| Clone Name | FLbaf17c22 |
|---|---|
| Clone Library Name | barley_pub |
>emb|AJ300143.1|HVU300143 Hordeum vulgare partial mRNA for stress responsive gene protein 6 srg6 gene), cultivar Georgie Length = 1340 Score = 1937 bits (977), Expect = 0.0 Identities = 999/1005 (99%), Gaps = 1/1005 (0%) Strand = Plus / Plus Query: 1 aagagtaaagagggagaagaaaaacgcatgacacaagaagagatgctcttggaagcagct 60 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 327 aagagaaaagagggagaagaaaaacgcatgacacaagaagagatgctcttggaagcagct 386 Query: 61 gaaactgagatcatgaacatgagaaatcttgaacgtgttctggcaagagaggaggaggtg 120 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct: 387 gaaactgagatcatgaacatgagaaatcttgaacgtgttctggcaagagagggggaggtg 446 Query: 121 aagaaaaaagctgttgttcagaaagctgtctatgagggtcctacacttcgatttcactct 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 447 aagaaaaaagctgttgttcagaaagctgtctatgagggtcctacacttcgatttcactct 506 Query: 181 agggatggggaatcacgtctggaattcattaatggggcatcatttgggtctgaactttgt 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 507 agggatggggaatcacgtctggaattcattaatggggcatcatttgggtctgaactttgt 566 Query: 241 acaacttcaactccttatccggagaaatctgtttgtgttgtaacaggacttcctgccaaa 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 567 acaacttcaactccttatccggagaaatctgtttgtgttgtaacaggacttcctgccaaa 626 Query: 301 taccgtgatccaaagacaggattaccttatgcaacaatggcagcgtttaagatcatccga 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 627 taccgtgatccaaagacaggattaccttatgcaacaatggcagcgtttaagatcatccga 686 Query: 361 gagagtttcctgaaagaggagccggataagaagaggcccaacatgtcaaatatgggagaa 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 687 gagagtttcctgaaagaggagccggataagaagaggcccaacatgtcaaatatgggagaa 746 Query: 421 ctctttgaatcagtagctggcgaacattctacgcctaagaagaaaagaatcgagggaaga 480 ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 747 ctcttggaatcagtagctggcgaacattctacgcctaagaagaatagaatcgagggaaga 806 Query: 481 tcaccaatatcagtagacctaaggcacggtggacgcttcagacgaatacctgctcttgat 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 807 tcaccaatatcagtagacctaaggcacggtggacgcttcagacgaatacctgctcttgat 866 Query: 541 gtgatggacgaggactgatgttctctgacagtgtggttgcataggttgccatgttactga 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 867 gtgatggacgaggactgatgttctctgacagtgtggttgcataggttgccatgttactga 926 Query: 601 ggacagatctgatggcatggttgcatatgatgccatgttagcatgacttgacagagatct 660 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 927 ggacagatctgatggcatggttgcatatgatgccatgttagcatgacttgacagagatct 986 Query: 661 ctggcggtgtggttgcatatgattagcatggggactggccggagatctcccaacagcgtg 720 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 987 ctggaggtgtggttgcatatgattagcatggggactggccggagatctcccaacagcgtg 1046 Query: 721 gttgcttaagatgccttgttagcattaggaacagtacagtgacatactatgttcttgatg 780 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1047 gttgcttaagatgccttgttagcattaggaacagtacagtgacatactatgttcttgatg 1106 Query: 781 ccgcttgtggagatggtcgccaatggcatgttgtaaacgaac-tgctatcagttcacggc 839 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 1107 ccgcttgtggagatggtcgccaatggcatgttgtaaacgaacttgctatcagttcacggc 1166 Query: 840 ttcttgtgttaggtgtgcttcaaccgtagtcgtagggactgttcaacatagcctcagcat 899 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1167 ttcttgtgttaggtgtgcttcaaccgtagtcgtagggactgttcaacatagcctcagcat 1226 Query: 900 tgcatcctgacatctaatcatggtattcgtttccgtgtcattttgacattgagcttgatt 959 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1227 tgcatcctgacatctaatcatggtattcgtttccgtgtcattttgacattgagcttgatt 1286 Query: 960 tttcactcacaataacttgttgcacaatgtggctttccttgccga 1004 ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1287 tttcactcacaataacttgttgcacaatgtggctttccttgccga 1331
>emb|AJ300145.1|HVU300145 Hordeum vulgare mRNA for for stress responsive gene protein 6(srg6 gene), cultivar Morex Length = 1584 Score = 1893 bits (955), Expect = 0.0 Identities = 992/1003 (98%), Gaps = 1/1003 (0%) Strand = Plus / Plus Query: 1 aagagtaaagagggagaagaaaaacgcatgacacaagaagagatgctcttggaagcagct 60 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 583 aagagaaaagagggagaagaaaaacgcatgacacaagaagagatgctcttggaagcagct 642 Query: 61 gaaactgagatcatgaacatgagaaatcttgaacgtgttctggcaagagaggaggaggtg 120 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct: 643 gaaactgagatcatgaacatgagaaatcttgaacgtgtactggcaagagaggaggaggtg 702 Query: 121 aagaaaaaagctgttgttcagaaagctgtctatgagggtcctacacttcgatttcactct 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 703 aagaaaaaagctgttgttcagaaagctgtctatgagggtcctacacttcgatttcactct 762 Query: 181 agggatggggaatcacgtctggaattcattaatggggcatcatttgggtctgaactttgt 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 763 agggatggggaatcacgtctggaattcattaatggggcatcatttgggtctgaactttgt 822 Query: 241 acaacttcaactccttatccggagaaatctgtttgtgttgtaacaggacttcctgccaaa 300 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 823 acaacttcaactccttatccggagaaatctgtttgtgttgtaacaggacttcctgccaag 882 Query: 301 taccgtgatccaaagacaggattaccttatgcaacaatggcagcgtttaagatcatccga 360 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 883 taccgtgatccaaagacgggattaccttatgcaacaatggcagcgtttaagatcatccga 942 Query: 361 gagagtttcctgaaagaggagccggataagaagaggcccaacatgtcaaatatgggagaa 420 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 943 gagaggttcctgaaagaggagccggataagaagaggcccaacatgtcaaatatgggagaa 1002 Query: 421 ctctttgaatcagtagctggcgaacattctacgcctaagaagaaaagaatcgagggaaga 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1003 ctctttgaatcagtagctggcgaacattctacgcctaagaagaaaagaatcgagggaaga 1062 Query: 481 tcaccaatatcagtagacctaaggcacggtggacgcttcagacgaatacctgctcttgat 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1063 tcaccaatatcagtagacctaaggcacggtggacgcttcagacgaatacctgctcttgat 1122 Query: 541 gtgatggacgaggactgatgttctctgacagtgtggttgcataggttgccatgttactga 600 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 1123 gtgatggacgaggactgatgttctctgacagtgtggttgcataggttgccatgttaccga 1182 Query: 601 ggacagatctgatggcatggttgcatatgatgccatgttagcatgacttgacagagatct 660 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1183 ggacagatctgatggcatggttgcatatgatgccatgttagcatgacttgacagagatct 1242 Query: 661 ctggcggtgtggttgcatatgattagcatggggactggccggagatctcccaacagcgtg 720 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1243 ctggcggtgtggttgcatatgattagcatggggactggccggagatctcccaacagcgtg 1302 Query: 721 gttgcttaagatgccttgttagcattaggaacagtacagtgacatactatgttcttgatg 780 |||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct: 1303 gttgcttaagatgccttgttagcattaggagcagtacagtgacacactatgttcttgatg 1362 Query: 781 ccgcttgtggagatggtcgccaatggcatgttgtaaacgaactgctatcagttcacggct 840 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1363 ccgcttgtggagatggtcgccaatggcatgttgtaaacgaactgctatcagttcacggct 1422 Query: 841 tcttgtgttaggtgtgcttcaaccgtagtcgtagggactgttcaacatagcctcagcatt 900 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1423 tcttgtgttaggtgtgcttcaaccgtagtcgtagggactgttcaacatagcctcagcatt 1482 Query: 901 gcatcctgacatctaatcatggtattcgtttccgtgtcattttgacattgagcttgattt 960 ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| || Sbjct: 1483 gcatcctgacatctaatcatggtatccgtttccgtgtcattttgacattgagcttga-tt 1541 Query: 961 ttcactcacaataacttgttgcacaatgtggctttccttgccg 1003 | ||||||||||||||||||||||||||||||||||||||||| Sbjct: 1542 tccactcacaataacttgttgcacaatgtggctttccttgccg 1584
>emb|AJ300144.1|HVU300144 Hordeum vulgare srg6 gene for stress responsive gene protein 6, exons 1-11, cultivar Morex Length = 4197 Score = 1277 bits (644), Expect = 0.0 Identities = 666/672 (99%), Gaps = 1/672 (0%) Strand = Plus / Plus Query: 364 agtttcctgaaagaggagccggataagaagaggcccaacatgtcaaatatgggagaactc 423 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3293 agtttcctgaaagaggagccggataagaagaggcccaacatgtcaaatatgggagaactc 3352 Query: 424 tttgaatcagtagctggcgaacattctacgcctaagaagaaaagaatcgagggaagatca 483 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3353 tttgaatcagtagctggcgaacattctacgcctaagaagaaaagaatcgagggaagatca 3412 Query: 484 ccaatatcagtagacctaaggcacggtggacgcttcagacgaatacctgctcttgatgtg 543 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3413 ccaatatcagtagacctaaggcacggtggacgcttcagacgaatacctgctcttgatgtg 3472 Query: 544 atggacgaggactgatgttctctgacagtgtggttgcataggttgccatgttactgagga 603 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 3473 atggacgaggactgatgttctctgacagtgtggttgcataggttgccatgttaccgagga 3532 Query: 604 cagatctgatggcatggttgcatatgatgccatgttagcatgacttgacagagatctctg 663 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3533 cagatctgatggcatggttgcatatgatgccatgttagcatgacttgacagagatctctg 3592 Query: 664 gcggtgtggttgcatatgattagcatggggactggccggagatctcccaacagcgtggtt 723 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3593 gcggtgtggttgcatatgattagcatggggactggccggagatctcccaacagcgtggtt 3652 Query: 724 gcttaagatgccttgttagcattaggaacagtacagtgacatactatgttcttgatgccg 783 ||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| Sbjct: 3653 gcttaagatgccttgttagcattaggagcagtacagtgacacactatgttcttgatgccg 3712 Query: 784 cttgtggagatggtcgccaatggcatgttgtaaacgaactgctatcagttcacggcttct 843 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3713 cttgtggagatggtcgccaatggcatgttgtaaacgaactgctatcagttcacggcttct 3772 Query: 844 tgtgttaggtgtgcttcaaccgtagtcgtagggactgttcaacatagcctcagcattgca 903 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3773 tgtgttaggtgtgcttcaaccgtagtcgtagggactgttcaacatagcctcagcattgca 3832 Query: 904 tcctgacatctaatcatggtattcgtttccgtgtcattttgacattgagcttgatttttc 963 |||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| | Sbjct: 3833 tcctgacatctaatcatggtatccgtttccgtgtcattttgacattgagcttga-tttcc 3891 Query: 964 actcacaataacttgttgcacaatgtggctttccttgccgacattttgatatataataac 1023 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3892 actcacaataacttgttgcacaatgtggctttccttgccgacattttgatatataataac 3951 Query: 1024 tgcacctcaggc 1035 |||||||||||| Sbjct: 3952 tgcacctcaggc 3963 Score = 234 bits (118), Expect = 5e-58 Identities = 121/122 (99%) Strand = Plus / Plus Query: 67 gagatcatgaacatgagaaatcttgaacgtgttctggcaagagaggaggaggtgaagaaa 126 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 2164 gagatcatgaacatgagaaatcttgaacgtgtactggcaagagaggaggaggtgaagaaa 2223 Query: 127 aaagctgttgttcagaaagctgtctatgagggtcctacacttcgatttcactctagggat 186 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2224 aaagctgttgttcagaaagctgtctatgagggtcctacacttcgatttcactctagggat 2283 Query: 187 gg 188 || Sbjct: 2284 gg 2285 Score = 139 bits (70), Expect = 2e-29 Identities = 70/70 (100%) Strand = Plus / Plus Query: 187 ggggaatcacgtctggaattcattaatggggcatcatttgggtctgaactttgtacaact 246 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2372 ggggaatcacgtctggaattcattaatggggcatcatttgggtctgaactttgtacaact 2431 Query: 247 tcaactcctt 256 |||||||||| Sbjct: 2432 tcaactcctt 2441 Score = 125 bits (63), Expect = 3e-25 Identities = 66/67 (98%) Strand = Plus / Plus Query: 1 aagagtaaagagggagaagaaaaacgcatgacacaagaagagatgctcttggaagcagct 60 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2011 aagagaaaagagggagaagaaaaacgcatgacacaagaagagatgctcttggaagcagct 2070 Query: 61 gaaactg 67 ||||||| Sbjct: 2071 gaaactg 2077 Score = 123 bits (62), Expect = 1e-24 Identities = 65/66 (98%) Strand = Plus / Plus Query: 300 ataccgtgatccaaagacaggattaccttatgcaacaatggcagcgtttaagatcatccg 359 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 3097 ataccgtgatccaaagacgggattaccttatgcaacaatggcagcgtttaagatcatccg 3156 Query: 360 agagag 365 |||||| Sbjct: 3157 agagag 3162 Score = 85.7 bits (43), Expect = 3e-13 Identities = 43/43 (100%) Strand = Plus / Plus Query: 257 atccggagaaatctgtttgtgttgtaacaggacttcctgccaa 299 ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2561 atccggagaaatctgtttgtgttgtaacaggacttcctgccaa 2603
>emb|AJ622894.1| Triticum durum mRNA for DRP1 protein (drg1 gene) Length = 1101 Score = 979 bits (494), Expect = 0.0 Identities = 542/558 (97%) Strand = Plus / Plus Query: 1 aagagtaaagagggagaagaaaaacgcatgacacaagaagagatgctcttggaagcagct 60 ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 544 aagagaaaagagggagaagaaaaacgtatgacacaagaagagatgctcttggaagcagct 603 Query: 61 gaaactgagatcatgaacatgagaaatcttgaacgtgttctggcaagagaggaggaggtg 120 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct: 604 gaaactgagatcatgaacatgagaaatcttgaacgtgtactggcaagagaggaggaggtg 663 Query: 121 aagaaaaaagctgttgttcagaaagctgtctatgagggtcctacacttcgatttcactct 180 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 664 aagaaaaaagctgttgttcagaaagctgtctatgagggtcctacacttcgatttcactcg 723 Query: 181 agggatggggaatcacgtctggaattcattaatggggcatcatttgggtctgaactttgt 240 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 724 agagatggggaatcacgtctggaattcattaatggggcatcatttgggtctgaactttgt 783 Query: 241 acaacttcaactccttatccggagaaatctgtttgtgttgtaacaggacttcctgccaaa 300 || ||||||||||||||||||||||||||||| || |||||||||||||||||||||||| Sbjct: 784 acgacttcaactccttatccggagaaatctgtgtgcgttgtaacaggacttcctgccaaa 843 Query: 301 taccgtgatccaaagacaggattaccttatgcaacaatggcagcgtttaagatcatccga 360 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 844 taccgtgatccaaagacaggattaccttatgcaacaatggcagcgtttaagatcatccgg 903 Query: 361 gagagtttcctgaaagaggagccggataagaagaggcccaacatgtcaaatatgggagaa 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 904 gagagtttcctgaaagaggagccggataagaagaggcccaacatgtcaaatatgggagaa 963 Query: 421 ctctttgaatcagtagctggcgaacattctacgcctaagaagaaaagaatcgagggaaga 480 ||||||||||||||||| ||||||||||||||||||||||||||||| |||||| |||| Sbjct: 964 ctctttgaatcagtagccggcgaacattctacgcctaagaagaaaaggatcgagtcaaga 1023 Query: 481 tcaccaatatcagtagacctaaggcacggtggacgcttcagacgaatacctgctcttgat 540 || |||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 1024 tcgccaatatcaggagacctaaggcacggcggacgcttcagacgaatacctgctcttgat 1083 Query: 541 gtgatggacgaggactga 558 |||||||||||||||||| Sbjct: 1084 gtgatggacgaggactga 1101
>ref|NM_001067711.1| Oryza sativa (japonica cultivar-group) Os08g0192400 (Os08g0192400) mRNA, complete cds Length = 1029 Score = 220 bits (111), Expect = 8e-54 Identities = 257/305 (84%), Gaps = 3/305 (0%) Strand = Plus / Plus Query: 257 atccggagaaatctgtttgtgttgtaacaggacttcctgccaaataccgtgatccaaaga 316 |||| ||||||||| |||||| |||||| ||||||||||||||||||||||| ||||||| Sbjct: 725 atccagagaaatctatttgtgctgtaactggacttcctgccaaataccgtgacccaaaga 784 Query: 317 caggattaccttatgcaacaatggcagcgtttaagatcatccgagagagtttcctgaaag 376 | || || || |||||||||| || ||| ||||| ||||||||||| ||||||||||||| Sbjct: 785 cggggttgccatatgcaacaaaggaagcatttaaaatcatccgagaaagtttcctgaaag 844 Query: 377 aggagccggataagaagaggcccaacatgtcaaatatgggagaactctttgaatcagtag 436 ||||| | || | ||||||||||||| || | ||||||||||| |||||||||||| || Sbjct: 845 aggaggctgacaggaagaggcccaacttggcgaatatgggagagctctttgaatcaataa 904 Query: 437 ctggcgaacattctacgcctaagaagaaaagaatcgagggaagatcacc---aatatcag 493 | || ||| | || || || ||||||| |||||| |||| ||||||||| || ||| Sbjct: 905 caggagaatactccacacccaagaagagaagaattgaggcaagatcacccagcatctcat 964 Query: 494 tagacctaaggcacggtggacgcttcagacgaatacctgctcttgatgtgatggacgagg 553 ||||| |||||| || |||||||| |||||||||||||||||||| || ||||||||| Sbjct: 965 cagaccaaaggcatggaggacgctttcgacgaatacctgctcttgatttgctggacgagg 1024 Query: 554 actga 558 ||||| Sbjct: 1025 actga 1029 Score = 212 bits (107), Expect = 2e-51 Identities = 143/155 (92%) Strand = Plus / Plus Query: 10 gagggagaagaaaaacgcatgacacaagaagagatgctcttggaagcagctgaaactgag 69 |||||||||||||| || |||||||||||||||||||| ||||||||||||||||| ||| Sbjct: 547 gagggagaagaaaagcgtatgacacaagaagagatgctgttggaagcagctgaaacagag 606 Query: 70 atcatgaacatgagaaatcttgaacgtgttctggcaagagaggaggaggtgaagaaaaaa 129 ||||| ||| ||||||||||||||||||| ||||||||||||||||||| ||||||||| Sbjct: 607 atcatcaacctgagaaatcttgaacgtgtattggcaagagaggaggaggttaagaaaaaa 666 Query: 130 gctgttgttcagaaagctgtctatgagggtcctac 164 || |||||||| |||||||| |||||||||||||| Sbjct: 667 gccgttgttcataaagctgtttatgagggtcctac 701
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8 Length = 28434780 Score = 131 bits (66), Expect = 6e-27 Identities = 90/98 (91%) Strand = Plus / Minus Query: 67 gagatcatgaacatgagaaatcttgaacgtgttctggcaagagaggaggaggtgaagaaa 126 |||||||| ||| ||||||||||||||||||| ||||||||||||||||||| |||||| Sbjct: 5396239 gagatcatcaacctgagaaatcttgaacgtgtattggcaagagaggaggaggttaagaaa 5396180 Query: 127 aaagctgttgttcagaaagctgtctatgagggtcctac 164 ||||| |||||||| |||||||| |||||||||||||| Sbjct: 5396179 aaagccgttgttcataaagctgtttatgagggtcctac 5396142 Score = 119 bits (60), Expect = 2e-23 Identities = 164/198 (82%), Gaps = 3/198 (1%) Strand = Plus / Minus Query: 364 agtttcctgaaagaggagccggataagaagaggcccaacatgtcaaatatgggagaactc 423 |||||||||||||||||| | || | ||||||||||||| || | ||||||||||| ||| Sbjct: 5395038 agtttcctgaaagaggaggctgacaggaagaggcccaacttggcgaatatgggagagctc 5394979 Query: 424 tttgaatcagtagctggcgaacattctacgcctaagaagaaaagaatcgagggaagatca 483 ||||||||| || | || ||| | || || || ||||||| |||||| |||| ||||||| Sbjct: 5394978 tttgaatcaataacaggagaatactccacacccaagaagagaagaattgaggcaagatca 5394919 Query: 484 cc---aatatcagtagacctaaggcacggtggacgcttcagacgaatacctgctcttgat 540 || || ||| ||||| |||||| || |||||||| |||||||||||||||||||| Sbjct: 5394918 cccagcatctcatcagaccaaaggcatggaggacgctttcgacgaatacctgctcttgat 5394859 Query: 541 gtgatggacgaggactga 558 || |||||||||||||| Sbjct: 5394858 ttgctggacgaggactga 5394841 Score = 87.7 bits (44), Expect = 8e-14 Identities = 53/56 (94%) Strand = Plus / Minus Query: 10 gagggagaagaaaaacgcatgacacaagaagagatgctcttggaagcagctgaaac 65 |||||||||||||| || |||||||||||||||||||| ||||||||||||||||| Sbjct: 5396710 gagggagaagaaaagcgtatgacacaagaagagatgctgttggaagcagctgaaac 5396655 Score = 75.8 bits (38), Expect = 3e-10 Identities = 62/70 (88%) Strand = Plus / Minus Query: 187 ggggaatcacgtctggaattcattaatggggcatcatttgggtctgaactttgtacaact 246 ||||| ||||| |||||||||| || ||||||||||||||||| |||||||||||||| Sbjct: 5395975 ggggagtcacgcttggaattcatcaacggggcatcatttgggtcagaactttgtacaacc 5395916 Query: 247 tcaactcctt 256 ||| |||||| Sbjct: 5395915 tcagctcctt 5395906 Score = 54.0 bits (27), Expect = 0.001 Identities = 54/63 (85%) Strand = Plus / Minus Query: 300 ataccgtgatccaaagacaggattaccttatgcaacaatggcagcgtttaagatcatccg 359 ||||||||| |||||||| || || || |||||||||| || ||| ||||| |||||||| Sbjct: 5395244 ataccgtgacccaaagacggggttgccatatgcaacaaaggaagcatttaaaatcatccg 5395185 Query: 360 aga 362 ||| Sbjct: 5395184 aga 5395182 Score = 54.0 bits (27), Expect = 0.001 Identities = 39/43 (90%) Strand = Plus / Minus Query: 257 atccggagaaatctgtttgtgttgtaacaggacttcctgccaa 299 |||| ||||||||| |||||| |||||| |||||||||||||| Sbjct: 5395769 atccagagaaatctatttgtgctgtaactggacttcctgccaa 5395727
>dbj|AP005441.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0056O06 Length = 151038 Score = 131 bits (66), Expect = 6e-27 Identities = 90/98 (91%) Strand = Plus / Minus Query: 67 gagatcatgaacatgagaaatcttgaacgtgttctggcaagagaggaggaggtgaagaaa 126 |||||||| ||| ||||||||||||||||||| ||||||||||||||||||| |||||| Sbjct: 66050 gagatcatcaacctgagaaatcttgaacgtgtattggcaagagaggaggaggttaagaaa 65991 Query: 127 aaagctgttgttcagaaagctgtctatgagggtcctac 164 ||||| |||||||| |||||||| |||||||||||||| Sbjct: 65990 aaagccgttgttcataaagctgtttatgagggtcctac 65953 Score = 119 bits (60), Expect = 2e-23 Identities = 164/198 (82%), Gaps = 3/198 (1%) Strand = Plus / Minus Query: 364 agtttcctgaaagaggagccggataagaagaggcccaacatgtcaaatatgggagaactc 423 |||||||||||||||||| | || | ||||||||||||| || | ||||||||||| ||| Sbjct: 64849 agtttcctgaaagaggaggctgacaggaagaggcccaacttggcgaatatgggagagctc 64790 Query: 424 tttgaatcagtagctggcgaacattctacgcctaagaagaaaagaatcgagggaagatca 483 ||||||||| || | || ||| | || || || ||||||| |||||| |||| ||||||| Sbjct: 64789 tttgaatcaataacaggagaatactccacacccaagaagagaagaattgaggcaagatca 64730 Query: 484 cc---aatatcagtagacctaaggcacggtggacgcttcagacgaatacctgctcttgat 540 || || ||| ||||| |||||| || |||||||| |||||||||||||||||||| Sbjct: 64729 cccagcatctcatcagaccaaaggcatggaggacgctttcgacgaatacctgctcttgat 64670 Query: 541 gtgatggacgaggactga 558 || |||||||||||||| Sbjct: 64669 ttgctggacgaggactga 64652 Score = 87.7 bits (44), Expect = 8e-14 Identities = 53/56 (94%) Strand = Plus / Minus Query: 10 gagggagaagaaaaacgcatgacacaagaagagatgctcttggaagcagctgaaac 65 |||||||||||||| || |||||||||||||||||||| ||||||||||||||||| Sbjct: 66521 gagggagaagaaaagcgtatgacacaagaagagatgctgttggaagcagctgaaac 66466 Score = 75.8 bits (38), Expect = 3e-10 Identities = 62/70 (88%) Strand = Plus / Minus Query: 187 ggggaatcacgtctggaattcattaatggggcatcatttgggtctgaactttgtacaact 246 ||||| ||||| |||||||||| || ||||||||||||||||| |||||||||||||| Sbjct: 65786 ggggagtcacgcttggaattcatcaacggggcatcatttgggtcagaactttgtacaacc 65727 Query: 247 tcaactcctt 256 ||| |||||| Sbjct: 65726 tcagctcctt 65717 Score = 54.0 bits (27), Expect = 0.001 Identities = 54/63 (85%) Strand = Plus / Minus Query: 300 ataccgtgatccaaagacaggattaccttatgcaacaatggcagcgtttaagatcatccg 359 ||||||||| |||||||| || || || |||||||||| || ||| ||||| |||||||| Sbjct: 65055 ataccgtgacccaaagacggggttgccatatgcaacaaaggaagcatttaaaatcatccg 64996 Query: 360 aga 362 ||| Sbjct: 64995 aga 64993 Score = 54.0 bits (27), Expect = 0.001 Identities = 39/43 (90%) Strand = Plus / Minus Query: 257 atccggagaaatctgtttgtgttgtaacaggacttcctgccaa 299 |||| ||||||||| |||||| |||||| |||||||||||||| Sbjct: 65580 atccagagaaatctatttgtgctgtaactggacttcctgccaa 65538
>emb|AL645664.8| Mouse DNA sequence from clone RP23-417P22 on chromosome 13 Contains the 5' end of the Gmds gene for GDP-mannose 4, 6-dehydratase, the 3' end of a novel gene and a CpG island, complete sequence Length = 193914 Score = 44.1 bits (22), Expect = 1.0 Identities = 22/22 (100%) Strand = Plus / Minus Query: 181 agggatggggaatcacgtctgg 202 |||||||||||||||||||||| Sbjct: 17718 agggatggggaatcacgtctgg 17697
>gb|CP000473.1| Solibacter usitatus Ellin6076, complete genome Length = 9965640 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 680 tgattagcatggggactggcc 700 ||||||||||||||||||||| Sbjct: 2307467 tgattagcatggggactggcc 2307447
>ref|XM_001148036.1| PREDICTED: Pan troglodytes hypothetical protein LOC745031 (LOC745031), mRNA Length = 1976 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 691 gggactggccggagatctccc 711 ||||||||||||||||||||| Sbjct: 1127 gggactggccggagatctccc 1147
>ref|XM_001086770.1| PREDICTED: Macaca mulatta hypothetical protein LOC698744 (LOC698744), mRNA Length = 1965 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 691 gggactggccggagatctccc 711 ||||||||||||||||||||| Sbjct: 1126 gggactggccggagatctccc 1146
>ref|NM_019018.1| Homo sapiens family with sequence similarity 105, member A (FAM105A), mRNA dbj|AK001989.1| Homo sapiens cDNA FLJ11127 fis, clone PLACE1006225 Length = 1925 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 691 gggactggccggagatctccc 711 ||||||||||||||||||||| Sbjct: 1079 gggactggccggagatctccc 1099
>gb|AC087257.13| Homo sapiens 12 BAC RP11-709A23 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 170116 Score = 42.1 bits (21), Expect = 4.0 Identities = 27/29 (93%) Strand = Plus / Minus Query: 102 ggcaagagaggaggaggtgaagaaaaaag 130 |||||||||| |||||| ||||||||||| Sbjct: 80941 ggcaagagagaaggaggagaagaaaaaag 80913
>gb|AC068992.31| Homo sapiens 8 BAC RP11-406I9 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 143611 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 455 ctaagaagaaaagaatcgagg 475 ||||||||||||||||||||| Sbjct: 101573 ctaagaagaaaagaatcgagg 101593
>gb|AC068794.25| Homo sapiens 12 BAC RP13-200J3 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 137043 Score = 42.1 bits (21), Expect = 4.0 Identities = 27/29 (93%) Strand = Plus / Minus Query: 102 ggcaagagaggaggaggtgaagaaaaaag 130 |||||||||| |||||| ||||||||||| Sbjct: 108905 ggcaagagagaaggaggagaagaaaaaag 108877
>emb|AL445286.12| Human DNA sequence from clone RP5-1005L2 on chromosome 20 Contains STSs, GSSs and CpG islands, complete sequence Length = 11118 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 96 tgttctggcaagagaggagga 116 ||||||||||||||||||||| Sbjct: 7261 tgttctggcaagagaggagga 7281
>dbj|AK222731.1| Homo sapiens mRNA for hypothetical protein FLJ11127 variant, clone: COL09660 Length = 1238 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 691 gggactggccggagatctccc 711 ||||||||||||||||||||| Sbjct: 1107 gggactggccggagatctccc 1127
>gb|AC093211.3| Homo sapiens chromosome 5 clone CTD-2020P3, complete sequence Length = 141894 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 691 gggactggccggagatctccc 711 ||||||||||||||||||||| Sbjct: 101270 gggactggccggagatctccc 101250
>gb|AC026749.5|AC026749 Homo sapiens chromosome 5 clone RP11-415K6, complete sequence Length = 184777 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 691 gggactggccggagatctccc 711 ||||||||||||||||||||| Sbjct: 117807 gggactggccggagatctccc 117787
>emb|AL663035.8| Mouse DNA sequence from clone RP23-432G17 on chromosome 11 Contains a novel pseudogene, complete sequence Length = 203319 Score = 42.1 bits (21), Expect = 4.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 39 agagatgctcttggaagcagctgaa 63 ||||||||||||| ||||||||||| Sbjct: 197865 agagatgctcttgtaagcagctgaa 197889
>emb|CR628312.1| Human DNA sequence from clone XX-NCIH2171_8J01, complete sequence Length = 112000 Score = 42.1 bits (21), Expect = 4.0 Identities = 27/29 (93%) Strand = Plus / Minus Query: 102 ggcaagagaggaggaggtgaagaaaaaag 130 |||||||||| |||||| ||||||||||| Sbjct: 104018 ggcaagagagaaggaggagaagaaaaaag 103990
>gb|AC010627.7| Homo sapiens chromosome 5 clone CTD-2165H16, complete sequence Length = 135322 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 691 gggactggccggagatctccc 711 ||||||||||||||||||||| Sbjct: 51851 gggactggccggagatctccc 51831
>gb|AC010491.4| Homo sapiens chromosome 5 clone CTD-2335I23, complete sequence Length = 142056 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 691 gggactggccggagatctccc 711 ||||||||||||||||||||| Sbjct: 2924 gggactggccggagatctccc 2944
>emb|CR591591.1| full-length cDNA clone CS0DI072YJ06 of Placenta Cot 25-normalized of Homo sapiens (human) Length = 1920 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 691 gggactggccggagatctccc 711 ||||||||||||||||||||| Sbjct: 1094 gggactggccggagatctccc 1114
>gb|BC011524.1| Homo sapiens family with sequence similarity 105, member A, mRNA (cDNA clone MGC:8793 IMAGE:3872837), complete cds Length = 1907 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 691 gggactggccggagatctccc 711 ||||||||||||||||||||| Sbjct: 1046 gggactggccggagatctccc 1066
>emb|AL672051.14| Mouse DNA sequence from clone RP23-332O3 on chromosome X, complete sequence Length = 163949 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 142 aaagctgtctatgagggtcct 162 ||||||||||||||||||||| Sbjct: 84055 aaagctgtctatgagggtcct 84075
>emb|AL512750.1|HSM802894 Homo sapiens mRNA; cDNA DKFZp667E105 (from clone DKFZp667E105) Length = 1228 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 691 gggactggccggagatctccc 711 ||||||||||||||||||||| Sbjct: 294 gggactggccggagatctccc 314
>emb|AL645466.12| Mouse DNA sequence from clone RP23-162P18 on chromosome X, complete sequence Length = 141324 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 53 aagcagctgaaactgagatca 73 ||||||||||||||||||||| Sbjct: 33841 aagcagctgaaactgagatca 33821 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 192,812,295 Number of extensions: 10107870 Number of successful extensions: 181687 Number of sequences better than 10.0: 28 Number of HSP's gapped: 181673 Number of HSP's successfully gapped: 47 Length of query: 1060 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 1037 Effective length of database: 18,503,978,556 Effective search space: 19188625762572 Effective search space used: 19188625762572 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)