| Clone Name | FLbaf19l03 |
|---|---|
| Clone Library Name | barley_pub |
>gb|BT009535.1| Triticum aestivum clone wr1.pk0136.c2:fis, full insert mRNA sequence Length = 940 Score = 137 bits (69), Expect = 4e-29 Identities = 102/113 (90%) Strand = Plus / Plus Query: 180 ctccgcggctgacggaccagctcccgcaccggtctccggcgcgtcggtggccgccccggc 239 ||||||||| |||||||||||||| || || | |||||| ||||||| |||||||||||| Sbjct: 148 ctccgcggccgacggaccagctcctgcgccagcctccggtgcgtcggcggccgccccggc 207 Query: 240 tgtggccatggcgtccttgaccgcgctcgtcttcggctacttcttctgaggct 292 ||| |||||||||||||||||||| |||||||| ||||||||||| ||||||| Sbjct: 208 tgtcgccatggcgtccttgaccgcactcgtctttggctacttcttatgaggct 260 Score = 93.7 bits (47), Expect = 5e-16 Identities = 62/67 (92%) Strand = Plus / Plus Query: 71 tgcagcagcaaccttccaggatcaagcaaatggcgccgactctgaagctcaggatcctcg 130 |||||||||| ||||| |||| ||| || ||||||||||||||||||||||||||||||| Sbjct: 51 tgcagcagcatccttctaggagcaaccagatggcgccgactctgaagctcaggatcctcg 110 Query: 131 ccgtggc 137 ||||||| Sbjct: 111 ccgtggc 117
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1 Length = 43261740 Score = 81.8 bits (41), Expect = 2e-12 Identities = 77/89 (86%) Strand = Plus / Plus Query: 98 aaatggcgccgactctgaagctcaggatcctcgccgtggccgccaccgccaccgtcgtgg 157 |||||||| | || || ||||||||||||||||||| ||| ||||||||| ||||||||| Sbjct: 32938374 aaatggcggccaccctcaagctcaggatcctcgccgcggctgccaccgccgccgtcgtgg 32938433 Query: 158 catcgtcgctggtcggcatggcctccgcg 186 | ||||| |||||||| ||||| ||||| Sbjct: 32938434 cgtcgtccttggtcggcgtggccaccgcg 32938462 Score = 54.0 bits (27), Expect = 4e-04 Identities = 36/39 (92%) Strand = Plus / Minus Query: 150 cgtcgtggcatcgtcgctggtcggcatggcctccgcggc 188 |||||| || |||||||||||||||| |||||||||||| Sbjct: 32940055 cgtcgtcgcctcgtcgctggtcggcacggcctccgcggc 32940017
>dbj|AP003224.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0010B10 Length = 155263 Score = 81.8 bits (41), Expect = 2e-12 Identities = 77/89 (86%) Strand = Plus / Plus Query: 98 aaatggcgccgactctgaagctcaggatcctcgccgtggccgccaccgccaccgtcgtgg 157 |||||||| | || || ||||||||||||||||||| ||| ||||||||| ||||||||| Sbjct: 4602 aaatggcggccaccctcaagctcaggatcctcgccgcggctgccaccgccgccgtcgtgg 4661 Query: 158 catcgtcgctggtcggcatggcctccgcg 186 | ||||| |||||||| ||||| ||||| Sbjct: 4662 cgtcgtccttggtcggcgtggccaccgcg 4690 Score = 54.0 bits (27), Expect = 4e-04 Identities = 36/39 (92%) Strand = Plus / Minus Query: 150 cgtcgtggcatcgtcgctggtcggcatggcctccgcggc 188 |||||| || |||||||||||||||| |||||||||||| Sbjct: 6283 cgtcgtcgcctcgtcgctggtcggcacggcctccgcggc 6245
>ref|NM_001050962.1| Oryza sativa (japonica cultivar-group) Os01g0778300 (Os01g0778300) mRNA, complete cds Length = 207 Score = 79.8 bits (40), Expect = 8e-12 Identities = 64/72 (88%) Strand = Plus / Plus Query: 115 aagctcaggatcctcgccgtggccgccaccgccaccgtcgtggcatcgtcgctggtcggc 174 ||||||||||||||||||| ||| ||||||||| |||||||||| ||||| |||||||| Sbjct: 16 aagctcaggatcctcgccgcggctgccaccgccgccgtcgtggcgtcgtccttggtcggc 75 Query: 175 atggcctccgcg 186 ||||| ||||| Sbjct: 76 gtggccaccgcg 87
>emb|CT836371.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA019O08, full insert sequence Length = 443 Score = 71.9 bits (36), Expect = 2e-09 Identities = 78/92 (84%) Strand = Plus / Plus Query: 94 aagcaaatggcgccgactctgaagctcaggatcctcgccgtggccgccaccgccaccgtc 153 |||||||||||| | || |||||||||||| ||||||||||||| || |||| ||||| Sbjct: 86 aagcaaatggcggcaacactgaagctcaggctcctcgccgtggcagcggccgcggccgtc 145 Query: 154 gtggcatcgtcgctggtcggcatggcctccgc 185 |||| ||||||||||||||| ||| ||||| Sbjct: 146 ctggcgacgtcgctggtcggcacggcgtccgc 177
>gb|AC130597.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0017K09, complete sequence Length = 155525 Score = 71.9 bits (36), Expect = 2e-09 Identities = 78/92 (84%) Strand = Plus / Plus Query: 94 aagcaaatggcgccgactctgaagctcaggatcctcgccgtggccgccaccgccaccgtc 153 |||||||||||| | || |||||||||||| ||||||||||||| || |||| ||||| Sbjct: 152694 aagcaaatggcggcaacactgaagctcaggctcctcgccgtggcagcggccgcggccgtc 152753 Query: 154 gtggcatcgtcgctggtcggcatggcctccgc 185 |||| ||||||||||||||| ||| ||||| Sbjct: 152754 ctggcgacgtcgctggtcggcacggcgtccgc 152785
>gb|AC135917.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0048K05, complete sequence Length = 104254 Score = 71.9 bits (36), Expect = 2e-09 Identities = 78/92 (84%) Strand = Plus / Plus Query: 94 aagcaaatggcgccgactctgaagctcaggatcctcgccgtggccgccaccgccaccgtc 153 |||||||||||| | || |||||||||||| ||||||||||||| || |||| ||||| Sbjct: 24855 aagcaaatggcggcaacactgaagctcaggctcctcgccgtggcagcggccgcggccgtc 24914 Query: 154 gtggcatcgtcgctggtcggcatggcctccgc 185 |||| ||||||||||||||| ||| ||||| Sbjct: 24915 ctggcgacgtcgctggtcggcacggcgtccgc 24946
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5 Length = 29737217 Score = 71.9 bits (36), Expect = 2e-09 Identities = 78/92 (84%) Strand = Plus / Plus Query: 94 aagcaaatggcgccgactctgaagctcaggatcctcgccgtggccgccaccgccaccgtc 153 |||||||||||| | || |||||||||||| ||||||||||||| || |||| ||||| Sbjct: 24638518 aagcaaatggcggcaacactgaagctcaggctcctcgccgtggcagcggccgcggccgtc 24638577 Query: 154 gtggcatcgtcgctggtcggcatggcctccgc 185 |||| ||||||||||||||| ||| ||||| Sbjct: 24638578 ctggcgacgtcgctggtcggcacggcgtccgc 24638609
>emb|CT831543.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA220I12, full insert sequence Length = 1154 Score = 46.1 bits (23), Expect = 0.11 Identities = 26/27 (96%) Strand = Plus / Plus Query: 126 cctcgccgtggccgccaccgccaccgt 152 ||||||||| ||||||||||||||||| Sbjct: 46 cctcgccgtcgccgccaccgccaccgt 72
>ref|NM_001063620.1| Oryza sativa (japonica cultivar-group) Os06g0203500 (Os06g0203500) mRNA, complete cds Length = 1595 Score = 46.1 bits (23), Expect = 0.11 Identities = 26/27 (96%) Strand = Plus / Plus Query: 126 cctcgccgtggccgccaccgccaccgt 152 ||||||||| ||||||||||||||||| Sbjct: 18 cctcgccgtcgccgccaccgccaccgt 44
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6 Length = 30731886 Score = 46.1 bits (23), Expect = 0.11 Identities = 26/27 (96%) Strand = Plus / Plus Query: 126 cctcgccgtggccgccaccgccaccgt 152 ||||||||| ||||||||||||||||| Sbjct: 5232329 cctcgccgtcgccgccaccgccaccgt 5232355
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Plus Query: 132 cgtggccgccaccgccaccgtcg 154 ||||||||||||||||||||||| Sbjct: 4876102 cgtggccgccaccgccaccgtcg 4876124
>dbj|AP004991.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0016O19 Length = 169120 Score = 46.1 bits (23), Expect = 0.11 Identities = 26/27 (96%) Strand = Plus / Plus Query: 126 cctcgccgtggccgccaccgccaccgt 152 ||||||||| ||||||||||||||||| Sbjct: 99051 cctcgccgtcgccgccaccgccaccgt 99077
>dbj|AK106691.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-114-C08, full insert sequence Length = 1595 Score = 46.1 bits (23), Expect = 0.11 Identities = 26/27 (96%) Strand = Plus / Plus Query: 126 cctcgccgtggccgccaccgccaccgt 152 ||||||||| ||||||||||||||||| Sbjct: 18 cctcgccgtcgccgccaccgccaccgt 44
>gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, complete sequence Length = 3131724 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Minus Query: 129 cgccgtggccgccaccgccaccg 151 ||||||||||||||||||||||| Sbjct: 2649440 cgccgtggccgccaccgccaccg 2649418
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2 Length = 35954743 Score = 44.1 bits (22), Expect = 0.42 Identities = 22/22 (100%) Strand = Plus / Minus Query: 409 ttttcttatatataaaagccat 430 |||||||||||||||||||||| Sbjct: 15571599 ttttcttatatataaaagccat 15571578
>emb|AL157786.13| Human DNA sequence from clone RP11-324O2 on chromosome 10 Contains a guanylate cyclase type protein pseudogene, the 5' end of the FACL5 for long-chain 5 fatty-acid-Coenzyme A ligase, a novel gene, the 3' end of a novel gene and a CpG island, complete sequence Length = 122591 Score = 44.1 bits (22), Expect = 0.42 Identities = 28/30 (93%) Strand = Plus / Minus Query: 70 ctgcagcagcaaccttccaggatcaagcaa 99 ||||||| ||||||||||||||||||||| Sbjct: 101333 ctgcagcctcaaccttccaggatcaagcaa 101304
>emb|AL161572.2|ATCHRIV68 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 68 Length = 199749 Score = 44.1 bits (22), Expect = 0.42 Identities = 22/22 (100%) Strand = Plus / Plus Query: 347 ttgtattcattattgtaaattt 368 |||||||||||||||||||||| Sbjct: 76312 ttgtattcattattgtaaattt 76333
>emb|AL035524.1|ATT13J8 Arabidopsis thaliana DNA chromosome 4, BAC clone T13J8 (ESSAII project) Length = 83693 Score = 44.1 bits (22), Expect = 0.42 Identities = 22/22 (100%) Strand = Plus / Plus Query: 347 ttgtattcattattgtaaattt 368 |||||||||||||||||||||| Sbjct: 71176 ttgtattcattattgtaaattt 71197
>dbj|AP005068.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0644G05 Length = 143119 Score = 44.1 bits (22), Expect = 0.42 Identities = 22/22 (100%) Strand = Plus / Minus Query: 409 ttttcttatatataaaagccat 430 |||||||||||||||||||||| Sbjct: 99159 ttttcttatatataaaagccat 99138
>dbj|AP004782.3| Homo sapiens genomic DNA, chromosome 11 clone:CMB9-103B16, complete sequence Length = 119191 Score = 44.1 bits (22), Expect = 0.42 Identities = 22/22 (100%) Strand = Plus / Minus Query: 315 tgcaattatttgagatctatct 336 |||||||||||||||||||||| Sbjct: 5661 tgcaattatttgagatctatct 5640
>dbj|AP005133.2| Homo sapiens genomic DNA, chromosome 11 clone:CMB9-54L20, complete sequences Length = 86000 Score = 44.1 bits (22), Expect = 0.42 Identities = 22/22 (100%) Strand = Plus / Minus Query: 315 tgcaattatttgagatctatct 336 |||||||||||||||||||||| Sbjct: 68229 tgcaattatttgagatctatct 68208
>gb|AC142471.3| Homo sapiens chromosome 8, clone WI2-82382C6, complete sequence Length = 42331 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Minus Query: 404 tacatttttcttatatataaaagccattt 432 |||||||||| ||| |||||||||||||| Sbjct: 18489 tacatttttcatatgtataaaagccattt 18461
>ref|NM_001067717.1| Oryza sativa (japonica cultivar-group) Os08g0193900 (Os08g0193900) mRNA, complete cds Length = 1517 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 127 ctcgccgtggccgccaccgccaccg 151 |||||||| |||||||||||||||| Sbjct: 61 ctcgccgtcgccgccaccgccaccg 85
>gb|AE014134.5| Drosophila melanogaster chromosome 2L, complete sequence Length = 23011544 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 404 tacatttttcttatatataaa 424 ||||||||||||||||||||| Sbjct: 15510866 tacatttttcttatatataaa 15510846
>ref|XM_001086214.1| PREDICTED: Macaca mulatta hypothetical protein LOC697664 (LOC697664), mRNA Length = 722 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 127 ctcgccgtggccgccaccgcc 147 ||||||||||||||||||||| Sbjct: 255 ctcgccgtggccgccaccgcc 235
>gb|AC092229.2| Drosophila melanogaster clone BACR23I04, complete sequence Length = 202042 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 404 tacatttttcttatatataaa 424 ||||||||||||||||||||| Sbjct: 176057 tacatttttcttatatataaa 176037
>ref|XM_539524.2| PREDICTED: Canis familiaris similar to Dedicator of cytokinesis protein 4 (LOC482407), mRNA Length = 5976 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 131 ccgtggccgccaccgccaccg 151 ||||||||||||||||||||| Sbjct: 5851 ccgtggccgccaccgccaccg 5831
>gb|AY310323.1| Streptomyces sp. FR-008 heptaene macrolide complex synthesis gene cluster, complete sequence Length = 138203 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 209 cggtctccggcgcgtcggtgg 229 ||||||||||||||||||||| Sbjct: 77997 cggtctccggcgcgtcggtgg 78017
>ref|XM_548376.2| PREDICTED: Canis familiaris similar to BTB (POZ) domain containing 14A (LOC491255), mRNA Length = 1761 Score = 42.1 bits (21), Expect = 1.7 Identities = 30/33 (90%) Strand = Plus / Minus Query: 129 cgccgtggccgccaccgccaccgtcgtggcatc 161 ||||||||| ||| |||||||||||||| |||| Sbjct: 630 cgccgtggcggccgccgccaccgtcgtgccatc 598
>gb|AC130319.5| Homo sapiens chromosome 8, clone RP13-116A4, complete sequence Length = 48347 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Plus Query: 404 tacatttttcttatatataaaagccattt 432 |||||||||| ||| |||||||||||||| Sbjct: 13043 tacatttttcatatgtataaaagccattt 13071
>gb|AC104995.4| Homo sapiens chromosome 8, clone RP11-1130I3, complete sequence Length = 159240 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Minus Query: 404 tacatttttcttatatataaaagccattt 432 |||||||||| ||| |||||||||||||| Sbjct: 150809 tacatttttcatatgtataaaagccattt 150781
>gb|AC103834.2| Homo sapiens chromosome 8, clone RP11-1081K18, complete sequence Length = 173817 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 79 caaccttccaggatcaagcaa 99 ||||||||||||||||||||| Sbjct: 150009 caaccttccaggatcaagcaa 149989
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8 Length = 28434780 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 127 ctcgccgtggccgccaccgccaccg 151 |||||||| |||||||||||||||| Sbjct: 5471410 ctcgccgtcgccgccaccgccaccg 5471386
>emb|AL356475.11| Human DNA sequence from clone RP11-332H17 on chromosome 1 Contains the 5' end of the KIFAP3 gene for kinesin-associated protein 3 and a novel gene, complete sequence Length = 108047 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 400 cacatacatttttcttatata 420 ||||||||||||||||||||| Sbjct: 93589 cacatacatttttcttatata 93609
>gb|AC093096.1| Drosophila melanogaster, chromosome 2L, region 35D-35E, BAC clone BACR24H10, complete sequence Length = 165190 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 404 tacatttttcttatatataaa 424 ||||||||||||||||||||| Sbjct: 40020 tacatttttcttatatataaa 40000
>gb|AC104052.9| Homo sapiens chromosome 8, clone CTD-2358M3, complete sequence Length = 90940 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 79 caaccttccaggatcaagcaa 99 ||||||||||||||||||||| Sbjct: 66734 caaccttccaggatcaagcaa 66754
>dbj|AP005441.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0056O06 Length = 151038 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 127 ctcgccgtggccgccaccgccaccg 151 |||||||| |||||||||||||||| Sbjct: 141221 ctcgccgtcgccgccaccgccaccg 141197
>gb|AC138372.3| Homo sapiens chromosome 8, clone CTD-2563N10, complete sequence Length = 36250 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Plus Query: 404 tacatttttcttatatataaaagccattt 432 |||||||||| ||| |||||||||||||| Sbjct: 34627 tacatttttcatatgtataaaagccattt 34655
>dbj|AK107386.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-127-C07, full insert sequence Length = 1517 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 127 ctcgccgtggccgccaccgccaccg 151 |||||||| |||||||||||||||| Sbjct: 61 ctcgccgtcgccgccaccgccaccg 85
>gb|AE015451.1| Pseudomonas putida KT2440 complete genome Length = 6181863 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 202 cccgcaccggtctccggcgcg 222 ||||||||||||||||||||| Sbjct: 5015775 cccgcaccggtctccggcgcg 5015795
>gb|CP000479.1| Mycobacterium avium 104, complete genome Length = 5475491 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 208 ccggtctccggcgcgtcggtggcc 231 ||||||||||||||| |||||||| Sbjct: 5448147 ccggtctccggcgcgccggtggcc 5448124
>dbj|AK243621.1| Oryza sativa (japonica cultivar-group) cDNA, clone: J100086B10, full insert sequence Length = 963 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 129 cgccgtggccgccaccgcca 148 |||||||||||||||||||| Sbjct: 353 cgccgtggccgccaccgcca 334
>ref|NM_001060113.1| Oryza sativa (japonica cultivar-group) Os04g0566100 (Os04g0566100) mRNA, complete cds Length = 1770 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 136 gccgccaccgccaccgtcgt 155 |||||||||||||||||||| Sbjct: 172 gccgccaccgccaccgtcgt 191
>emb|CT573213.2| Frankia alni str. ACN14A chromosome, complete sequence Length = 7497934 Score = 40.1 bits (20), Expect = 6.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 126 cctcgccgtggccgccaccgccaccgtc 153 ||||||||| |||||||||||| ||||| Sbjct: 982122 cctcgccgtagccgccaccgccgccgtc 982149
>gb|AC188038.1| Genomic sequence for Sorghum bicolor BAC clone SB_IBa82G24, complete sequence Length = 201654 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 137 ccgccaccgccaccgtcgtg 156 |||||||||||||||||||| Sbjct: 112286 ccgccaccgccaccgtcgtg 112305
>gb|AC183601.2| Pan troglodytes BAC clone CH251-348F17 from chromosome 7, complete sequence Length = 150757 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 362 taaatttttcctttatctct 381 |||||||||||||||||||| Sbjct: 138094 taaatttttcctttatctct 138075
>gb|CP000113.1| Myxococcus xanthus DK 1622, complete genome Length = 9139763 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 128 tcgccgtggccgccaccgcc 147 |||||||||||||||||||| Sbjct: 4169013 tcgccgtggccgccaccgcc 4168994
>ref|NM_130378.1| Arabidopsis thaliana unknown protein (AT2G48110) mRNA, complete cds Length = 3888 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 278 acttcttctgaggctatgga 297 |||||||||||||||||||| Sbjct: 2022 acttcttctgaggctatgga 2041
>gb|AY665392.1| Drosophila simulans CG7415 mRNA, partial cds Length = 2181 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 68 agctgcagcagcaaccttcc 87 |||||||||||||||||||| Sbjct: 112 agctgcagcagcaaccttcc 131
>gb|U88315.1| Caenorhabditis elegans cosmid C37H5, complete sequence Length = 43721 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 135 ggccgccaccgccaccgtcg 154 |||||||||||||||||||| Sbjct: 39467 ggccgccaccgccaccgtcg 39448
>gb|DQ011868.1| Homo sapiens sodium-dependent vitamin C transporter 2 (SLC23A2) gene, promoter region and exon 1b Length = 2101 Score = 40.1 bits (20), Expect = 6.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 69 gctgcagcagcaaccttccaggatcaag 96 ||||||||| |||||||||||| ||||| Sbjct: 649 gctgcagcatcaaccttccaggctcaag 622
>gb|AE014823.1| Plasmodium falciparum 3D7 chromosome 14 section 8 of 13 of the complete sequence Length = 249943 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 402 catacatttttcttatatataaaa 425 ||||||||||| |||||||||||| Sbjct: 120848 catacatttttattatatataaaa 120825
>gb|AC114295.2| Homo sapiens chromosome 5 clone RP11-115A1, complete sequence Length = 87978 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 40 tccagcaccagagtaattaa 59 |||||||||||||||||||| Sbjct: 51225 tccagcaccagagtaattaa 51206
>gb|AC156374.3| Loxodonta africana clone VMRC15-462M16, complete sequence Length = 88098 Score = 40.1 bits (20), Expect = 6.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 366 tttttcctttatctctagcaaaagttta 393 |||||| |||||||||||||||| |||| Sbjct: 25712 tttttcatttatctctagcaaaatttta 25685
>ref|NM_071901.2| Caenorhabditis elegans C37H5.13b (C37H5.13) mRNA, complete cds Length = 828 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 135 ggccgccaccgccaccgtcg 154 |||||||||||||||||||| Sbjct: 646 ggccgccaccgccaccgtcg 665
>ref|NM_071900.2| Caenorhabditis elegans C37H5.13a (C37H5.13) mRNA, complete cds Length = 1326 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 135 ggccgccaccgccaccgtcg 154 |||||||||||||||||||| Sbjct: 423 ggccgccaccgccaccgtcg 442
>gb|AC006072.4| Arabidopsis thaliana chromosome 2 clone T9J23 map CIC06C03, complete sequence Length = 81565 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 278 acttcttctgaggctatgga 297 |||||||||||||||||||| Sbjct: 80314 acttcttctgaggctatgga 80333
>emb|Z93386.1|CER11H6 Caenorhabditis elegans Cosmid R11H6, complete sequence Length = 19383 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 350 tattcattattgtaaatttt 369 |||||||||||||||||||| Sbjct: 4422 tattcattattgtaaatttt 4441
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4 Length = 35498469 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 136 gccgccaccgccaccgtcgt 155 |||||||||||||||||||| Sbjct: 28353112 gccgccaccgccaccgtcgt 28353131
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3 Length = 36192742 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 129 cgccgtggccgccaccgcca 148 |||||||||||||||||||| Sbjct: 23313789 cgccgtggccgccaccgcca 23313808
>emb|AL365271.10| Human DNA sequence from clone RP11-307P5 on chromosome 6 Contains the 3' part of a novel gene and a novel gene, complete sequence Length = 116079 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 406 catttttcttatatataaaa 425 |||||||||||||||||||| Sbjct: 73880 catttttcttatatataaaa 73899
>emb|AL358789.22| Human DNA sequence from clone RP11-507C22 on chromosome 1 Contains the 5' end of the MCOLN2 gene for mucolipin 2, the MCOLN3 gene for mucolipin 3, the gene for testis development protein NYD-SP29 (NYD-SP29) and two CpG islands, complete sequence Length = 165799 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 362 taaatttttcctttatctct 381 |||||||||||||||||||| Sbjct: 53849 taaatttttcctttatctct 53830
>emb|AL355512.22| Human DNA sequence from clone RP11-525A16 on chromosome 10 Contains the DUSP5 gene for dual specificity phosphatase 5 (HVH3), two novel genes, a high-mobility group box 3 (HMGB3) pseudogene and a CpG island, complete sequence Length = 199785 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 395 ttgggcacatacatttttct 414 |||||||||||||||||||| Sbjct: 184039 ttgggcacatacatttttct 184020
>emb|AL160036.12| Human DNA sequence from clone RP11-555C15 on chromosome 13 Contains part of the GPC6 gene for glypican 6, complete sequence Length = 173526 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 410 tttcttatatataaaagcca 429 |||||||||||||||||||| Sbjct: 71648 tttcttatatataaaagcca 71629
>emb|AL157396.9| Human DNA sequence from clone RP11-437J2 on chromosome 10 Contains the 3' end of the PDE6C gene for phosphodiesterase 6C, cGMP-specific, cone, alpha prime (PDEA2), the C10orf4 gene for chromosome 10 open reading frame 4 and the 5' end of the LGI1 gene for leucine-rich glioma inactivated 1, complete sequence Length = 128796 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 363 aaatttttcctttatctcta 382 |||||||||||||||||||| Sbjct: 66744 aaatttttcctttatctcta 66725
>emb|AL121890.34|HS1116H23 Human DNA sequence from clone RP5-1116H23 on chromosome 20 Contains the 5' end of the SLC23A2 gene for solute carrier family 23 (nucleobase transporters) member 2, the 3' end of the C20orf30 gene fpr HSPC274 protein, an RPS21 (ribosomal protein S21) pseudogene and two CpG islands, complete sequence Length = 120426 Score = 40.1 bits (20), Expect = 6.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 69 gctgcagcagcaaccttccaggatcaag 96 ||||||||| |||||||||||| ||||| Sbjct: 15492 gctgcagcatcaaccttccaggctcaag 15519
>gb|AC004659.1|AC004659 Homo sapiens chromosome 19, CIT-HSP-87m17 BAC clone, complete sequence Length = 129577 Score = 40.1 bits (20), Expect = 6.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 70 ctgcagcagcaaccttccaggatcaagc 97 |||||||| |||||||||||| |||||| Sbjct: 79933 ctgcagcatcaaccttccaggctcaagc 79906
>emb|AL662954.2|OSJN00155 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0005N02, complete sequence Length = 175163 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 136 gccgccaccgccaccgtcgt 155 |||||||||||||||||||| Sbjct: 1787 gccgccaccgccaccgtcgt 1806
>emb|AL050029.1|HSM800363 Homo sapiens genomic DNA; cDNA DKFZp566C0924 (from clone DKFZp566C0924) Length = 2597 Score = 40.1 bits (20), Expect = 6.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 70 ctgcagcagcaaccttccaggatcaagc 97 |||||||| |||||||||||| |||||| Sbjct: 610 ctgcagcatcaaccttccaggctcaagc 637
>gb|CP000084.1| Candidatus Pelagibacter ubique HTCC1062, complete genome Length = 1308759 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 36 ctcttccagcaccagagtaa 55 |||||||||||||||||||| Sbjct: 1004172 ctcttccagcaccagagtaa 1004191
>gb|AC012450.9| Homo sapiens BAC clone RP11-351J7 from 2, complete sequence Length = 183695 Score = 40.1 bits (20), Expect = 6.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 72 gcagcagcaaccttccaggatcaagcaa 99 |||||| |||||| |||||||||||||| Sbjct: 118142 gcagcatcaacctcccaggatcaagcaa 118115
>dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete genome Length = 1849742 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 131 ccgtggccgccaccgccacc 150 |||||||||||||||||||| Sbjct: 1245761 ccgtggccgccaccgccacc 1245780
>gb|AC097280.8| Oryza sativa chromosome 3 BAC OSJNBb0111B07 genomic sequence, complete sequence Length = 129647 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 129 cgccgtggccgccaccgcca 148 |||||||||||||||||||| Sbjct: 3417 cgccgtggccgccaccgcca 3436
>gb|AF497482.1| Micromonospora echinospora calicheamicin biosynthetic locus, complete sequence Length = 90348 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 192 cggaccagctcccgcaccgg 211 |||||||||||||||||||| Sbjct: 32283 cggaccagctcccgcaccgg 32302
>gb|AE005036.1| Halobacterium sp. NRC-1 section 67 of 170 of the complete genome Length = 14461 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 255 cttgaccgcgctcgtcttcg 274 |||||||||||||||||||| Sbjct: 8330 cttgaccgcgctcgtcttcg 8311
>dbj|AP000811.4| Homo sapiens genomic DNA, chromosome 11q clone:RP11-777F6, complete sequences Length = 176953 Score = 40.1 bits (20), Expect = 6.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 70 ctgcagcagcaaccttccaggatcaagc 97 |||||||| |||||||||||| |||||| Sbjct: 58142 ctgcagcatcaaccttccaggctcaagc 58169
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 208 ccggtctccggcgcgtcggtggcc 231 ||||||||||||||| |||||||| Sbjct: 4801759 ccggtctccggcgcgccggtggcc 4801736
>emb|BX530024.6| Zebrafish DNA sequence from clone RP71-39B20, complete sequence Length = 146464 Score = 40.1 bits (20), Expect = 6.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 406 catttttcttatatataaaagccatttt 433 ||||||| |||||||||||| ||||||| Sbjct: 12015 cattttttttatatataaaatccatttt 12042
>gb|AE017221.1| Thermus thermophilus HB27, complete genome Length = 1894877 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 131 ccgtggccgccaccgccacc 150 |||||||||||||||||||| Sbjct: 919485 ccgtggccgccaccgccacc 919504
>ref|NM_001039428.1| Tribolium castaneum chitinase 5 (Chi-5), mRNA gb|AY873916.1| Tribolium castaneum chitinase 6 (Chi-6) mRNA, complete cds Length = 1241 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 134 tggccgccaccgccaccgtc 153 |||||||||||||||||||| Sbjct: 576 tggccgccaccgccaccgtc 557
>emb|AL606628.3|OSJN00055 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0017B10, complete sequence Length = 150957 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 136 gccgccaccgccaccgtcgt 155 |||||||||||||||||||| Sbjct: 145420 gccgccaccgccaccgtcgt 145439
>emb|AL591978.1| Listeria monocytogenes strain EGD, complete genome, segment 6/12 Length = 250050 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 414 ttatatataaaagccatttt 433 |||||||||||||||||||| Sbjct: 101838 ttatatataaaagccatttt 101819
>emb|AL671090.9| Mouse DNA sequence from clone RP23-154A10 on chromosome 4, complete sequence Length = 197665 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 400 cacatacatttttcttatatataa 423 ||||||||||||||| |||||||| Sbjct: 164981 cacatacatttttctaatatataa 164958
>gb|AC161527.18| Mus musculus chromosome 3, clone RP23-174B21, complete sequence Length = 207130 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 404 tacatttttcttatatataa 423 |||||||||||||||||||| Sbjct: 124024 tacatttttcttatatataa 124043
>gb|M19883.1|HALFLA12 H.halobium flagellin A1 and A2 genes, complete cds Length = 1983 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 255 cttgaccgcgctcgtcttcg 274 |||||||||||||||||||| Sbjct: 1043 cttgaccgcgctcgtcttcg 1024
>dbj|AP005432.2| Homo sapiens genomic DNA, chromosome 18 clone:RP11-61L19, complete sequence Length = 140739 Score = 40.1 bits (20), Expect = 6.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 70 ctgcagcagcaaccttccaggatcaagc 97 ||||||| ||||||| |||||||||||| Sbjct: 79003 ctgcagccgcaacctcccaggatcaagc 78976 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 87,727,412 Number of extensions: 5027509 Number of successful extensions: 414702 Number of sequences better than 10.0: 87 Number of HSP's gapped: 414702 Number of HSP's successfully gapped: 90 Length of query: 456 Length of database: 18,610,659,111 Length adjustment: 22 Effective length of query: 434 Effective length of database: 18,508,616,841 Effective search space: 8032739708994 Effective search space used: 8032739708994 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 13 (26.3 bits)