ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf19i14
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1AK119768:Os06g0256100 29 4.5
2Os03g0207700:Os03g0207700 28 5.9
3Os01g0733000:Os01g0733000 28 5.9
4Os03g0145000:Os03g0145000 28 7.7
5AK110432: 28 7.7 
>AK119768:Os06g0256100 |
          Length = 98
 Score = 28.9 bits (63), Expect = 4.5
 Identities = 14/36 (38%), Positives = 16/36 (44%)
 Frame = +1

Query: 208 GDCCSRTPDTPDHLCQCRRWTPKSIFAVAVISPRVC 315
           G   SR    P HLC C RW       +A +SP  C
Sbjct: 48  GSPTSRASYPPGHLCHCHRW------RMATVSPFSC 77
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>Os03g0207700:Os03g0207700 |
          Length = 144

 Score = 28.5 bits (62), Expect = 5.9
 Identities = 19/53 (35%), Positives = 23/53 (43%)
 Frame = +1

Query: 121 AALDHLRRHPLPVDALDHRCSCRTPPTISGDCCSRTPDTPDHLCQCRRWTPKS 279
           AAL    RHP P++ +        PP +          TP H  QCRR TP S
Sbjct: 45  AALSRSPRHPSPLEPI--------PPPVHRR-------TPHHSDQCRRRTPSS 82
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>Os01g0733000:Os01g0733000 |
          Length = 185

 Score = 28.5 bits (62), Expect = 5.9
 Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = +1

Query: 256 CRRWTPKSIFAV-AVISPRVCHPGRCRARHPGC 351
           CR   P+ + AV AVI+ R+   GR R RH  C
Sbjct: 132 CRHLAPRVLGAVVAVIASRLARTGRRRRRHLAC 164
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>Os03g0145000:Os03g0145000 |
          Length = 1324

 Score = 28.1 bits (61), Expect = 7.7
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +1

Query: 148  PLPVDALDHRCSCRTPPTISGDCCSRTPD 234
            PL  D L  RC+ R PPT    C  ++PD
Sbjct: 1170 PLRRDPLSRRCAAREPPT--RRCAEKSPD 1196
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>AK110432: |
          Length = 269

 Score = 28.1 bits (61), Expect = 7.7
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = -1

Query: 368 TSWRERQPGWRARQRP 321
           T WR+  PGWRA  RP
Sbjct: 156 TLWRDSLPGWRAAARP 171


  Database: orf_amino.fa.out
    Posted date:  Jul 26, 2007 11:37 AM
  Number of letters in database: 15,399,855
  Number of sequences in database:  40,041
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 40041
Number of Hits to DB: 22,877,836
Number of extensions: 507223
Number of successful extensions: 1342
Number of sequences better than 10.0: 5
Number of HSP's gapped: 1341
Number of HSP's successfully gapped: 5
Length of query: 275
Length of database: 15,399,855
Length adjustment: 99
Effective length of query: 176
Effective length of database: 11,435,796
Effective search space: 2012700096
Effective search space used: 2012700096
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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