDKILINKIRNEKGDITTDPEEIQNTIRSFYKRLYSTKLENLDEMDKFLDRY-QVPKLNQ 450 Query: 1188 TMNDILCTPYTSKEVKTALFQMFPTK 1265 D L +P + KE++ A+ PTK Sbjct: 451 DQVDHLNSPISPKEIE-AVINSLPTK 475
>P08547:LIN1_HUMAN LINE-1 reverse transcriptase homolog - Homo sapiens (Human)| Length = 1259 Score = 50.8 bits (120), Expect = 2e-05 Identities = 36/111 (32%), Positives = 60/111 (54%), Gaps = 5/111 (4%) Frame = +2 Query: 1241 SLPNVPN*GPSSDGFPAHFY*RHWSLCGEEITRVVLRTVRGEQSAKIINDTV----LVLI 1408 SLPN + GP +GF A FY R+ EE+ +L+ + + I+ ++ ++LI Sbjct: 463 SLPNKKSPGP--EGFTAEFYQRY----KEELVPFLLKLFQSIEKEGILPNSFYEASIILI 516 Query: 1409 PKVMNPTLISQ-FRPVSLRNVLYKIASKVVGNRLKHVIPDIISE*QSAFVP 1558 PK T + FRP+SL N+ KI +K++ N+++ I +I Q F+P Sbjct: 517 PKPGRDTTKKENFRPISLMNIDAKILNKILANQIQQHIKKLIHHDQVGFIP 567 Score = 41.2 bits (95), Expect = 0.016 Identities = 32/132 (24%), Positives = 58/132 (43%), Gaps = 2/132 (1%) Frame = +3 Query: 882 IKINENLVEMYHMEELMWRQRSRIEWISTGDKNTKFFHLRASIRRKKNMVKALANSLGTI 1061 IKI L E+ + L SR + +K + +R+KN + + N G I Sbjct: 340 IKIRAELKEIETQKTLQKINESRSWFFEKINKIDRPLARLIKKKREKNQIDTIKNDRGDI 399 Query: 1062 TDDPRDIKEMVNDFYQNLYT--FEGVSGVDDVLVHVPETEKVTTTMNDILCTPYTSKEVK 1235 T DP +I+ + ++Y++LY E + +D L ++ + L P TS E++ Sbjct: 400 TTDPTEIQTTIREYYKHLYANKLENLEEMDKFL-DTYTLPRLNQEEVESLNRPITSSEIE 458 Query: 1236 TALFQMFPTKAP 1271 + + K+P Sbjct: 459 AIINSLPNKKSP 470
>O95359:TACC2_HUMAN Transforming acidic coiled-coil-containing protein 2 - Homo sapiens| (Human) Length = 2948 Score = 34.7 bits (78), Expect = 1.5 Identities = 19/57 (33%), Positives = 28/57 (49%) Frame = +3 Query: 42 PNSTRAASFSPADSFGRRRPPVKFEQTRVDHCPFSSPLAPRCPKDPFPLPIALGSYS 212 P T+ P RRP +K ++D+ P S PR P +P +PIA G+Y+ Sbjct: 2283 PPPTKKIGKKPVAKMPLRRPKMKKTPEKLDNTPAS---PPRSPAEPNDIPIAKGTYT 2336
>Q7MA56:RPOBC_WOLSU Bifunctional DNA-directed RNA polymerase, beta and beta' chain -| Wolinella succinogenes Length = 2883 Score = 34.7 bits (78), Expect = 1.5 Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 9/79 (11%) Frame = -2 Query: 1729 SQGGPTWKVTKRESLTLG----ALHLDHIKLE----STQAFCLCFGPL-RKMQTLSTYDV 1577 ++GG KV + LG ++DH L+ + Q C P+ + +T+ V Sbjct: 735 TRGGIVEKVDAKNIYILGEDENGAYIDHYSLQKNLRTNQNTCFSQAPIVHEGETIEAGQV 794 Query: 1576 VGDKPSRDKGRLLLRNNIR 1520 + D P+ DKG L L NIR Sbjct: 795 IADGPNMDKGELALGKNIR 813
>Q9GKT2:CE004_MACFA Uncharacterized protein C5orf4 homolog - Macaca fascicularis (Crab| eating macaque) (Cynomolgus monkey) Length = 333 Score = 34.3 bits (77), Expect = 2.0 Identities = 19/52 (36%), Positives = 23/52 (44%) Frame = -3 Query: 921 PCGTSLPNFHLSLFQCETLVMTGFLENKFQKTGLCVHQPQDYKKSQEKHKIW 766 PC LP FH F E + T E F + +H P YKK +KH W Sbjct: 160 PCRRELPTFHW--FLLELAIFTLIEEVLFYYSHRLLHHPTFYKKIHKKHHEW 209
>Q96IV6:CE004_HUMAN Uncharacterized protein C5orf4 - Homo sapiens (Human)| Length = 333 Score = 34.3 bits (77), Expect = 2.0 Identities = 19/52 (36%), Positives = 23/52 (44%) Frame = -3 Query: 921 PCGTSLPNFHLSLFQCETLVMTGFLENKFQKTGLCVHQPQDYKKSQEKHKIW 766 PC LP FH F E + T E F + +H P YKK +KH W Sbjct: 160 PCRRELPTFHW--FLLELAIFTLIEEVLFYYSHRLLHHPTFYKKIHKKHHEW 209
>P20131:V70K_TYMVA 69 kDa protein - Turnip yellow mosaic virus (isolate Australia)| Length = 628 Score = 33.5 bits (75), Expect = 3.4 Identities = 21/65 (32%), Positives = 30/65 (46%) Frame = +3 Query: 24 RKPPLAPNSTRAASFSPADSFGRRRPPVKFEQTRVDHCPFSSPLAPRCPKDPFPLPIALG 203 R+P LAPN + R+ PP+ + + CP LAP +DP P PI G Sbjct: 216 RRPLLAPNQFNSP---------RQPPPLSDDPGILGPCP----LAPNSTRDPPPRPITPG 262 Query: 204 SYSAH 218 ++ H Sbjct: 263 PFNTH 267
>Q9UKK3:PARP4_HUMAN Poly [ADP-ribose] polymerase 4 - Homo sapiens (Human)| Length = 1724 Score = 33.5 bits (75), Expect = 3.4 Identities = 29/96 (30%), Positives = 39/96 (40%), Gaps = 12/96 (12%) Frame = +3 Query: 39 APNSTRAASFSPADSFGRRRPPVKFEQ----------TRVDHCPFSSPLAPRCPKDPFPL 188 +P S AS+ SFG PP +F+ T D P S+ P++P Sbjct: 1335 SPASLSFASYRQVASFGSAAPPRQFDASQFSQGPVPGTCADWIPQSASCPTGPPQNPPSA 1394 Query: 189 PIALGSYSAHSSGSAQAS--LHHGGTYAHPQAPTRP 290 P +S S SAQ++ H GG P A T P Sbjct: 1395 PYCGIVFSGSSLSSAQSAPLQHPGGFTTRPSAGTFP 1430
>O69629:Y3661_MYCTU Uncharacterized protein Rv3661/MT3761 - Mycobacterium tuberculosis| Length = 287 Score = 32.7 bits (73), Expect = 5.8 Identities = 19/38 (50%), Positives = 23/38 (60%), Gaps = 1/38 (2%) Frame = +2 Query: 368 PRIGAEIHANSVS-SCALRSETNVTGWPHLSVSRPPSL 478 P + A HA+ V+ LR E +V GWP LS SRP SL Sbjct: 210 PMLEAVGHASVVNPDRGLRKEASVRGWPVLSFSRPVSL 247
>Q9JJG0:TACC2_MOUSE Transforming acidic coiled-coil-containing protein 2 - Mus musculus| (Mouse) Length = 1149 Score = 32.3 bits (72), Expect = 7.6 Identities = 18/54 (33%), Positives = 26/54 (48%) Frame = +3 Query: 51 TRAASFSPADSFGRRRPPVKFEQTRVDHCPFSSPLAPRCPKDPFPLPIALGSYS 212 T+ P RRP +K ++D+ P S PR P +P PIA G+Y+ Sbjct: 479 TKKIGKKPVAKMPLRRPKMKKTPEKLDNTPAS---PPRSPTEPSDTPIAKGTYT 529
>Q9QY23:PKP3_MOUSE Plakophilin-3 - Mus musculus (Mouse)| Length = 797 Score = 32.3 bits (72), Expect = 7.6 Identities = 14/27 (51%), Positives = 18/27 (66%) Frame = +3 Query: 210 SAHSSGSAQASLHHGGTYAHPQAPTRP 290 SAH+ GSA ++ +GGT P PTRP Sbjct: 135 SAHNGGSAFGAVGYGGTQPTPPMPTRP 161
>Q9QZZ4:MYO15_MOUSE Myosin-XV - Mus musculus (Mouse)| Length = 3511 Score = 32.3 bits (72), Expect = 7.6 Identities = 29/112 (25%), Positives = 45/112 (40%), Gaps = 8/112 (7%) Frame = +3 Query: 27 KPPLAPNSTRAASFSPADSFGRRRPPVKF--EQTRVDHCPFSSPLAPRCPK------DPF 182 +PP AP S ++ +S DSF P + + H P+ P DP+ Sbjct: 310 EPPYAPPSGYSSPYSYHDSFESEAYPYSYYLDPYATHHMPYPPYDFPYDTPYDIPYFDPY 369 Query: 183 PLPIALGSYSAHSSGSAQASLHHGGTYAHPQAPTRP*PSKIDAVHSPEHVHS 338 +P A G Y G A+A G Y +P+ P P + SP + ++ Sbjct: 370 GVPYAEGVY----GGGAEAIYPPGMPYVYPEEPAFMYPWVPPPIMSPHNPYA 417 Database: uniprot_sprot.fasta.out Posted date: Jul 19, 2007 5:58 PM Number of letters in database: 100,686,439 Number of sequences in database: 274,295 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 274295 Number of Hits to DB: 390,352,531 Number of extensions: 9432510 Number of successful extensions: 23333 Number of sequences better than 10.0: 14 Number of HSP's gapped: 23302 Number of HSP's successfully gapped: 18 Length of query: 668 Length of database: 100,686,439 Length adjustment: 120 Effective length of query: 548 Effective length of database: 67,771,039 Effective search space: 37138529372 Effective search space used: 37138529372 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
