ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf13p23 |
|---|---|
| Clone Library Name | barley_pub |
>LOC_Os01g41010:12001.t03623:unspliced-genomic MARD1, putative, expressed| Length = 2418 Score = 34.5 bits (69), Expect = 0.34 Identities = 15/36 (41%), Positives = 20/36 (55%) Frame = -2 / -2 Query: 268 CSQYNTVSLLNKRRSVLVLRVCHHKVVRDDQHEYED 161 C YNT SL ++RR + +LRV H K R + D Sbjct: 1703 CIYYNTGSLTDRRRCLSLLRVSHRKNNRSSSYPLPD 1596
>LOC_Os02g58340:12002.t05405:unspliced-genomic oligopeptidase A, putative, expressed| Length = 5699 Score = 33.6 bits (67), Expect = 0.64 Identities = 13/26 (50%), Positives = 16/26 (61%) Frame = +1 / +1 Query: 79 PRPPTDPHSGRQDV*RPRLGFLHQLP 156 PRPP PH+ R P L ++HQLP Sbjct: 337 PRPPRRPHAPRPPRTSPALPWIHQLP 414
>LOC_Os12g10340:12012.t00911:unspliced-genomic rust resistance-like protein RP1-3, putative, expressed| Length = 2111 Score = 32.7 bits (65), Expect = 1.2 Identities = 11/21 (52%), Positives = 14/21 (66%) Frame = -2 / +2 Query: 202 HHKVVRDDQHEYEDAQEVGEE 140 HH + D E+ED Q+VGEE Sbjct: 1127 HHAFINPDPQEFEDFQQVGEE 1189
>LOC_Os06g43190:12006.t04010:unspliced-genomic calcium-binding protein, putative, expressed| Length = 3537 Score = 32.7 bits (65), Expect = 1.2 Identities = 13/28 (46%), Positives = 17/28 (60%) Frame = -3 / -2 Query: 234 KGDQFSYFGSAITKWYAMTSTNMKMPRK 151 KG SY + ITKW + STN+ +P K Sbjct: 2159 KGSVDSYLRTVITKWA*LRSTNLPLPMK 2076
>LOC_Os08g21760:12008.t01964:unspliced-genomic RER1C protein, putative, expressed| Length = 6160 Score = 32.2 bits (64), Expect = 1.6 Identities = 12/22 (54%), Positives = 14/22 (63%) Frame = +1 / +1 Query: 154 PGHLHIRAGHRVPLCDGRPEVR 219 P HLH + HR+PL GRP R Sbjct: 340 PRHLHPQPPHRLPLAPGRPRGR 405
>LOC_Os04g14210:12004.t01240:unspliced-genomic hypothetical protein| Length = 1877 Score = 32.2 bits (64), Expect = 1.6 Identities = 12/22 (54%), Positives = 14/22 (63%) Frame = +1 / +1 Query: 154 PGHLHIRAGHRVPLCDGRPEVR 219 P HLH + HR+PL GRP R Sbjct: 142 PRHLHPQPPHRLPLAPGRPRGR 207
>LOC_Os06g30990:12006.t02801:unspliced-genomic retrotransposon protein, putative, unclassified, expressed| Length = 2835 Score = 31.8 bits (63), Expect = 2.3 Identities = 11/28 (39%), Positives = 17/28 (60%) Frame = -3 / -2 Query: 216 YFGSAITKWYAMTSTNMKMPRKLVKKPK 133 YF S+ T W++ N PR+++KK K Sbjct: 581 YFSSSNTAWHSGVQVNFPAPRRVLKKGK 498
>LOC_Os12g06710:12012.t00556:unspliced-genomic retrotransposon protein, putative, unclassified| Length = 3574 Score = 31.3 bits (62), Expect = 3.1 Identities = 11/32 (34%), Positives = 19/32 (59%) Frame = -3 / -3 Query: 216 YFGSAITKWYAMTSTNMKMPRKLVKKPKSWSS 121 YF S W++ N +PR+++KK K +S+ Sbjct: 1661 YFSSLNATWHSGVQLNFPVPRRVLKKGKPFSA 1566
>LOC_Os11g08900:12011.t00782:unspliced-genomic retrotransposon, putative, centromere-specific| Length = 1059 Score = 31.3 bits (62), Expect = 3.1 Identities = 13/26 (50%), Positives = 18/26 (69%) Frame = -2 / +2 Query: 238 NKRRSVLVLRVCHHKVVRDDQHEYED 161 N+RR +L + V HHKV RD++ Y D Sbjct: 326 NERRLLLHVHVQHHKVNRDEEIPYLD 403
>LOC_Os11g08720:12011.t00764:unspliced-genomic retrotransposon, putative, centromere-specific| Length = 1059 Score = 31.3 bits (62), Expect = 3.1 Identities = 13/26 (50%), Positives = 18/26 (69%) Frame = -2 / +2 Query: 238 NKRRSVLVLRVCHHKVVRDDQHEYED 161 N+RR +L + V HHKV RD++ Y D Sbjct: 326 NERRLLLHVHVQHHKVNRDEEIPYLD 403
>LOC_Os07g01070:12007.t00007:unspliced-genomic peptide transporter PTR2, putative, expressed| Length = 1921 Score = 31.3 bits (62), Expect = 3.1 Identities = 12/19 (63%), Positives = 13/19 (68%) Frame = +1 / +3 Query: 124 RPRLGFLHQLPGHLHIRAG 180 RPR LH LP HLH+ AG Sbjct: 1344 RPRHARLHLLPAHLHLLAG 1400
>LOC_Os03g64200:12003.t05631:unspliced-genomic ATPase, coupled to transmembrane movement of substances, putative,| expressed Length = 5162 Score = 30.9 bits (61), Expect = 4.3 Identities = 9/14 (64%), Positives = 11/14 (78%) Frame = +3 / -3 Query: 330 IWHCDLNHAKKKKK 371 +WHCDL +KKKK Sbjct: 96 LWHCDLQFGRKKKK 55
>LOC_Os01g43940:12001.t03906:unspliced-genomic oligopeptide transporter 4, putative| Length = 2268 Score = 30.9 bits (61), Expect = 4.3 Identities = 14/33 (42%), Positives = 16/33 (48%) Frame = +1 / -1 Query: 124 RPRLGFLHQLPGHLHIRAGHRVPLCDGRPEVRE 222 RP LH+ G H+R H VP RP V E Sbjct: 615 RPEQRHLHERAGPPHLRRLHHVPAHQPRPPVAE 517
>LOC_Os05g10630:12005.t00897:unspliced-genomic O-sialoglycoprotein endopeptidase, putative, expressed| Length = 5503 Score = 29.5 bits (58), Expect(2) = 5.8 Identities = 13/24 (54%), Positives = 13/24 (54%) Frame = +1 / +3 Query: 79 PRPPTDPHSGRQDV*RPRLGFLHQ 150 P PP GR D RPRL LHQ Sbjct: 384 PAPPRGAGRGRGDPRRPRLRVLHQ 455 Score = 21.7 bits (41), Expect(2) = 5.8 Identities = 9/16 (56%), Positives = 10/16 (62%) Frame = +1 / +2 Query: 145 HQLPGHLHIRAGHRVP 192 H L H +RAG RVP Sbjct: 1928 HALICHFVLRAGGRVP 1975
>LOC_Os08g25799:12008.t02347:unspliced-genomic myb family transcription factor-related protein, putative, expressed| Length = 8426 Score = 30.4 bits (60), Expect = 5.9 Identities = 11/27 (40%), Positives = 16/27 (59%) Frame = +1 / +2 Query: 142 LHQLPGHLHIRAGHRVPLCDGRPEVRE 222 + +LP H+H RA HR L P ++E Sbjct: 1721 IQRLPAHVHSRAAHRQHLPQSVPPIQE 1801
>LOC_Os05g50550:12005.t04487:unspliced-genomic prenyl transferase, putative, expressed| Length = 3407 Score = 30.4 bits (60), Expect = 5.9 Identities = 11/27 (40%), Positives = 16/27 (59%) Frame = +1 / -2 Query: 142 LHQLPGHLHIRAGHRVPLCDGRPEVRE 222 + +LP H+H RA HR L P ++E Sbjct: 340 IQRLPAHVHSRAAHRQHLPQSVPPIQE 260
>LOC_Os03g32860:12003.t02874:unspliced-genomic retrotransposon protein, putative, unclassified| Length = 2480 Score = 30.4 bits (60), Expect = 5.9 Identities = 11/31 (35%), Positives = 18/31 (58%) Frame = -3 / -1 Query: 213 FGSAITKWYAMTSTNMKMPRKLVKKPKSWSS 121 F S+ WY+ N PR+++KK K +S+ Sbjct: 1250 FSSSNAAWYSGVQVNFPTPRRVLKKGKFFSA 1158
>LOC_Os01g58920:12001.t05285:unspliced-genomic retrotransposon protein, putative, Ty3-gypsy subclass| Length = 9128 Score = 29.0 bits (57), Expect(2) = 6.6 Identities = 11/33 (33%), Positives = 19/33 (57%) Frame = +1 / -1 Query: 157 GHLHIRAGHRVPLCDGRPEVRELISFCLAMRPY 255 G LH +AG L G+P++ + + + +RPY Sbjct: 7700 GWLHRQAGRDTRLYHGQPQLLQFFAQAILVRPY 7602 Score = 22.6 bits (43), Expect(2) = 6.6 Identities = 13/36 (36%), Positives = 19/36 (52%) Frame = +2 / -3 Query: 257 ILRANRETCWLMGSVRLTVLFKWSYLAL*LESCKKK 364 +LR +R + L G + L +WS + LESC K Sbjct: 7260 VLRHHRRS*NLFGYLAR*ELGQWSTFSSFLESCLHK 7153
>LOC_Os07g07580:12007.t00636:unspliced-genomic ROOT HAIRLESS 1, putative, expressed| Length = 3534 Score = 25.8 bits (50), Expect(2) = 7.1 Identities = 8/13 (61%), Positives = 9/13 (69%) Frame = -2 / -3 Query: 337 CQITPLKKNCQAH 299 CQ+ P K NCQ H Sbjct: 2737 CQLHPCKYNCQLH 2699 Score = 24.4 bits (47), Expect(2) = 7.1 Identities = 9/22 (40%), Positives = 13/22 (59%) Frame = -2 / -1 Query: 283 TCFPICSQYNTVSLLNKRRSVL 218 TCF Q NT+ L K +S++ Sbjct: 1713 TCFKRRKQINTIKLFTKDKSLI 1648
>LOC_Os10g07400:12010.t00598:unspliced-genomic disease resistance RPP13-like protein 1, putative, expressed| Length = 4571 Score = 29.9 bits (59), Expect = 8.1 Identities = 11/29 (37%), Positives = 19/29 (65%) Frame = -3 / +1 Query: 201 ITKWYAMTSTNMKMPRKLVKKPKSWSSNI 115 +T+ + + +K+ RKL+K+ K WSS I Sbjct: 1777 VTQTNCVHISRLKLRRKLLKRKKKWSSRI 1863
>LOC_Os08g35960:12008.t03336:unspliced-genomic F-box domain containing protein, expressed| Length = 3543 Score = 29.9 bits (59), Expect = 8.1 Identities = 13/33 (39%), Positives = 17/33 (51%) Frame = +1 / +2 Query: 94 DPHSGRQDV*RPRLGFLHQLPGHLHIRAGHRVP 192 DPH + R + G LH P HL +R H+ P Sbjct: 494 DPHPLVLGLQRCQCGVLHPPPRHLRLRPAHQPP 592
>LOC_Os08g24060:12008.t02176:unspliced-genomic retrotransposon protein, putative, unclassified| Length = 1404 Score = 29.9 bits (59), Expect = 8.1 Identities = 11/31 (35%), Positives = 18/31 (58%) Frame = -3 / -2 Query: 213 FGSAITKWYAMTSTNMKMPRKLVKKPKSWSS 121 F S+ WY+ N +PR+++KK K S+ Sbjct: 977 FSSSNAAWYSGVQLNFPVPRRVLKKGKPLSA 885
>LOC_Os06g49460:12006.t04630:unspliced-genomic RER1A protein, putative, expressed| Length = 2563 Score = 29.9 bits (59), Expect = 8.1 Identities = 13/25 (52%), Positives = 14/25 (56%) Frame = +1 / +2 Query: 145 HQLPGHLHIRAGHRVPLCDGRPEVR 219 H P HL + HRVPL GRP R Sbjct: 395 HLRPRHLPPQPPHRVPLPHGRPGAR 469
>LOC_Os06g19900:12006.t01807:unspliced-genomic retrotransposon protein, putative, unclassified| Length = 7240 Score = 29.9 bits (59), Expect = 8.1 Identities = 11/31 (35%), Positives = 18/31 (58%) Frame = -3 / -1 Query: 213 FGSAITKWYAMTSTNMKMPRKLVKKPKSWSS 121 F S+ T W++ N PR+++KK K S+ Sbjct: 5536 FSSSNTAWHSGVQVNFSAPRRVLKKGKPLST 5444
>LOC_Os04g11300:12004.t00958:unspliced-genomic retrotransposon protein, putative, unclassified| Length = 2618 Score = 29.9 bits (59), Expect = 8.1 Identities = 12/33 (36%), Positives = 19/33 (57%) Frame = -3 / -1 Query: 213 FGSAITKWYAMTSTNMKMPRKLVKKPKSWSSNI 115 F S+ T W++ N PR+++KK K S+ I Sbjct: 800 FSSSNTAWHSGVQLNFPAPRRVLKKGKPLSAAI 702
>LOC_Os02g56920:12002.t05264:unspliced-genomic CER1, putative, expressed| Length = 4319 Score = 29.9 bits (59), Expect = 8.1 Identities = 13/23 (56%), Positives = 16/23 (69%) Frame = +1 / +3 Query: 127 PRLGFLHQLPGHLHIRAGHRVPL 195 PRL LH+LP L +RA +VPL Sbjct: 1125 PRLHRLHELPRPLQLRARPQVPL 1193 Database: tigr.seq.out Posted date: Jul 20, 2007 8:58 AM Number of letters in database: 166,841,660 Number of sequences in database: 56,278 Lambda K H 0.318 0.134 0.401 Matrix: BLOSUM62 Number of Sequences: 56278 Number of Hits to DB: 131,504,858 Number of extensions: 1903381 Number of successful extensions: 6482 Number of sequences better than 10.0: 26 Length of query: 124 Length of database: 55,613,886 Length adjustment: 46 Effective length of query: 78 Effective length of database: 53,025,098 Effective search space: 4135957644 Effective search space used: 4135957644 Neighboring words threshold: 13 Window for multiple hits: 40 X1: 16 ( 7.3 bits)
