ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf22m24 |
|---|---|
| Clone Library Name | barley_pub |
>Q9KTD3:CYSZ_VIBCH Protein cysZ homolog - Vibrio cholerae| Length = 250 Score = 32.0 bits (71), Expect = 1.3 Identities = 24/72 (33%), Positives = 33/72 (45%) Frame = +2 Query: 95 WVRPEVYPLFAATGVAIGICAFSLLRNITGNPEVRVSKMGRAAGVLENHEEGRRYAEHGL 274 W+ ++PL A T +A FS L N +P G A +E H G R E G+ Sbjct: 67 WLSYVLWPLLALTILATFSYFFSTLANFIASP-----FNGLLAEKVEQHLSGERIGEEGV 121 Query: 275 RAYVQDKTPEIM 310 A V+D P I+ Sbjct: 122 WALVKD-VPRIL 132
>Q9JLV1:BAG3_MOUSE BAG family molecular chaperone regulator 3 - Mus musculus (Mouse)| Length = 577 Score = 31.6 bits (70), Expect = 1.7 Identities = 18/53 (33%), Positives = 28/53 (52%) Frame = +3 Query: 189 QKSGSARWGGQQECLRTMRRAGATPSTASEPTCRTRPPRSCQESTSSSPARNE 347 Q+S S GG E +T ++ G P+TA+ T +PP + S SPA ++ Sbjct: 134 QRSQSPLRGGMTEAAQTDKQCGQMPATAT--TAAAQPPTAHGPERSQSPAASD 184
>Q9UPA5:BSN_HUMAN Protein bassoon - Homo sapiens (Human)| Length = 3926 Score = 31.2 bits (69), Expect = 2.2 Identities = 14/39 (35%), Positives = 21/39 (53%) Frame = +3 Query: 219 QQECLRTMRRAGATPSTASEPTCRTRPPRSCQESTSSSP 335 ++E + +++AG PS+ S R RPP Q S SP Sbjct: 3469 EREAVERLQKAGPKPSSLSMAHSRVRPPMRSQASEEESP 3507
>Q5UP42:YL870_MIMIV Uncharacterized protein L870 - Mimivirus| Length = 353 Score = 30.8 bits (68), Expect = 2.9 Identities = 22/57 (38%), Positives = 33/57 (57%), Gaps = 6/57 (10%) Frame = +1 Query: 367 CDSLLETV--VVKCKPISSIQ*CC---CVHNSEDIIQYLLMKEPCDV-CWLAKKKKK 519 C S L+ V ++K PIS +Q C +H++ D+++YLL V C L+KKK K Sbjct: 139 CFSNLDVVKSIIKYIPISLLQNCLNHGFIHSNNDVVEYLLKTYMKYVKCILSKKKIK 195
>P53986:MOT1_MOUSE Monocarboxylate transporter 1 - Mus musculus (Mouse)| Length = 493 Score = 30.0 bits (66), Expect = 4.9 Identities = 11/22 (50%), Positives = 16/22 (72%) Frame = +2 Query: 89 SKWVRPEVYPLFAATGVAIGIC 154 +KW+RP + FAA+ VA G+C Sbjct: 315 TKWIRPRIQYFFAASVVANGVC 336
>O35439:MOT1_MERUN Monocarboxylate transporter 1 - Meriones unguiculatus (Mongolian| jird) (Mongolian gerbil) Length = 76 Score = 30.0 bits (66), Expect = 4.9 Identities = 11/22 (50%), Positives = 16/22 (72%) Frame = +2 Query: 89 SKWVRPEVYPLFAATGVAIGIC 154 +KW+RP + FAA+ VA G+C Sbjct: 21 TKWIRPRIQYFFAASVVANGVC 42
>Q03064:MOT1_CRILO Monocarboxylate transporter 1 - Cricetulus longicaudatus| (Long-tailed hamster) (Chinese hamster) Length = 494 Score = 30.0 bits (66), Expect = 4.9 Identities = 11/22 (50%), Positives = 16/22 (72%) Frame = +2 Query: 89 SKWVRPEVYPLFAATGVAIGIC 154 +KW+RP + FAA+ VA G+C Sbjct: 315 TKWIRPRIQYFFAASVVANGVC 336
>Q5KDV1:CWC21_CRYNE Pre-mRNA-splicing factor CWC21 - Cryptococcus neoformans| (Filobasidiella neoformans) Length = 205 Score = 30.0 bits (66), Expect = 4.9 Identities = 12/23 (52%), Positives = 17/23 (73%) Frame = +2 Query: 191 EVRVSKMGRAAGVLENHEEGRRY 259 E+ +S++ RA GV NHEEGR + Sbjct: 125 EIEMSRLQRALGVSVNHEEGRAF 147
>O88778:BSN_RAT Protein bassoon - Rattus norvegicus (Rat)| Length = 3938 Score = 30.0 bits (66), Expect = 4.9 Identities = 16/47 (34%), Positives = 24/47 (51%) Frame = +3 Query: 195 SGSARWGGQQECLRTMRRAGATPSTASEPTCRTRPPRSCQESTSSSP 335 S S + ++E + +++AG PS+ S R RPP Q S SP Sbjct: 3457 SRSKGYERERETAQRLQKAGPKPSSLSMAHGRARPPMRSQASEEESP 3503
>P51826:AFF3_HUMAN AF4/FMR2 family member 3 - Homo sapiens (Human)| Length = 1226 Score = 30.0 bits (66), Expect = 4.9 Identities = 16/38 (42%), Positives = 20/38 (52%) Frame = +3 Query: 219 QQECLRTMRRAGATPSTASEPTCRTRPPRSCQESTSSS 332 QQ RT RA + + +P CRT P S S+SSS Sbjct: 381 QQAAQRTALRALSDSAVVQQPNCRTSVPSSKGSSSSSS 418
>Q3MHW6:MOT1_BOVIN Monocarboxylate transporter 1 - Bos taurus (Bovine)| Length = 501 Score = 29.6 bits (65), Expect = 6.5 Identities = 12/22 (54%), Positives = 16/22 (72%) Frame = +2 Query: 89 SKWVRPEVYPLFAATGVAIGIC 154 +KWVRP V FAA+ +A G+C Sbjct: 322 TKWVRPRVQYFFAASIIANGLC 343
>Q5SSI6:UTP18_MOUSE U3 small nucleolar RNA-associated protein 18 homolog - Mus musculus| (Mouse) Length = 552 Score = 29.3 bits (64), Expect = 8.4 Identities = 14/39 (35%), Positives = 20/39 (51%) Frame = +3 Query: 234 RTMRRAGATPSTASEPTCRTRPPRSCQESTSSSPARNEA 350 R RRAGATP + P + P ++ + S + PA A Sbjct: 10 RRDRRAGATPGRKARPGSGSTPAKAARSSQRTQPAEPRA 48
>Q86UT5:PDZD3_HUMAN PDZ domain-containing protein 3 - Homo sapiens (Human)| Length = 571 Score = 29.3 bits (64), Expect = 8.4 Identities = 15/35 (42%), Positives = 17/35 (48%) Frame = -2 Query: 301 GGLVLHVGSEAVLGVAPALLMVLKHSCCPPHLADP 197 G V E VLG+ P L + CCPPH DP Sbjct: 77 GHRVCQAHGEPVLGLCPLLPLF----CCPPHPPDP 107
>P53987:MOT1_RAT Monocarboxylate transporter 1 - Rattus norvegicus (Rat)| Length = 494 Score = 29.3 bits (64), Expect = 8.4 Identities = 11/22 (50%), Positives = 16/22 (72%) Frame = +2 Query: 89 SKWVRPEVYPLFAATGVAIGIC 154 ++W+RP V FAA+ VA G+C Sbjct: 315 TRWIRPRVQYFFAASVVANGVC 336
>O86013:BPHF_SPHAR 4-hydroxy-2-oxovalerate aldolase - Sphingomonas aromaticivorans| Length = 262 Score = 29.3 bits (64), Expect = 8.4 Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 8/61 (13%) Frame = +2 Query: 125 AATGVAIGICAFSLLRNITGNPEVRVSKMGRAAGVLENHEE--------GRRYAEHGLRA 280 AAT +G +F L +TG R+ G+ AG+L E G R+ +G+ + Sbjct: 179 AATEGLLGASSFDALFKLTGEALARIVATGKPAGILSRDERLVQQFLDGGARFIANGIDS 238 Query: 281 Y 283 + Sbjct: 239 F 239 Database: uniprot_sprot.fasta.out Posted date: Jul 19, 2007 5:58 PM Number of letters in database: 100,686,439 Number of sequences in database: 274,295 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 274295 Number of Hits to DB: 72,959,763 Number of extensions: 1350786 Number of successful extensions: 4234 Number of sequences better than 10.0: 15 Number of HSP's gapped: 4226 Number of HSP's successfully gapped: 15 Length of query: 173 Length of database: 100,686,439 Length adjustment: 105 Effective length of query: 68 Effective length of database: 71,885,464 Effective search space: 4888211552 Effective search space used: 4888211552 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
