ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf17c22 |
|---|---|
| Clone Library Name | barley_pub |
>LOC_Os08g09320:12008.t00817:unspliced-genomic vacuolar protein sorting protein 72, putative, expressed| Length = 3434 Score = 84.0 bits (177), Expect(7) = 7e-61 Identities = 32/41 (78%), Positives = 38/41 (92%) Frame = +1 / +1 Query: 364 SFLKEEPDKKRPNMSNMGELFESVAGEHSTPKKKRIEGRSP 486 SFLKEE D+KRPN++NMGELFES+ GE+STPKK+RIE RSP Sbjct: 2962 SFLKEEADRKRPNLANMGELFESITGEYSTPKKRRIEARSP 3084 Score = 55.6 bits (115), Expect(7) = 7e-61 Identities = 23/29 (79%), Positives = 25/29 (86%) Frame = +1 / +3 Query: 169 RFHSRDGESRLEFINGASFGSELCTTSTP 255 +F + GESRLEFINGASFGSELCTTS P Sbjct: 2007 QFCAELGESRLEFINGASFGSELCTTSAP 2093 Score = 50.1 bits (103), Expect(7) = 7e-61 Identities = 19/24 (79%), Positives = 21/24 (87%) Frame = +1 / +3 Query: 298 KYRDPKTGLPYATMAAFKIIRESF 369 +YRDPKTGLPYAT AFKIIRE + Sbjct: 2754 RYRDPKTGLPYATKEAFKIIRERY 2825 Score = 49.6 bits (102), Expect(7) = 7e-61 Identities = 21/22 (95%), Positives = 21/22 (95%) Frame = +1 / +3 Query: 1 KSKEGEEKRMTQEEMLLEAAET 66 K KEGEEKRMTQEEMLLEAAET Sbjct: 1281 KKKEGEEKRMTQEEMLLEAAET 1346 Score = 49.6 bits (102), Expect(7) = 7e-61 Identities = 20/24 (83%), Positives = 22/24 (91%) Frame = +1 / +1 Query: 487 ISVDLRHGGRFRRIPALDVMDED* 558 IS D RHGGRFRRIPALD++DED* Sbjct: 3088 ISSDQRHGGRFRRIPALDLLDED* 3159 Score = 37.3 bits (75), Expect(7) = 7e-61 Identities = 13/15 (86%), Positives = 14/15 (93%) Frame = +1 / +1 Query: 259 PEKSVCVVTGLPAKY 303 PEKS+C VTGLPAKY Sbjct: 2233 PEKSICAVTGLPAKY 2277 Score = 36.3 bits (73), Expect(7) = 7e-61 Identities = 19/40 (47%), Positives = 20/40 (50%) Frame = +2 / +1 Query: 68 RS*T*EILNVFWQEXXXXXXXXXXXXXSMRVLHFDFTLGM 187 RS T*EILNV+WQE MRVL F F M Sbjct: 1762 RSST*EILNVYWQERRRLRKKPLFIKLFMRVLRFGFAQEM 1881 Score = 73.9 bits (155), Expect(7) = 4e-49 Identities = 33/42 (78%), Positives = 34/42 (80%) Frame = -3 / -1 Query: 488 IGDLPSILFFLGVECSPATDSKSSPIFDMLGLFLSGSSFRKL 363 +GDL SIL FLGVE SP DSKSSPIF LGLFLS SSFRKL Sbjct: 3086 LGDLASILLFLGVEYSPVIDSKSSPIFAKLGLFLSASSFRKL 2961 Score = 54.2 bits (112), Expect(7) = 4e-49 Identities = 21/24 (87%), Positives = 23/24 (95%) Frame = -3 / -2 Query: 254 GVEVVQSSDPNDAPLMNSRRDSPS 183 G EVVQSSDPNDAPLMNS+RDSP+ Sbjct: 2092 GAEVVQSSDPNDAPLMNSKRDSPN 2021 Score = 46.9 bits (96), Expect(7) = 4e-49 Identities = 20/23 (86%), Positives = 21/23 (91%) Frame = -3 / -2 Query: 365 LSRMILNAAIVA*GNPVFGSRYL 297 LSRMILNA+ VA GNPVFGSRYL Sbjct: 2821 LSRMILNASFVAYGNPVFGSRYL 2753 Score = 45.5 bits (93), Expect(7) = 4e-49 Identities = 16/21 (76%), Positives = 17/21 (80%) Frame = -2 / -1 Query: 63 FSCFQEHLFLCHAFFFSLFTL 1 FSCFQ+HLFLCH FFSL L Sbjct: 1343 FSCFQQHLFLCHTLFFSLLFL 1281 Score = 39.6 bits (80), Expect(7) = 4e-49 Identities = 17/24 (70%), Positives = 19/24 (79%) Frame = -3 / -1 Query: 557 QSSSITSRAGIRLKRPPCLRSTDI 486 QSSS SRAGIR KRPPCL S ++ Sbjct: 3158 QSSSSKSRAGIRRKRPPCLWSDEM 3087 Score = 33.6 bits (67), Expect(7) = 4e-49 Identities = 13/15 (86%), Positives = 13/15 (86%) Frame = -3 / -1 Query: 302 YLAGSPVTTQTDFSG 258 YLAGSPVT Q DFSG Sbjct: 2276 YLAGSPVTAQIDFSG 2232 Score = 28.1 bits (55), Expect(7) = 4e-49 Identities = 16/36 (44%), Positives = 17/36 (47%) Frame = -2 / -1 Query: 174 KSKCRTLIDXXXXXXXXXXXXXSCQNTFKISHVHDL 67 K RTLI+ SCQ TFKIS V DL Sbjct: 1868 KPNRRTLINSFMNNGFFLNLLLSCQYTFKISQVDDL 1761 Score = 49.6 bits (102), Expect(7) = 8e-34 Identities = 24/41 (58%), Positives = 29/41 (70%) Frame = +3 / +3 Query: 363 EFPERGAG*EEAQHVKYGRTL*ISSWRTFYA*EEKNRGKIT 485 +FPERG EEAQ +YGR L*I++ R + EEKN GKIT Sbjct: 2961 QFPERGG*QEEAQLGEYGRAL*INNRRILHTQEEKN*GKIT 3083 Score = 43.2 bits (88), Expect(7) = 8e-34 Identities = 16/21 (76%), Positives = 18/21 (85%) Frame = +2 / +1 Query: 2 RVKREKKNA*HKKRCSWKQLK 64 R +REKK+ *HKKRC WKQLK Sbjct: 1282 RKRREKKSV*HKKRCCWKQLK 1344 Score = 40.9 bits (83), Expect(7) = 8e-34 Identities = 15/26 (57%), Positives = 20/26 (76%) Frame = +3 / +2 Query: 288 TSCQIP*SKDRITLCNNGSV*DHPRE 365 T QIP* KD + +CN GS+*+HPR+ Sbjct: 2744 TILQIP*PKDGVAICNKGSI*NHPRK 2821 Score = 39.1 bits (79), Expect(7) = 8e-34 Identities = 16/23 (69%), Positives = 18/23 (78%) Frame = +3 / +2 Query: 189 GITSGIH*WGIIWV*TLYNFNSL 257 G+T GIH GIIWV TLYN +SL Sbjct: 2027 GVTLGIHQRGIIWVRTLYNLSSL 2095 Score = 35.9 bits (72), Expect(7) = 8e-34 Identities = 16/24 (66%), Positives = 18/24 (75%) Frame = +3 / +3 Query: 486 NISRPKARWTLQTNTCS*CDGRGL 557 ++ RPKA TL TNTCS* GRGL Sbjct: 3087 HLIRPKAWRTLSTNTCS*FAGRGL 3158 Score = 30.4 bits (60), Expect(7) = 8e-34 Identities = 11/15 (73%), Positives = 12/15 (80%) Frame = +3 / +3 Query: 258 SGEICLCCNRTSCQI 302 S EI LCCN TSCQ+ Sbjct: 2232 SREIYLCCNWTSCQV 2276 Score = 29.0 bits (57), Expect(7) = 8e-34 Identities = 11/14 (78%), Positives = 12/14 (85%) Frame = +3 / +2 Query: 69 DHEHEKS*TCSGKR 110 DH+ EKS*TC GKR Sbjct: 1763 DHQPEKS*TCIGKR 1804 Score = 45.1 bits (92), Expect(6) = 2e-24 Identities = 18/28 (64%), Positives = 21/28 (75%) Frame = -2 / -1 Query: 270 RFLRIRS*SCTKFRPK*CPINEFQT*FP 187 +F RS* CTKF PK*CP++EFQ * P Sbjct: 2108 KFALTRS*GCTKF*PK*CPVDEFQA*LP 2025 Score = 42.8 bits (87), Expect(6) = 2e-24 Identities = 19/32 (59%), Positives = 22/32 (68%) Frame = -1 / -2 Query: 484 VIFPRFFSS*A*NVRQLLIQRVLPYLTCWASS 389 VI P+FFSS ++ LLIQR LPY WASS Sbjct: 3082 VILPQFFSSWVWSILLLLIQRALPYSPSWASS 2987 Score = 36.8 bits (74), Expect(6) = 2e-24 Identities = 15/23 (65%), Positives = 19/23 (82%) Frame = -1 / -2 Query: 559 ISPRPSHQEQVFV*SVHRALGLL 491 +SPRP++QEQVFV SV A GL+ Sbjct: 3160 VSPRPANQEQVFVESVLHAFGLM 3092 Score = 35.9 bits (72), Expect(6) = 2e-24 Identities = 16/21 (76%), Positives = 17/21 (80%) Frame = -1 / -3 Query: 64 FQLLPRASLLVSCVFLLPLYS 2 FQLLP ASLLVS FLLP +S Sbjct: 1344 FQLLPTASLLVSYAFLLPPFS 1282 Score = 29.0 bits (57), Expect(6) = 2e-24 Identities = 11/16 (68%), Positives = 13/16 (81%) Frame = -2 / -3 Query: 303 VFGRKSCYNTNRFLRI 256 + GRKS Y+TNRFL I Sbjct: 2277 ILGRKSSYSTNRFLWI 2230 Score = 28.1 bits (55), Expect(6) = 2e-24 Identities = 14/34 (41%), Positives = 17/34 (50%) Frame = -2 / -1 Query: 393 LLIRLLFQETLSDDLKRCHCCIR*SCLWITVFGR 292 L+ L + SDD K CCI LW+TV R Sbjct: 2849 LITTKLERVPFSDDFKCFLCCIWQPRLWVTVSAR 2748 Score = 54.7 bits (113), Expect(4) = 5e-22 Identities = 22/46 (47%), Positives = 30/46 (65%) Frame = +2 / +1 Query: 188 GNHVWNSLMGHHLGLNFVQLQLLIRRNLFVL*QDFLPNTVIQRQDY 325 G+H WNS GHHLG NFVQ QLL+ N ++ +LP VI + ++ Sbjct: 2026 GSHAWNSSTGHHLGQNFVQPQLLVSANFHLVILCYLPLPVITKCEH 2163 Score = 43.7 bits (89), Expect(4) = 5e-22 Identities = 18/30 (60%), Positives = 22/30 (73%) Frame = +2 / +2 Query: 395 GPTCQIWENSLNQ*LANILRLRRKESREDH 484 GPT +IWE+SLNQ* N RR+E R+DH Sbjct: 2993 GPTWRIWESSLNQ*QENTPHPRREELRQDH 3082 Score = 37.7 bits (76), Expect(4) = 5e-22 Identities = 15/18 (83%), Positives = 17/18 (94%) Frame = +3 / +2 Query: 12 GRRKTHDTRRDALGSS*N 65 GRRK +DTRRDA+GSS*N Sbjct: 1292 GRRKAYDTRRDAVGSS*N 1345 Score = 35.4 bits (71), Expect(4) = 5e-22 Identities = 15/21 (71%), Positives = 16/21 (76%) Frame = +2 / +2 Query: 497 T*GTVDASDEYLLLM*WTRTD 559 T G DA DEYLLL+ WTRTD Sbjct: 3098 TKGMEDAFDEYLLLICWTRTD 3160 Score = 45.1 bits (92), Expect(5) = 2e-12 Identities = 19/28 (67%), Positives = 22/28 (78%) Frame = -2 / -3 Query: 447 MFASY*FKEFSHI*HVGPLLIRLLFQET 364 +F+ Y*FKE SHI VGPL + LLFQET Sbjct: 3045 VFSCY*FKELSHIRQVGPLPVSLLFQET 2962 Score = 33.6 bits (67), Expect(5) = 2e-12 Identities = 14/19 (73%), Positives = 17/19 (89%) Frame = -2 / -3 Query: 558 SVLVHHIKSRYSSEASTVP 502 SVLV IKSRYSS+AS++P Sbjct: 3159 SVLVQQIKSRYSSKASSMP 3103 Score = 27.6 bits (54), Expect(5) = 2e-12 Identities = 11/13 (84%), Positives = 12/13 (92%) Frame = -1 / -3 Query: 256 KELKLYKVQTQMM 218 KEL+LYKV TQMM Sbjct: 2094 KELRLYKVLTQMM 2056 Score = 26.7 bits (52), Expect(5) = 2e-12 Identities = 11/14 (78%), Positives = 11/14 (78%) Frame = -1 / -2 Query: 298 WQEVLLQHKQISPD 257 WQEV LQHK IS D Sbjct: 2272 WQEVQLQHK*ISLD 2231 Score = 23.1 bits (44), Expect(5) = 2e-12 Identities = 8/9 (88%), Positives = 9/9 (100%) Frame = -3 / -2 Query: 35 CVMRFSSPS 9 CV+RFSSPS Sbjct: 1315 CVIRFSSPS 1289 Score = 31.8 bits (63), Expect(2) = 0.021 Identities = 14/33 (42%), Positives = 18/33 (54%) Frame = +1 / +3 Query: 151 YEGPTLRFHSRDGESRLEFINGASFGSELCTTS 249 YEGPT+RF SRDG ++ + E TS Sbjct: 1845 YEGPTIRFCSRDGNFSIKISSSICLHLECGITS 1943 Score = 31.3 bits (62), Expect(2) = 0.021 Identities = 14/22 (63%), Positives = 17/22 (77%) Frame = +2 / +2 Query: 251 LLIRRNLFVL*QDFLPNTVIQR 316 L I+RNLFVL* DFLP+ +R Sbjct: 2225 LQIQRNLFVL*LDFLPSMFSER 2290
>LOC_Os03g29490:12003.t02571:unspliced-genomic hypothetical protein| Length = 1400 Score = 35.4 bits (71), Expect = 0.69 Identities = 11/28 (39%), Positives = 16/28 (57%) Frame = -3 / -1 Query: 683 IICNHTARDLCQVMLTWHHMQPCHQICP 600 ++C H + L V+L WH Q H +CP Sbjct: 1151 LLCMHVSSRLSNVVLLWHTHQRVHHLCP 1068
>LOC_Os12g42230:12012.t03897:unspliced-genomic pyruvate dehydrogenase E1 component subunit beta, putative, expressed| Length = 3444 Score = 34.5 bits (69), Expect = 1.3 Identities = 16/44 (36%), Positives = 19/44 (43%) Frame = +3 / +1 Query: 870 RRDCST*PQHCILTSNHGIRFRVILTLSLIFHSQ*LVAQCGFPC 1001 RR C PQH T H + + L L+ H Q L G PC Sbjct: 3163 RRHCILFPQH*SYTLTHALLVSLFFLLHLVLHVQFLYYMFGAPC 3294
>LOC_Os03g44500:12003.t03837:unspliced-genomic serine/threonine-protein phosphatase BSL2, putative, expressed| Length = 8753 Score = 33.6 bits (67), Expect = 2.5 Identities = 11/26 (42%), Positives = 16/26 (61%) Frame = -2 / +3 Query: 87 ISHVHDLSFSCFQEHLFLCHAFFFSL 10 + H ++ + F EHLF+CH FSL Sbjct: 7236 VKHFNNNCYLTFHEHLFMCHVQMFSL 7313
>LOC_Os05g01330:12005.t00036:unspliced-genomic expressed protein| Length = 2191 Score = 33.1 bits (66), Expect = 3.4 Identities = 16/50 (32%), Positives = 23/50 (46%) Frame = -3 / -1 Query: 563 EHQSSSITSRAGIRLKRPPCLRSTDIGDLPSILFFLGVECSPATDSKSSP 414 ++Q SS+ R G PC + + P+ FF+ S AT S S P Sbjct: 1903 QNQVSSVQYRGGHGANSKPCS*DPAVDEFPASFFFMSSNLSMATCSSSVP 1754
>LOC_Os11g07380:12011.t00629:unspliced-genomic hypothetical protein| Length = 1721 Score = 33.1 bits (66), Expect = 3.4 Identities = 13/47 (27%), Positives = 21/47 (44%) Frame = -1 / +2 Query: 670 TPPEISVKSC*HGIICNHAIRSVLSNMATYATTLSENISPRPSHQEQ 530 T PE S+ C*HG +H + + + +N+ H+EQ Sbjct: 1127 TTPETSIPHC*HGQPTHHLLHGLQGTLGVMLPLRKDNMEDHLRHEEQ 1267
>LOC_Os10g24000:12010.t01826:unspliced-genomic hypothetical protein| Length = 809 Score = 32.7 bits (65), Expect = 4.6 Identities = 11/24 (45%), Positives = 12/24 (50%) Frame = +2 / +2 Query: 749 EQYSDILCS*CRLWRWSPMACCKR 820 + Y DI C CR W WS C R Sbjct: 710 KDYIDIACCTCRPWYWSSRGACTR 781
>LOC_Os05g00998:12005.t00001:unspliced-genomic retrotransposon protein, putative, unclassified| Length = 1061 Score = 28.6 bits (56), Expect(2) = 5.2 Identities = 16/50 (32%), Positives = 21/50 (42%) Frame = -2 / +2 Query: 729 LSNHAVGRSPASPHANHMQPHRQRSLSSHANMASYATMPSDLSSVTWQPM 580 L + +V +PASPH H + + SS M S LS W M Sbjct: 56 LRHTSVATAPASPHCRHSARNGRTWPSSQVRMLMTLPSVSTLSCRKWCSM 205 Score = 24.4 bits (47), Expect(2) = 5.2 Identities = 14/39 (35%), Positives = 17/39 (43%) Frame = -3 / +1 Query: 554 SSSITSRAGIRLKRPPCLRSTDIGDLPSILFFLGVECSP 438 SS+ S A L PP RS + PS + CSP Sbjct: 874 SSTPASEAPSSLGTPPAWRSRALAPSPSPPSSVSTGCSP 990
>LOC_Os06g43670:12006.t04057:unspliced-genomic Leucine Rich Repeat family protein, expressed| Length = 12542 Score = 32.2 bits (64), Expect = 6.4 Identities = 10/26 (38%), Positives = 15/26 (57%) Frame = -3 / -3 Query: 677 CNHTARDLCQVMLTWHHMQPCHQICP 600 CN + D+ + L+ H CHQ+CP Sbjct: 10098 CNRSCNDVFTMPLSLH*FMVCHQLCP 10021
>LOC_Os06g22010:12006.t02016:unspliced-genomic NAD(P)H-dependent oxidoreductase, putative| Length = 3342 Score = 32.2 bits (64), Expect = 6.4 Identities = 17/62 (27%), Positives = 30/62 (48%) Frame = -1 / -3 Query: 682 SYATTPPEISVKSC*HGIICNHAIRSVLSNMATYATTLSENISPRPSHQEQVFV*SVHRA 503 S+A ++ S G++ AI + LSN+ +T+ + P PS + ++ HR Sbjct: 439 SFALLSTSFALLSTPAGLLTRRAIAAALSNLLRASTSHRIDPPPSPSSRRRLLTSPPHRL 260 Query: 502 LG 497 LG Sbjct: 259 LG 254
>LOC_Os10g24350:12010.t01860:unspliced-genomic conserved hypothetical protein| Length = 714 Score = 31.8 bits (63), Expect = 8.7 Identities = 18/45 (40%), Positives = 21/45 (46%) Frame = -3 / -1 Query: 548 SITSRAGIRLKRPPCLRSTDIGDLPSILFFLGVECSPATDSKSSP 414 S S A L RPP L I LP + C PA+ S+SSP Sbjct: 612 SRVSHARFPLLRPPSLVPDPIQTLPVPPLSVSAVCRPASPSESSP 478
>LOC_Os06g23130:12006.t02125:unspliced-genomic retrotransposon protein, putative, unclassified| Length = 2721 Score = 31.8 bits (63), Expect = 8.8 Identities = 14/38 (36%), Positives = 22/38 (57%) Frame = -2 / +1 Query: 684 NHMQPHRQRSLSSHANMASYATMPSDLSSVTWQPMQPH 571 +H + + +LSSH N T+PS+L+S +P PH Sbjct: 1249 SHSTTYFRSNLSSHPNTIP*NTIPSNLNSPKPKPPNPH 1362
>LOC_Os05g39530:12005.t03494:unspliced-genomic ribonuclease P/ ribonuclease, putative, expressed| Length = 5329 Score = 31.8 bits (63), Expect = 8.8 Identities = 14/33 (42%), Positives = 16/33 (48%) Frame = -2 / +2 Query: 708 RSPASPHANHMQPHRQRSLSSHANMASYATMPS 610 RSP P A PHR+RS + S A PS Sbjct: 89 RSPGPPLAPRQPPHRRRSTDAETRSRSRAEAPS 187
>LOC_Os02g08010:12002.t00697:unspliced-genomic calcium-transporting ATPase 10, plasma membrane-type, putative,| expressed Length = 12947 Score = 31.8 bits (63), Expect = 8.8 Identities = 10/21 (47%), Positives = 16/21 (76%) Frame = +1 / +3 Query: 964 THNNLLHNVAFLADILIYNNC 1026 +HN+LLHN+ L+DI + +C Sbjct: 3198 SHNSLLHNILLLSDISLRTHC 3260
>LOC_Os08g01324:12008.t04339:unspliced-genomic expressed protein| Length = 8067 Score = 24.9 bits (48), Expect(2) = 9.8 Identities = 10/20 (50%), Positives = 12/20 (60%) Frame = +2 / -1 Query: 806 ACCKRTAISSRLLVLGVLQP 865 ACC+R ISS L +L P Sbjct: 7584 ACCRRRRISSSTTCLPLLAP 7525 Score = 23.5 bits (45), Expect(2) = 9.8 Identities = 8/18 (44%), Positives = 12/18 (66%) Frame = +2 / -1 Query: 773 S*CRLWRWSPMACCKRTA 826 +*CRLWR P + + T+ Sbjct: 7704 T*CRLWRAPPSSTARATS 7651 Database: tigr.seq.out Posted date: Jul 20, 2007 8:58 AM Number of letters in database: 166,841,660 Number of sequences in database: 56,278 Lambda K H 0.318 0.134 0.401 Matrix: BLOSUM62 Number of Sequences: 56278 Number of Hits to DB: 425,614,225 Number of extensions: 6852851 Number of successful extensions: 24645 Number of sequences better than 10.0: 15 Length of query: 353 Length of database: 55,613,886 Length adjustment: 50 Effective length of query: 303 Effective length of database: 52,799,986 Effective search space: 15998395758 Effective search space used: 15998395758 Neighboring words threshold: 13 Window for multiple hits: 40 X1: 16 ( 7.3 bits)
