ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf13p23
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1Q8EVM0:Y544_MYCPE UPF0144 protein MYPE5440 - Mycoplasma penetrans 28 7.4
2P37483:YYCA_BACSU Uncharacterized protein yycA - Bacillus subtilis 28 9.6
3Q6PQD5:ATM_PIG Serine-protein kinase ATM - Sus scrofa (Pig) 28 9.6
4P27743:ACVS_NOCLA N-(5-amino-5-carboxypentanoyl)-L-cysteinyl-D-v... 28 9.6

>Q8EVM0:Y544_MYCPE UPF0144 protein MYPE5440 - Mycoplasma penetrans|
          Length = 469
 Score = 28.5 bits (62), Expect = 7.4
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = -2

Query: 250 VSLLNKRRSVLVLRVCHHKVVRDDQHEYEDAQEVGEETQ 134
           +S++NK+R +L  +   +  +++ Q  Y+  QEV  E Q
Sbjct: 65  ISIINKKREILNHQRADYLKIKETQESYQQLQEVISEYQ 103



to top

>P37483:YYCA_BACSU Uncharacterized protein yycA - Bacillus subtilis|
          Length = 685

 Score = 28.1 bits (61), Expect = 9.6
 Identities = 15/33 (45%), Positives = 17/33 (51%)
 Frame = -3

Query: 192 WYAMTSTNMKMPRKLVKKPKSWSSNILPAAVRI 94
           WY M         +L K  K WSS +LPAAV I
Sbjct: 439 WYTM--------HRLYKNNKDWSSYLLPAAVLI 463



to top

>Q6PQD5:ATM_PIG Serine-protein kinase ATM - Sus scrofa (Pig)|
          Length = 3057

 Score = 28.1 bits (61), Expect = 9.6
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +1

Query: 151  LPGHLHIRAGHRVPLCDGRPEVRELI 228
            L  HLH+  G  +PL DG+ EV++ +
Sbjct: 1514 LESHLHVIVGTLIPLVDGQMEVQKQV 1539



to top

>P27743:ACVS_NOCLA N-(5-amino-5-carboxypentanoyl)-L-cysteinyl-D-valine synthase -|
            Nocardia lactamdurans
          Length = 3649

 Score = 28.1 bits (61), Expect = 9.6
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +1

Query: 148  QLPGHLHIRAGHRVPLCDGRPEVRELISFCLAMRPYYTESK*GNM 282
            Q   HL +  GH   L +G P+VR+ + +   M P+  E   G++
Sbjct: 3243 QATNHLTVE-GHGRELFEGAPDVRDTVGWFTTMHPFAVEVDPGDL 3286


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 57,493,424
Number of extensions: 1128305
Number of successful extensions: 2186
Number of sequences better than 10.0: 4
Number of HSP's gapped: 2186
Number of HSP's successfully gapped: 4
Length of query: 124
Length of database: 100,686,439
Length adjustment: 91
Effective length of query: 33
Effective length of database: 75,725,594
Effective search space: 2498944602
Effective search space used: 2498944602
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top