ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf19i14
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|CT831879.1| Oryza sativa (indica cultivar-group) cDNA clone:... 44 0.79
2ref|NM_001064810.1| Oryza sativa (japonica cultivar-group) Os06g... 44 0.79
3dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.79
4dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete g... 44 0.79
5dbj|AP004744.2| Oryza sativa (japonica cultivar-group) genomic D... 44 0.79
6dbj|AP005769.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.79
7dbj|AK099401.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.79
8gb|AE017221.1| Thermus thermophilus HB27, complete genome 44 0.79
9gb|U55029.1|CFU55029 Canis familiaris MHC class I DLA-53 gene, e... 42 3.1
10gb|AC090618.11| Homo sapiens chromosome 17, clone RP11-763E3, co... 42 3.1
11dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 42 3.1
12gb|AC036214.9| Homo sapiens chromosome 8, clone RP11-26J3, compl... 42 3.1
13gb|AC026467.6| Homo sapiens chromosome 16 clone RP11-410M9, comp... 42 3.1
14gb|AC018952.9| Homo sapiens chromosome 8, clone RP11-498N9, comp... 42 3.1
15gb|AC011073.8| Homo sapiens chromosome 17, clone RP11-51E18, com... 42 3.1
16emb|AJ249324.1|MXP249324 Mentha x piperita mRNA for isopentenyl ... 42 3.1
17emb|CR932777.1| Human DNA sequence from clone XX-NCIH2171_7H20, ... 42 3.1
18gb|AC135049.2| Homo sapiens chromosome 16 clone RP11-142N21, com... 42 3.1
19emb|CR381644.8| Zebrafish DNA sequence from clone CH211-80A15 in... 42 3.1
20gb|U47924.1|HSU47924 Human chromosome 12p13 sequence, complete s... 42 3.1
21gb|AC108675.3| Homo sapiens 3 BAC RP11-760N13 (Roswell Park Canc... 42 3.1
22emb|AL935276.16| Zebrafish DNA sequence from clone CH211-273J2, ... 42 3.1
23gb|AF179283.1|AF179283 Mentha x piperita isopentenyl monophospha... 42 3.1
24emb|AL731609.2|OSJN00259 Oryza sativa genomic DNA, chromosome 4,... 42 3.1
25gb|U55026.1|CFU55026 Canis familiaris MHC class I DLA-12 gene, c... 42 3.1

>emb|CT831879.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN053O23, full
           insert sequence
          Length = 845
 Score = 44.1 bits (22), Expect = 0.79
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 120 cgccgccctcgaccatctccgccgcc 145
           ||||||||||||||| ||||||||||
Sbjct: 228 cgccgccctcgaccacctccgccgcc 203



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>ref|NM_001064810.1| Oryza sativa (japonica cultivar-group) Os06g0661500 (Os06g0661500)
           mRNA, complete cds
          Length = 830

 Score = 44.1 bits (22), Expect = 0.79
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 120 cgccgccctcgaccatctccgccgcc 145
           ||||||||||||||| ||||||||||
Sbjct: 230 cgccgccctcgaccacctccgccgcc 205



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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6
          Length = 30731886

 Score = 44.1 bits (22), Expect = 0.79
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                          
Query: 120      cgccgccctcgaccatctccgccgcc 145
                ||||||||||||||| ||||||||||
Sbjct: 26878713 cgccgccctcgaccacctccgccgcc 26878738



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>dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete genome
          Length = 1849742

 Score = 44.1 bits (22), Expect = 0.79
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 77     cccccgaggccccgaggccccg 98
              ||||||||||||||||||||||
Sbjct: 593001 cccccgaggccccgaggccccg 593022



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>dbj|AP004744.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
            clone:OSJNBb0065C04
          Length = 165270

 Score = 44.1 bits (22), Expect = 0.79
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 120  cgccgccctcgaccatctccgccgcc 145
            ||||||||||||||| ||||||||||
Sbjct: 2474 cgccgccctcgaccacctccgccgcc 2499



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>dbj|AP005769.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
              clone:OSJNBa0051O02
          Length = 169532

 Score = 44.1 bits (22), Expect = 0.79
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 120    cgccgccctcgaccatctccgccgcc 145
              ||||||||||||||| ||||||||||
Sbjct: 133339 cgccgccctcgaccacctccgccgcc 133364



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>dbj|AK099401.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001E16, full
           insert sequence
          Length = 830

 Score = 44.1 bits (22), Expect = 0.79
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 120 cgccgccctcgaccatctccgccgcc 145
           ||||||||||||||| ||||||||||
Sbjct: 230 cgccgccctcgaccacctccgccgcc 205



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>gb|AE017221.1| Thermus thermophilus HB27, complete genome
          Length = 1894877

 Score = 44.1 bits (22), Expect = 0.79
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 77     cccccgaggccccgaggccccg 98
              ||||||||||||||||||||||
Sbjct: 246774 cccccgaggccccgaggccccg 246795



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>gb|U55029.1|CFU55029 Canis familiaris MHC class I DLA-53 gene, exons 1-3
          Length = 3580

 Score = 42.1 bits (21), Expect = 3.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 78   ccccgaggccccgaggccccg 98
            |||||||||||||||||||||
Sbjct: 1237 ccccgaggccccgaggccccg 1217



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>gb|AC090618.11| Homo sapiens chromosome 17, clone RP11-763E3, complete sequence
          Length = 195031

 Score = 42.1 bits (21), Expect = 3.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 544    ttgagacaatgaagactgaag 564
              |||||||||||||||||||||
Sbjct: 160826 ttgagacaatgaagactgaag 160846



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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4
          Length = 35498469

 Score = 42.1 bits (21), Expect = 3.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 119      tcgccgccctcgaccatctccgccg 143
                ||||||| |||||||||||||||||
Sbjct: 13660116 tcgccgcgctcgaccatctccgccg 13660140



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>gb|AC036214.9| Homo sapiens chromosome 8, clone RP11-26J3, complete sequence
          Length = 160545

 Score = 42.1 bits (21), Expect = 3.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 611   aagatgtcagctttctctata 631
             |||||||||||||||||||||
Sbjct: 30572 aagatgtcagctttctctata 30592



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>gb|AC026467.6| Homo sapiens chromosome 16 clone RP11-410M9, complete sequence
          Length = 148054

 Score = 42.1 bits (21), Expect = 3.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 67     cctccaggtgcccccgaggcc 87
              |||||||||||||||||||||
Sbjct: 126630 cctccaggtgcccccgaggcc 126650



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>gb|AC018952.9| Homo sapiens chromosome 8, clone RP11-498N9, complete sequence
          Length = 180535

 Score = 42.1 bits (21), Expect = 3.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 611    aagatgtcagctttctctata 631
              |||||||||||||||||||||
Sbjct: 102321 aagatgtcagctttctctata 102301



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>gb|AC011073.8| Homo sapiens chromosome 17, clone RP11-51E18, complete sequence
          Length = 160616

 Score = 42.1 bits (21), Expect = 3.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 544    ttgagacaatgaagactgaag 564
              |||||||||||||||||||||
Sbjct: 154635 ttgagacaatgaagactgaag 154615



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>emb|AJ249324.1|MXP249324 Mentha x piperita mRNA for isopentenyl monophosphate kinase (ipk
           gene)
          Length = 1481

 Score = 42.1 bits (21), Expect = 3.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 553 tgaagactgaagctttttgcg 573
           |||||||||||||||||||||
Sbjct: 161 tgaagactgaagctttttgcg 141



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>emb|CR932777.1| Human DNA sequence from clone XX-NCIH2171_7H20, complete sequence
          Length = 115459

 Score = 42.1 bits (21), Expect = 3.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 79    cccgaggccccgaggccccga 99
             |||||||||||||||||||||
Sbjct: 38265 cccgaggccccgaggccccga 38245



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>gb|AC135049.2| Homo sapiens chromosome 16 clone RP11-142N21, complete sequence
          Length = 115368

 Score = 42.1 bits (21), Expect = 3.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 67     cctccaggtgcccccgaggcc 87
              |||||||||||||||||||||
Sbjct: 103205 cctccaggtgcccccgaggcc 103225



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>emb|CR381644.8| Zebrafish DNA sequence from clone CH211-80A15 in linkage group 8,
             complete sequence
          Length = 171750

 Score = 42.1 bits (21), Expect = 3.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 597   gatgatgaagcaaaaagatgt 617
             |||||||||||||||||||||
Sbjct: 91327 gatgatgaagcaaaaagatgt 91307



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>gb|U47924.1|HSU47924 Human chromosome 12p13 sequence, complete sequence
          Length = 222930

 Score = 42.1 bits (21), Expect = 3.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 79    cccgaggccccgaggccccga 99
             |||||||||||||||||||||
Sbjct: 79762 cccgaggccccgaggccccga 79782



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>gb|AC108675.3| Homo sapiens 3 BAC RP11-760N13 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 188894

 Score = 42.1 bits (21), Expect = 3.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 463   ttccaagaccctgttgaatctcaac 487
             |||| ||||||||||||||||||||
Sbjct: 71192 ttcctagaccctgttgaatctcaac 71168



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>emb|AL935276.16| Zebrafish DNA sequence from clone CH211-273J2, complete sequence
          Length = 164481

 Score = 42.1 bits (21), Expect = 3.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 763    cttcctttgtaacttctattt 783
              |||||||||||||||||||||
Sbjct: 151981 cttcctttgtaacttctattt 152001



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>gb|AF179283.1|AF179283 Mentha x piperita isopentenyl monophosphate kinase (IPK) mRNA,
           complete cds
          Length = 1481

 Score = 42.1 bits (21), Expect = 3.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 553 tgaagactgaagctttttgcg 573
           |||||||||||||||||||||
Sbjct: 161 tgaagactgaagctttttgcg 141



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>emb|AL731609.2|OSJN00259 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0079M09,
             complete sequence
          Length = 187359

 Score = 42.1 bits (21), Expect = 3.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 119   tcgccgccctcgaccatctccgccg 143
             ||||||| |||||||||||||||||
Sbjct: 54724 tcgccgcgctcgaccatctccgccg 54748



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>gb|U55026.1|CFU55026 Canis familiaris MHC class I DLA-12 gene, complete cds
          Length = 3943

 Score = 42.1 bits (21), Expect = 3.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 78   ccccgaggccccgaggccccg 98
            |||||||||||||||||||||
Sbjct: 1159 ccccgaggccccgaggccccg 1139


  Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
  GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
    Posted date:  Dec 3, 2006  5:45 PM
  Number of letters in database: 18,610,659,111
  Number of sequences in database:  4,638,285
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4638285
Number of Hits to DB: 131,548,230
Number of extensions: 6862968
Number of successful extensions: 161825
Number of sequences better than 10.0: 25
Number of HSP's gapped: 161825
Number of HSP's successfully gapped: 25
Length of query: 827
Length of database: 18,610,659,111
Length adjustment: 22
Effective length of query: 805
Effective length of database: 18,508,616,841
Effective search space: 14899436557005
Effective search space used: 14899436557005
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 14 (28.2 bits)
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