| Clone Name | FLbaf19l03 |
|---|---|
| Clone Library Name | barley_pub |
>LOC_Os01g57030:12001.t05112:unspliced-genomic expressed protein| Length = 536 Score = 43.7 bits (89), Expect = 8e-04 Identities = 19/34 (55%), Positives = 21/34 (61%) Frame = -1 / -1 Query: 201 SWSVSRGGHADQRRCHDXXXXXXGEDPELQSRRH 100 S + RGGHADQ R HD GEDPEL+ RH Sbjct: 203 SRGLGRGGHADQGRRHDGGGGSRGEDPELEGGRH 102
>LOC_Os05g42360:12005.t03772:unspliced-genomic hypothetical protein| Length = 1657 Score = 35.9 bits (72), Expect = 0.17 Identities = 18/33 (54%), Positives = 19/33 (57%) Frame = -1 / +1 Query: 192 VSRGGHADQRRCHDXXXXXXGEDPELQSRRHLL 94 V G ADQRR D GE+PELQ RHLL Sbjct: 1507 VGGGRRADQRRRQDGRGRCHGEEPELQCCRHLL 1605 Score = 33.6 bits (67), Expect = 0.85 Identities = 17/34 (50%), Positives = 20/34 (58%) Frame = -2 / +2 Query: 191 SAAEAMPTSDDXXXXXXXXXARILSFRVGAICLI 90 SAA+A+PTSD AR LSF V AIC + Sbjct: 1508 SAADAVPTSDVARTAAAAATARSLSFSVAAICFL 1609 Score = 30.9 bits (61), Expect = 5.7 Identities = 13/28 (46%), Positives = 16/28 (57%) Frame = -1 / -2 Query: 183 GGHADQRRCHDXXXXXXGEDPELQSRRH 100 GG+ D R HD GE+PE + RRH Sbjct: 84 GGYPDHGRRHDGGGRRRGEEPEPERRRH 1
>LOC_Os06g14760:12006.t01351:unspliced-genomic retrotransposon protein, putative, unclassified| Length = 3285 Score = 34.5 bits (69), Expect = 0.45 Identities = 12/21 (57%), Positives = 14/21 (66%) Frame = +3 / -2 Query: 306 CLMCNYLRSIFASTCIHYCKF 368 CL C YLR I+A CI C+F Sbjct: 1241 CLFCKYLRFIYAWVCI*ICRF 1179
>LOC_Os04g25960:12004.t02303:unspliced-genomic conserved hypothetical protein| Length = 8465 Score = 32.2 bits (64), Expect = 2.2 Identities = 12/30 (40%), Positives = 17/30 (56%) Frame = +3 / +2 Query: 312 MCNYLRSIFASTCIHYCKFFLYL*QKFSWA 401 +C Y+ F+S C+H C +Y KFS A Sbjct: 1640 ICVYIADAFSSKCVHACFCLVYALLKFSGA 1729
>LOC_Os01g42480:12001.t03765:unspliced-genomic yip1 domain family, member 1, putative, expressed| Length = 3119 Score = 32.2 bits (64), Expect = 2.2 Identities = 12/22 (54%), Positives = 16/22 (72%) Frame = -3 / +3 Query: 445 FFLQKMAFIYKKNVCAQLNFC* 380 FF+ K+ FIY +CA L+FC* Sbjct: 1302 FFISKLCFIYFVLLCAPLSFC* 1367
>LOC_Os02g48310:12002.t04415:unspliced-genomic transposon protein, putative, unclassified| Length = 2819 Score = 32.2 bits (64), Expect = 2.2 Identities = 11/25 (44%), Positives = 17/25 (68%) Frame = -1 / +2 Query: 435 RKWLLYIRKMYVPN*TFARDKGKIY 361 R +LLY K+Y+PN* +D G+ + Sbjct: 2291 RHYLLYPYKIYIPN*KICKDSGRFF 2365
>LOC_Os08g13650:12008.t01241:unspliced-genomic hypothetical protein| Length = 3561 Score = 31.8 bits (63), Expect = 3.0 Identities = 13/26 (50%), Positives = 19/26 (73%) Frame = +1 / -2 Query: 328 DLSLLLLVFIIVNFSFISSKSLVGHI 405 +L L+L FII+ FS+ +SKS + HI Sbjct: 1436 NLKLILRFFIIIYFSYFTSKSQIIHI 1359
>LOC_Os02g50100:12002.t04594:unspliced-genomic SET domain containing protein, expressed| Length = 2663 Score = 26.7 bits (52), Expect(2) = 3.9 Identities = 11/26 (42%), Positives = 15/26 (57%) Frame = -2 / +3 Query: 428 GFYI*EKCMCPTKLLLEIKEKFTIMN 351 GFY EKC CP L+ + F ++N Sbjct: 765 GFYNFEKCGCPEHLMSNGECCFLVLN 842 Score = 24.9 bits (48), Expect(2) = 3.9 Identities = 7/23 (30%), Positives = 14/23 (60%) Frame = -2 / +3 Query: 104 AICLILEGCCCS*QRLITLVLEE 36 ++C++ CCC +T+VL + Sbjct: 1452 SVCMVKSQCCCLLLICVTIVLTQ 1520
>LOC_Os10g26140:12010.t02028:unspliced-genomic colon cancer-associated protein Mic1-like containing protein,| expressed Length = 8816 Score = 30.9 bits (61), Expect = 5.7 Identities = 10/17 (58%), Positives = 14/17 (82%) Frame = -1 / +2 Query: 456 VFFFFFCRKWLLYIRKM 406 VFFFFFCR + L+I+ + Sbjct: 8723 VFFFFFCRVFFLFIKTL 8773
>LOC_Os03g60130:12003.t05256:unspliced-genomic transcription elongation factor A protein 2, putative, expressed| Length = 3111 Score = 30.4 bits (60), Expect = 7.9 Identities = 10/20 (50%), Positives = 15/20 (75%) Frame = -1 / +1 Query: 453 FFFFFCRKWLLYIRKMYVPN 394 FFF+FC L+++RKM P+ Sbjct: 1537 FFFYFCAVLLIFLRKMDSPD 1596
>LOC_Os10g08014:12010.t00623:unspliced-genomic ABC transporter, putative, expressed| Length = 6263 Score = 26.7 bits (52), Expect(2) = 8.2 Identities = 9/19 (47%), Positives = 13/19 (68%) Frame = +3 / -3 Query: 306 CLMCNYLRSIFASTCIHYC 362 CL ++ RS+F STC+ C Sbjct: 3912 CLCPSFERSVFLSTCVCSC 3856 Score = 24.9 bits (48), Expect(2) = 8.2 Identities = 9/14 (64%), Positives = 11/14 (78%) Frame = +3 / -3 Query: 351 IHYCKFFLYL*QKF 392 IH C FFL++* KF Sbjct: 588 IHICPFFLHM*IKF 547
>LOC_Os04g41990:12004.t03754:unspliced-genomic autophagy-related protein 10, putative, expressed| Length = 1887 Score = 27.2 bits (53), Expect(2) = 9.5 Identities = 9/16 (56%), Positives = 12/16 (75%) Frame = -1 / +3 Query: 450 FFFFCRKWLLYIRKMY 403 FFFFCRK +++ K Y Sbjct: 501 FFFFCRKRAIWLLKEY 548 Score = 22.6 bits (43), Expect(2) = 9.5 Identities = 8/10 (80%), Positives = 9/10 (90%) Frame = -3 / +3 Query: 67 SKD*LLWCWK 38 S D*LL+CWK Sbjct: 1371 SFD*LLYCWK 1400 Database: tigr.seq.out Posted date: Jul 20, 2007 8:58 AM Number of letters in database: 166,841,660 Number of sequences in database: 56,278 Lambda K H 0.318 0.134 0.401 Matrix: BLOSUM62 Number of Sequences: 56278 Number of Hits to DB: 126,203,041 Number of extensions: 1738712 Number of successful extensions: 6976 Number of sequences better than 10.0: 12 Length of query: 152 Length of database: 55,613,886 Length adjustment: 47 Effective length of query: 105 Effective length of database: 52,968,820 Effective search space: 5561726100 Effective search space used: 5561726100 Neighboring words threshold: 13 Window for multiple hits: 40 X1: 16 ( 7.3 bits)