ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf19l03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1LOC_Os01g57030:12001.t05112:unspliced-genomic expressed protein 44 8e-04
2LOC_Os05g42360:12005.t03772:unspliced-genomic hypothetical p... 36 0.17
3LOC_Os06g14760:12006.t01351:unspliced-genomic retrotransposo... 35 0.45
4LOC_Os04g25960:12004.t02303:unspliced-genomic conserved hypo... 32 2.2
5LOC_Os01g42480:12001.t03765:unspliced-genomic yip1 domain fa... 32 2.2
6LOC_Os02g48310:12002.t04415:unspliced-genomic transposon pro... 32 2.2
7LOC_Os08g13650:12008.t01241:unspliced-genomic hypothetical p... 32 3.0
8LOC_Os02g50100:12002.t04594:unspliced-genomic SET domain con... 27 3.9
9LOC_Os10g26140:12010.t02028:unspliced-genomic colon cancer-a... 31 5.7
10LOC_Os03g60130:12003.t05256:unspliced-genomic transcription ... 30 7.9
11LOC_Os10g08014:12010.t00623:unspliced-genomic ABC transporte... 27 8.2
12LOC_Os04g41990:12004.t03754:unspliced-genomic autophagy-rela... 27 9.5

>LOC_Os01g57030:12001.t05112:unspliced-genomic expressed protein|
          Length = 536
 Score = 43.7 bits (89), Expect = 8e-04
 Identities = 19/34 (55%), Positives = 21/34 (61%)
 Frame = -1 / -1

                                             
Query: 201 SWSVSRGGHADQRRCHDXXXXXXGEDPELQSRRH 100
           S  + RGGHADQ R HD      GEDPEL+  RH
Sbjct: 203 SRGLGRGGHADQGRRHDGGGGSRGEDPELEGGRH 102



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>LOC_Os05g42360:12005.t03772:unspliced-genomic hypothetical protein|
          Length = 1657

 Score = 35.9 bits (72), Expect = 0.17
 Identities = 18/33 (54%), Positives = 19/33 (57%)
 Frame = -1 / +1

                                             
Query: 192  VSRGGHADQRRCHDXXXXXXGEDPELQSRRHLL 94
            V  G  ADQRR  D      GE+PELQ  RHLL
Sbjct: 1507 VGGGRRADQRRRQDGRGRCHGEEPELQCCRHLL 1605



 Score = 33.6 bits (67), Expect = 0.85
 Identities = 17/34 (50%), Positives = 20/34 (58%)
 Frame = -2 / +2

                                              
Query: 191  SAAEAMPTSDDXXXXXXXXXARILSFRVGAICLI 90
            SAA+A+PTSD          AR LSF V AIC +
Sbjct: 1508 SAADAVPTSDVARTAAAAATARSLSFSVAAICFL 1609



 Score = 30.9 bits (61), Expect = 5.7
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -1 / -2

                                       
Query: 183 GGHADQRRCHDXXXXXXGEDPELQSRRH 100
           GG+ D  R HD      GE+PE + RRH
Sbjct: 84  GGYPDHGRRHDGGGRRRGEEPEPERRRH 1



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>LOC_Os06g14760:12006.t01351:unspliced-genomic retrotransposon protein, putative, unclassified|
          Length = 3285

 Score = 34.5 bits (69), Expect = 0.45
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +3 / -2

                                 
Query: 306  CLMCNYLRSIFASTCIHYCKF 368
            CL C YLR I+A  CI  C+F
Sbjct: 1241 CLFCKYLRFIYAWVCI*ICRF 1179



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>LOC_Os04g25960:12004.t02303:unspliced-genomic conserved hypothetical protein|
          Length = 8465

 Score = 32.2 bits (64), Expect = 2.2
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +3 / +2

                                          
Query: 312  MCNYLRSIFASTCIHYCKFFLYL*QKFSWA 401
            +C Y+   F+S C+H C   +Y   KFS A
Sbjct: 1640 ICVYIADAFSSKCVHACFCLVYALLKFSGA 1729



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>LOC_Os01g42480:12001.t03765:unspliced-genomic yip1 domain family, member 1, putative, expressed|
          Length = 3119

 Score = 32.2 bits (64), Expect = 2.2
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = -3 / +3

                                  
Query: 445  FFLQKMAFIYKKNVCAQLNFC* 380
            FF+ K+ FIY   +CA L+FC*
Sbjct: 1302 FFISKLCFIYFVLLCAPLSFC* 1367



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>LOC_Os02g48310:12002.t04415:unspliced-genomic transposon protein, putative, unclassified|
          Length = 2819

 Score = 32.2 bits (64), Expect = 2.2
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -1 / +2

                                     
Query: 435  RKWLLYIRKMYVPN*TFARDKGKIY 361
            R +LLY  K+Y+PN*   +D G+ +
Sbjct: 2291 RHYLLYPYKIYIPN*KICKDSGRFF 2365



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>LOC_Os08g13650:12008.t01241:unspliced-genomic hypothetical protein|
          Length = 3561

 Score = 31.8 bits (63), Expect = 3.0
 Identities = 13/26 (50%), Positives = 19/26 (73%)
 Frame = +1 / -2

                                      
Query: 328  DLSLLLLVFIIVNFSFISSKSLVGHI 405
            +L L+L  FII+ FS+ +SKS + HI
Sbjct: 1436 NLKLILRFFIIIYFSYFTSKSQIIHI 1359



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>LOC_Os02g50100:12002.t04594:unspliced-genomic SET domain containing protein, expressed|
          Length = 2663

 Score = 26.7 bits (52), Expect(2) = 3.9
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -2 / +3

                                     
Query: 428 GFYI*EKCMCPTKLLLEIKEKFTIMN 351
           GFY  EKC CP  L+   +  F ++N
Sbjct: 765 GFYNFEKCGCPEHLMSNGECCFLVLN 842



 Score = 24.9 bits (48), Expect(2) = 3.9
 Identities = 7/23 (30%), Positives = 14/23 (60%)
 Frame = -2 / +3

                                   
Query: 104  AICLILEGCCCS*QRLITLVLEE 36
            ++C++   CCC     +T+VL +
Sbjct: 1452 SVCMVKSQCCCLLLICVTIVLTQ 1520



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>LOC_Os10g26140:12010.t02028:unspliced-genomic colon cancer-associated protein Mic1-like containing protein,|
            expressed
          Length = 8816

 Score = 30.9 bits (61), Expect = 5.7
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = -1 / +2

                             
Query: 456  VFFFFFCRKWLLYIRKM 406
            VFFFFFCR + L+I+ +
Sbjct: 8723 VFFFFFCRVFFLFIKTL 8773



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>LOC_Os03g60130:12003.t05256:unspliced-genomic transcription elongation factor A protein 2, putative, expressed|
          Length = 3111

 Score = 30.4 bits (60), Expect = 7.9
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -1 / +1

                                
Query: 453  FFFFFCRKWLLYIRKMYVPN 394
            FFF+FC   L+++RKM  P+
Sbjct: 1537 FFFYFCAVLLIFLRKMDSPD 1596



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>LOC_Os10g08014:12010.t00623:unspliced-genomic ABC transporter, putative, expressed|
          Length = 6263

 Score = 26.7 bits (52), Expect(2) = 8.2
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +3 / -3

                               
Query: 306  CLMCNYLRSIFASTCIHYC 362
            CL  ++ RS+F STC+  C
Sbjct: 3912 CLCPSFERSVFLSTCVCSC 3856



 Score = 24.9 bits (48), Expect(2) = 8.2
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +3 / -3

                         
Query: 351 IHYCKFFLYL*QKF 392
           IH C FFL++* KF
Sbjct: 588 IHICPFFLHM*IKF 547



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>LOC_Os04g41990:12004.t03754:unspliced-genomic autophagy-related protein 10, putative, expressed|
          Length = 1887

 Score = 27.2 bits (53), Expect(2) = 9.5
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -1 / +3

                           
Query: 450 FFFFCRKWLLYIRKMY 403
           FFFFCRK  +++ K Y
Sbjct: 501 FFFFCRKRAIWLLKEY 548



 Score = 22.6 bits (43), Expect(2) = 9.5
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = -3 / +3

                      
Query: 67   SKD*LLWCWK 38
            S D*LL+CWK
Sbjct: 1371 SFD*LLYCWK 1400


  Database: tigr.seq.out
    Posted date:  Jul 20, 2007  8:58 AM
  Number of letters in database: 166,841,660
  Number of sequences in database:  56,278
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Sequences: 56278
Number of Hits to DB: 126,203,041
Number of extensions: 1738712
Number of successful extensions: 6976
Number of sequences better than 10.0: 12
Length of query: 152
Length of database: 55,613,886
Length adjustment: 47
Effective length of query: 105
Effective length of database: 52,968,820
Effective search space: 5561726100
Effective search space used: 5561726100
Neighboring words threshold: 13
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
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