ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf17c22
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|AJ300143.1|HVU300143 Hordeum vulgare partial mRNA for stress... 1937 0.0
2emb|AJ300145.1|HVU300145 Hordeum vulgare mRNA for for stress res... 1893 0.0
3emb|AJ300144.1|HVU300144 Hordeum vulgare srg6 gene for stress re... 1277 0.0
4emb|AJ622894.1| Triticum durum mRNA for DRP1 protein (drg1 gene) 979 0.0
5ref|NM_001067711.1| Oryza sativa (japonica cultivar-group) Os08g... 220 8e-54
6dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 131 6e-27
7dbj|AP005441.3| Oryza sativa (japonica cultivar-group) genomic D... 131 6e-27
8emb|AL645664.8| Mouse DNA sequence from clone RP23-417P22 on chr... 44 1.0
9gb|CP000473.1| Solibacter usitatus Ellin6076, complete genome 42 4.0
10ref|XM_001148036.1| PREDICTED: Pan troglodytes hypothetical prot... 42 4.0
11ref|XM_001086770.1| PREDICTED: Macaca mulatta hypothetical prote... 42 4.0
12ref|NM_019018.1| Homo sapiens family with sequence similarity 10... 42 4.0
13gb|AC087257.13| Homo sapiens 12 BAC RP11-709A23 (Roswell Park Ca... 42 4.0
14gb|AC068992.31| Homo sapiens 8 BAC RP11-406I9 (Roswell Park Canc... 42 4.0
15gb|AC068794.25| Homo sapiens 12 BAC RP13-200J3 (Roswell Park Can... 42 4.0
16emb|AL445286.12| Human DNA sequence from clone RP5-1005L2 on chr... 42 4.0
17dbj|AK222731.1| Homo sapiens mRNA for hypothetical protein FLJ11... 42 4.0
18gb|AC093211.3| Homo sapiens chromosome 5 clone CTD-2020P3, compl... 42 4.0
19gb|AC026749.5|AC026749 Homo sapiens chromosome 5 clone RP11-415K... 42 4.0
20emb|AL663035.8| Mouse DNA sequence from clone RP23-432G17 on chr... 42 4.0
21emb|CR628312.1| Human DNA sequence from clone XX-NCIH2171_8J01, ... 42 4.0
22gb|AC010627.7| Homo sapiens chromosome 5 clone CTD-2165H16, comp... 42 4.0
23gb|AC010491.4| Homo sapiens chromosome 5 clone CTD-2335I23, comp... 42 4.0
24emb|CR591591.1| full-length cDNA clone CS0DI072YJ06 of Placenta ... 42 4.0
25gb|BC011524.1| Homo sapiens family with sequence similarity 105,... 42 4.0
26emb|AL672051.14| Mouse DNA sequence from clone RP23-332O3 on chr... 42 4.0
27emb|AL512750.1|HSM802894 Homo sapiens mRNA; cDNA DKFZp667E105 (f... 42 4.0
28emb|AL645466.12| Mouse DNA sequence from clone RP23-162P18 on ch... 42 4.0

>emb|AJ300143.1|HVU300143 Hordeum vulgare partial mRNA for stress responsive gene protein 6
            srg6 gene), cultivar Georgie
          Length = 1340
 Score = 1937 bits (977), Expect = 0.0
 Identities = 999/1005 (99%), Gaps = 1/1005 (0%)
 Strand = Plus / Plus

                                                                        
Query: 1    aagagtaaagagggagaagaaaaacgcatgacacaagaagagatgctcttggaagcagct 60
            ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327  aagagaaaagagggagaagaaaaacgcatgacacaagaagagatgctcttggaagcagct 386

                                                                        
Query: 61   gaaactgagatcatgaacatgagaaatcttgaacgtgttctggcaagagaggaggaggtg 120
            |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 387  gaaactgagatcatgaacatgagaaatcttgaacgtgttctggcaagagagggggaggtg 446

                                                                        
Query: 121  aagaaaaaagctgttgttcagaaagctgtctatgagggtcctacacttcgatttcactct 180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447  aagaaaaaagctgttgttcagaaagctgtctatgagggtcctacacttcgatttcactct 506

                                                                        
Query: 181  agggatggggaatcacgtctggaattcattaatggggcatcatttgggtctgaactttgt 240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507  agggatggggaatcacgtctggaattcattaatggggcatcatttgggtctgaactttgt 566

                                                                        
Query: 241  acaacttcaactccttatccggagaaatctgtttgtgttgtaacaggacttcctgccaaa 300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567  acaacttcaactccttatccggagaaatctgtttgtgttgtaacaggacttcctgccaaa 626

                                                                        
Query: 301  taccgtgatccaaagacaggattaccttatgcaacaatggcagcgtttaagatcatccga 360
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627  taccgtgatccaaagacaggattaccttatgcaacaatggcagcgtttaagatcatccga 686

                                                                        
Query: 361  gagagtttcctgaaagaggagccggataagaagaggcccaacatgtcaaatatgggagaa 420
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687  gagagtttcctgaaagaggagccggataagaagaggcccaacatgtcaaatatgggagaa 746

                                                                        
Query: 421  ctctttgaatcagtagctggcgaacattctacgcctaagaagaaaagaatcgagggaaga 480
            ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 747  ctcttggaatcagtagctggcgaacattctacgcctaagaagaatagaatcgagggaaga 806

                                                                        
Query: 481  tcaccaatatcagtagacctaaggcacggtggacgcttcagacgaatacctgctcttgat 540
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 807  tcaccaatatcagtagacctaaggcacggtggacgcttcagacgaatacctgctcttgat 866

                                                                        
Query: 541  gtgatggacgaggactgatgttctctgacagtgtggttgcataggttgccatgttactga 600
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 867  gtgatggacgaggactgatgttctctgacagtgtggttgcataggttgccatgttactga 926

                                                                        
Query: 601  ggacagatctgatggcatggttgcatatgatgccatgttagcatgacttgacagagatct 660
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 927  ggacagatctgatggcatggttgcatatgatgccatgttagcatgacttgacagagatct 986

                                                                        
Query: 661  ctggcggtgtggttgcatatgattagcatggggactggccggagatctcccaacagcgtg 720
            |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 987  ctggaggtgtggttgcatatgattagcatggggactggccggagatctcccaacagcgtg 1046

                                                                        
Query: 721  gttgcttaagatgccttgttagcattaggaacagtacagtgacatactatgttcttgatg 780
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1047 gttgcttaagatgccttgttagcattaggaacagtacagtgacatactatgttcttgatg 1106

                                                                        
Query: 781  ccgcttgtggagatggtcgccaatggcatgttgtaaacgaac-tgctatcagttcacggc 839
            |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 1107 ccgcttgtggagatggtcgccaatggcatgttgtaaacgaacttgctatcagttcacggc 1166

                                                                        
Query: 840  ttcttgtgttaggtgtgcttcaaccgtagtcgtagggactgttcaacatagcctcagcat 899
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1167 ttcttgtgttaggtgtgcttcaaccgtagtcgtagggactgttcaacatagcctcagcat 1226

                                                                        
Query: 900  tgcatcctgacatctaatcatggtattcgtttccgtgtcattttgacattgagcttgatt 959
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1227 tgcatcctgacatctaatcatggtattcgtttccgtgtcattttgacattgagcttgatt 1286

                                                         
Query: 960  tttcactcacaataacttgttgcacaatgtggctttccttgccga 1004
            |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1287 tttcactcacaataacttgttgcacaatgtggctttccttgccga 1331



to top

>emb|AJ300145.1|HVU300145 Hordeum vulgare mRNA for for stress responsive gene protein 6(srg6
            gene), cultivar Morex
          Length = 1584

 Score = 1893 bits (955), Expect = 0.0
 Identities = 992/1003 (98%), Gaps = 1/1003 (0%)
 Strand = Plus / Plus

                                                                        
Query: 1    aagagtaaagagggagaagaaaaacgcatgacacaagaagagatgctcttggaagcagct 60
            ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583  aagagaaaagagggagaagaaaaacgcatgacacaagaagagatgctcttggaagcagct 642

                                                                        
Query: 61   gaaactgagatcatgaacatgagaaatcttgaacgtgttctggcaagagaggaggaggtg 120
            |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 643  gaaactgagatcatgaacatgagaaatcttgaacgtgtactggcaagagaggaggaggtg 702

                                                                        
Query: 121  aagaaaaaagctgttgttcagaaagctgtctatgagggtcctacacttcgatttcactct 180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 703  aagaaaaaagctgttgttcagaaagctgtctatgagggtcctacacttcgatttcactct 762

                                                                        
Query: 181  agggatggggaatcacgtctggaattcattaatggggcatcatttgggtctgaactttgt 240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 763  agggatggggaatcacgtctggaattcattaatggggcatcatttgggtctgaactttgt 822

                                                                        
Query: 241  acaacttcaactccttatccggagaaatctgtttgtgttgtaacaggacttcctgccaaa 300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 823  acaacttcaactccttatccggagaaatctgtttgtgttgtaacaggacttcctgccaag 882

                                                                        
Query: 301  taccgtgatccaaagacaggattaccttatgcaacaatggcagcgtttaagatcatccga 360
            ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 883  taccgtgatccaaagacgggattaccttatgcaacaatggcagcgtttaagatcatccga 942

                                                                        
Query: 361  gagagtttcctgaaagaggagccggataagaagaggcccaacatgtcaaatatgggagaa 420
            ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 943  gagaggttcctgaaagaggagccggataagaagaggcccaacatgtcaaatatgggagaa 1002

                                                                        
Query: 421  ctctttgaatcagtagctggcgaacattctacgcctaagaagaaaagaatcgagggaaga 480
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1003 ctctttgaatcagtagctggcgaacattctacgcctaagaagaaaagaatcgagggaaga 1062

                                                                        
Query: 481  tcaccaatatcagtagacctaaggcacggtggacgcttcagacgaatacctgctcttgat 540
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1063 tcaccaatatcagtagacctaaggcacggtggacgcttcagacgaatacctgctcttgat 1122

                                                                        
Query: 541  gtgatggacgaggactgatgttctctgacagtgtggttgcataggttgccatgttactga 600
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 1123 gtgatggacgaggactgatgttctctgacagtgtggttgcataggttgccatgttaccga 1182

                                                                        
Query: 601  ggacagatctgatggcatggttgcatatgatgccatgttagcatgacttgacagagatct 660
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1183 ggacagatctgatggcatggttgcatatgatgccatgttagcatgacttgacagagatct 1242

                                                                        
Query: 661  ctggcggtgtggttgcatatgattagcatggggactggccggagatctcccaacagcgtg 720
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1243 ctggcggtgtggttgcatatgattagcatggggactggccggagatctcccaacagcgtg 1302

                                                                        
Query: 721  gttgcttaagatgccttgttagcattaggaacagtacagtgacatactatgttcttgatg 780
            |||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct: 1303 gttgcttaagatgccttgttagcattaggagcagtacagtgacacactatgttcttgatg 1362

                                                                        
Query: 781  ccgcttgtggagatggtcgccaatggcatgttgtaaacgaactgctatcagttcacggct 840
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1363 ccgcttgtggagatggtcgccaatggcatgttgtaaacgaactgctatcagttcacggct 1422

                                                                        
Query: 841  tcttgtgttaggtgtgcttcaaccgtagtcgtagggactgttcaacatagcctcagcatt 900
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1423 tcttgtgttaggtgtgcttcaaccgtagtcgtagggactgttcaacatagcctcagcatt 1482

                                                                        
Query: 901  gcatcctgacatctaatcatggtattcgtttccgtgtcattttgacattgagcttgattt 960
            ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct: 1483 gcatcctgacatctaatcatggtatccgtttccgtgtcattttgacattgagcttga-tt 1541

                                                       
Query: 961  ttcactcacaataacttgttgcacaatgtggctttccttgccg 1003
            | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 1542 tccactcacaataacttgttgcacaatgtggctttccttgccg 1584



to top

>emb|AJ300144.1|HVU300144 Hordeum vulgare srg6 gene for stress responsive gene protein 6, exons
            1-11, cultivar Morex
          Length = 4197

 Score = 1277 bits (644), Expect = 0.0
 Identities = 666/672 (99%), Gaps = 1/672 (0%)
 Strand = Plus / Plus

                                                                        
Query: 364  agtttcctgaaagaggagccggataagaagaggcccaacatgtcaaatatgggagaactc 423
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3293 agtttcctgaaagaggagccggataagaagaggcccaacatgtcaaatatgggagaactc 3352

                                                                        
Query: 424  tttgaatcagtagctggcgaacattctacgcctaagaagaaaagaatcgagggaagatca 483
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3353 tttgaatcagtagctggcgaacattctacgcctaagaagaaaagaatcgagggaagatca 3412

                                                                        
Query: 484  ccaatatcagtagacctaaggcacggtggacgcttcagacgaatacctgctcttgatgtg 543
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3413 ccaatatcagtagacctaaggcacggtggacgcttcagacgaatacctgctcttgatgtg 3472

                                                                        
Query: 544  atggacgaggactgatgttctctgacagtgtggttgcataggttgccatgttactgagga 603
            |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 3473 atggacgaggactgatgttctctgacagtgtggttgcataggttgccatgttaccgagga 3532

                                                                        
Query: 604  cagatctgatggcatggttgcatatgatgccatgttagcatgacttgacagagatctctg 663
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3533 cagatctgatggcatggttgcatatgatgccatgttagcatgacttgacagagatctctg 3592

                                                                        
Query: 664  gcggtgtggttgcatatgattagcatggggactggccggagatctcccaacagcgtggtt 723
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3593 gcggtgtggttgcatatgattagcatggggactggccggagatctcccaacagcgtggtt 3652

                                                                        
Query: 724  gcttaagatgccttgttagcattaggaacagtacagtgacatactatgttcttgatgccg 783
            ||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct: 3653 gcttaagatgccttgttagcattaggagcagtacagtgacacactatgttcttgatgccg 3712

                                                                        
Query: 784  cttgtggagatggtcgccaatggcatgttgtaaacgaactgctatcagttcacggcttct 843
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3713 cttgtggagatggtcgccaatggcatgttgtaaacgaactgctatcagttcacggcttct 3772

                                                                        
Query: 844  tgtgttaggtgtgcttcaaccgtagtcgtagggactgttcaacatagcctcagcattgca 903
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3773 tgtgttaggtgtgcttcaaccgtagtcgtagggactgttcaacatagcctcagcattgca 3832

                                                                        
Query: 904  tcctgacatctaatcatggtattcgtttccgtgtcattttgacattgagcttgatttttc 963
            |||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| |
Sbjct: 3833 tcctgacatctaatcatggtatccgtttccgtgtcattttgacattgagcttga-tttcc 3891

                                                                        
Query: 964  actcacaataacttgttgcacaatgtggctttccttgccgacattttgatatataataac 1023
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3892 actcacaataacttgttgcacaatgtggctttccttgccgacattttgatatataataac 3951

                        
Query: 1024 tgcacctcaggc 1035
            ||||||||||||
Sbjct: 3952 tgcacctcaggc 3963



 Score =  234 bits (118), Expect = 5e-58
 Identities = 121/122 (99%)
 Strand = Plus / Plus

                                                                        
Query: 67   gagatcatgaacatgagaaatcttgaacgtgttctggcaagagaggaggaggtgaagaaa 126
            |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 2164 gagatcatgaacatgagaaatcttgaacgtgtactggcaagagaggaggaggtgaagaaa 2223

                                                                        
Query: 127  aaagctgttgttcagaaagctgtctatgagggtcctacacttcgatttcactctagggat 186
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2224 aaagctgttgttcagaaagctgtctatgagggtcctacacttcgatttcactctagggat 2283

              
Query: 187  gg 188
            ||
Sbjct: 2284 gg 2285



 Score =  139 bits (70), Expect = 2e-29
 Identities = 70/70 (100%)
 Strand = Plus / Plus

                                                                        
Query: 187  ggggaatcacgtctggaattcattaatggggcatcatttgggtctgaactttgtacaact 246
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2372 ggggaatcacgtctggaattcattaatggggcatcatttgggtctgaactttgtacaact 2431

                      
Query: 247  tcaactcctt 256
            ||||||||||
Sbjct: 2432 tcaactcctt 2441



 Score =  125 bits (63), Expect = 3e-25
 Identities = 66/67 (98%)
 Strand = Plus / Plus

                                                                        
Query: 1    aagagtaaagagggagaagaaaaacgcatgacacaagaagagatgctcttggaagcagct 60
            ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2011 aagagaaaagagggagaagaaaaacgcatgacacaagaagagatgctcttggaagcagct 2070

                   
Query: 61   gaaactg 67
            |||||||
Sbjct: 2071 gaaactg 2077



 Score =  123 bits (62), Expect = 1e-24
 Identities = 65/66 (98%)
 Strand = Plus / Plus

                                                                        
Query: 300  ataccgtgatccaaagacaggattaccttatgcaacaatggcagcgtttaagatcatccg 359
            |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 3097 ataccgtgatccaaagacgggattaccttatgcaacaatggcagcgtttaagatcatccg 3156

                  
Query: 360  agagag 365
            ||||||
Sbjct: 3157 agagag 3162



 Score = 85.7 bits (43), Expect = 3e-13
 Identities = 43/43 (100%)
 Strand = Plus / Plus

                                                       
Query: 257  atccggagaaatctgtttgtgttgtaacaggacttcctgccaa 299
            |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2561 atccggagaaatctgtttgtgttgtaacaggacttcctgccaa 2603



to top

>emb|AJ622894.1| Triticum durum mRNA for DRP1 protein (drg1 gene)
          Length = 1101

 Score =  979 bits (494), Expect = 0.0
 Identities = 542/558 (97%)
 Strand = Plus / Plus

                                                                        
Query: 1    aagagtaaagagggagaagaaaaacgcatgacacaagaagagatgctcttggaagcagct 60
            ||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 544  aagagaaaagagggagaagaaaaacgtatgacacaagaagagatgctcttggaagcagct 603

                                                                        
Query: 61   gaaactgagatcatgaacatgagaaatcttgaacgtgttctggcaagagaggaggaggtg 120
            |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 604  gaaactgagatcatgaacatgagaaatcttgaacgtgtactggcaagagaggaggaggtg 663

                                                                        
Query: 121  aagaaaaaagctgttgttcagaaagctgtctatgagggtcctacacttcgatttcactct 180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 664  aagaaaaaagctgttgttcagaaagctgtctatgagggtcctacacttcgatttcactcg 723

                                                                        
Query: 181  agggatggggaatcacgtctggaattcattaatggggcatcatttgggtctgaactttgt 240
            || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 724  agagatggggaatcacgtctggaattcattaatggggcatcatttgggtctgaactttgt 783

                                                                        
Query: 241  acaacttcaactccttatccggagaaatctgtttgtgttgtaacaggacttcctgccaaa 300
            || ||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct: 784  acgacttcaactccttatccggagaaatctgtgtgcgttgtaacaggacttcctgccaaa 843

                                                                        
Query: 301  taccgtgatccaaagacaggattaccttatgcaacaatggcagcgtttaagatcatccga 360
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 844  taccgtgatccaaagacaggattaccttatgcaacaatggcagcgtttaagatcatccgg 903

                                                                        
Query: 361  gagagtttcctgaaagaggagccggataagaagaggcccaacatgtcaaatatgggagaa 420
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 904  gagagtttcctgaaagaggagccggataagaagaggcccaacatgtcaaatatgggagaa 963

                                                                        
Query: 421  ctctttgaatcagtagctggcgaacattctacgcctaagaagaaaagaatcgagggaaga 480
            ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||  ||||
Sbjct: 964  ctctttgaatcagtagccggcgaacattctacgcctaagaagaaaaggatcgagtcaaga 1023

                                                                        
Query: 481  tcaccaatatcagtagacctaaggcacggtggacgcttcagacgaatacctgctcttgat 540
            || |||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 1024 tcgccaatatcaggagacctaaggcacggcggacgcttcagacgaatacctgctcttgat 1083

                              
Query: 541  gtgatggacgaggactga 558
            ||||||||||||||||||
Sbjct: 1084 gtgatggacgaggactga 1101



to top

>ref|NM_001067711.1| Oryza sativa (japonica cultivar-group) Os08g0192400 (Os08g0192400)
            mRNA, complete cds
          Length = 1029

 Score =  220 bits (111), Expect = 8e-54
 Identities = 257/305 (84%), Gaps = 3/305 (0%)
 Strand = Plus / Plus

                                                                        
Query: 257  atccggagaaatctgtttgtgttgtaacaggacttcctgccaaataccgtgatccaaaga 316
            |||| ||||||||| |||||| |||||| ||||||||||||||||||||||| |||||||
Sbjct: 725  atccagagaaatctatttgtgctgtaactggacttcctgccaaataccgtgacccaaaga 784

                                                                        
Query: 317  caggattaccttatgcaacaatggcagcgtttaagatcatccgagagagtttcctgaaag 376
            | || || || |||||||||| || ||| ||||| ||||||||||| |||||||||||||
Sbjct: 785  cggggttgccatatgcaacaaaggaagcatttaaaatcatccgagaaagtttcctgaaag 844

                                                                        
Query: 377  aggagccggataagaagaggcccaacatgtcaaatatgggagaactctttgaatcagtag 436
            ||||| | || | ||||||||||||| || | ||||||||||| |||||||||||| || 
Sbjct: 845  aggaggctgacaggaagaggcccaacttggcgaatatgggagagctctttgaatcaataa 904

                                                                        
Query: 437  ctggcgaacattctacgcctaagaagaaaagaatcgagggaagatcacc---aatatcag 493
            | || ||| | || || || ||||||| |||||| |||| |||||||||    || ||| 
Sbjct: 905  caggagaatactccacacccaagaagagaagaattgaggcaagatcacccagcatctcat 964

                                                                        
Query: 494  tagacctaaggcacggtggacgcttcagacgaatacctgctcttgatgtgatggacgagg 553
             ||||| |||||| || ||||||||  |||||||||||||||||||| || |||||||||
Sbjct: 965  cagaccaaaggcatggaggacgctttcgacgaatacctgctcttgatttgctggacgagg 1024

                 
Query: 554  actga 558
            |||||
Sbjct: 1025 actga 1029



 Score =  212 bits (107), Expect = 2e-51
 Identities = 143/155 (92%)
 Strand = Plus / Plus

                                                                       
Query: 10  gagggagaagaaaaacgcatgacacaagaagagatgctcttggaagcagctgaaactgag 69
           |||||||||||||| || |||||||||||||||||||| ||||||||||||||||| |||
Sbjct: 547 gagggagaagaaaagcgtatgacacaagaagagatgctgttggaagcagctgaaacagag 606

                                                                       
Query: 70  atcatgaacatgagaaatcttgaacgtgttctggcaagagaggaggaggtgaagaaaaaa 129
           ||||| ||| |||||||||||||||||||  ||||||||||||||||||| |||||||||
Sbjct: 607 atcatcaacctgagaaatcttgaacgtgtattggcaagagaggaggaggttaagaaaaaa 666

                                              
Query: 130 gctgttgttcagaaagctgtctatgagggtcctac 164
           || |||||||| |||||||| ||||||||||||||
Sbjct: 667 gccgttgttcataaagctgtttatgagggtcctac 701



to top

>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8
          Length = 28434780

 Score =  131 bits (66), Expect = 6e-27
 Identities = 90/98 (91%)
 Strand = Plus / Minus

                                                                           
Query: 67      gagatcatgaacatgagaaatcttgaacgtgttctggcaagagaggaggaggtgaagaaa 126
               |||||||| ||| |||||||||||||||||||  ||||||||||||||||||| ||||||
Sbjct: 5396239 gagatcatcaacctgagaaatcttgaacgtgtattggcaagagaggaggaggttaagaaa 5396180

                                                     
Query: 127     aaagctgttgttcagaaagctgtctatgagggtcctac 164
               ||||| |||||||| |||||||| ||||||||||||||
Sbjct: 5396179 aaagccgttgttcataaagctgtttatgagggtcctac 5396142



 Score =  119 bits (60), Expect = 2e-23
 Identities = 164/198 (82%), Gaps = 3/198 (1%)
 Strand = Plus / Minus

                                                                           
Query: 364     agtttcctgaaagaggagccggataagaagaggcccaacatgtcaaatatgggagaactc 423
               |||||||||||||||||| | || | ||||||||||||| || | ||||||||||| |||
Sbjct: 5395038 agtttcctgaaagaggaggctgacaggaagaggcccaacttggcgaatatgggagagctc 5394979

                                                                           
Query: 424     tttgaatcagtagctggcgaacattctacgcctaagaagaaaagaatcgagggaagatca 483
               ||||||||| || | || ||| | || || || ||||||| |||||| |||| |||||||
Sbjct: 5394978 tttgaatcaataacaggagaatactccacacccaagaagagaagaattgaggcaagatca 5394919

                                                                           
Query: 484     cc---aatatcagtagacctaaggcacggtggacgcttcagacgaatacctgctcttgat 540
               ||    || |||  ||||| |||||| || ||||||||  ||||||||||||||||||||
Sbjct: 5394918 cccagcatctcatcagaccaaaggcatggaggacgctttcgacgaatacctgctcttgat 5394859

                                 
Query: 541     gtgatggacgaggactga 558
                || ||||||||||||||
Sbjct: 5394858 ttgctggacgaggactga 5394841



 Score = 87.7 bits (44), Expect = 8e-14
 Identities = 53/56 (94%)
 Strand = Plus / Minus

                                                                       
Query: 10      gagggagaagaaaaacgcatgacacaagaagagatgctcttggaagcagctgaaac 65
               |||||||||||||| || |||||||||||||||||||| |||||||||||||||||
Sbjct: 5396710 gagggagaagaaaagcgtatgacacaagaagagatgctgttggaagcagctgaaac 5396655



 Score = 75.8 bits (38), Expect = 3e-10
 Identities = 62/70 (88%)
 Strand = Plus / Minus

                                                                           
Query: 187     ggggaatcacgtctggaattcattaatggggcatcatttgggtctgaactttgtacaact 246
               ||||| |||||  |||||||||| || ||||||||||||||||| |||||||||||||| 
Sbjct: 5395975 ggggagtcacgcttggaattcatcaacggggcatcatttgggtcagaactttgtacaacc 5395916

                         
Query: 247     tcaactcctt 256
               ||| ||||||
Sbjct: 5395915 tcagctcctt 5395906



 Score = 54.0 bits (27), Expect = 0.001
 Identities = 54/63 (85%)
 Strand = Plus / Minus

                                                                           
Query: 300     ataccgtgatccaaagacaggattaccttatgcaacaatggcagcgtttaagatcatccg 359
               ||||||||| |||||||| || || || |||||||||| || ||| ||||| ||||||||
Sbjct: 5395244 ataccgtgacccaaagacggggttgccatatgcaacaaaggaagcatttaaaatcatccg 5395185

                  
Query: 360     aga 362
               |||
Sbjct: 5395184 aga 5395182



 Score = 54.0 bits (27), Expect = 0.001
 Identities = 39/43 (90%)
 Strand = Plus / Minus

                                                          
Query: 257     atccggagaaatctgtttgtgttgtaacaggacttcctgccaa 299
               |||| ||||||||| |||||| |||||| ||||||||||||||
Sbjct: 5395769 atccagagaaatctatttgtgctgtaactggacttcctgccaa 5395727



to top

>dbj|AP005441.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OSJNBa0056O06
          Length = 151038

 Score =  131 bits (66), Expect = 6e-27
 Identities = 90/98 (91%)
 Strand = Plus / Minus

                                                                         
Query: 67    gagatcatgaacatgagaaatcttgaacgtgttctggcaagagaggaggaggtgaagaaa 126
             |||||||| ||| |||||||||||||||||||  ||||||||||||||||||| ||||||
Sbjct: 66050 gagatcatcaacctgagaaatcttgaacgtgtattggcaagagaggaggaggttaagaaa 65991

                                                   
Query: 127   aaagctgttgttcagaaagctgtctatgagggtcctac 164
             ||||| |||||||| |||||||| ||||||||||||||
Sbjct: 65990 aaagccgttgttcataaagctgtttatgagggtcctac 65953



 Score =  119 bits (60), Expect = 2e-23
 Identities = 164/198 (82%), Gaps = 3/198 (1%)
 Strand = Plus / Minus

                                                                         
Query: 364   agtttcctgaaagaggagccggataagaagaggcccaacatgtcaaatatgggagaactc 423
             |||||||||||||||||| | || | ||||||||||||| || | ||||||||||| |||
Sbjct: 64849 agtttcctgaaagaggaggctgacaggaagaggcccaacttggcgaatatgggagagctc 64790

                                                                         
Query: 424   tttgaatcagtagctggcgaacattctacgcctaagaagaaaagaatcgagggaagatca 483
             ||||||||| || | || ||| | || || || ||||||| |||||| |||| |||||||
Sbjct: 64789 tttgaatcaataacaggagaatactccacacccaagaagagaagaattgaggcaagatca 64730

                                                                         
Query: 484   cc---aatatcagtagacctaaggcacggtggacgcttcagacgaatacctgctcttgat 540
             ||    || |||  ||||| |||||| || ||||||||  ||||||||||||||||||||
Sbjct: 64729 cccagcatctcatcagaccaaaggcatggaggacgctttcgacgaatacctgctcttgat 64670

                               
Query: 541   gtgatggacgaggactga 558
              || ||||||||||||||
Sbjct: 64669 ttgctggacgaggactga 64652



 Score = 87.7 bits (44), Expect = 8e-14
 Identities = 53/56 (94%)
 Strand = Plus / Minus

                                                                     
Query: 10    gagggagaagaaaaacgcatgacacaagaagagatgctcttggaagcagctgaaac 65
             |||||||||||||| || |||||||||||||||||||| |||||||||||||||||
Sbjct: 66521 gagggagaagaaaagcgtatgacacaagaagagatgctgttggaagcagctgaaac 66466



 Score = 75.8 bits (38), Expect = 3e-10
 Identities = 62/70 (88%)
 Strand = Plus / Minus

                                                                         
Query: 187   ggggaatcacgtctggaattcattaatggggcatcatttgggtctgaactttgtacaact 246
             ||||| |||||  |||||||||| || ||||||||||||||||| |||||||||||||| 
Sbjct: 65786 ggggagtcacgcttggaattcatcaacggggcatcatttgggtcagaactttgtacaacc 65727

                       
Query: 247   tcaactcctt 256
             ||| ||||||
Sbjct: 65726 tcagctcctt 65717



 Score = 54.0 bits (27), Expect = 0.001
 Identities = 54/63 (85%)
 Strand = Plus / Minus

                                                                         
Query: 300   ataccgtgatccaaagacaggattaccttatgcaacaatggcagcgtttaagatcatccg 359
             ||||||||| |||||||| || || || |||||||||| || ||| ||||| ||||||||
Sbjct: 65055 ataccgtgacccaaagacggggttgccatatgcaacaaaggaagcatttaaaatcatccg 64996

                
Query: 360   aga 362
             |||
Sbjct: 64995 aga 64993



 Score = 54.0 bits (27), Expect = 0.001
 Identities = 39/43 (90%)
 Strand = Plus / Minus

                                                        
Query: 257   atccggagaaatctgtttgtgttgtaacaggacttcctgccaa 299
             |||| ||||||||| |||||| |||||| ||||||||||||||
Sbjct: 65580 atccagagaaatctatttgtgctgtaactggacttcctgccaa 65538



to top

>emb|AL645664.8| Mouse DNA sequence from clone RP23-417P22 on chromosome 13 Contains the
             5' end of the Gmds gene for GDP-mannose 4, 6-dehydratase,
             the 3' end of a novel gene and a CpG island, complete
             sequence
          Length = 193914

 Score = 44.1 bits (22), Expect = 1.0
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 181   agggatggggaatcacgtctgg 202
             ||||||||||||||||||||||
Sbjct: 17718 agggatggggaatcacgtctgg 17697



to top

>gb|CP000473.1| Solibacter usitatus Ellin6076, complete genome
          Length = 9965640

 Score = 42.1 bits (21), Expect = 4.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 680     tgattagcatggggactggcc 700
               |||||||||||||||||||||
Sbjct: 2307467 tgattagcatggggactggcc 2307447



to top

>ref|XM_001148036.1| PREDICTED: Pan troglodytes hypothetical protein LOC745031
            (LOC745031), mRNA
          Length = 1976

 Score = 42.1 bits (21), Expect = 4.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 691  gggactggccggagatctccc 711
            |||||||||||||||||||||
Sbjct: 1127 gggactggccggagatctccc 1147



to top

>ref|XM_001086770.1| PREDICTED: Macaca mulatta hypothetical protein LOC698744 (LOC698744),
            mRNA
          Length = 1965

 Score = 42.1 bits (21), Expect = 4.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 691  gggactggccggagatctccc 711
            |||||||||||||||||||||
Sbjct: 1126 gggactggccggagatctccc 1146



to top

>ref|NM_019018.1| Homo sapiens family with sequence similarity 105, member A (FAM105A),
            mRNA
 dbj|AK001989.1| Homo sapiens cDNA FLJ11127 fis, clone PLACE1006225
          Length = 1925

 Score = 42.1 bits (21), Expect = 4.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 691  gggactggccggagatctccc 711
            |||||||||||||||||||||
Sbjct: 1079 gggactggccggagatctccc 1099



to top

>gb|AC087257.13| Homo sapiens 12 BAC RP11-709A23 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 170116

 Score = 42.1 bits (21), Expect = 4.0
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 102   ggcaagagaggaggaggtgaagaaaaaag 130
             |||||||||| |||||| |||||||||||
Sbjct: 80941 ggcaagagagaaggaggagaagaaaaaag 80913



to top

>gb|AC068992.31| Homo sapiens 8 BAC RP11-406I9 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 143611

 Score = 42.1 bits (21), Expect = 4.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 455    ctaagaagaaaagaatcgagg 475
              |||||||||||||||||||||
Sbjct: 101573 ctaagaagaaaagaatcgagg 101593



to top

>gb|AC068794.25| Homo sapiens 12 BAC RP13-200J3 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 137043

 Score = 42.1 bits (21), Expect = 4.0
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 102    ggcaagagaggaggaggtgaagaaaaaag 130
              |||||||||| |||||| |||||||||||
Sbjct: 108905 ggcaagagagaaggaggagaagaaaaaag 108877



to top

>emb|AL445286.12| Human DNA sequence from clone RP5-1005L2 on chromosome 20 Contains
            STSs, GSSs and CpG islands, complete sequence
          Length = 11118

 Score = 42.1 bits (21), Expect = 4.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 96   tgttctggcaagagaggagga 116
            |||||||||||||||||||||
Sbjct: 7261 tgttctggcaagagaggagga 7281



to top

>dbj|AK222731.1| Homo sapiens mRNA for hypothetical protein FLJ11127 variant, clone:
            COL09660
          Length = 1238

 Score = 42.1 bits (21), Expect = 4.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 691  gggactggccggagatctccc 711
            |||||||||||||||||||||
Sbjct: 1107 gggactggccggagatctccc 1127



to top

>gb|AC093211.3| Homo sapiens chromosome 5 clone CTD-2020P3, complete sequence
          Length = 141894

 Score = 42.1 bits (21), Expect = 4.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 691    gggactggccggagatctccc 711
              |||||||||||||||||||||
Sbjct: 101270 gggactggccggagatctccc 101250



to top

>gb|AC026749.5|AC026749 Homo sapiens chromosome 5 clone RP11-415K6, complete sequence
          Length = 184777

 Score = 42.1 bits (21), Expect = 4.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 691    gggactggccggagatctccc 711
              |||||||||||||||||||||
Sbjct: 117807 gggactggccggagatctccc 117787



to top

>emb|AL663035.8| Mouse DNA sequence from clone RP23-432G17 on chromosome 11 Contains a
              novel pseudogene, complete sequence
          Length = 203319

 Score = 42.1 bits (21), Expect = 4.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 39     agagatgctcttggaagcagctgaa 63
              ||||||||||||| |||||||||||
Sbjct: 197865 agagatgctcttgtaagcagctgaa 197889



to top

>emb|CR628312.1| Human DNA sequence from clone XX-NCIH2171_8J01, complete sequence
          Length = 112000

 Score = 42.1 bits (21), Expect = 4.0
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 102    ggcaagagaggaggaggtgaagaaaaaag 130
              |||||||||| |||||| |||||||||||
Sbjct: 104018 ggcaagagagaaggaggagaagaaaaaag 103990



to top

>gb|AC010627.7| Homo sapiens chromosome 5 clone CTD-2165H16, complete sequence
          Length = 135322

 Score = 42.1 bits (21), Expect = 4.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 691   gggactggccggagatctccc 711
             |||||||||||||||||||||
Sbjct: 51851 gggactggccggagatctccc 51831



to top

>gb|AC010491.4| Homo sapiens chromosome 5 clone CTD-2335I23, complete sequence
          Length = 142056

 Score = 42.1 bits (21), Expect = 4.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 691  gggactggccggagatctccc 711
            |||||||||||||||||||||
Sbjct: 2924 gggactggccggagatctccc 2944



to top

>emb|CR591591.1| full-length cDNA clone CS0DI072YJ06 of Placenta Cot 25-normalized of
            Homo sapiens (human)
          Length = 1920

 Score = 42.1 bits (21), Expect = 4.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 691  gggactggccggagatctccc 711
            |||||||||||||||||||||
Sbjct: 1094 gggactggccggagatctccc 1114



to top

>gb|BC011524.1| Homo sapiens family with sequence similarity 105, member A, mRNA
            (cDNA clone MGC:8793 IMAGE:3872837), complete cds
          Length = 1907

 Score = 42.1 bits (21), Expect = 4.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 691  gggactggccggagatctccc 711
            |||||||||||||||||||||
Sbjct: 1046 gggactggccggagatctccc 1066



to top

>emb|AL672051.14| Mouse DNA sequence from clone RP23-332O3 on chromosome X, complete
             sequence
          Length = 163949

 Score = 42.1 bits (21), Expect = 4.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 142   aaagctgtctatgagggtcct 162
             |||||||||||||||||||||
Sbjct: 84055 aaagctgtctatgagggtcct 84075



to top

>emb|AL512750.1|HSM802894 Homo sapiens mRNA; cDNA DKFZp667E105 (from clone DKFZp667E105)
          Length = 1228

 Score = 42.1 bits (21), Expect = 4.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 691 gggactggccggagatctccc 711
           |||||||||||||||||||||
Sbjct: 294 gggactggccggagatctccc 314



to top

>emb|AL645466.12| Mouse DNA sequence from clone RP23-162P18 on chromosome X, complete
             sequence
          Length = 141324

 Score = 42.1 bits (21), Expect = 4.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 53    aagcagctgaaactgagatca 73
             |||||||||||||||||||||
Sbjct: 33841 aagcagctgaaactgagatca 33821


  Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
  GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
    Posted date:  Dec 3, 2006  5:45 PM
  Number of letters in database: 18,610,659,111
  Number of sequences in database:  4,638,285
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4638285
Number of Hits to DB: 192,812,295
Number of extensions: 10107870
Number of successful extensions: 181687
Number of sequences better than 10.0: 28
Number of HSP's gapped: 181673
Number of HSP's successfully gapped: 47
Length of query: 1060
Length of database: 18,610,659,111
Length adjustment: 23
Effective length of query: 1037
Effective length of database: 18,503,978,556
Effective search space: 19188625762572
Effective search space used: 19188625762572
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 14 (28.2 bits)
to top