ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf23h04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1LOC_Os03g52130:12003.t04539:unspliced-genomic expressed protein 80 3e-34
2LOC_Os02g06830:12002.t00580:unspliced-genomic expressed protein 30 0.25
3LOC_Os02g01730:12002.t00073:unspliced-genomic senescence-ind... 35 0.97
4LOC_Os05g30870:12005.t02686:unspliced-genomic serine/threoni... 26 1.3
5LOC_Os03g61290:12003.t05362:unspliced-genomic ATCHX19, putat... 33 2.5
6LOC_Os01g67650:12001.t06122:unspliced-genomic DELLA protein ... 26 4.7
7LOC_Os06g06910:12006.t00576:unspliced-genomic expressed protein 32 4.7
8LOC_Os03g48040:12003.t05706:unspliced-genomic ferredoxin-6, ... 32 4.8
9LOC_Os06g27830:12006.t02488:unspliced-genomic WRKY transcrip... 32 6.5
10LOC_Os03g19730:12003.t05688:unspliced-genomic expressed protein 32 6.5
11LOC_Os03g50290:12003.t04371:unspliced-genomic 14-3-3-like pr... 30 7.5
12LOC_Os09g27780:12009.t02456:unspliced-genomic retrotransposo... 31 8.9
13LOC_Os06g17280:12006.t01600:unspliced-genomic PHD-finger fam... 31 8.9
14LOC_Os02g57310:12002.t05303:unspliced-genomic resistance pro... 31 8.9
15LOC_Os02g07730:12002.t00669:unspliced-genomic catalytic/ hyd... 31 8.9
16LOC_Os11g02159:12011.t004388:unspliced-genomic expressed pro... 31 9.0
17LOC_Os07g26540:12007.t02351:unspliced-genomic hexokinase-1, ... 31 9.0
18LOC_Os03g63420:12003.t05559:unspliced-genomic OsGrx_S14 - gl... 31 9.0

>LOC_Os03g52130:12003.t04539:unspliced-genomic expressed protein|
          Length = 1344
 Score = 79.9 bits (168), Expect(4) = 3e-34
 Identities = 30/40 (75%), Positives = 35/40 (87%)
 Frame = +2 / +1

                                                    
Query: 308  YKRNYKDYFGFMEGPVREKPAEQLTESEKGILAWLDKNK* 427
            YKRNY+DYFG +EGP R+K  ++LTESEKGIL WLDKNK*
Sbjct: 964  YKRNYRDYFGLIEGPARQKNEDELTESEKGILEWLDKNK* 1083



 Score = 58.8 bits (122), Expect(4) = 3e-34
 Identities = 25/40 (62%), Positives = 26/40 (65%)
 Frame = +3 / +3

                                                   
Query: 129 SIWSPWLRGMELTGGASSLCWHPSQPYPRRVNQERPYCKI 248
           S W  WLRG  L GGA SL   P QPY R VNQER YCK+
Sbjct: 156 SHWPCWLRGTALAGGAFSLSSPPLQPYLRLVNQERLYCKV 275



 Score = 43.2 bits (88), Expect(4) = 3e-34
 Identities = 20/35 (57%), Positives = 23/35 (65%)
 Frame = +3 / +3

                                              
Query: 42  IPRLSLQVN*WTQSEGRSQQLHLFIIQRQSIWSPW 146
           +P LS + N WTQS G SQQL  FI Q+Q I S W
Sbjct: 60  LPWLSPKGNWWTQSGGHSQQLQRFIDQQQGISSHW 164



 Score = 25.8 bits (50), Expect(4) = 3e-34
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = +3 / +1

                             
Query: 249 M*RDQRKIKKRMTRRGGT 302
           +*R+QRK KKR T+R  T
Sbjct: 376 I*RNQRKTKKRTTKRYAT 429



 Score = 59.3 bits (123), Expect(5) = 1e-32
 Identities = 25/33 (75%), Positives = 28/33 (84%)
 Frame = -2 / -2

                                             
Query: 426  YLFLSSHARIPFSDSVSCSAGFSLTGPSMNPK* 328
            YLFLSSH+RIPFSDSVS S+ F L GPS+ PK*
Sbjct: 1082 YLFLSSHSRIPFSDSVSSSSFFCLAGPSIRPK* 984



 Score = 57.4 bits (119), Expect(5) = 1e-32
 Identities = 24/38 (63%), Positives = 29/38 (76%)
 Frame = -1 / -3

                                                 
Query: 241 Q*GLS*FTRLGYGCDGCQQSEEAPPVNSIPLSQGDQML 128
           Q* LS*FT L YGC G ++SE+APP N++PLSQ  Q L
Sbjct: 268 Q*SLS*FTSLRYGCSGGEESEKAPPANAVPLSQHGQWL 155



 Score = 48.7 bits (100), Expect(5) = 1e-32
 Identities = 20/31 (64%), Positives = 22/31 (70%)
 Frame = -1 / -3

                                          
Query: 136 QMLCR*MMKR*SCCDRPSDCVHQFTWRLSRG 44
           +M C * MKR*SCC+ P DCVHQF   LS G
Sbjct: 154 EMPCC*SMKR*SCCEWPPDCVHQFPLGLSHG 62



 Score = 27.6 bits (54), Expect(5) = 1e-32
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = -3 / -3

                          
Query: 335 QNNPCNSFCKRRPAS 291
           Q+NPCNS C  R AS
Sbjct: 991 QSNPCNSSCSSRLAS 947



 Score = 27.2 bits (53), Expect(5) = 1e-32
 Identities = 11/15 (73%), Positives = 11/15 (73%)
 Frame = -3 / -1

                          
Query: 287 CHSFLYFPLISSHNL 243
           C SFL FPLISS  L
Sbjct: 414 CRSFLCFPLISSDTL 370



 Score = 48.3 bits (99), Expect(4) = 3e-16
 Identities = 25/47 (53%), Positives = 30/47 (63%)
 Frame = +1 / +3

                                                           
Query: 292  EAGRRLQKELQGLFWIHGRAGQREASRAAHGVGERNSRVAGQE*VAR 432
            EA R LQ+ELQGL W      + E  R A+ VGERNSR+A QE + R
Sbjct: 948  EARRLLQEELQGLLWSDRGPCKTEE*R*AYRVGERNSRMA*QEQIVR 1088



 Score = 40.9 bits (83), Expect(4) = 3e-16
 Identities = 21/37 (56%), Positives = 23/37 (62%)
 Frame = +1 / +1

                                                
Query: 136 GHLGSEEWS*QEVPPHSAGIRRSRTRGE*IKKGPIAR 246
           GH+GSEE  *QE P H   +  S T G *IKKG  AR
Sbjct: 163 GHVGSEERH*QEGPSHFPHLHCSHT*GW*IKKGSTAR 273



 Score = 31.8 bits (63), Expect(4) = 3e-16
 Identities = 12/14 (85%), Positives = 13/14 (92%)
 Frame = +2 / +2

                         
Query: 50  AQPPGKLMDTIRRP 91
           AQP GKL+DTIRRP
Sbjct: 68  AQPQGKLVDTIRRP 109



 Score = 24.4 bits (47), Expect(4) = 3e-16
 Identities = 11/15 (73%), Positives = 12/15 (80%)
 Frame = +1 / +2

                          
Query: 244 RLCEEIKGK*RKE*Q 288
           R+ EEIKGK RKE Q
Sbjct: 371 RVSEEIKGKQRKERQ 415



 Score = 51.5 bits (106), Expect(2) = 1e-12
 Identities = 23/35 (65%), Positives = 27/35 (77%)
 Frame = -2 / -1

                                              
Query: 243 CNRAFLDSLASGTAATDASRVRRHLLLTPFL*AKV 139
           C+RAFLDS ASG AA +  +VRR LLL PFL*A +
Sbjct: 270 CSRAFLDSPASGMAAVEVRKVRRPLLLMPFL*ANM 166



 Score = 41.4 bits (84), Expect(2) = 1e-12
 Identities = 20/30 (66%), Positives = 21/30 (70%)
 Frame = -3 / -2

                                         
Query: 134 DALPLNDEEMKLLRPAF*LCPSVYLEAEPW 45
           DAL L DE +KLL  A *LCP V L AEPW
Sbjct: 152 DALLLIDETLKLL*MAS*LCPPVSLGAEPW 63



 Score = 41.8 bits (85), Expect(2) = 9e-05
 Identities = 21/39 (53%), Positives = 25/39 (64%)
 Frame = -3 / -2

                                                  
Query: 245 LAIGPFLIHSPRVRLRRMPAE*GGTSC*LHSSEPR*PDA 129
           LA+ PFLIH P+V L+    +* G SC*  SSEP  P A
Sbjct: 272 LAVEPFLIHQPQVWLQWR*GK*EGPSC*CRSSEPTWPVA 156



 Score = 24.0 bits (46), Expect(2) = 9e-05
 Identities = 11/15 (73%), Positives = 12/15 (80%)
 Frame = -2 / -1

                          
Query: 90  GLLIVSISLPGG*AV 46
           GLLIVS S P G*A+
Sbjct: 108 GLLIVSTSFPWG*AM 64



 Score = 36.3 bits (73), Expect(2) = 8e-04
 Identities = 18/34 (52%), Positives = 20/34 (58%)
 Frame = +2 / +2

                                             
Query: 143 LAQRNGVNRRCLLTLLXXXXXXXXXXXXRKALLQ 244
           LAQRNG++RR LLT L            RKALLQ
Sbjct: 170 LAQRNGISRRGLLTFLTSTAAIPEAGESRKALLQ 271



 Score = 26.3 bits (51), Expect(2) = 8e-04
 Identities = 10/13 (76%), Positives = 10/13 (76%)
 Frame = +1 / +1

                        
Query: 46  HGSASR*TDGHNQ 84
           HGSA R T GHNQ
Sbjct: 64  HGSAPRETGGHNQ 102



to top

>LOC_Os02g06830:12002.t00580:unspliced-genomic expressed protein|
          Length = 9495

 Score = 29.9 bits (59), Expect(2) = 0.25
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +2 / +2

                                        
Query: 614  HKSLLDLTVCFIFCKIRRKKIMVWTSLY 697
            H   LDLT+CF+   +RR  ++++  L+
Sbjct: 4559 HSIYLDLTICFMSFTVRRYMVLLFLYLF 4642



 Score = 29.9 bits (59), Expect(2) = 0.25
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = +2 / +3

                              
Query: 752  SLTLYILFFNQNVPLEIC 805
            SL L+ LFF+QN P +IC
Sbjct: 7680 SLNLFALFFSQNSPNDIC 7733



to top

>LOC_Os02g01730:12002.t00073:unspliced-genomic senescence-induced receptor-like serine/threonine-protein kinase|
           precursor, putative, expressed
          Length = 2428

 Score = 34.5 bits (69), Expect = 0.97
 Identities = 15/31 (48%), Positives = 17/31 (54%)
 Frame = -3 / +3

                                          
Query: 137 PDALPLNDEEMKLLRPAF*LCPSVYLEAEPW 45
           P   P   +E+ LLRPA  L PS   E EPW
Sbjct: 240 PPCSPPPQQELPLLRPAAKLVPSTKEEGEPW 332



to top

>LOC_Os05g30870:12005.t02686:unspliced-genomic serine/threonine-protein kinase NAK, putative, expressed|
          Length = 7479

 Score = 25.8 bits (50), Expect(2) = 1.3
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -2 / +2

                                
Query: 468  VSAIGLAPHMFNPSYLFLSS 409
            +S++ L+PH+  P Y FL S
Sbjct: 1985 LSSLPLSPHLLFPFYFFLPS 2044



 Score = 25.4 bits (49), Expect(2) = 1.3
 Identities = 11/24 (45%), Positives = 11/24 (45%)
 Frame = -3 / +2

                                    
Query: 323  CNSFCKRRPASPCHSFLYFPLISS 252
            C   C   P  PC SF  FPL  S
Sbjct: 2051 CLRGCYPIPPWPCSSFFSFPLFLS 2122



to top

>LOC_Os03g61290:12003.t05362:unspliced-genomic ATCHX19, putative, expressed|
          Length = 4985

 Score = 33.1 bits (66), Expect = 2.5
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = +1 / -1

                                                     
Query: 298  GRRLQKELQGLFWIHGRAGQREASRAAHGVGERNSRVAGQE 420
            GRR  ++L  +  +HG      A+R  H V +R    AG E
Sbjct: 3788 GRRALRQLDEVHGVHGELAPPRAARRLHEVDQRRDAAAGVE 3666



to top

>LOC_Os01g67650:12001.t06122:unspliced-genomic DELLA protein DWARF8, putative|
          Length = 1599

 Score = 25.8 bits (50), Expect(2) = 4.7
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +1 / +1

                                         
Query: 307 LQKELQGLFWIHGRAGQREASRAAHGVGER 396
           L +ELQ    +HG A QR AS    G+ +R
Sbjct: 535 LLRELQAGAPVHGTAFQRVASCFVQGLADR 624



 Score = 23.5 bits (45), Expect(2) = 4.7
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +3 / +2

                         
Query: 159 ELTGGASSLCWHPS 200
           ELTG  S  CW P+
Sbjct: 452 ELTGCVSCSCWSPA 493



to top

>LOC_Os06g06910:12006.t00576:unspliced-genomic expressed protein|
          Length = 1320

 Score = 32.2 bits (64), Expect = 4.7
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +3 / -1

                                                 
Query: 168 GGASSLCWHPSQPYPRRVNQERPYCKIM*RDQRKIKKR 281
           GGA   C HP +   RRV Q R   +   R++R+ ++R
Sbjct: 405 GGARRRCGHPEERRERRVGQPRGEAREREREERRGRER 292



to top

>LOC_Os03g48040:12003.t05706:unspliced-genomic ferredoxin-6, chloroplast precursor, putative, expressed|
          Length = 3046

 Score = 32.2 bits (64), Expect = 4.8
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +1 / -3

                                         
Query: 532  HIAPHLPLKPESVTCSVSSF*YLICEVAQ 618
            H   H P K  + TC++S F +L+C++ +
Sbjct: 2153 HTTMHSPEKGSNKTCNISPFQFLLCQIEE 2067



to top

>LOC_Os06g27830:12006.t02488:unspliced-genomic WRKY transcription factor 19, putative, expressed|
          Length = 4639

 Score = 31.8 bits (63), Expect = 6.5
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -3 / -1

                                  
Query: 758 *EKSSLDHCQVTVQNNSTNLCIM 690
           *  ++L+H  +TV+ N TNLC M
Sbjct: 595 *SSTNLEHMYITVETNETNLCCM 527



to top

>LOC_Os03g19730:12003.t05688:unspliced-genomic expressed protein|
          Length = 1074

 Score = 31.8 bits (63), Expect = 6.5
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -3 / +2

                             
Query: 302 RPASPCHSFLYFPLISSH 249
           +P +P HS  YFP++S H
Sbjct: 83  KPTTPTHSLCYFPILSDH 136



to top

>LOC_Os03g50290:12003.t04371:unspliced-genomic 14-3-3-like protein S94, putative, expressed|
          Length = 4204

 Score = 30.4 bits (60), Expect(2) = 7.5
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +1 / -3

                                              
Query: 343 GRAGQREASRAAHGVGERNSRVAGQE*VARVEHVR 447
           GRAG+R   R + G G+R  R  G++   R   VR
Sbjct: 350 GRAGKRGEERRSGGSGDRREREGGRKEKIRKRRVR 246



 Score = 23.1 bits (44), Expect(2) = 7.5
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +3 / -2

                               
Query: 174 ASSLCWHPSQPYPRRVNQER 233
           AS L  +P+QPYP  ++  R
Sbjct: 762 ASDLTSNPTQPYPPTLDLTR 703



to top

>LOC_Os09g27780:12009.t02456:unspliced-genomic retrotransposon protein, putative, unclassified|
          Length = 2931

 Score = 31.3 bits (62), Expect = 8.9
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -3 / +2

                                           
Query: 503 FTVEGIFLQKKLFQLLGWRLTCSTLATYSCPA 408
           FT   +F+  KLF+ LG  L CS   ++S P+
Sbjct: 281 FTSPTLFMYAKLFRALGLILLCSAAFSFSSPS 376



to top

>LOC_Os06g17280:12006.t01600:unspliced-genomic PHD-finger family protein, expressed|
          Length = 3488

 Score = 31.3 bits (62), Expect = 8.9
 Identities = 14/52 (26%), Positives = 25/52 (48%)
 Frame = +3 / -1

                                                                
Query: 663  EGKKSWCGHHYTQICTIILYSNLTMVKRTXXXXXXXXXXXRMYH*KFVEKKK 818
            E KK  C  +   +  + +Y+NL MV+             RM+H K ++++K
Sbjct: 3410 ERKKLLCNDNLNTV*NVHVYTNLNMVQNVQHVYTVYTICCRMFHLK*LQERK 3255



to top

>LOC_Os02g57310:12002.t05303:unspliced-genomic resistance protein, putative, expressed|
          Length = 5133

 Score = 31.3 bits (62), Expect = 8.9
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +3 / +1

                                          
Query: 120  QRQSIWSPWLRGMELTGGASSLCWHPSQPY 209
            Q ++ WS WLR + +  G     W+P +P+
Sbjct: 2962 QIRAEWSAWLRKICICRGGGLAAWYPKRPH 3051



to top

>LOC_Os02g07730:12002.t00669:unspliced-genomic catalytic/ hydrolase/ phosphoglycolate phosphatase, putative,|
           expressed
          Length = 2644

 Score = 31.3 bits (62), Expect = 8.9
 Identities = 14/28 (50%), Positives = 16/28 (57%)
 Frame = -3 / +2

                                       
Query: 296 ASPCHSFLYFPLISSHNLAIGPFLIHSP 213
           A P   FL+F L SS N   GP L +SP
Sbjct: 830 AEPIFDFLFF*LFSSENSWSGPILHYSP 913



to top

>LOC_Os11g02159:12011.t004388:unspliced-genomic expressed protein|
          Length = 5449

 Score = 31.3 bits (62), Expect = 9.0
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +2 / +3

                                            
Query: 617 KSLLDLTVCFIFCKIRRKKIMVWTSLYTNLYYY 715
           KS + +     FC +RRKK   W+ L+  LY Y
Sbjct: 843 KSTMLIIEFVFFCLLRRKKKQFWSVLWELLYIY 941



to top

>LOC_Os07g26540:12007.t02351:unspliced-genomic hexokinase-1, putative, expressed|
          Length = 1584

 Score = 31.3 bits (62), Expect = 9.0
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +1 / +2

                                                   
Query: 289  GEAGRRLQKELQGLFWIHGRAGQREASRAAHGVGERNSR 405
            G  GRR  + L+ +  +HG  G+  A R   G G R +R
Sbjct: 1379 GRRGRRAVRALRQVPAVHGERGEGAARRGGGGEGGRQAR 1495



to top

>LOC_Os03g63420:12003.t05559:unspliced-genomic OsGrx_S14 - glutaredoxin subgroup II, expressed|
          Length = 2212

 Score = 31.3 bits (62), Expect = 9.0
 Identities = 17/56 (30%), Positives = 26/56 (46%)
 Frame = +1 / -2

                                                                   
Query: 289 GEAGRRLQKELQGLFWIHGRAGQREASRAAHGVGERNSRVAGQE*VARVEHVRRQP 456
           GE   RL+  +Q   ++H R G+         + E++  V     V R  H+RRQP
Sbjct: 423 GEHVERLEGHVQRPEYLHHRVGESALREVLGPLHEQHHLVRPHHLVQRRPHLRRQP 256


  Database: tigr.seq.out
    Posted date:  Jul 20, 2007  8:58 AM
  Number of letters in database: 166,841,660
  Number of sequences in database:  56,278
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Sequences: 56278
Number of Hits to DB: 296,488,153
Number of extensions: 4477269
Number of successful extensions: 16955
Number of sequences better than 10.0: 18
Length of query: 275
Length of database: 55,613,886
Length adjustment: 49
Effective length of query: 226
Effective length of database: 52,856,264
Effective search space: 11945515664
Effective search space used: 11945515664
Neighboring words threshold: 13
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
to top