ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf17g21
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1Q8KCG8:FMT_CHLTE Methionyl-tRNA formyltransferase - Chlorobium t... 31 4.7

>Q8KCG8:FMT_CHLTE Methionyl-tRNA formyltransferase - Chlorobium tepidum|
          Length = 314
 Score = 30.8 bits (68), Expect = 4.7
 Identities = 29/107 (27%), Positives = 48/107 (44%), Gaps = 2/107 (1%)
 Frame = +2

Query: 86  VLLFSLQAAVDGGRLFSNSRVTIGPSCPVGQLLKCRKLFPPTGCRCVPVSNLGPVGAHIL 265
           V  F LQ +VD G + +  R  IGP     +LLK                 L  +GA  +
Sbjct: 137 VTTFFLQKSVDTGNIITMDRTPIGPDENAFELLK----------------RLSEIGAGTV 180

Query: 266 PQ--HMVANGVTWLPRYVQDDQAIASVSKEDNRINYRCEQDCPSERI 400
            +   M+A+G   +P   + D+  A+ + + NR N R + + P +R+
Sbjct: 181 ERTLTMIADGAV-MPE--KQDERFATKAPKLNRENTRIDWNQPVQRL 224


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 113,228,489
Number of extensions: 2427679
Number of successful extensions: 5633
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5633
Number of HSP's successfully gapped: 1
Length of query: 221
Length of database: 100,686,439
Length adjustment: 109
Effective length of query: 112
Effective length of database: 70,788,284
Effective search space: 7928287808
Effective search space used: 7928287808
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top