ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf19k16
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1Q5G8Z3:EA1_MAIZE Protein EGG APPARATUS-1 - Zea mays (Maize) 36 0.18
2P07856:SERI1_BOMMO Sericin 1 precursor - Bombyx mori (Silk moth) 36 0.24
3Q10977:PPSA_MYCTU Phenolpthiocerol synthesis polyketide synthase... 32 2.6
4Q1LRQ3:PTH_RALME Peptidyl-tRNA hydrolase - Ralstonia metallidura... 31 7.7
5Q4JUN0:GATB_CORJK Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransfera... 31 7.7

>Q5G8Z3:EA1_MAIZE Protein EGG APPARATUS-1 - Zea mays (Maize)|
          Length = 94
 Score = 36.2 bits (82), Expect = 0.18
 Identities = 26/74 (35%), Positives = 34/74 (45%), Gaps = 5/74 (6%)
 Frame = +3

Query: 381 PAKLSTRD----GAVGTA-AMVIGGAVGAYFLWXXXXXXXXXXXXXXXXXXXXFLISRTA 545
           PA ++ +D    GA+G A A    G  G YFLW                    ++I R  
Sbjct: 5   PAIVNMKDDDGIGAMGAAVAFAAMGVFGIYFLWPVVGPTSAGMMMKAPGAAG-WVICRAV 63

Query: 546 FVANPQVYYQILRT 587
           F ANPQ+Y+ ILRT
Sbjct: 64  FEANPQLYFTILRT 77



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>P07856:SERI1_BOMMO Sericin 1 precursor - Bombyx mori (Silk moth)|
          Length = 1186

 Score = 35.8 bits (81), Expect = 0.24
 Identities = 24/80 (30%), Positives = 37/80 (46%)
 Frame = +3

Query: 117 VASTVSLAKPYLPSKLTEMNTGGIVAGLGYVKNHTGAAMASTVSLAKPYLPAKLTEMSTG 296
           V+ST S +     SK     T G  +  GY  +H G +++ST S +      K    ST 
Sbjct: 592 VSSTGSTSNTDSSSKSAGSRTSGGSSTYGYSSSHRGGSVSSTGSSSNTDSSTKNAGSSTS 651

Query: 297 DIVTGLGYVKNHTGAAMAST 356
              +  GY  +H G +++ST
Sbjct: 652 GGSSTYGYSSSHRGGSVSST 671



 Score = 34.3 bits (77), Expect = 0.69
 Identities = 23/84 (27%), Positives = 38/84 (45%)
 Frame = +3

Query: 105 QASAVASTVSLAKPYLPSKLTEMNTGGIVAGLGYVKNHTGAAMASTVSLAKPYLPAKLTE 284
           +  +V+ST S +     +K    +T G  +  GY  +H G +++ST S +      K   
Sbjct: 626 RGGSVSSTGSSSNTDSSTKNAGSSTSGGSSTYGYSSSHRGGSVSSTGSSSNTDSSTKSAG 685

Query: 285 MSTGDIVTGLGYVKNHTGAAMAST 356
            ST    +  GY   H G  ++ST
Sbjct: 686 SSTSGGSSTYGYSSRHRGGRVSST 709



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>Q10977:PPSA_MYCTU Phenolpthiocerol synthesis polyketide synthase ppsA - Mycobacterium|
            tuberculosis
          Length = 1876

 Score = 32.3 bits (72), Expect = 2.6
 Identities = 29/102 (28%), Positives = 47/102 (46%), Gaps = 12/102 (11%)
 Frame = +3

Query: 42   GKPGEMSTRDLL-----------FSGLDLVKQQASAVASTVSLAKPY-LPSKLTEMNTGG 185
            G+P E + RDL+             GL      AS    + +L     LP  L E +TG 
Sbjct: 1124 GQPPERAHRDLIPDLAELLAMRGIDGLPFSWTVASWTQHSSNLTVAIDLPEALPEGSTGP 1183

Query: 186  IVAGLGYVKNHTGAAMASTVSLAKPYLPAKLTEMSTGDIVTG 311
            ++    ++      A  S V+ ++ Y+PA + ++S GD+VTG
Sbjct: 1184 LLDAAVHL------AALSDVADSRLYVPASIEQISLGDVVTG 1219



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>Q1LRQ3:PTH_RALME Peptidyl-tRNA hydrolase - Ralstonia metallidurans (strain CH34 /|
           ATCC 43123 / DSM 2839)
          Length = 198

 Score = 30.8 bits (68), Expect = 7.7
 Identities = 27/84 (32%), Positives = 34/84 (40%), Gaps = 10/84 (11%)
 Frame = -2

Query: 611 GGGRRGPSGAEDLVVDLR----------VGHKRRAGNQEAGGTRRLHHXXXXXXXGCSRP 462
           GGG  G +G +D+   L           VGH R A    AGG   + +          R 
Sbjct: 107 GGGSGGHNGLKDISAHLTTQDYWRLRIGVGHPRNAPGGAAGGREDVVNFVLKPP----RK 162

Query: 461 EKVGAHGAPDDHRRGPHGTVARGE 390
           E+  A     D   GP GT+ARGE
Sbjct: 163 EEQQAIDEAIDRCIGPLGTLARGE 186



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>Q4JUN0:GATB_CORJK Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B -|
           Corynebacterium jeikeium (strain K411)
          Length = 505

 Score = 30.8 bits (68), Expect = 7.7
 Identities = 19/53 (35%), Positives = 29/53 (54%)
 Frame = +3

Query: 51  GEMSTRDLLFSGLDLVKQQASAVASTVSLAKPYLPSKLTEMNTGGIVAGLGYV 209
           G+ + + +  SGLD+   Q + VAS V+  K  L +KL      G++AG G V
Sbjct: 382 GKANEQGVELSGLDITPTQVARVASLVNEGK--LTTKLARQAVDGVLAGEGDV 432


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 144,672,421
Number of extensions: 3115702
Number of successful extensions: 8780
Number of sequences better than 10.0: 5
Number of HSP's gapped: 8769
Number of HSP's successfully gapped: 6
Length of query: 298
Length of database: 100,686,439
Length adjustment: 112
Effective length of query: 186
Effective length of database: 69,965,399
Effective search space: 13013564214
Effective search space used: 13013564214
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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