| Clone Name | FLbaf14j06 |
|---|---|
| Clone Library Name | barley_pub |
>emb|CT835190.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA118C23, full insert sequence Length = 1495 Score = 353 bits (178), Expect = 1e-93 Identities = 343/398 (86%) Strand = Plus / Plus Query: 320 aggggccccatcaacgacgtcaagtgcatgaggtacatcctcaccgagcgcttcggcttc 379 ||||||||| |||||||||||||||||||| ||||| ||||| |||||||||||||||| Sbjct: 388 aggggccccgtcaacgacgtcaagtgcatgcggtacctcctctgcgagcgcttcggcttc 447 Query: 380 gccaacgactgcgtcctcatcctcaccgatgaggagagggacccgtgcaggcagcctacc 439 |||||||||||||||||||||||||||| ||||||| ||||||||||||| | | || Sbjct: 448 cccaacgactgcgtcctcatcctcaccgacgaggagaaggacccgtgcaggttggcgacg 507 Query: 440 aaggccaacatccgcatggccatgcattggctggtgcaggggtgcagctccggcgactcc 499 |||| |||||| | ||||| ||| | |||||||||||||||||||||||||| ||||| Sbjct: 508 aaggagaacatcaggatggcgatgaactggctggtgcaggggtgcagctccggtgactcg 567 Query: 500 ctggtgttccagttctccggcgccggcgcgcaggtccccgactgcgacggcgacgagcgg 559 ||||||||||| |||||||| ||| | |||||| || ||| ||||||||||||| | Sbjct: 568 ctggtgttccacttctccgggatcggggtgcaggtgccggacgacgacggcgacgaggtg 627 Query: 560 gacggcatggacgaggccatctgccccgtcgactcgttccagcagggccccatcctggac 619 ||||| |||||||| ||||||||| | ||||||||| |||||||||||||||||| Sbjct: 628 gacgggtacgacgaggcgatctgccccatggactcgttcagccagggccccatcctggac 687 Query: 620 gacgagatcaaccaggccatcgtccgccccctcgtgcacggcgtcaagctccacgccatc 679 |||||||||||| |||||||||||||||| ||||| ||||||| ||||||||||||| || Sbjct: 688 gacgagatcaacgaggccatcgtccgcccgctcgtccacggcgccaagctccacgccgtc 747 Query: 680 gtcgacgcctgccacagtgccaccgtcctcgatctccc 717 ||||||||| ||||| ||||||||||||| ||||| Sbjct: 748 gtcgacgccgagcacagctccaccgtcctcgacctccc 785 Score = 178 bits (90), Expect = 4e-41 Identities = 141/158 (89%) Strand = Plus / Plus Query: 891 tgacgcacagcttcatcaaggcagtggagtgcgagccccgcaccacctacggccgcctgc 950 |||||||||||||||||||||| |||||||||||||| ||| ||||||||||| |||||| Sbjct: 956 tgacgcacagcttcatcaaggcggtggagtgcgagccgcgcgccacctacggcagcctgc 1015 Query: 951 tcacctccatgaggaccaccatgcgcgccggcgccggcaactgcagcctgcaggggcccg 1010 ||||| ||||||||| || |||||||| ||||| || || ||||| ||||||||| ||| Sbjct: 1016 tcaccaccatgaggagcatcatgcgcgacggcggcgtcacctgcaacctgcagggcccca 1075 Query: 1011 tcggctgctccatccgcaaggtcgccaacttcagcggc 1048 ||||| | ||||||||||||||||||||||||||||| Sbjct: 1076 tcggcgcccccatccgcaaggtcgccaacttcagcggc 1113 Score = 48.1 bits (24), Expect = 0.092 Identities = 36/40 (90%) Strand = Plus / Plus Query: 256 ccgcggcaagaagcgcgccgtgctggtcgggatcaagtac 295 ||||||||||||||||||||| ||| |||| |||| |||| Sbjct: 315 ccgcggcaagaagcgcgccgtcctgatcggcatcacgtac 354
>dbj|AK243542.1| Oryza sativa (japonica cultivar-group) cDNA, clone: J100078J12, full insert sequence Length = 1517 Score = 353 bits (178), Expect = 1e-93 Identities = 343/398 (86%) Strand = Plus / Plus Query: 320 aggggccccatcaacgacgtcaagtgcatgaggtacatcctcaccgagcgcttcggcttc 379 ||||||||| |||||||||||||||||||| ||||| ||||| |||||||||||||||| Sbjct: 392 aggggccccgtcaacgacgtcaagtgcatgcggtacctcctctgcgagcgcttcggcttc 451 Query: 380 gccaacgactgcgtcctcatcctcaccgatgaggagagggacccgtgcaggcagcctacc 439 |||||||||||||||||||||||||||| ||||||| ||||||||||||| | | || Sbjct: 452 cccaacgactgcgtcctcatcctcaccgacgaggagaaggacccgtgcaggttggcgacg 511 Query: 440 aaggccaacatccgcatggccatgcattggctggtgcaggggtgcagctccggcgactcc 499 |||| |||||| | ||||| ||| | |||||||||||||||||||||||||| ||||| Sbjct: 512 aaggagaacatcaggatggcgatgaactggctggtgcaggggtgcagctccggtgactcg 571 Query: 500 ctggtgttccagttctccggcgccggcgcgcaggtccccgactgcgacggcgacgagcgg 559 ||||||||||| |||||||| ||| | |||||| || ||| ||||||||||||| | Sbjct: 572 ctggtgttccacttctccgggatcggggtgcaggtgccggacgacgacggcgacgaggtg 631 Query: 560 gacggcatggacgaggccatctgccccgtcgactcgttccagcagggccccatcctggac 619 ||||| |||||||| ||||||||| | ||||||||| |||||||||||||||||| Sbjct: 632 gacgggtacgacgaggcgatctgccccatggactcgttcagccagggccccatcctggac 691 Query: 620 gacgagatcaaccaggccatcgtccgccccctcgtgcacggcgtcaagctccacgccatc 679 |||||||||||| |||||||||||||||| ||||| ||||||| ||||||||||||| || Sbjct: 692 gacgagatcaacgaggccatcgtccgcccgctcgtccacggcgccaagctccacgccgtc 751 Query: 680 gtcgacgcctgccacagtgccaccgtcctcgatctccc 717 ||||||||| ||||| ||||||||||||| ||||| Sbjct: 752 gtcgacgccgagcacagctccaccgtcctcgacctccc 789 Score = 178 bits (90), Expect = 4e-41 Identities = 141/158 (89%) Strand = Plus / Plus Query: 891 tgacgcacagcttcatcaaggcagtggagtgcgagccccgcaccacctacggccgcctgc 950 |||||||||||||||||||||| |||||||||||||| ||| ||||||||||| |||||| Sbjct: 960 tgacgcacagcttcatcaaggcggtggagtgcgagccgcgcgccacctacggcagcctgc 1019 Query: 951 tcacctccatgaggaccaccatgcgcgccggcgccggcaactgcagcctgcaggggcccg 1010 ||||| ||||||||| || |||||||| ||||| || || ||||| ||||||||| ||| Sbjct: 1020 tcaccaccatgaggagcatcatgcgcgacggcggcgtcacctgcaacctgcagggcccca 1079 Query: 1011 tcggctgctccatccgcaaggtcgccaacttcagcggc 1048 ||||| | ||||||||||||||||||||||||||||| Sbjct: 1080 tcggcgcccccatccgcaaggtcgccaacttcagcggc 1117 Score = 48.1 bits (24), Expect = 0.092 Identities = 36/40 (90%) Strand = Plus / Plus Query: 256 ccgcggcaagaagcgcgccgtgctggtcgggatcaagtac 295 ||||||||||||||||||||| ||| |||| |||| |||| Sbjct: 319 ccgcggcaagaagcgcgccgtcctgatcggcatcacgtac 358
>ref|NM_001056802.1| Oryza sativa (japonica cultivar-group) Os03g0388900 (Os03g0388900) mRNA, complete cds Length = 1131 Score = 353 bits (178), Expect = 1e-93 Identities = 343/398 (86%) Strand = Plus / Plus Query: 320 aggggccccatcaacgacgtcaagtgcatgaggtacatcctcaccgagcgcttcggcttc 379 ||||||||| |||||||||||||||||||| ||||| ||||| |||||||||||||||| Sbjct: 316 aggggccccgtcaacgacgtcaagtgcatgcggtacctcctctgcgagcgcttcggcttc 375 Query: 380 gccaacgactgcgtcctcatcctcaccgatgaggagagggacccgtgcaggcagcctacc 439 |||||||||||||||||||||||||||| ||||||| ||||||||||||| | | || Sbjct: 376 cccaacgactgcgtcctcatcctcaccgacgaggagaaggacccgtgcaggttggcgacg 435 Query: 440 aaggccaacatccgcatggccatgcattggctggtgcaggggtgcagctccggcgactcc 499 |||| |||||| | ||||| ||| | |||||||||||||||||||||||||| ||||| Sbjct: 436 aaggagaacatcaggatggcgatgaactggctggtgcaggggtgcagctccggtgactcg 495 Query: 500 ctggtgttccagttctccggcgccggcgcgcaggtccccgactgcgacggcgacgagcgg 559 ||||||||||| |||||||| ||| | |||||| || ||| ||||||||||||| | Sbjct: 496 ctggtgttccacttctccgggatcggggtgcaggtgccggacgacgacggcgacgaggtg 555 Query: 560 gacggcatggacgaggccatctgccccgtcgactcgttccagcagggccccatcctggac 619 ||||| |||||||| ||||||||| | ||||||||| |||||||||||||||||| Sbjct: 556 gacgggtacgacgaggcgatctgccccatggactcgttcagccagggccccatcctggac 615 Query: 620 gacgagatcaaccaggccatcgtccgccccctcgtgcacggcgtcaagctccacgccatc 679 |||||||||||| |||||||||||||||| ||||| ||||||| ||||||||||||| || Sbjct: 616 gacgagatcaacgaggccatcgtccgcccgctcgtccacggcgccaagctccacgccgtc 675 Query: 680 gtcgacgcctgccacagtgccaccgtcctcgatctccc 717 ||||||||| ||||| ||||||||||||| ||||| Sbjct: 676 gtcgacgccgagcacagctccaccgtcctcgacctccc 713 Score = 178 bits (90), Expect = 4e-41 Identities = 141/158 (89%) Strand = Plus / Plus Query: 891 tgacgcacagcttcatcaaggcagtggagtgcgagccccgcaccacctacggccgcctgc 950 |||||||||||||||||||||| |||||||||||||| ||| ||||||||||| |||||| Sbjct: 884 tgacgcacagcttcatcaaggcggtggagtgcgagccgcgcgccacctacggcagcctgc 943 Query: 951 tcacctccatgaggaccaccatgcgcgccggcgccggcaactgcagcctgcaggggcccg 1010 ||||| ||||||||| || |||||||| ||||| || || ||||| ||||||||| ||| Sbjct: 944 tcaccaccatgaggagcatcatgcgcgacggcggcgtcacctgcaacctgcagggcccca 1003 Query: 1011 tcggctgctccatccgcaaggtcgccaacttcagcggc 1048 ||||| | ||||||||||||||||||||||||||||| Sbjct: 1004 tcggcgcccccatccgcaaggtcgccaacttcagcggc 1041 Score = 48.1 bits (24), Expect = 0.092 Identities = 36/40 (90%) Strand = Plus / Plus Query: 256 ccgcggcaagaagcgcgccgtgctggtcgggatcaagtac 295 ||||||||||||||||||||| ||| |||| |||| |||| Sbjct: 243 ccgcggcaagaagcgcgccgtcctgatcggcatcacgtac 282
>gb|AY107563.1| Zea mays PCO093543 mRNA sequence Length = 995 Score = 248 bits (125), Expect = 5e-62 Identities = 242/281 (86%) Strand = Plus / Plus Query: 437 accaaggccaacatccgcatggccatgcattggctggtgcaggggtgcagctccggcgac 496 ||||||| ||||||||| ||||| ||||| ||||||||||||||||||||| ||||||| Sbjct: 39 accaaggacaacatccggatggcgatgcagtggctggtgcaggggtgcagcagcggcgac 98 Query: 497 tccctggtgttccagttctccggcgccggcgcgcaggtccccgactgcgacggcgacgag 556 |||||||||||||| ||||| || |||||||||||| ||||| ||| |||||||| Sbjct: 99 tccctggtgttccacttctctgggctgggcgcgcaggtcgccgacgcggactgcgacgag 158 Query: 557 cgggacggcatggacgaggccatctgccccgtcgactcgttccagcagggccccatcctg 616 | |||||| ||||||||||||||||| || |||||||||||| |||||||||||||| Sbjct: 159 caggacgggtacgacgaggccatctgcccggtggactcgttccagaagggccccatcctg 218 Query: 617 gacgacgagatcaaccaggccatcgtccgccccctcgtgcacggcgtcaagctccacgcc 676 ||||||||||||||| || |||||||||| || || |||| ||||| ||||||||||||| Sbjct: 219 gacgacgagatcaacgagaccatcgtccggccgctggtgcccggcgccaagctccacgcc 278 Query: 677 atcgtcgacgcctgccacagtgccaccgtcctcgatctccc 717 |||||||||| |||||||| | |||||||||| ||||| Sbjct: 279 gtcgtcgacgcgtgccacagcgattccgtcctcgacctccc 319 Score = 73.8 bits (37), Expect = 2e-09 Identities = 66/75 (88%), Gaps = 3/75 (4%) Strand = Plus / Plus Query: 891 tgacgcacagcttcatcaaggcagtggagtgcgagcccc---gcaccacctacggccgcc 947 |||| ||||||||||||||||| ||||| |||||||||| | |||||||||||||| Sbjct: 490 tgacccacagcttcatcaaggcggtggaatgcgagccccagggggtcacctacggccgcc 549 Query: 948 tgctcacctccatga 962 ||||||||||||||| Sbjct: 550 tgctcacctccatga 564 Score = 50.1 bits (25), Expect = 0.023 Identities = 31/33 (93%) Strand = Plus / Plus Query: 1024 ccgcaaggtcgccaacttcagcggcgtggagga 1056 ||||||||||| |||||||||||||||| |||| Sbjct: 626 ccgcaaggtcgtcaacttcagcggcgtgcagga 658
>gb|AC092075.7| Oryza sativa chromosome 3 BAC OSJNBa0017N12 genomic sequence, complete sequence Length = 164705 Score = 230 bits (116), Expect = 1e-56 Identities = 260/308 (84%) Strand = Plus / Plus Query: 410 gaggagagggacccgtgcaggcagcctaccaaggccaacatccgcatggccatgcattgg 469 ||||||| ||||||||||||| | | || |||| |||||| | ||||| ||| | ||| Sbjct: 131457 gaggagaaggacccgtgcaggttggcgacgaaggagaacatcaggatggcgatgaactgg 131516 Query: 470 ctggtgcaggggtgcagctccggcgactccctggtgttccagttctccggcgccggcgcg 529 ||||||||||||||||||||||| ||||| ||||||||||| |||||||| ||| | | Sbjct: 131517 ctggtgcaggggtgcagctccggtgactcgctggtgttccacttctccgggatcggggtg 131576 Query: 530 caggtccccgactgcgacggcgacgagcgggacggcatggacgaggccatctgccccgtc 589 ||||| || ||| ||||||||||||| |||||| |||||||| ||||||||| | Sbjct: 131577 caggtgccggacgacgacggcgacgaggtggacgggtacgacgaggcgatctgccccatg 131636 Query: 590 gactcgttccagcagggccccatcctggacgacgagatcaaccaggccatcgtccgcccc 649 ||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 131637 gactcgttcagccagggccccatcctggacgacgagatcaacgaggccatcgtccgcccg 131696 Query: 650 ctcgtgcacggcgtcaagctccacgccatcgtcgacgcctgccacagtgccaccgtcctc 709 ||||| ||||||| ||||||||||||| ||||||||||| ||||| ||||||||||| Sbjct: 131697 ctcgtccacggcgccaagctccacgccgtcgtcgacgccgagcacagctccaccgtcctc 131756 Query: 710 gatctccc 717 || ||||| Sbjct: 131757 gacctccc 131764 Score = 178 bits (90), Expect = 4e-41 Identities = 141/158 (89%) Strand = Plus / Plus Query: 891 tgacgcacagcttcatcaaggcagtggagtgcgagccccgcaccacctacggccgcctgc 950 |||||||||||||||||||||| |||||||||||||| ||| ||||||||||| |||||| Sbjct: 132018 tgacgcacagcttcatcaaggcggtggagtgcgagccgcgcgccacctacggcagcctgc 132077 Query: 951 tcacctccatgaggaccaccatgcgcgccggcgccggcaactgcagcctgcaggggcccg 1010 ||||| ||||||||| || |||||||| ||||| || || ||||| ||||||||| ||| Sbjct: 132078 tcaccaccatgaggagcatcatgcgcgacggcggcgtcacctgcaacctgcagggcccca 132137 Query: 1011 tcggctgctccatccgcaaggtcgccaacttcagcggc 1048 ||||| | ||||||||||||||||||||||||||||| Sbjct: 132138 tcggcgcccccatccgcaaggtcgccaacttcagcggc 132175 Score = 129 bits (65), Expect = 3e-26 Identities = 86/93 (92%) Strand = Plus / Plus Query: 320 aggggccccatcaacgacgtcaagtgcatgaggtacatcctcaccgagcgcttcggcttc 379 ||||||||| |||||||||||||||||||| ||||| ||||| |||||||||||||||| Sbjct: 131274 aggggccccgtcaacgacgtcaagtgcatgcggtacctcctctgcgagcgcttcggcttc 131333 Query: 380 gccaacgactgcgtcctcatcctcaccgatgag 412 ||||||||||||||||||||||||||| |||| Sbjct: 131334 cccaacgactgcgtcctcatcctcaccggtgag 131366 Score = 77.8 bits (39), Expect = 1e-10 Identities = 90/107 (84%) Strand = Plus / Plus Query: 611 atcctggacgacgagatcaaccaggccatcgtccgccccctcgtgcacggcgtcaagctc 670 ||||| ||||||||||||||| || |||||||||| |||||||| ||||| |||||| Sbjct: 99167 atcctcgacgacgagatcaacgagaccatcgtccggcccctcgtcgccggcgcgaagctc 99226 Query: 671 cacgccatcgtcgacgcctgccacagtgccaccgtcctcgatctccc 717 ||||||||||| ||| | |||||||| | |||| |||| || ||||| Sbjct: 99227 cacgccatcgtggacacgtgccacagcggcaccatcctggacctccc 99273 Score = 71.9 bits (36), Expect = 6e-09 Identities = 90/108 (83%) Strand = Plus / Plus Query: 610 catcctggacgacgagatcaaccaggccatcgtccgccccctcgtgcacggcgtcaagct 669 |||||| ||||||||||||||| || |||||||||| || ||||| |||||| ||||| Sbjct: 77103 catcctcgacgacgagatcaacgagaccatcgtccggccactcgtcgccggcgtgaagct 77162 Query: 670 ccacgccatcgtcgacgcctgccacagtgccaccgtcctcgatctccc 717 ||| |||||||| ||| | |||||||| | |||| |||| || ||||| Sbjct: 77163 ccatgccatcgtggacacgtgccacagcggcaccatcctggacctccc 77210 Score = 67.9 bits (34), Expect = 1e-07 Identities = 49/54 (90%) Strand = Plus / Plus Query: 467 tggctggtgcaggggtgcagctccggcgactccctggtgttccagttctccggc 520 ||||||||| |||||||| || |||||||||| ||||||||||| ||||||||| Sbjct: 91577 tggctggtggaggggtgccgcgccggcgactcgctggtgttccacttctccggc 91630 Score = 52.0 bits (26), Expect = 0.006 Identities = 47/54 (87%) Strand = Plus / Plus Query: 467 tggctggtgcaggggtgcagctccggcgactccctggtgttccagttctccggc 520 ||||||||| | |||||| | |||||||||| ||||||||||| ||||||||| Sbjct: 99023 tggctggtggaagggtgcgacgccggcgactcgctggtgttccacttctccggc 99076 Score = 50.1 bits (25), Expect = 0.023 Identities = 76/93 (81%) Strand = Plus / Plus Query: 313 cgagctcaggggccccatcaacgacgtcaagtgcatgaggtacatcctcaccgagcgctt 372 |||||||| |||| || ||||||||||||| |||||| | | ||||| ||||||||| Sbjct: 76732 cgagctcaagggcaccgtcaacgacgtcaactgcatgtccttcctcctccgcgagcgctt 76791 Query: 373 cggcttcgccaacgactgcgtcctcatcctcac 405 || |||| || ||||||| ||||| ||||||| Sbjct: 76792 cgccttccccgccgactgcatcctcgtcctcac 76824 Score = 48.1 bits (24), Expect = 0.092 Identities = 36/40 (90%) Strand = Plus / Plus Query: 256 ccgcggcaagaagcgcgccgtgctggtcgggatcaagtac 295 ||||||||||||||||||||| ||| |||| |||| |||| Sbjct: 131201 ccgcggcaagaagcgcgccgtcctgatcggcatcacgtac 131240 Score = 42.1 bits (21), Expect = 5.7 Identities = 27/29 (93%) Strand = Plus / Plus Query: 891 tgacgcacagcttcatcaaggcagtggag 919 ||||| |||||||||||||||| |||||| Sbjct: 78094 tgacgtacagcttcatcaaggcggtggag 78122
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3 Length = 36192742 Score = 230 bits (116), Expect = 1e-56 Identities = 260/308 (84%) Strand = Plus / Minus Query: 410 gaggagagggacccgtgcaggcagcctaccaaggccaacatccgcatggccatgcattgg 469 ||||||| ||||||||||||| | | || |||| |||||| | ||||| ||| | ||| Sbjct: 15364603 gaggagaaggacccgtgcaggttggcgacgaaggagaacatcaggatggcgatgaactgg 15364544 Query: 470 ctggtgcaggggtgcagctccggcgactccctggtgttccagttctccggcgccggcgcg 529 ||||||||||||||||||||||| ||||| ||||||||||| |||||||| ||| | | Sbjct: 15364543 ctggtgcaggggtgcagctccggtgactcgctggtgttccacttctccgggatcggggtg 15364484 Query: 530 caggtccccgactgcgacggcgacgagcgggacggcatggacgaggccatctgccccgtc 589 ||||| || ||| ||||||||||||| |||||| |||||||| ||||||||| | Sbjct: 15364483 caggtgccggacgacgacggcgacgaggtggacgggtacgacgaggcgatctgccccatg 15364424 Query: 590 gactcgttccagcagggccccatcctggacgacgagatcaaccaggccatcgtccgcccc 649 ||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 15364423 gactcgttcagccagggccccatcctggacgacgagatcaacgaggccatcgtccgcccg 15364364 Query: 650 ctcgtgcacggcgtcaagctccacgccatcgtcgacgcctgccacagtgccaccgtcctc 709 ||||| ||||||| ||||||||||||| ||||||||||| ||||| ||||||||||| Sbjct: 15364363 ctcgtccacggcgccaagctccacgccgtcgtcgacgccgagcacagctccaccgtcctc 15364304 Query: 710 gatctccc 717 || ||||| Sbjct: 15364303 gacctccc 15364296 Score = 178 bits (90), Expect = 4e-41 Identities = 141/158 (89%) Strand = Plus / Minus Query: 891 tgacgcacagcttcatcaaggcagtggagtgcgagccccgcaccacctacggccgcctgc 950 |||||||||||||||||||||| |||||||||||||| ||| ||||||||||| |||||| Sbjct: 15364042 tgacgcacagcttcatcaaggcggtggagtgcgagccgcgcgccacctacggcagcctgc 15363983 Query: 951 tcacctccatgaggaccaccatgcgcgccggcgccggcaactgcagcctgcaggggcccg 1010 ||||| ||||||||| || |||||||| ||||| || || ||||| ||||||||| ||| Sbjct: 15363982 tcaccaccatgaggagcatcatgcgcgacggcggcgtcacctgcaacctgcagggcccca 15363923 Query: 1011 tcggctgctccatccgcaaggtcgccaacttcagcggc 1048 ||||| | ||||||||||||||||||||||||||||| Sbjct: 15363922 tcggcgcccccatccgcaaggtcgccaacttcagcggc 15363885 Score = 129 bits (65), Expect = 3e-26 Identities = 86/93 (92%) Strand = Plus / Minus Query: 320 aggggccccatcaacgacgtcaagtgcatgaggtacatcctcaccgagcgcttcggcttc 379 ||||||||| |||||||||||||||||||| ||||| ||||| |||||||||||||||| Sbjct: 15364786 aggggccccgtcaacgacgtcaagtgcatgcggtacctcctctgcgagcgcttcggcttc 15364727 Query: 380 gccaacgactgcgtcctcatcctcaccgatgag 412 ||||||||||||||||||||||||||| |||| Sbjct: 15364726 cccaacgactgcgtcctcatcctcaccggtgag 15364694 Score = 77.8 bits (39), Expect = 1e-10 Identities = 90/107 (84%) Strand = Plus / Minus Query: 611 atcctggacgacgagatcaaccaggccatcgtccgccccctcgtgcacggcgtcaagctc 670 ||||| ||||||||||||||| || |||||||||| |||||||| ||||| |||||| Sbjct: 15396893 atcctcgacgacgagatcaacgagaccatcgtccggcccctcgtcgccggcgcgaagctc 15396834 Query: 671 cacgccatcgtcgacgcctgccacagtgccaccgtcctcgatctccc 717 ||||||||||| ||| | |||||||| | |||| |||| || ||||| Sbjct: 15396833 cacgccatcgtggacacgtgccacagcggcaccatcctggacctccc 15396787 Score = 71.9 bits (36), Expect = 6e-09 Identities = 90/108 (83%) Strand = Plus / Minus Query: 610 catcctggacgacgagatcaaccaggccatcgtccgccccctcgtgcacggcgtcaagct 669 |||||| ||||||||||||||| || |||||||||| || ||||| |||||| ||||| Sbjct: 15418957 catcctcgacgacgagatcaacgagaccatcgtccggccactcgtcgccggcgtgaagct 15418898 Query: 670 ccacgccatcgtcgacgcctgccacagtgccaccgtcctcgatctccc 717 ||| |||||||| ||| | |||||||| | |||| |||| || ||||| Sbjct: 15418897 ccatgccatcgtggacacgtgccacagcggcaccatcctggacctccc 15418850 Score = 67.9 bits (34), Expect = 1e-07 Identities = 49/54 (90%) Strand = Plus / Minus Query: 467 tggctggtgcaggggtgcagctccggcgactccctggtgttccagttctccggc 520 ||||||||| |||||||| || |||||||||| ||||||||||| ||||||||| Sbjct: 15404483 tggctggtggaggggtgccgcgccggcgactcgctggtgttccacttctccggc 15404430 Score = 52.0 bits (26), Expect = 0.006 Identities = 47/54 (87%) Strand = Plus / Minus Query: 467 tggctggtgcaggggtgcagctccggcgactccctggtgttccagttctccggc 520 ||||||||| | |||||| | |||||||||| ||||||||||| ||||||||| Sbjct: 15397037 tggctggtggaagggtgcgacgccggcgactcgctggtgttccacttctccggc 15396984 Score = 50.1 bits (25), Expect = 0.023 Identities = 76/93 (81%) Strand = Plus / Minus Query: 313 cgagctcaggggccccatcaacgacgtcaagtgcatgaggtacatcctcaccgagcgctt 372 |||||||| |||| || ||||||||||||| |||||| | | ||||| ||||||||| Sbjct: 15419328 cgagctcaagggcaccgtcaacgacgtcaactgcatgtccttcctcctccgcgagcgctt 15419269 Query: 373 cggcttcgccaacgactgcgtcctcatcctcac 405 || |||| || ||||||| ||||| ||||||| Sbjct: 15419268 cgccttccccgccgactgcatcctcgtcctcac 15419236 Score = 48.1 bits (24), Expect = 0.092 Identities = 36/40 (90%) Strand = Plus / Minus Query: 256 ccgcggcaagaagcgcgccgtgctggtcgggatcaagtac 295 ||||||||||||||||||||| ||| |||| |||| |||| Sbjct: 15364859 ccgcggcaagaagcgcgccgtcctgatcggcatcacgtac 15364820 Score = 42.1 bits (21), Expect = 5.7 Identities = 27/29 (93%) Strand = Plus / Minus Query: 891 tgacgcacagcttcatcaaggcagtggag 919 ||||| |||||||||||||||| |||||| Sbjct: 15417966 tgacgtacagcttcatcaaggcggtggag 15417938
>ref|NM_001056803.1| Oryza sativa (japonica cultivar-group) Os03g0389000 (Os03g0389000) mRNA, complete cds Length = 1203 Score = 77.8 bits (39), Expect = 1e-10 Identities = 90/107 (84%) Strand = Plus / Plus Query: 611 atcctggacgacgagatcaaccaggccatcgtccgccccctcgtgcacggcgtcaagctc 670 ||||| ||||||||||||||| || |||||||||| |||||||| ||||| |||||| Sbjct: 673 atcctcgacgacgagatcaacgagaccatcgtccggcccctcgtcgccggcgcgaagctc 732 Query: 671 cacgccatcgtcgacgcctgccacagtgccaccgtcctcgatctccc 717 ||||||||||| ||| | |||||||| | |||| |||| || ||||| Sbjct: 733 cacgccatcgtggacacgtgccacagcggcaccatcctggacctccc 779 Score = 52.0 bits (26), Expect = 0.006 Identities = 47/54 (87%) Strand = Plus / Plus Query: 467 tggctggtgcaggggtgcagctccggcgactccctggtgttccagttctccggc 520 ||||||||| | |||||| | |||||||||| ||||||||||| ||||||||| Sbjct: 529 tggctggtggaagggtgcgacgccggcgactcgctggtgttccacttctccggc 582
>ref|NM_001056805.1| Oryza sativa (japonica cultivar-group) Os03g0389400 (Os03g0389400) mRNA, complete cds Length = 1110 Score = 71.9 bits (36), Expect = 6e-09 Identities = 90/108 (83%) Strand = Plus / Plus Query: 610 catcctggacgacgagatcaaccaggccatcgtccgccccctcgtgcacggcgtcaagct 669 |||||| ||||||||||||||| || |||||||||| || ||||| |||||| ||||| Sbjct: 606 catcctcgacgacgagatcaacgagaccatcgtccggccactcgtcgccggcgtgaagct 665 Query: 670 ccacgccatcgtcgacgcctgccacagtgccaccgtcctcgatctccc 717 ||| |||||||| ||| | |||||||| | |||| |||| || ||||| Sbjct: 666 ccatgccatcgtggacacgtgccacagcggcaccatcctggacctccc 713 Score = 50.1 bits (25), Expect = 0.023 Identities = 76/93 (81%) Strand = Plus / Plus Query: 313 cgagctcaggggccccatcaacgacgtcaagtgcatgaggtacatcctcaccgagcgctt 372 |||||||| |||| || ||||||||||||| |||||| | | ||||| ||||||||| Sbjct: 309 cgagctcaagggcaccgtcaacgacgtcaactgcatgtccttcctcctccgcgagcgctt 368 Query: 373 cggcttcgccaacgactgcgtcctcatcctcac 405 || |||| || ||||||| ||||| ||||||| Sbjct: 369 cgccttccccgccgactgcatcctcgtcctcac 401 Score = 42.1 bits (21), Expect = 5.7 Identities = 27/29 (93%) Strand = Plus / Plus Query: 891 tgacgcacagcttcatcaaggcagtggag 919 ||||| |||||||||||||||| |||||| Sbjct: 887 tgacgtacagcttcatcaaggcggtggag 915
>ref|NM_001056804.1| Oryza sativa (japonica cultivar-group) Os03g0389100 (Os03g0389100) mRNA, complete cds Length = 1347 Score = 67.9 bits (34), Expect = 1e-07 Identities = 49/54 (90%) Strand = Plus / Plus Query: 467 tggctggtgcaggggtgcagctccggcgactccctggtgttccagttctccggc 520 ||||||||| |||||||| || |||||||||| ||||||||||| ||||||||| Sbjct: 260 tggctggtggaggggtgccgcgccggcgactcgctggtgttccacttctccggc 313
>dbj|AK063170.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-110-G09, full insert sequence Length = 1347 Score = 67.9 bits (34), Expect = 1e-07 Identities = 49/54 (90%) Strand = Plus / Plus Query: 467 tggctggtgcaggggtgcagctccggcgactccctggtgttccagttctccggc 520 ||||||||| |||||||| || |||||||||| ||||||||||| ||||||||| Sbjct: 260 tggctggtggaggggtgccgcgccggcgactcgctggtgttccacttctccggc 313
>emb|CT835269.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN062L14, full insert sequence Length = 853 Score = 50.1 bits (25), Expect = 0.023 Identities = 76/93 (81%) Strand = Plus / Plus Query: 313 cgagctcaggggccccatcaacgacgtcaagtgcatgaggtacatcctcaccgagcgctt 372 |||||||| |||| || ||||||||||||| |||||| | | ||||| ||||||||| Sbjct: 538 cgagctcaagggcaccgtcaacgacgtcaactgcatgtccttcctcctccgcgagcgctt 597 Query: 373 cggcttcgccaacgactgcgtcctcatcctcac 405 || |||| || ||||||| ||||| ||||||| Sbjct: 598 cgccttccccgccgactgcatcctcgtcctcac 630
>gb|CP000110.1| Synechococcus sp. CC9605, complete genome Length = 2510659 Score = 46.1 bits (23), Expect = 0.36 Identities = 23/23 (100%) Strand = Plus / Minus Query: 798 ccagcggaggccgggccgtgctc 820 ||||||||||||||||||||||| Sbjct: 702979 ccagcggaggccgggccgtgctc 702957
>dbj|AP008230.1| Desulfitobacterium hafniense Y51 genomic DNA, complete genome Length = 5727534 Score = 46.1 bits (23), Expect = 0.36 Identities = 23/23 (100%) Strand = Plus / Minus Query: 386 gactgcgtcctcatcctcaccga 408 ||||||||||||||||||||||| Sbjct: 3788597 gactgcgtcctcatcctcaccga 3788575
>ref|XM_001176630.1| PREDICTED: Strongylocentrotus purpuratus similar to CG3456-PA (LOC593204), mRNA Length = 2027 Score = 44.1 bits (22), Expect = 1.4 Identities = 22/22 (100%) Strand = Plus / Plus Query: 354 acatcctcaccgagcgcttcgg 375 |||||||||||||||||||||| Sbjct: 248 acatcctcaccgagcgcttcgg 269
>ref|XM_792692.2| PREDICTED: Strongylocentrotus purpuratus similar to CG3456-PA (LOC593204), mRNA Length = 2035 Score = 44.1 bits (22), Expect = 1.4 Identities = 22/22 (100%) Strand = Plus / Plus Query: 354 acatcctcaccgagcgcttcgg 375 |||||||||||||||||||||| Sbjct: 256 acatcctcaccgagcgcttcgg 277
>gb|AF055914.1|AF055914 Crithidia fasciculata tryparedoxin peroxidase (TryP) gene, complete cds Length = 1518 Score = 44.1 bits (22), Expect = 1.4 Identities = 22/22 (100%) Strand = Plus / Minus Query: 828 gcagcagcaacgggaagaccca 849 |||||||||||||||||||||| Sbjct: 37 gcagcagcaacgggaagaccca 16
>ref|XM_001227783.1| Chaetomium globosum CBS 148.51 hypothetical protein (CHGG_09857) mRNA, complete cds Length = 1794 Score = 42.1 bits (21), Expect = 5.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 516 ccggcgccggcgcgcaggtcc 536 ||||||||||||||||||||| Sbjct: 1343 ccggcgccggcgcgcaggtcc 1363
>ref|XM_001190046.1| PREDICTED: Strongylocentrotus purpuratus similar to Centrosome- and Golgi-localized PKN-associated protein (CG-NAP) (LOC582174), mRNA Length = 10056 Score = 42.1 bits (21), Expect = 5.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 401 ctcaccgatgaggagagggac 421 ||||||||||||||||||||| Sbjct: 2569 ctcaccgatgaggagagggac 2589
>ref|XM_782137.2| PREDICTED: Strongylocentrotus purpuratus similar to Centrosome- and Golgi-localized PKN-associated protein (CG-NAP) (LOC582174), mRNA Length = 10056 Score = 42.1 bits (21), Expect = 5.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 401 ctcaccgatgaggagagggac 421 ||||||||||||||||||||| Sbjct: 2569 ctcaccgatgaggagagggac 2589
>ref|XM_001218971.1| Trypanosoma brucei hypothetical protein, conserved (Tb927.1.2730) mRNA, complete cds Length = 1065 Score = 42.1 bits (21), Expect = 5.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 819 tcatcagcggcagcagcaacgggaa 843 |||||||| |||||||||||||||| Sbjct: 109 tcatcagcagcagcagcaacgggaa 133
>ref|NM_001064104.1| Oryza sativa (japonica cultivar-group) Os06g0342000 (Os06g0342000) mRNA, complete cds Length = 2184 Score = 42.1 bits (21), Expect = 5.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 688 ctgccacagtgccaccgtcctcgat 712 ||||||||||||||||| ||||||| Sbjct: 2008 ctgccacagtgccaccgccctcgat 2032
>ref|XM_001056095.1| PREDICTED: Rattus norvegicus kringle containing transmembrane protein 2 (predicted) (Kremen2_predicted), mRNA Length = 1473 Score = 42.1 bits (21), Expect = 5.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 825 gcggcagcagcaacgggaaga 845 ||||||||||||||||||||| Sbjct: 139 gcggcagcagcaacgggaaga 119
>ref|XM_220206.4| PREDICTED: Rattus norvegicus kringle containing transmembrane protein 2 (predicted) (Kremen2_predicted), mRNA Length = 1473 Score = 42.1 bits (21), Expect = 5.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 825 gcggcagcagcaacgggaaga 845 ||||||||||||||||||||| Sbjct: 139 gcggcagcagcaacgggaaga 119
>emb|AL929603.2|TBBCHR1A1 Trypanosoma brucei chromosome 1, complete sequence Length = 1064672 Score = 42.1 bits (21), Expect = 5.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 819 tcatcagcggcagcagcaacgggaa 843 |||||||| |||||||||||||||| Sbjct: 628982 tcatcagcagcagcagcaacgggaa 629006
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome Length = 4892717 Score = 42.1 bits (21), Expect = 5.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 672 acgccatcgtcgacgcctgcc 692 ||||||||||||||||||||| Sbjct: 2442289 acgccatcgtcgacgcctgcc 2442309
>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome Length = 3188609 Score = 42.1 bits (21), Expect = 5.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 508 ccagttctccggcgccggcgcgcag 532 ||||||||||||||||| ||||||| Sbjct: 785167 ccagttctccggcgccgtcgcgcag 785191
>gb|AC121275.20| Mus musculus chromosome 8, clone RP24-234C3, complete sequence Length = 158075 Score = 42.1 bits (21), Expect = 5.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 163 cgtccagtgcatgcagtgctg 183 ||||||||||||||||||||| Sbjct: 137240 cgtccagtgcatgcagtgctg 137260
>gb|AE006739.1| Sulfolobus solfataricus P2 section 98 of 272 of the complete genome Length = 10029 Score = 42.1 bits (21), Expect = 5.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1397 ttgtggtcgtgtgtgtcgtct 1417 ||||||||||||||||||||| Sbjct: 5527 ttgtggtcgtgtgtgtcgtct 5547
>gb|AC128768.4| Rattus norvegicus 1 BAC CH230-445L3 (Children's Hospital Oakland Research Institute) complete sequence Length = 156228 Score = 42.1 bits (21), Expect = 5.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 45 aacccacccacccaggtagct 65 ||||||||||||||||||||| Sbjct: 89312 aacccacccacccaggtagct 89292
>ref|XM_757199.1| Ustilago maydis 521 hypothetical protein (UM06145.1) partial mRNA Length = 2649 Score = 42.1 bits (21), Expect = 5.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 254 ggccgcggcaagaagcgcgcc 274 ||||||||||||||||||||| Sbjct: 10 ggccgcggcaagaagcgcgcc 30
>ref|XM_757567.1| Ustilago maydis 521 hypothetical protein (UM06513.1) partial mRNA Length = 435 Score = 42.1 bits (21), Expect = 5.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 254 ggccgcggcaagaagcgcgcc 274 ||||||||||||||||||||| Sbjct: 10 ggccgcggcaagaagcgcgcc 30
>ref|XM_756120.1| Ustilago maydis 521 hypothetical protein (UM05066.1) partial mRNA Length = 2874 Score = 42.1 bits (21), Expect = 5.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 254 ggccgcggcaagaagcgcgcc 274 ||||||||||||||||||||| Sbjct: 10 ggccgcggcaagaagcgcgcc 30
>ref|XM_755941.1| Ustilago maydis 521 hypothetical protein (UM04887.1) partial mRNA Length = 2925 Score = 42.1 bits (21), Expect = 5.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 254 ggccgcggcaagaagcgcgcc 274 ||||||||||||||||||||| Sbjct: 10 ggccgcggcaagaagcgcgcc 30
>ref|XM_753559.1| Ustilago maydis 521 hypothetical protein (UM02505.1) partial mRNA Length = 2676 Score = 42.1 bits (21), Expect = 5.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 254 ggccgcggcaagaagcgcgcc 274 ||||||||||||||||||||| Sbjct: 10 ggccgcggcaagaagcgcgcc 30
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6 Length = 30731886 Score = 42.1 bits (21), Expect = 5.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 688 ctgccacagtgccaccgtcctcgat 712 ||||||||||||||||| ||||||| Sbjct: 13517027 ctgccacagtgccaccgccctcgat 13517003
>dbj|AB051738.1| Uncultured microorganism PCRLD12 gene for phenol hydroxylase large subunit, partial cds Length = 630 Score = 42.1 bits (21), Expect = 5.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 665 aagctccacgccatcgtcgacgcct 689 |||||| |||||||||||||||||| Sbjct: 58 aagctctacgccatcgtcgacgcct 82
>emb|AL939120.1|SCO939120 Streptomyces coelicolor A3(2) complete genome; segment 17/29 Length = 248550 Score = 42.1 bits (21), Expect = 5.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 506 ttccagttctccggcgccggcgcgc 530 |||| |||||||||||||||||||| Sbjct: 77025 ttcctgttctccggcgccggcgcgc 77049
>dbj|AP003572.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0459H02 Length = 168230 Score = 42.1 bits (21), Expect = 5.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 688 ctgccacagtgccaccgtcctcgat 712 ||||||||||||||||| ||||||| Sbjct: 45517 ctgccacagtgccaccgccctcgat 45493
>dbj|AP003506.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0428A03 Length = 136799 Score = 42.1 bits (21), Expect = 5.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 688 ctgccacagtgccaccgtcctcgat 712 ||||||||||||||||| ||||||| Sbjct: 128451 ctgccacagtgccaccgccctcgat 128427
>dbj|AK101619.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033052I18, full insert sequence Length = 2185 Score = 42.1 bits (21), Expect = 5.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 688 ctgccacagtgccaccgtcctcgat 712 ||||||||||||||||| ||||||| Sbjct: 2009 ctgccacagtgccaccgccctcgat 2033
>gb|AE015451.1| Pseudomonas putida KT2440 complete genome Length = 6181863 Score = 42.1 bits (21), Expect = 5.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 426 gcaggcagcctaccaaggcca 446 ||||||||||||||||||||| Sbjct: 5824331 gcaggcagcctaccaaggcca 5824311
>gb|U23762.1|SPU23762 Streptomyces phaeochromogenes plasmid pJV1, complete sequence Length = 11143 Score = 42.1 bits (21), Expect = 5.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 238 ccccaacttcggcggcggccgcggc 262 ||||||| ||||||||||||||||| Sbjct: 1999 ccccaacctcggcggcggccgcggc 2023
>dbj|AB021679.1| Streptomyces coelicolor pkaG gene for eukaryotic-type serine/threonine protein kinase, complete cds Length = 2861 Score = 42.1 bits (21), Expect = 5.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 506 ttccagttctccggcgccggcgcgc 530 |||| |||||||||||||||||||| Sbjct: 1582 ttcctgttctccggcgccggcgcgc 1606 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 211,495,230 Number of extensions: 11003772 Number of successful extensions: 270755 Number of sequences better than 10.0: 43 Number of HSP's gapped: 270739 Number of HSP's successfully gapped: 73 Length of query: 1487 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 1464 Effective length of database: 18,503,978,556 Effective search space: 27089824605984 Effective search space used: 27089824605984 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)