ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf17c22 |
|---|---|
| Clone Library Name | barley_pub |
>Q5E9F6:VPS72_BOVIN Vacuolar protein sorting-associated protein 72 homolog - Bos taurus| (Bovine) Length = 364 Score = 53.1 bits (126), Expect = 2e-06 Identities = 30/67 (44%), Positives = 39/67 (58%), Gaps = 1/67 (1%) Frame = +1 Query: 178 SRDGESRLEFINGASFGSELCTTSTP-YPEKSVCVVTGLPAKYRDPKTGLPYATMAAFKI 354 +R + + F + A+F TP P + VC VT PA YRDP T +PYAT AFKI Sbjct: 259 ARCSRTFITFSDDATFEEWFPQGRTPKIPVREVCPVTHRPALYRDPVTDIPYATARAFKI 318 Query: 355 IRESFLK 375 IRE++ K Sbjct: 319 IREAYKK 325
>Q5R5V9:VPS72_PONPY Vacuolar protein sorting-associated protein 72 homolog - Pongo| pygmaeus (Orangutan) Length = 364 Score = 51.6 bits (122), Expect = 5e-06 Identities = 24/39 (61%), Positives = 28/39 (71%) Frame = +1 Query: 259 PEKSVCVVTGLPAKYRDPKTGLPYATMAAFKIIRESFLK 375 P + VC VT PA YRDP T +PYAT AFKIIRE++ K Sbjct: 287 PVREVCPVTHRPALYRDPVTDIPYATARAFKIIREAYKK 325
>Q62481:VPS72_MOUSE Vacuolar protein sorting-associated protein 72 homolog - Mus| musculus (Mouse) Length = 368 Score = 51.6 bits (122), Expect = 5e-06 Identities = 24/39 (61%), Positives = 28/39 (71%) Frame = +1 Query: 259 PEKSVCVVTGLPAKYRDPKTGLPYATMAAFKIIRESFLK 375 P + VC VT PA YRDP T +PYAT AFKIIRE++ K Sbjct: 291 PVREVCPVTHRPALYRDPVTDIPYATARAFKIIREAYKK 329
>Q15906:VPS72_HUMAN Vacuolar protein sorting-associated protein 72 homolog - Homo| sapiens (Human) Length = 364 Score = 51.6 bits (122), Expect = 5e-06 Identities = 24/39 (61%), Positives = 28/39 (71%) Frame = +1 Query: 259 PEKSVCVVTGLPAKYRDPKTGLPYATMAAFKIIRESFLK 375 P + VC VT PA YRDP T +PYAT AFKIIRE++ K Sbjct: 287 PVREVCPVTHRPALYRDPVTDIPYATARAFKIIREAYKK 325
>Q9VKM6:VPS72_DROME Vacuolar protein sorting-associated protein 72 homolog - Drosophila| melanogaster (Fruit fly) Length = 351 Score = 48.9 bits (115), Expect = 3e-05 Identities = 40/145 (27%), Positives = 58/145 (40%), Gaps = 27/145 (18%) Frame = +1 Query: 16 EEKRMTQEEMLLEAAETEIMNMRNXXXXXXXXXXXXXXXXXXXXXYEGPTLRFHSRD--- 186 E+ TQEE+L EA TE N ++ + GPT+R+HS Sbjct: 165 EDYMPTQEELLEEAKITEEENTKSLEKFQKMELEKKKSRPTKRT-FSGPTIRYHSLTMPA 223 Query: 187 ------------------GESRLEFI------NGASFGSELCTTSTPYPEKSVCVVTGLP 294 G+ F+ N F S + P +C +T LP Sbjct: 224 MRKPTRGANPAVDSKDLAGKCERTFVTIENDFNDKVFQSLFRHKAPPKASNGICPITRLP 283 Query: 295 AKYRDPKTGLPYATMAAFKIIRESF 369 A+Y DP T PY ++ AFKI+RE++ Sbjct: 284 ARYFDPITQQPYYSIQAFKILREAY 308
>Q6GNJ8:VPS72_XENLA Vacuolar protein sorting-associated protein 72 homolog - Xenopus| laevis (African clawed frog) Length = 353 Score = 47.4 bits (111), Expect = 1e-04 Identities = 51/198 (25%), Positives = 78/198 (39%), Gaps = 36/198 (18%) Frame = +1 Query: 1 KSKEGE--EKRMTQEEMLLEAAETEIMNMRNXXXXXXXXXXXXXXXXXXXXXYEGPTLRF 174 K K+G ++ +TQEE+L EA TE +N+R+ GPT+R+ Sbjct: 155 KKKKGPHLDRPLTQEELLEEAKITEEINIRSLENYERLEADRKKQVHKKRRC-AGPTIRY 213 Query: 175 HS--------------------------------RDGESRLEFINGASFGSELCTTST-P 255 HS + S + F + +F + Sbjct: 214 HSMVMPLITELRMKEENVDVEGLDHEQTDRTHAGKCSRSFITFSDDETFERFFPRSKRGK 273 Query: 256 YPEKSVCVVTGLPAKYRDPKTGLPYATMAAFKIIRESFLKEEPDKKRPNMSNMGELFESV 435 + + VC VT PA YRDP T +PY AFKIIR+++ K PN + + S Sbjct: 274 FSVRDVCPVTHKPALYRDPITDIPYYNSKAFKIIRDAYKKYITTHGLPNAAMATTMGPSA 333 Query: 436 -AGEHSTPKKKRIEGRSP 486 A + +T +K I+ P Sbjct: 334 DAAQRNTRQKIIIKQSVP 351
>Q03388:VPS72_YEAST Vacuolar protein sorting-associated protein 72 - Saccharomyces| cerevisiae (Baker's yeast) Length = 795 Score = 37.7 bits (86), Expect = 0.081 Identities = 20/51 (39%), Positives = 31/51 (60%), Gaps = 5/51 (9%) Frame = +1 Query: 274 CVVTGLPAKYRDPKTGLPYATMAAFKI---IRESFLKEE--PDKKRPNMSN 411 C++T +Y DP+TG+PY+ + A+KI I++ KEE D KR +N Sbjct: 710 CLITNKECQYFDPRTGVPYSDVEAYKIIQRIQDPISKEEGRSDIKRDETTN 760
>Q5REK3:MPPB_PONPY Mitochondrial-processing peptidase subunit beta, mitochondrial| precursor - Pongo pygmaeus (Orangutan) Length = 489 Score = 33.5 bits (75), Expect = 1.5 Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 2/66 (3%) Frame = +1 Query: 151 YEGPTLRFHSRDGESRLEFINGASF--GSELCTTSTPYPEKSVCVVTGLPAKYRDPKTGL 324 Y+GP + + G S E ++ A F G LCT P C TG + RD K L Sbjct: 234 YKGPRIVLAAAGGVSHDELLDLAKFHFGDSLCTHKGEIPALPPCKFTGSEIRVRDDKMPL 293 Query: 325 PYATMA 342 + +A Sbjct: 294 AHLAIA 299
>O75439:MPPB_HUMAN Mitochondrial-processing peptidase subunit beta, mitochondrial| precursor - Homo sapiens (Human) Length = 489 Score = 33.5 bits (75), Expect = 1.5 Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 2/66 (3%) Frame = +1 Query: 151 YEGPTLRFHSRDGESRLEFINGASF--GSELCTTSTPYPEKSVCVVTGLPAKYRDPKTGL 324 Y+GP + + G S E ++ A F G LCT P C TG + RD K L Sbjct: 234 YKGPRIVLAAAGGVSHDELLDLAKFHFGDSLCTHKGEIPALPPCKFTGSEIRVRDDKMPL 293 Query: 325 PYATMA 342 + +A Sbjct: 294 AHLAIA 299
>P40596:HYPF_AZOVI Carbamoyltransferase hypF - Azotobacter vinelandii| Length = 776 Score = 31.6 bits (70), Expect = 5.8 Identities = 17/53 (32%), Positives = 29/53 (54%) Frame = +1 Query: 397 PNMSNMGELFESVAGEHSTPKKKRIEGRSPISVDLRHGGRFRRIPALDVMDED 555 P S+ G LF++ AG ++R E + + ++ R G R+PAL +D+D Sbjct: 614 PPSSSAGRLFDAAAGLLGLGGRQRYEAEAALRLESRVVGLPERVPALWRIDDD 666 Database: uniprot_sprot.fasta.out Posted date: Jul 19, 2007 5:58 PM Number of letters in database: 100,686,439 Number of sequences in database: 274,295 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 274295 Number of Hits to DB: 176,119,430 Number of extensions: 3681528 Number of successful extensions: 8404 Number of sequences better than 10.0: 10 Number of HSP's gapped: 8402 Number of HSP's successfully gapped: 10 Length of query: 353 Length of database: 100,686,439 Length adjustment: 114 Effective length of query: 239 Effective length of database: 69,416,809 Effective search space: 16590617351 Effective search space used: 16590617351 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
