ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf13o23 |
|---|---|
| Clone Library Name | barley_pub |
>Q0DJA0:COPD1_ORYSJ Coatomer subunit delta-1 - Oryza sativa subsp. japonica (Rice)| Length = 524 Score = 889 bits (2297), Expect = 0.0 Identities = 454/525 (86%), Positives = 483/525 (92%), Gaps = 2/525 (0%) Frame = +3 Query: 183 MVVLAASIISKSGKALVSRQYVDMSRIRIEGLLAAFPKLVGTGKQHTYLETESVRYVYQP 362 MVVLAASIISKSGKALVSRQ+VDMSRIRIEGLLAAFPKLVGTGKQHTY+ETE+VRYVYQP Sbjct: 1 MVVLAASIISKSGKALVSRQFVDMSRIRIEGLLAAFPKLVGTGKQHTYVETENVRYVYQP 60 Query: 363 IEGLYLLLITNKQSNILEDLDTLRLLSKLVPEYS-SLDEDSICKTAFELIFAFDEAISLG 539 IEGLYLLLITNKQSNILEDLDTLRLLSKLVPEYS SLDE+ +CKTAFELIFAFDEAISLG Sbjct: 61 IEGLYLLLITNKQSNILEDLDTLRLLSKLVPEYSPSLDEEGVCKTAFELIFAFDEAISLG 120 Query: 540 NKENVTVQQVKQYCEMESHEEKAHKLMMQSKINETKDVMKKRASELDKIRMEKGKLDKGG 719 NKENVTVQQVKQYCEMESHEEKAHKLMMQSKINET+DVMKK+ASELDK+RME+GKLDKGG Sbjct: 121 NKENVTVQQVKQYCEMESHEEKAHKLMMQSKINETRDVMKKKASELDKMRMERGKLDKGG 180 Query: 720 YSSISGPRVIEKTFGDMNIXXXXXXXXXXXXXXXXADMDSFATKPKG-RPSAAATAPGKG 896 YSSISGPRVIEKTF DM+I DMDSFA+KPKG RPSAAATAPGKG Sbjct: 181 YSSISGPRVIEKTFNDMSITGSGFGSGSGLGGLGM-DMDSFASKPKGGRPSAAATAPGKG 239 Query: 897 FGMKLGKSQKTNQFLESLKAEGEVILEDVQXXXXXXXXXXXXXXXXITVTIEEKLNVVVK 1076 GMKLGK+QKTNQFLESLKAEGEVILEDVQ +TVTIEEKLNV VK Sbjct: 240 LGMKLGKTQKTNQFLESLKAEGEVILEDVQPSSVQSRASPLPPSDPVTVTIEEKLNVTVK 299 Query: 1077 RDGGVNNFDVQGTLALQVLNDADGFIQLQIENKDVPGLSFKTHPNIHKELFNSQQIVGAK 1256 RDGGVNNFDVQGTLALQVLNDADGFIQLQIEN+DVPGLSFKTHPNI+K+LFNSQQ+VGAK Sbjct: 300 RDGGVNNFDVQGTLALQVLNDADGFIQLQIENQDVPGLSFKTHPNINKDLFNSQQVVGAK 359 Query: 1257 DPNRPFPSGQNETPLVKWRIQGMNESNLPLSVNCWPSVSGNETYVNIEYEASEMFDLNNV 1436 DPNRPFPSGQNETPLVKWRIQGM+ES+LPLSVNCWPSVSG+ETYVNIEYEA+EMFDL+NV Sbjct: 360 DPNRPFPSGQNETPLVKWRIQGMDESSLPLSVNCWPSVSGSETYVNIEYEAAEMFDLHNV 419 Query: 1437 VISIPLPALREAPTVKQIDGEWKYDSRNSVLEWSIILIDQSNRSGSMEFIVPPADPSTFF 1616 VISIPLPALREAP+V+QIDGEWKYDSRNSVLEWSI+LIDQSNRSGSMEF+VPPADPSTFF Sbjct: 420 VISIPLPALREAPSVRQIDGEWKYDSRNSVLEWSILLIDQSNRSGSMEFVVPPADPSTFF 479 Query: 1617 PISIGFGASNTFSDLKVTGIHPLKEGNPPKYSQRVRLVAANYQIV 1751 PISIGF AS+TFSDLKVTGI PLK+GNPPKYSQR RLVAANYQ+V Sbjct: 480 PISIGFSASSTFSDLKVTGIRPLKDGNPPKYSQRARLVAANYQVV 524
>Q0DJ99:COPD2_ORYSJ Coatomer subunit delta-2 - Oryza sativa subsp. japonica (Rice)| Length = 523 Score = 885 bits (2287), Expect = 0.0 Identities = 447/524 (85%), Positives = 479/524 (91%), Gaps = 1/524 (0%) Frame = +3 Query: 183 MVVLAASIISKSGKALVSRQYVDMSRIRIEGLLAAFPKLVGTGKQHTYLETESVRYVYQP 362 MVVLAASIISKSGKALVSRQ+VDMSRIRIEGLLAAFPKLVGTGKQHTY+ETE+VRYVYQP Sbjct: 1 MVVLAASIISKSGKALVSRQFVDMSRIRIEGLLAAFPKLVGTGKQHTYVETENVRYVYQP 60 Query: 363 IEGLYLLLITNKQSNILEDLDTLRLLSKLVPEYS-SLDEDSICKTAFELIFAFDEAISLG 539 IEGLYLLLITNKQSNILEDLDTLRLLSKLVPEYS SLDE+ +CKTAFELIFAFDEAI LG Sbjct: 61 IEGLYLLLITNKQSNILEDLDTLRLLSKLVPEYSPSLDEEGVCKTAFELIFAFDEAICLG 120 Query: 540 NKENVTVQQVKQYCEMESHEEKAHKLMMQSKINETKDVMKKRASELDKIRMEKGKLDKGG 719 NKENVTVQQVKQYCEMESHEEKAHKLMMQSKINET+DVMKK+ASELDK++ME+GKLDKGG Sbjct: 121 NKENVTVQQVKQYCEMESHEEKAHKLMMQSKINETRDVMKKKASELDKMKMERGKLDKGG 180 Query: 720 YSSISGPRVIEKTFGDMNIXXXXXXXXXXXXXXXXADMDSFATKPKGRPSAAATAPGKGF 899 YS+ISGPRV+EK FGDM+I DMDSFA+KPKGRPSAAATAPGKG Sbjct: 181 YSAISGPRVVEKAFGDMSITGSGFGSGSGLGGLSM-DMDSFASKPKGRPSAAATAPGKGL 239 Query: 900 GMKLGKSQKTNQFLESLKAEGEVILEDVQXXXXXXXXXXXXXXXXITVTIEEKLNVVVKR 1079 GMKLGK+QKTNQFLESLKAEGEVILEDVQ +TVTIEEKLNV VKR Sbjct: 240 GMKLGKTQKTNQFLESLKAEGEVILEDVQPSSVQSRVSPLPPSDPVTVTIEEKLNVTVKR 299 Query: 1080 DGGVNNFDVQGTLALQVLNDADGFIQLQIENKDVPGLSFKTHPNIHKELFNSQQIVGAKD 1259 DGGVNNFDVQGTLALQVLND DGFIQLQIEN+DVPGLSFKTHPNI+K+LFNSQQ+VGAKD Sbjct: 300 DGGVNNFDVQGTLALQVLNDTDGFIQLQIENQDVPGLSFKTHPNINKDLFNSQQVVGAKD 359 Query: 1260 PNRPFPSGQNETPLVKWRIQGMNESNLPLSVNCWPSVSGNETYVNIEYEASEMFDLNNVV 1439 PNRPFPSGQNETPLVKWRI GM+ES+LPLSVNCWPSVSGNETYVNIEYEA+EMFDL+NVV Sbjct: 360 PNRPFPSGQNETPLVKWRIHGMDESSLPLSVNCWPSVSGNETYVNIEYEAAEMFDLHNVV 419 Query: 1440 ISIPLPALREAPTVKQIDGEWKYDSRNSVLEWSIILIDQSNRSGSMEFIVPPADPSTFFP 1619 ISIPLPALREAP+V+QIDGEW+YDSRNSVLEWSI+LIDQSNRSGSMEF+VPPADPSTFFP Sbjct: 420 ISIPLPALREAPSVRQIDGEWRYDSRNSVLEWSILLIDQSNRSGSMEFVVPPADPSTFFP 479 Query: 1620 ISIGFGASNTFSDLKVTGIHPLKEGNPPKYSQRVRLVAANYQIV 1751 ISIGF AS+TFSDLKVTGI PLK+GNPPKYSQR RLV ANYQ+V Sbjct: 480 ISIGFSASSTFSDLKVTGIRPLKDGNPPKYSQRARLVTANYQVV 523
>P49661:COPD3_ORYSJ Coatomer subunit delta-3 - Oryza sativa subsp. japonica (Rice)| Length = 518 Score = 785 bits (2026), Expect = 0.0 Identities = 405/530 (76%), Positives = 448/530 (84%), Gaps = 7/530 (1%) Frame = +3 Query: 183 MVVLAASIISKSGKALVSRQYVDMSRIRIEGLLAAFPKLVGTGKQHTYLETESVRYVYQP 362 MVVLAASIISKSGKALVSRQ+VDMSRIRI+GLLAAFPKLVG+GKQHTY+ETE+VRYVYQP Sbjct: 1 MVVLAASIISKSGKALVSRQFVDMSRIRIDGLLAAFPKLVGSGKQHTYVETENVRYVYQP 60 Query: 363 IEGLYLLLITNKQSNILEDLDTLRLLSKLVPEYS-SLDEDSICKTAFELIFAFDEAISLG 539 IE LYLLLITNKQSNILEDLDTLRLLSKL+PEY+ SLDE+ +CK AFEL+FAF EAISLG Sbjct: 61 IEALYLLLITNKQSNILEDLDTLRLLSKLIPEYAPSLDEEGVCKAAFELLFAFIEAISLG 120 Query: 540 NKENVTVQQVKQYCEMESHEEKAHKLMMQSKINETKDVMKKRASELDKIRMEKGKLDKGG 719 NKENVTV QVKQYCEMESHEEK HKL+MQSKINETKDVM+++ +E++K + ++GK DKGG Sbjct: 121 NKENVTVAQVKQYCEMESHEEKLHKLVMQSKINETKDVMRRKVTEIEKSKTDRGKPDKGG 180 Query: 720 YSSISGPRVIEKTFGDMNIXXXXXXXXXXXXXXXXADMDSFATKPKGRPSAAATA----- 884 + S+ P +F DM I DMDSF K KGRPSA A A Sbjct: 181 FGSLRTPN----SFSDMGIRGGGPGGDPIF-----GDMDSFTHKAKGRPSAPAPASASTK 231 Query: 885 -PGKGFGMKLGKSQKTNQFLESLKAEGEVILEDVQXXXXXXXXXXXXXXXXITVTIEEKL 1061 PG GMKL K+QKTNQFLESLKAEGEVILED Q ITVTIEEKL Sbjct: 232 VPG---GMKLSKAQKTNQFLESLKAEGEVILEDTQPSATQSRSSYIPPSDPITVTIEEKL 288 Query: 1062 NVVVKRDGGVNNFDVQGTLALQVLNDADGFIQLQIENKDVPGLSFKTHPNIHKELFNSQQ 1241 NV VKRDGGV+NFD+QGTLALQ+LND DGFIQLQIEN+DVPGL+FKTHPNI+KELFNSQQ Sbjct: 289 NVTVKRDGGVSNFDIQGTLALQILNDTDGFIQLQIENQDVPGLNFKTHPNINKELFNSQQ 348 Query: 1242 IVGAKDPNRPFPSGQNETPLVKWRIQGMNESNLPLSVNCWPSVSGNETYVNIEYEASEMF 1421 IVGAKDPNRPFPSGQNETPLVKWRIQ +NES+LPL+VNCWPSVSGNETYVNIEYEASEMF Sbjct: 349 IVGAKDPNRPFPSGQNETPLVKWRIQELNESSLPLAVNCWPSVSGNETYVNIEYEASEMF 408 Query: 1422 DLNNVVISIPLPALREAPTVKQIDGEWKYDSRNSVLEWSIILIDQSNRSGSMEFIVPPAD 1601 DL+NVVISIPLPALREAP V+QIDGEW+YDSRNSVLEWSIIL+DQSNRSGS+EF VP AD Sbjct: 409 DLHNVVISIPLPALREAPGVRQIDGEWRYDSRNSVLEWSIILVDQSNRSGSLEFTVPAAD 468 Query: 1602 PSTFFPISIGFGASNTFSDLKVTGIHPLKEGNPPKYSQRVRLVAANYQIV 1751 PSTFFPIS+GF ASNTFSDLKVT I PL+EG+PPK+SQR RLV NYQ+V Sbjct: 469 PSTFFPISVGFSASNTFSDLKVTAIRPLREGSPPKFSQRNRLVTYNYQVV 518
>Q93Y22:COPD_ARATH Coatomer subunit delta - Arabidopsis thaliana (Mouse-ear cress)| Length = 527 Score = 636 bits (1641), Expect = 0.0 Identities = 327/531 (61%), Positives = 414/531 (77%), Gaps = 8/531 (1%) Frame = +3 Query: 183 MVVLAASIISKSGKALVSRQYVDMSRIRIEGLLAAFPKLVGTGKQHTYLETESVRYVYQP 362 MVVLAA+I+ KSGK +VSR YVDMSRIRIEGLLAAFPKLVG GKQHTY+ETE+VRYVYQP Sbjct: 1 MVVLAAAIVVKSGKVIVSRHYVDMSRIRIEGLLAAFPKLVGMGKQHTYIETENVRYVYQP 60 Query: 363 IEGLYLLLITNKQSNILEDLDTLRLLSKLVPEYS-SLDEDSICKTAFELIFAFDEAISLG 539 IE L+LLL+T KQSNILEDL TL LLSKLVPEYS SLDE+ I + +FELIFAFDE ISLG Sbjct: 61 IEALFLLLVTTKQSNILEDLATLTLLSKLVPEYSMSLDEEGISRASFELIFAFDEVISLG 120 Query: 540 NKENVTVQQVKQYCEMESHEEKAHKLMMQSKINETKDVMKKRASELDKIRMEKGKLDKGG 719 +KE+VTV QVKQYCEMESHEEK HKL+MQSKIN+TKDVMK++A+E+DK ++EK K GG Sbjct: 121 HKESVTVAQVKQYCEMESHEEKLHKLVMQSKINDTKDVMKRKANEIDKSKIEKNK--PGG 178 Query: 720 YSSIS--GPRVIEKTFGDMNIXXXXXXXXXXXXXXXX-ADMDSFATKPKGRPSAAATAPG 890 +SS+ G +E F +++I +D+D TKPK R ++ TAP Sbjct: 179 FSSMGSMGSGRLESGFNELSISSGGGGGYGSGSGFGMISDVDPINTKPKDRSRSSVTAPP 238 Query: 891 KGFGMKLGKSQKTNQFLESLKAEGEVILEDVQXXXXXXXXXXXXXXXXITVTIEEKLNVV 1070 K GMKLGKS K NQ +ESLKAEGE ++EDV+ T+T+EEKLNV Sbjct: 239 KSSGMKLGKSGK-NQLMESLKAEGEDVIEDVKPTGQSKAAAPPPTDP-FTLTVEEKLNVA 296 Query: 1071 VKRDGGVNNFDVQGTLALQVLNDADGFIQLQIENKDVPGLSFKTHPNIHKELFNSQQIVG 1250 ++RDGG+++FD+QGTL+LQ+LN DGF+Q+QI + P + FKTHPNI++++FN++ I+G Sbjct: 297 LRRDGGLSSFDMQGTLSLQILNQEDGFVQVQIATGENPEILFKTHPNINRDMFNNENILG 356 Query: 1251 AKDPNRPFPSGQ--NETPLVKWRIQGMNESNLPLSVNCWPSVSGNETYVNIEYEASEMFD 1424 K P++PFP+GQ + L++WR+Q +ES +PL++NCWPSVSGNETYV++EYEAS MFD Sbjct: 357 LKRPDQPFPTGQGGDGVGLLRWRMQRADESMVPLTINCWPSVSGNETYVSLEYEASSMFD 416 Query: 1425 LNNVVISIPLPALREAPTVKQIDGEWKYDSRNSVLEWSIILIDQSNRSGSMEFIVPPADP 1604 L NV+IS+PLPALREAP+V+Q DGEW+YD RNSVLEWSI+LID SNRSGSMEF+VPP D Sbjct: 417 LTNVIISVPLPALREAPSVRQCDGEWRYDPRNSVLEWSILLIDNSNRSGSMEFVVPPVDS 476 Query: 1605 STFFPISIGFGASNTFSDLKVTGIHPLKEGN--PPKYSQRVRLVAANYQIV 1751 S FFPIS+ F A++T+S LKVTG+ PL+ G P++ QR +L+A NYQ++ Sbjct: 477 SVFFPISVQFAATSTYSGLKVTGMIPLRGGGGATPRFVQRTQLIAQNYQVI 527
>Q0J649:COPD4_ORYSJ Coatomer subunit delta-4 - Oryza sativa subsp. japonica (Rice)| Length = 376 Score = 530 bits (1364), Expect = e-149 Identities = 265/357 (74%), Positives = 297/357 (83%), Gaps = 1/357 (0%) Frame = +3 Query: 684 IRMEKGKLDKGGYSSISGPRVIEKTFGDMNIXXXXXXXXXXXXXXXXADMDSFATKPKGR 863 ++MEKGK +KGGYSSISGP+VIEK+F DM+I D D+F ++PKGR Sbjct: 21 MQMEKGKHNKGGYSSISGPQVIEKSFNDMSISCTGFGSGSGLGGLN-TDTDTFTSRPKGR 79 Query: 864 PSAAATAPGKGFGMKLGKSQKTNQFLESLKAEGEVILEDVQXXXXXXXXXXXXXXXXITV 1043 S T GKG GMKLG ++KTNQFLESLKAEGEVI+ED Q +TV Sbjct: 80 TSGGTTGAGKGIGMKLGNTKKTNQFLESLKAEGEVIMEDFQPCSLQSRSSPLPPSDPVTV 139 Query: 1044 TIEEKLNVVVKRDGGVNNFDVQGTLALQVLNDADGFIQLQIENKDVPGLSFKTHPNIHKE 1223 +EEKLNV VKRDGGVNNFDVQGTLAL VLNDADG I LQIE++D+PGLSFKTHPNI+K+ Sbjct: 140 AVEEKLNVAVKRDGGVNNFDVQGTLALLVLNDADGLILLQIESQDIPGLSFKTHPNINKD 199 Query: 1224 LFNSQQIVGAKDPNRPFPSGQNETPLVKWRIQGMNESNLPLSVNCWPSVSGNETYVNIEY 1403 LFNSQQI+GAKDP RPFPSGQNETPLVKWRIQGMNES+LPLSVNCWPS+ GNETYVNIEY Sbjct: 200 LFNSQQILGAKDPIRPFPSGQNETPLVKWRIQGMNESSLPLSVNCWPSILGNETYVNIEY 259 Query: 1404 EASEMFDLNNVVISIPLPALREAPTVKQIDGEWKYDSRNSVLEWSIILIDQSNRSGSMEF 1583 EASEMFDL++V+ISIPLPALREAP V+QIDGEWKYDSRNSVLEWSIILIDQSNRSGSMEF Sbjct: 260 EASEMFDLHSVIISIPLPALREAPRVRQIDGEWKYDSRNSVLEWSIILIDQSNRSGSMEF 319 Query: 1584 IVPPADPSTFFPISIGFGASNTFSDLKVTGIHPLKEG-NPPKYSQRVRLVAANYQIV 1751 +VPPADPS F+PIS+GF ASNTFS++KVTGI PL EG NPPKYSQRVRLVA NYQ+V Sbjct: 320 VVPPADPSMFYPISVGFSASNTFSNVKVTGIRPLNEGSNPPKYSQRVRLVADNYQVV 376
>Q66H80:COPD_RAT Coatomer subunit delta - Rattus norvegicus (Rat)| Length = 511 Score = 404 bits (1039), Expect = e-112 Identities = 220/539 (40%), Positives = 341/539 (63%), Gaps = 16/539 (2%) Frame = +3 Query: 183 MVVLAASIISKSGKALVSRQYVDMSRIRIEGLLAAFPKLVGTGKQHTYLETESVRYVYQP 362 MV+LAA++ +K+GKA+VSRQ+V+M+R RIEGLLAAFPKL+ TGKQHT++ETESVRYVYQP Sbjct: 1 MVLLAAAVCTKAGKAIVSRQFVEMTRTRIEGLLAAFPKLMNTGKQHTFVETESVRYVYQP 60 Query: 363 IEGLYLLLITNKQSNILEDLDTLRLLSKLVPEY-SSLDEDSICKTAFELIFAFDEAISLG 539 +E LY++LIT K SNILEDL+TLRL S+++PEY +L+E+ I + F+LIFAFDE ++LG Sbjct: 61 MEKLYMVLITTKNSNILEDLETLRLFSRVIPEYCRALEENEISEHCFDLIFAFDEIVALG 120 Query: 540 NKENVTVQQVKQYCEMESHEEKAHKLMMQSKINETKDVMKKRASELDKIRME---KGKLD 710 +ENV + Q++ + EM+SHEEK + + +++ E K M+++A EL + R + +GK Sbjct: 121 YRENVNLAQIRTFTEMDSHEEKVFRAVRETQEREAKAEMRRKAKELQQARRDAERQGKKA 180 Query: 711 KG----GYSSISG---PRVIEKTFGDMNIXXXXXXXXXXXXXXXXADMDSFATKPKGRPS 869 G G S++SG +I +T + + KPK P Sbjct: 181 PGFGGFGSSAVSGGSTAAMITETIIETD-------------------------KPKVAP- 214 Query: 870 AAATAPGKGFGMKLG-KSQKTNQFLESLKAEGEVILED---VQXXXXXXXXXXXXXXXXI 1037 A A G +KLG K ++ + F++ LK+EGE I+ + + Sbjct: 215 APARPSGPSKALKLGAKGKEVDNFVDKLKSEGETIMSSNMGKRTSEAAKVHAPPINMESV 274 Query: 1038 TVTIEEKLNVVVKRDGGVNNFDVQGTLALQVLNDADGFIQLQIENKDVPGLSFKTHPNIH 1217 + IEEK+ + RDGG+ N ++ G + L++ +D G I+L +EN+D G+ +THPN+ Sbjct: 275 HMKIEEKITLTCGRDGGLQNMELHGMIMLRISDDKFGRIRLHVENEDKKGVQLQTHPNVD 334 Query: 1218 KELFNSQQIVGAKDPNRPFPSGQNETPLVKWRIQGMNESNLPLSVNCWPSVSGNETYVNI 1397 K+LF ++ ++G K+P + FP ++ ++KWR+Q ES +PL++NCWPS SGN VNI Sbjct: 335 KKLFTAESLIGLKNPEKSFPV-NSDVGVLKWRLQTTEESFIPLTINCWPSESGNGCDVNI 393 Query: 1398 EYEASE-MFDLNNVVISIPLPALREAPTVKQIDGEWKYDSRNSVLEWSIILIDQSNRSGS 1574 EYE E +LN+VVI+IPLP+ AP + +IDGE+++DSR + LEW + +ID N+SGS Sbjct: 394 EYELQEDNLELNDVVITIPLPSGVGAPVIGEIDGEYRHDSRRNTLEWCLPVIDAKNKSGS 453 Query: 1575 MEFIVPPADPSTFFPISIGFGASNTFSDLKVTGIHPLKEGNPPKYSQRVRLVAANYQIV 1751 +EF + P P+ FFP+ + F + + +++VT + + +P ++S + Y+I+ Sbjct: 454 LEFSI-PGQPNDFFPVQVSFISKKNYCNIQVTKVTQVDGNSPVRFSTETTFLVDKYEIL 511
>Q5XJY5:COPD_MOUSE Coatomer subunit delta - Mus musculus (Mouse)| Length = 511 Score = 403 bits (1036), Expect = e-111 Identities = 220/539 (40%), Positives = 340/539 (63%), Gaps = 16/539 (2%) Frame = +3 Query: 183 MVVLAASIISKSGKALVSRQYVDMSRIRIEGLLAAFPKLVGTGKQHTYLETESVRYVYQP 362 MV+LAA++ +K+GKA+VSRQ+V+M+R RIEGLLAAFPKL+ TGKQHT++ETESVRYVYQP Sbjct: 1 MVLLAAAVCTKAGKAIVSRQFVEMTRTRIEGLLAAFPKLMNTGKQHTFVETESVRYVYQP 60 Query: 363 IEGLYLLLITNKQSNILEDLDTLRLLSKLVPEY-SSLDEDSICKTAFELIFAFDEAISLG 539 +E LY++LIT K SNILEDL+TLRL S+++PEY +L+E+ I + F+LIFAFDE ++LG Sbjct: 61 MEKLYMVLITTKNSNILEDLETLRLFSRVIPEYCRALEENEISEHCFDLIFAFDEIVALG 120 Query: 540 NKENVTVQQVKQYCEMESHEEKAHKLMMQSKINETKDVMKKRASELDKIRME---KGKLD 710 +ENV + Q++ + EM+SHEEK + + +++ E K M+++A EL + R + +GK Sbjct: 121 YRENVNLAQIRTFTEMDSHEEKVFRAVRETQEREAKAEMRRKAKELQQARRDAERQGKKA 180 Query: 711 KG----GYSSISG---PRVIEKTFGDMNIXXXXXXXXXXXXXXXXADMDSFATKPKGRPS 869 G G S++SG +I +T + + KPK P Sbjct: 181 PGFGGFGSSAVSGGSTAAMITETIIETD-------------------------KPKVAP- 214 Query: 870 AAATAPGKGFGMKLG-KSQKTNQFLESLKAEGEVILED---VQXXXXXXXXXXXXXXXXI 1037 A A G +KLG K ++ + F++ LK+EGE I+ + + Sbjct: 215 APARPSGPSKALKLGAKGKEVDNFVDKLKSEGETIMSSNMGKRTSEATKVHAPPINMESV 274 Query: 1038 TVTIEEKLNVVVKRDGGVNNFDVQGTLALQVLNDADGFIQLQIENKDVPGLSFKTHPNIH 1217 + IEEK+ + RDGG+ N ++ G L++ +D G I+L +EN+D G+ +THPN+ Sbjct: 275 HMKIEEKITLTCGRDGGLQNMELHGMTMLRISDDKFGRIRLHVENEDKKGVQLQTHPNVD 334 Query: 1218 KELFNSQQIVGAKDPNRPFPSGQNETPLVKWRIQGMNESNLPLSVNCWPSVSGNETYVNI 1397 K+LF ++ ++G K+P + FP ++ ++KWR+Q ES +PL++NCWPS SGN VNI Sbjct: 335 KKLFTAESLIGLKNPEKSFPV-NSDVGVLKWRLQTTEESFIPLTINCWPSESGNGCDVNI 393 Query: 1398 EYEASE-MFDLNNVVISIPLPALREAPTVKQIDGEWKYDSRNSVLEWSIILIDQSNRSGS 1574 EYE E +LN+VVI+IPLP+ AP + +IDGE+++DSR + LEW + +ID N+SGS Sbjct: 394 EYELQEDNLELNDVVITIPLPSGVGAPVIGEIDGEYRHDSRRNTLEWCLPVIDAKNKSGS 453 Query: 1575 MEFIVPPADPSTFFPISIGFGASNTFSDLKVTGIHPLKEGNPPKYSQRVRLVAANYQIV 1751 +EF + P P+ FFP+ + F + + +++VT + + +P ++S + Y+I+ Sbjct: 454 LEFSI-PGQPNDFFPVQVSFISKKNYCNIQVTKVTQVDGNSPVRFSTETTFLVDKYEIL 511
>Q5RA77:COPD_PONPY Coatomer subunit delta - Pongo pygmaeus (Orangutan)| Length = 511 Score = 402 bits (1032), Expect = e-111 Identities = 219/539 (40%), Positives = 340/539 (63%), Gaps = 16/539 (2%) Frame = +3 Query: 183 MVVLAASIISKSGKALVSRQYVDMSRIRIEGLLAAFPKLVGTGKQHTYLETESVRYVYQP 362 MV+LAA++ +K+GKA+VSRQ+V+M+R RIEGLLAAFPKL+ TGKQHT++ETESVRYVYQP Sbjct: 1 MVLLAAAVCTKAGKAIVSRQFVEMTRTRIEGLLAAFPKLMNTGKQHTFVETESVRYVYQP 60 Query: 363 IEGLYLLLITNKQSNILEDLDTLRLLSKLVPEY-SSLDEDSICKTAFELIFAFDEAISLG 539 +E LY++LIT K SNILEDL+TLRL S+++PEY +L+E+ I + F+LIFAFDE ++LG Sbjct: 61 MEKLYMVLITTKNSNILEDLETLRLFSRVIPEYCRALEENEISEHCFDLIFAFDEIVALG 120 Query: 540 NKENVTVQQVKQYCEMESHEEKAHKLMMQSKINETKDVMKKRASELDKIRME---KGKLD 710 +ENV + Q++ + EM+SHEEK + + +++ E K M+++A EL + R + +GK Sbjct: 121 YRENVNLAQIRTFTEMDSHEEKVFRAVRETQEREAKAEMRRKAKELQQARRDAERQGKKA 180 Query: 711 KG----GYSSISG---PRVIEKTFGDMNIXXXXXXXXXXXXXXXXADMDSFATKPKGRPS 869 G G S++SG +I +T + + KPK P Sbjct: 181 PGFGGFGSSAVSGGSTAAMITETIIETD-------------------------KPKVAP- 214 Query: 870 AAATAPGKGFGMKLG-KSQKTNQFLESLKAEGEVILED---VQXXXXXXXXXXXXXXXXI 1037 A A G +KLG K ++ + F++ LK+EGE I+ + + Sbjct: 215 APARPSGPSKALKLGAKGKEVDNFVDKLKSEGETIMSSSMGKRTSEASKMHAPPINMESV 274 Query: 1038 TVTIEEKLNVVVKRDGGVNNFDVQGTLALQVLNDADGFIQLQIENKDVPGLSFKTHPNIH 1217 + IEEK+ + RDGG+ N ++ G + L++ +D G I+L +EN+D G+ +THPN+ Sbjct: 275 HMKIEEKITLTCGRDGGLQNMELHGMIMLRISDDKYGRIRLHVENEDKKGVQLQTHPNVD 334 Query: 1218 KELFNSQQIVGAKDPNRPFPSGQNETPLVKWRIQGMNESNLPLSVNCWPSVSGNETYVNI 1397 K+LF ++ ++G K+P + FP ++ ++KWR+Q ES +PL++NCWPS SGN VNI Sbjct: 335 KKLFTAESLIGLKNPEKSFPV-NSDVGVLKWRLQTTEESFIPLTINCWPSESGNGCDVNI 393 Query: 1398 EYEASE-MFDLNNVVISIPLPALREAPTVKQIDGEWKYDSRNSVLEWSIILIDQSNRSGS 1574 EYE E +LN+VVI+IPLP+ AP + +IDGE+++DSR + LEW + +ID N+SGS Sbjct: 394 EYELQEDNLELNDVVITIPLPSGVGAPVIGEIDGEYRHDSRRNTLEWCLPVIDAKNKSGS 453 Query: 1575 MEFIVPPADPSTFFPISIGFGASNTFSDLKVTGIHPLKEGNPPKYSQRVRLVAANYQIV 1751 +EF + P+ FFP+ + F + + +++VT + + +P ++S + Y+I+ Sbjct: 454 LEFSI-AGQPNDFFPVQVSFVSKKNYCNIQVTKVTQVDGNSPVRFSTETTFLVDKYEIL 511
>P48444:COPD_HUMAN Coatomer subunit delta - Homo sapiens (Human)| Length = 511 Score = 402 bits (1032), Expect = e-111 Identities = 219/539 (40%), Positives = 340/539 (63%), Gaps = 16/539 (2%) Frame = +3 Query: 183 MVVLAASIISKSGKALVSRQYVDMSRIRIEGLLAAFPKLVGTGKQHTYLETESVRYVYQP 362 MV+LAA++ +K+GKA+VSRQ+V+M+R RIEGLLAAFPKL+ TGKQHT++ETESVRYVYQP Sbjct: 1 MVLLAAAVCTKAGKAIVSRQFVEMTRTRIEGLLAAFPKLMNTGKQHTFVETESVRYVYQP 60 Query: 363 IEGLYLLLITNKQSNILEDLDTLRLLSKLVPEY-SSLDEDSICKTAFELIFAFDEAISLG 539 +E LY++LIT K SNILEDL+TLRL S+++PEY +L+E+ I + F+LIFAFDE ++LG Sbjct: 61 MEKLYMVLITTKNSNILEDLETLRLFSRVIPEYCRALEENEISEHCFDLIFAFDEIVALG 120 Query: 540 NKENVTVQQVKQYCEMESHEEKAHKLMMQSKINETKDVMKKRASELDKIRME---KGKLD 710 +ENV + Q++ + EM+SHEEK + + +++ E K M+++A EL + R + +GK Sbjct: 121 YRENVNLAQIRTFTEMDSHEEKVFRAVRETQEREAKAEMRRKAKELQQARRDAERQGKKA 180 Query: 711 KG----GYSSISG---PRVIEKTFGDMNIXXXXXXXXXXXXXXXXADMDSFATKPKGRPS 869 G G S++SG +I +T + + KPK P Sbjct: 181 PGFGGFGSSAVSGGSTAAMITETIIETD-------------------------KPKVAP- 214 Query: 870 AAATAPGKGFGMKLG-KSQKTNQFLESLKAEGEVILED---VQXXXXXXXXXXXXXXXXI 1037 A A G +KLG K ++ + F++ LK+EGE I+ + + Sbjct: 215 APARPSGPSKALKLGAKGKEVDNFVDKLKSEGETIMSSSMGKRTSEATKMHAPPINMESV 274 Query: 1038 TVTIEEKLNVVVKRDGGVNNFDVQGTLALQVLNDADGFIQLQIENKDVPGLSFKTHPNIH 1217 + IEEK+ + RDGG+ N ++ G + L++ +D G I+L +EN+D G+ +THPN+ Sbjct: 275 HMKIEEKITLTCGRDGGLQNMELHGMIMLRISDDKYGRIRLHVENEDKKGVQLQTHPNVD 334 Query: 1218 KELFNSQQIVGAKDPNRPFPSGQNETPLVKWRIQGMNESNLPLSVNCWPSVSGNETYVNI 1397 K+LF ++ ++G K+P + FP ++ ++KWR+Q ES +PL++NCWPS SGN VNI Sbjct: 335 KKLFTAESLIGLKNPEKSFPV-NSDVGVLKWRLQTTEESFIPLTINCWPSESGNGCDVNI 393 Query: 1398 EYEASE-MFDLNNVVISIPLPALREAPTVKQIDGEWKYDSRNSVLEWSIILIDQSNRSGS 1574 EYE E +LN+VVI+IPLP+ AP + +IDGE+++DSR + LEW + +ID N+SGS Sbjct: 394 EYELQEDNLELNDVVITIPLPSGVGAPVIGEIDGEYRHDSRRNTLEWCLPVIDAKNKSGS 453 Query: 1575 MEFIVPPADPSTFFPISIGFGASNTFSDLKVTGIHPLKEGNPPKYSQRVRLVAANYQIV 1751 +EF + P+ FFP+ + F + + +++VT + + +P ++S + Y+I+ Sbjct: 454 LEFSI-AGQPNDFFPVQVSFVSKKNYCNIQVTKVTQVDGNSPVRFSTETTFLVDKYEIL 511
>P53619:COPD_BOVIN Coatomer subunit delta - Bos taurus (Bovine)| Length = 511 Score = 400 bits (1028), Expect = e-110 Identities = 219/539 (40%), Positives = 340/539 (63%), Gaps = 16/539 (2%) Frame = +3 Query: 183 MVVLAASIISKSGKALVSRQYVDMSRIRIEGLLAAFPKLVGTGKQHTYLETESVRYVYQP 362 MV+LAA++ +K+GKA+VSRQ+V+M+R RIEGLLAAFPKL+ TGKQHT++ETESVRYVYQP Sbjct: 1 MVLLAAAVCTKAGKAIVSRQFVEMTRTRIEGLLAAFPKLMNTGKQHTFVETESVRYVYQP 60 Query: 363 IEGLYLLLITNKQSNILEDLDTLRLLSKLVPEY-SSLDEDSICKTAFELIFAFDEAISLG 539 +E LY++LIT K SNILEDL+TLRL S+++PEY +L+E+ I + F+LIFAFDE ++LG Sbjct: 61 MEKLYMVLITTKNSNILEDLETLRLFSRVIPEYCRALEENEISEHCFDLIFAFDEIVALG 120 Query: 540 NKENVTVQQVKQYCEMESHEEKAHKLMMQSKINETKDVMKKRASELDKIRME---KGKLD 710 +ENV + Q++ + EM+SHEEK + + +++ E K M+++A EL + R + +GK Sbjct: 121 YRENVNLAQIRTFTEMDSHEEKVFRAVRETQEREAKAEMRRKAKELQQARRDAERQGKKA 180 Query: 711 KG----GYSSISG---PRVIEKTFGDMNIXXXXXXXXXXXXXXXXADMDSFATKPKGRPS 869 G G S++SG +I +T + + KPK P Sbjct: 181 PGFGGFGSSTVSGGSTTSMITETIIETD-------------------------KPKVAP- 214 Query: 870 AAATAPGKGFGMKLG-KSQKTNQFLESLKAEGEVILED---VQXXXXXXXXXXXXXXXXI 1037 A A G +KLG K ++ + F++ LK+EGE I+ + + Sbjct: 215 APARPSGPSKALKLGAKGKEVDNFVDKLKSEGENIISSNMGKRTSEATKVHAPPINMESV 274 Query: 1038 TVTIEEKLNVVVKRDGGVNNFDVQGTLALQVLNDADGFIQLQIENKDVPGLSFKTHPNIH 1217 + IEEK+ + RDGG+ N ++ G + L++ +D G I+L +EN+D G+ +THPN+ Sbjct: 275 HMKIEEKITLTCGRDGGLQNMELHGMIMLRISDDKFGRIRLHVENEDKKGVQLQTHPNVD 334 Query: 1218 KELFNSQQIVGAKDPNRPFPSGQNETPLVKWRIQGMNESNLPLSVNCWPSVSGNETYVNI 1397 K+LF ++ ++G K+P + FP ++ ++KWR+Q ES +PL++NCWPS SGN VNI Sbjct: 335 KKLFTAESLIGLKNPEKSFPV-NSDVGVLKWRLQTTEESFIPLTINCWPSESGNGCDVNI 393 Query: 1398 EYEASE-MFDLNNVVISIPLPALREAPTVKQIDGEWKYDSRNSVLEWSIILIDQSNRSGS 1574 EYE E +LN+VVI+IPLP+ AP + +IDGE+++DSR + LEW + +ID N+SGS Sbjct: 394 EYELQEDNLELNDVVITIPLPSGVGAPVIGEIDGEYRHDSRRNTLEWCLPVIDAKNKSGS 453 Query: 1575 MEFIVPPADPSTFFPISIGFGASNTFSDLKVTGIHPLKEGNPPKYSQRVRLVAANYQIV 1751 +EF + P+ FFP+ + F + + +++VT + + +P ++S + Y+I+ Sbjct: 454 LEFSI-AGQPNDFFPVQVSFISKKNYCNIQVTKVTQVDGNSPVRFSTETTFLVDKYEIL 511
>Q5ZL57:COPD_CHICK Coatomer subunit delta - Gallus gallus (Chicken)| Length = 510 Score = 397 bits (1021), Expect = e-110 Identities = 214/530 (40%), Positives = 332/530 (62%), Gaps = 7/530 (1%) Frame = +3 Query: 183 MVVLAASIISKSGKALVSRQYVDMSRIRIEGLLAAFPKLVGTGKQHTYLETESVRYVYQP 362 MV+LAA++ +K+GKA+VSRQ+V+M+R RIEGLLAAFPKL+ TGKQHT++ETESVRYVYQP Sbjct: 1 MVLLAAAVCTKAGKAIVSRQFVEMTRTRIEGLLAAFPKLMNTGKQHTFVETESVRYVYQP 60 Query: 363 IEGLYLLLITNKQSNILEDLDTLRLLSKLVPEYS-SLDEDSICKTAFELIFAFDEAISLG 539 +E LY++LIT K SNILEDL+TLRL S+++PEY +L+E+ I + F+LIFAFDE ++LG Sbjct: 61 MEKLYMVLITTKNSNILEDLETLRLFSRVIPEYCRALEENEISEHCFDLIFAFDEIVALG 120 Query: 540 NKENVTVQQVKQYCEMESHEEKAHKLMMQSKINETKDVMKKRASELDKIRMEKGKLDKG- 716 +ENV + Q++ + EM+SHEEK + + +++ E K M+++A EL + R + +L K Sbjct: 121 YRENVNLAQIRTFTEMDSHEEKVFRAVRETQEREAKAEMRRKAKELQQARRDAERLGKKA 180 Query: 717 -GYSSISGPRVIEKTFGDMNIXXXXXXXXXXXXXXXXADMDSFATKPKGRPSAAATAPGK 893 G+ V T M + KPK P A + G Sbjct: 181 PGFGGFGSSAVSGGTTAAM-----------------ITETIIETEKPKVAP-APSRPSGP 222 Query: 894 GFGMKLG-KSQKTNQFLESLKAEGEVILEDV--QXXXXXXXXXXXXXXXXITVTIEEKLN 1064 +KLG K ++ + F++ LK+EGE I+ V + + + IEEK++ Sbjct: 223 SKALKLGAKGKEVDNFVDKLKSEGENIMTSVGKRSTEAAKVLAPPINMESVHMKIEEKIS 282 Query: 1065 VVVKRDGGVNNFDVQGTLALQVLNDADGFIQLQIENKDVPGLSFKTHPNIHKELFNSQQI 1244 + RDGG+ N ++ G + L + ++ I+L +EN+D G+ +THPN+ K+LF ++ Sbjct: 283 LTCGRDGGLQNMELHGMIMLHISDEKFARIRLHVENEDKRGVQLQTHPNVDKKLFTAESQ 342 Query: 1245 VGAKDPNRPFPSGQNETPLVKWRIQGMNESNLPLSVNCWPSVSGNETYVNIEYE-ASEMF 1421 +G K+P + FP ++ ++KWR+Q ES +PL++NCWPS SGN VNIEYE E Sbjct: 343 IGLKNPEKSFPI-NSDVGVLKWRLQTTEESFIPLTINCWPSESGNSCDVNIEYELQEESL 401 Query: 1422 DLNNVVISIPLPALREAPTVKQIDGEWKYDSRNSVLEWSIILIDQSNRSGSMEFIVPPAD 1601 +LN+VVI IPLP+ AP + +IDGE+++DSR ++LEW + +ID N+SGS+EF + Sbjct: 402 ELNDVVIMIPLPSGVGAPVIGEIDGEYRHDSRRNLLEWCLPVIDAKNKSGSLEFSI-AGQ 460 Query: 1602 PSTFFPISIGFGASNTFSDLKVTGIHPLKEGNPPKYSQRVRLVAANYQIV 1751 P+ FFP+ + F + + +++VT + + +P ++S + Y+I+ Sbjct: 461 PNDFFPVQVSFISKKNYCNIQVTKVTQVDGNSPVRFSTETTFLVDKYEIL 510
>Q09236:COPD_CAEEL Probable coatomer subunit delta - Caenorhabditis elegans| Length = 515 Score = 316 bits (810), Expect = 2e-85 Identities = 194/540 (35%), Positives = 294/540 (54%), Gaps = 17/540 (3%) Frame = +3 Query: 183 MVVLAASIISKSGKALVSRQYV-DMSRIRIEGLLAAFPKLVGTGK-----QHTYLETESV 344 MV++AA I+SK+GK LV+RQ+V DM R R+EGL+ AFPKL+G K QHT++ET+SV Sbjct: 1 MVLIAACILSKTGKLLVARQFVNDMMRSRLEGLVDAFPKLIGNEKEAATRQHTFVETDSV 60 Query: 345 RYVYQPIEGLYLLLITNKQSNILEDLDTLRLLSKLVPEY-SSLDEDSICKTAFELIFAFD 521 RYVY P++ +YL+L+T K SNILEDL+TLRL +++PEY S +E I F+LIFAFD Sbjct: 61 RYVYHPLDNIYLVLVTTKNSNILEDLETLRLFVRVIPEYCRSNEEKEILAHDFDLIFAFD 120 Query: 522 EAISLGNKENVTVQQVKQYCEMESHEEKAHKLMMQSKINETKDVMKKRASELDKIRMEKG 701 E ++LG +E+V + Q++ + EM+SHEE+ + +++ K M ++A EL R +K Sbjct: 121 EVVTLGYRESVNLAQIRTFTEMDSHEERVFMQIKEAQEKAAKQAMAEKAKELK--RAQKE 178 Query: 702 KLDKGGYSSISGPRVIEKTFGDMNIXXXXXXXXXXXXXXXXADMDSFATKPKGRPSAAAT 881 L +G S I + + + + RPSA Sbjct: 179 ALSRGLKPSYQSSTGISSS--------------------STPNAAAVSEPAAPRPSAPKG 218 Query: 882 APGKGFGMKL-GKSQKTNQFLESLKAEGEVILE--------DVQXXXXXXXXXXXXXXXX 1034 G G +KL GK+ + FL++L+ +G+ I V Sbjct: 219 PIGGGKALKLGGKTNNEDDFLDTLRQQGQSIAPVQKASLSGGVSSLAAPISTAPRVKREV 278 Query: 1035 ITVTIEEKLNVVVKRDGGVNNFDVQGTLALQVLNDADGFIQLQIENKDVPGLSFKTHPNI 1214 + V EEK+N V RDGG+ + +VQ T+ L + + I +++ N G + HPN+ Sbjct: 279 VHVRTEEKINTRVSRDGGLESGEVQATVTLSIGSPEFIPISIKMNNGSAAGTQLQVHPNL 338 Query: 1215 HKELFNSQQIVGAKDPNRPFPSGQNETPLVKWRIQGMNESNLPLSVNCWPSVSGNETYVN 1394 K+ + S + K +P+P ++ ++KW++ E LP+S NCWP S + VN Sbjct: 339 DKKEWQSSSTLKIKPNGKPYPV-NSDVGILKWKMALSEEEQLPISFNCWPQESSDGVQVN 397 Query: 1395 IEYEAS-EMFDLNNVVISIPLPALREAPTVKQIDGEWKYDSRNSVLEWSIILIDQSNRSG 1571 IEY E LNNV I +PLP AP+V + DGE++Y +V+ WS+ +ID SN SG Sbjct: 398 IEYTLQREDITLNNVRIIVPLPT-ATAPSVGECDGEYEYHKTKNVIVWSLAVIDSSNSSG 456 Query: 1572 SMEFIVPPADPSTFFPISIGFGASNTFSDLKVTGIHPLKEGNPPKYSQRVRLVAANYQIV 1751 ++EF VP FFP+S+GF + N F + V + +G+P YS + N++IV Sbjct: 457 TLEFSVPNGHCDHFFPVSVGFTSENLFVPITVQKV-VKNDGSPVTYSVETTFNSENFEIV 515
>P43621:COPD_YEAST Coatomer subunit delta - Saccharomyces cerevisiae (Baker's yeast)| Length = 546 Score = 191 bits (486), Expect = 7e-48 Identities = 141/446 (31%), Positives = 225/446 (50%), Gaps = 22/446 (4%) Frame = +3 Query: 183 MVVLAASIISKSGKALVSRQYVDMSRIRIEGLLAAFPKLVGT-GKQHTYLETESVRYVYQ 359 MVVLAASI ++ GK L+SRQ+ D+S+ R+ LL+ F LV HT++E + VRYVY+ Sbjct: 1 MVVLAASITTRQGKPLLSRQFKDLSKDRVLELLSNFQNLVSEISSDHTFVEDKHVRYVYR 60 Query: 360 PIEGLYLLLITNKQSNILEDLDTLRLLSKLVPEY-SSLDEDSICKTAFELIFAFDEAISL 536 P + Y++LITN+QSNI++DL TL L S+ + Y SS + I AFE++ +FDE +S+ Sbjct: 61 PFDNYYIILITNRQSNIIKDLATLNLFSQTINSYLSSFQDQEIFHNAFEILSSFDEIVSM 120 Query: 537 GN-KENVTVQQVKQYCEMESHEEKAHKLMMQSKINETKDVMKKRASELDKIRMEKGKLDK 713 G KEN++ QV+ Y MESHEE+ +++ ++K E + K+RA E+ + E+ K Sbjct: 121 GGYKENLSFTQVQTYLSMESHEERIQEIIERNKEIEATEERKRRAKEIARKEHER----K 176 Query: 714 GGYSSISGPRVIEKTFGDMNIXXXXXXXXXXXXXXXXADMDSF---------ATKPKGRP 866 G+ S +G F A S+ P P Sbjct: 177 HGFMSSNGDYDGANRFMGSKDPNVTNAINSYYSHASPAAQQSYLQSSHAAAAEVAPVASP 236 Query: 867 SAAATAPGKGF--GMKLGKSQKTNQFLESLKAEGEVILEDVQXXXXXXXXXXXXXXXXIT 1040 A + G GMKLG + A + I Sbjct: 237 MATSQRAGHSATGGMKLGGGAGR----RAGAAPRPSAISSASSGTPPPPEEDVPENNGIL 292 Query: 1041 VTIEEKLNVVVKRDGGVNNFDVQGTLALQVLNDAD-GFIQLQI-ENKDV--PGLSFKTHP 1208 ++I+E +N RDG +++ +++G L L++ ND D L++ ++ DV FKTHP Sbjct: 293 ISIKEVINAEFSRDGTIHSSELKGVLELRI-NDHDLSHSNLKLADSIDVRDKSFQFKTHP 351 Query: 1209 NIHKELFNSQQIVGAKDPNRPFPSGQNETPLVKWR--IQGMNESNLPLSVNCW--PSVSG 1376 NI K+ F S +++ +D ++ FP+ +++WR ++S +PL++ W PS S Sbjct: 352 NIDKQSFLSTKLISLRDKSKAFPANDQSLGVLRWRKVAPAEDDSLIPLTLTTWVSPSESQ 411 Query: 1377 NETYVNIEYEASEMFDLNNVVISIPL 1454 V IEYE+ +L +V+ +IP+ Sbjct: 412 QGFDVIIEYESVLETELADVIFTIPV 437
>Q9HFE5:AP1M1_SCHPO AP-1 complex subunit mu-1 - Schizosaccharomyces pombe (Fission| yeast) Length = 426 Score = 42.0 bits (97), Expect = 0.009 Identities = 36/143 (25%), Positives = 67/143 (46%), Gaps = 4/143 (2%) Frame = +3 Query: 195 AASIISKSGKALVSRQY-VDMSRIRIEGLLAAFPKLVGT-GKQHTYLETESVRYVYQPIE 368 A +++ GK ++SR Y D+ +E L ++ G L E + Y+Y Sbjct: 4 AIFVLNLKGKVIISRDYRADIPMSVVEKFLPLKSEVEEEQGFSTPCLTHEGINYIYIHHN 63 Query: 369 GLYLLLITNKQSNILEDLDTLRLLSKLVPEY-SSLDEDSICKTAFELIF-AFDEAISLGN 542 +YLL ++ S+ +E L LR ++ + +Y L E+SI + F L++ DE + G Sbjct: 64 DVYLLALSKMNSDAMEMLVFLRKMADVFIDYFKELQEESI-RDNFVLVYELLDEIMDFGF 122 Query: 543 KENVTVQQVKQYCEMESHEEKAH 611 + + +++Y S+ K H Sbjct: 123 PQTTETKILQEYITQTSNTVKKH 145
>P54672:AP2M_DICDI AP-2 complex subunit mu - Dictyostelium discoideum (Slime mold)| Length = 439 Score = 40.8 bits (94), Expect = 0.021 Identities = 41/158 (25%), Positives = 76/158 (48%), Gaps = 6/158 (3%) Frame = +3 Query: 186 VVLAASIISKSGKALVSRQYVD-MSRIRIEGLLAAFPKLVGTGKQHTYLETE---SVRYV 353 ++ A +++ G+ L+SR Y D +SR G+ AF +L G Q T + S ++ Sbjct: 1 MISALFLMNGKGEVLISRIYRDDISR----GVGNAF-RLEVIGVQETRSPVKLIGSTSFM 55 Query: 354 YQPIEGLYLLLITNKQSNILEDLDTLRLLSKLVPEY-SSLDEDSICKTAFELIF-AFDEA 527 Y + +Y++ ++ + N + L L + Y +LDEDSI + F L++ DE Sbjct: 56 YIKVGNIYIVGVSRQNVNACMVFEVLHQLVDIFKSYFDNLDEDSI-RNNFVLVYELLDEI 114 Query: 528 ISLGNKENVTVQQVKQYCEMESHEEKAHKLMMQSKINE 641 + G +N + +K Y + K+ + Q KI++ Sbjct: 115 LDFGYPQNCSTDVLKLYITQGQGKLKSLDKLKQDKISK 152
>Q9WVP1:AP1M2_MOUSE AP-1 complex subunit mu-2 - Mus musculus (Mouse)| Length = 423 Score = 39.3 bits (90), Expect = 0.061 Identities = 44/182 (24%), Positives = 80/182 (43%), Gaps = 13/182 (7%) Frame = +3 Query: 1035 ITVTIEEKLNVVVKRDGGVNNFDVQGTLALQV-----------LNDADGF-IQLQIENKD 1178 + + + E +N++V +G V ++ GT+ L+V LND F + + +NK Sbjct: 171 VFIDVIESVNLLVNANGSVLLSEIVGTIKLKVFLSGMPELRLGLNDRVLFELTGRSKNKS 230 Query: 1179 VPGLSFKTHPNIHKELFNSQQIVGAKDPNRPFPSGQNETPLVKWRIQGMNESNLPL-SVN 1355 V K H + F++ + + P+ F L+ +R+ + + + SV Sbjct: 231 VELEDVKFHQCVRLSRFDNDRTISFIPPDGDFE-------LMSYRLSTQVKPLIWIESVI 283 Query: 1356 CWPSVSGNETYVNIEYEASEMFDLNNVVISIPLPALREAPTVKQIDGEWKYDSRNSVLEW 1535 S S E V + + + N V IS+P+P+ ++P K G KY +V+ W Sbjct: 284 EKFSHSRVEIMVKAKGQFKKQSVANGVEISVPVPSDADSPRFKTSVGSAKYVPEKNVVIW 343 Query: 1536 SI 1541 SI Sbjct: 344 SI 345
>Q9Y6Q5:AP1M2_HUMAN AP-1 complex subunit mu-2 - Homo sapiens (Human)| Length = 423 Score = 39.3 bits (90), Expect = 0.061 Identities = 44/182 (24%), Positives = 80/182 (43%), Gaps = 13/182 (7%) Frame = +3 Query: 1035 ITVTIEEKLNVVVKRDGGVNNFDVQGTLALQV-----------LNDADGF-IQLQIENKD 1178 + + + E +N++V +G V ++ GT+ L+V LND F + + +NK Sbjct: 171 VFIDVIESVNLLVNANGSVLLSEIVGTIKLKVFLSGMPELRLGLNDRVLFELTGRSKNKS 230 Query: 1179 VPGLSFKTHPNIHKELFNSQQIVGAKDPNRPFPSGQNETPLVKWRIQGMNESNLPL-SVN 1355 V K H + F++ + + P+ F L+ +R+ + + + SV Sbjct: 231 VELEDVKFHQCVRLSRFDNDRTISFIPPDGDFE-------LMSYRLSTQVKPLIWIESVI 283 Query: 1356 CWPSVSGNETYVNIEYEASEMFDLNNVVISIPLPALREAPTVKQIDGEWKYDSRNSVLEW 1535 S S E V + + + N V IS+P+P+ ++P K G KY +V+ W Sbjct: 284 EKFSHSRVEIMVKAKGQFKKQSVANGVEISVPVPSDADSPRFKTSVGSAKYVPERNVVIW 343 Query: 1536 SI 1541 SI Sbjct: 344 SI 345
>Q61595:KTN1_MOUSE Kinectin - Mus musculus (Mouse)| Length = 1327 Score = 37.4 bits (85), Expect = 0.23 Identities = 29/113 (25%), Positives = 59/113 (52%), Gaps = 6/113 (5%) Frame = +3 Query: 396 KQSNILEDLDTLRLLSKLVPEYSSLDEDSICKTAFELIFAFDEAISLGNKENVTVQQVKQ 575 KQS+ + + + L +++ E +D K+ EL+ E + + NKE TVQ +KQ Sbjct: 788 KQSDQVSFVSLIEDLKRVIHE-----KDGQIKSVEELLEV--ELLKVANKEK-TVQALKQ 839 Query: 576 YCEMESHE------EKAHKLMMQSKINETKDVMKKRASELDKIRMEKGKLDKG 716 E+ E EKAH+L + S++ E +++++ + +++ ++ D+G Sbjct: 840 EIEVLKEEIGNAQLEKAHQLSVTSQVQELQNLLRGKEEQVNSMKAALEDRDRG 892
>Q9BXS5:AP1M1_HUMAN AP-1 complex subunit mu-1 - Homo sapiens (Human)| Length = 423 Score = 37.0 bits (84), Expect = 0.30 Identities = 42/188 (22%), Positives = 77/188 (40%), Gaps = 19/188 (10%) Frame = +3 Query: 1035 ITVTIEEKLNVVVKRDGGVNNFDVQGTLALQVLNDADGFIQLQI------------ENKD 1178 + + + E +N++V +G V ++ G++ ++V ++L + ++K Sbjct: 171 VFLDVIESVNLLVSANGNVLRSEIVGSIKMRVFLSGMPELRLGLNDKVLFDNTGRGKSKS 230 Query: 1179 VPGLSFKTHPNIHKELFNSQQIVGAKDPNRPFPSGQNETPLVKWRIQGMNESNLPLSVNC 1358 V K H + F + + + P+ F L+ +R+ N + Sbjct: 231 VELEDVKFHQCVRLSRFENDRTISFIPPDGEFE-------LMSYRL------NTHVKPLI 277 Query: 1359 W-PSVSGNETYVNIEY--EASEMFD----LNNVVISIPLPALREAPTVKQIDGEWKYDSR 1517 W SV ++ IEY +A F NNV I IP+P ++P K G K+ Sbjct: 278 WIESVIEKHSHSRIEYMIKAKSQFKRRSTANNVEIHIPVPNDADSPKFKTTVGSVKWVPE 337 Query: 1518 NSVLEWSI 1541 NS + WSI Sbjct: 338 NSEIVWSI 345
>Q2KJ81:AP1M1_BOVIN AP-1 complex subunit mu-1 - Bos taurus (Bovine)| Length = 423 Score = 37.0 bits (84), Expect = 0.30 Identities = 42/188 (22%), Positives = 77/188 (40%), Gaps = 19/188 (10%) Frame = +3 Query: 1035 ITVTIEEKLNVVVKRDGGVNNFDVQGTLALQVLNDADGFIQLQI------------ENKD 1178 + + + E +N++V +G V ++ G++ ++V ++L + ++K Sbjct: 171 VFLDVIESVNLLVSANGNVLRSEIVGSIKMRVFLSGMPELRLGLNDKVLFDNTGRGKSKS 230 Query: 1179 VPGLSFKTHPNIHKELFNSQQIVGAKDPNRPFPSGQNETPLVKWRIQGMNESNLPLSVNC 1358 V K H + F + + + P+ F L+ +R+ N + Sbjct: 231 VELEDVKFHQCVRLSRFENDRTISFIPPDGEFE-------LMSYRL------NTHVKPLI 277 Query: 1359 W-PSVSGNETYVNIEY--EASEMFD----LNNVVISIPLPALREAPTVKQIDGEWKYDSR 1517 W SV ++ IEY +A F NNV I IP+P ++P K G K+ Sbjct: 278 WIESVIEKHSHSRIEYMIKAKSQFKRRSTANNVEIHIPVPNDADSPKFKTTVGSVKWVPE 337 Query: 1518 NSVLEWSI 1541 NS + WSI Sbjct: 338 NSEIVWSI 345
>Q32Q06:AP1M1_RAT AP-1 complex subunit mu-1 - Rattus norvegicus (Rat)| Length = 423 Score = 36.6 bits (83), Expect = 0.40 Identities = 42/188 (22%), Positives = 77/188 (40%), Gaps = 19/188 (10%) Frame = +3 Query: 1035 ITVTIEEKLNVVVKRDGGVNNFDVQGTLALQVLNDADGFIQLQI------------ENKD 1178 + + + E +N++V +G V ++ G++ ++V ++L + ++K Sbjct: 171 VFLDVIEAVNLLVSANGNVLRSEIVGSIKMRVFLSGMPELRLGLNDKVLFDNTGRGKSKS 230 Query: 1179 VPGLSFKTHPNIHKELFNSQQIVGAKDPNRPFPSGQNETPLVKWRIQGMNESNLPLSVNC 1358 V K H + F + + + P+ F L+ +R+ N + Sbjct: 231 VELEDVKFHQCVRLSRFENDRTISFIPPDGEFE-------LMSYRL------NTHVKPLI 277 Query: 1359 W-PSVSGNETYVNIEY--EASEMFD----LNNVVISIPLPALREAPTVKQIDGEWKYDSR 1517 W SV ++ IEY +A F NNV I IP+P ++P K G K+ Sbjct: 278 WIESVIEKHSHSRIEYMVKAKSQFKRRSTANNVEIHIPVPNDADSPKFKTTVGSVKWVPE 337 Query: 1518 NSVLEWSI 1541 NS + WSI Sbjct: 338 NSEIVWSI 345
>Q3SYW1:AP1M2_BOVIN AP-1 complex subunit mu-2 - Bos taurus (Bovine)| Length = 423 Score = 36.2 bits (82), Expect = 0.52 Identities = 42/182 (23%), Positives = 79/182 (43%), Gaps = 13/182 (7%) Frame = +3 Query: 1035 ITVTIEEKLNVVVKRDGGVNNFDVQGTLALQV-----------LNDADGF-IQLQIENKD 1178 + + + E +N++V +G V ++ G++ L+V LND F + + +NK Sbjct: 171 VFIDVIESVNLLVNANGSVLLSEIVGSIKLKVFLSGMPELRLGLNDRVLFELTGRSKNKS 230 Query: 1179 VPGLSFKTHPNIHKELFNSQQIVGAKDPNRPFPSGQNETPLVKWRIQGMNESNLPL-SVN 1355 V K H + F++ + + P+ F L+ +R+ + + + SV Sbjct: 231 VELEDVKFHQCVRLSRFDNDRTISFIPPDGDFE-------LMSYRLSTQVKPLIWIESVI 283 Query: 1356 CWPSVSGNETYVNIEYEASEMFDLNNVVISIPLPALREAPTVKQIDGEWKYDSRNSVLEW 1535 S S E V + + + N V IS+P+P+ ++P K G KY + + W Sbjct: 284 EKFSHSRVEIMVKAKGQFKKQSVANGVEISVPVPSDADSPRFKTSVGSAKYVPEKNTVIW 343 Query: 1536 SI 1541 SI Sbjct: 344 SI 345
>P35585:AP1M1_MOUSE AP-1 complex subunit mu-1 - Mus musculus (Mouse)| Length = 423 Score = 36.2 bits (82), Expect = 0.52 Identities = 41/188 (21%), Positives = 77/188 (40%), Gaps = 19/188 (10%) Frame = +3 Query: 1035 ITVTIEEKLNVVVKRDGGVNNFDVQGTLALQVLNDADGFIQLQI------------ENKD 1178 + + + E +N++V +G V ++ G++ ++V ++L + ++K Sbjct: 171 VFLDVIEAVNLLVSANGNVLRSEIVGSIKMRVFLSGMPELRLGLNDKVLFDNTGRGKSKS 230 Query: 1179 VPGLSFKTHPNIHKELFNSQQIVGAKDPNRPFPSGQNETPLVKWRIQGMNESNLPLSVNC 1358 V K H + F + + + P+ F L+ +R+ N + Sbjct: 231 VELEDVKFHQCVRLSRFENDRTISFIPPDGEFE-------LMSYRL------NTHVKPLI 277 Query: 1359 W-PSVSGNETYVNIEY--EASEMFD----LNNVVISIPLPALREAPTVKQIDGEWKYDSR 1517 W SV ++ IEY +A F NNV I IP+P ++P K G K+ Sbjct: 278 WIESVIEKHSHSRIEYMVKAKSQFKRRSTANNVEIHIPVPNDADSPKFKTTVGSVKWVPE 337 Query: 1518 NSVLEWSI 1541 NS + WS+ Sbjct: 338 NSEIVWSV 345
>Q8RKI9:TARI_BACSU Putative ribitol-5-phosphate cytidylyltransferase - Bacillus| subtilis Length = 237 Score = 35.8 bits (81), Expect = 0.68 Identities = 23/75 (30%), Positives = 41/75 (54%) Frame = +3 Query: 540 NKENVTVQQVKQYCEMESHEEKAHKLMMQSKINETKDVMKKRASELDKIRMEKGKLDKGG 719 NK + + V+++ + +K + + IN TKD++KK + D++ + +G D+ Sbjct: 28 NKRPIIIHTVEKFL-LNDRFDKILIVSPKEWINHTKDILKKFIGQDDRLVVVEGGSDR-N 85 Query: 720 YSSISGPRVIEKTFG 764 S +SG R IEK FG Sbjct: 86 ESIMSGIRYIEKEFG 100
>Q9DB50:AP1S2_MOUSE AP-1 complex subunit sigma-2 - Mus musculus (Mouse)| Length = 160 Score = 35.4 bits (80), Expect = 0.89 Identities = 29/116 (25%), Positives = 54/116 (46%), Gaps = 8/116 (6%) Frame = +3 Query: 204 IISKSGKALVSRQYVDMS--------RIRIEGLLAAFPKLVGTGKQHTYLETESVRYVYQ 359 + S+ GK + + YV +S R ++ +LA PK+ ++LE ++ VY+ Sbjct: 6 LFSRQGKLRLQKWYVPLSDKEKKKITRELVQTVLARKPKMC------SFLEWRDLKIVYK 59 Query: 360 PIEGLYLLLITNKQSNILEDLDTLRLLSKLVPEYSSLDEDSICKTAFELIFAFDEA 527 LY Q N L L+ + +L+ +Y S+C+ ++IF F++A Sbjct: 60 RYASLYFCCAIEDQDNELITLEIIHRYVELLDKYFG----SVCE--LDIIFNFEKA 109
>P56377:AP1S2_HUMAN AP-1 complex subunit sigma-2 - Homo sapiens (Human)| Length = 157 Score = 35.4 bits (80), Expect = 0.89 Identities = 29/116 (25%), Positives = 54/116 (46%), Gaps = 8/116 (6%) Frame = +3 Query: 204 IISKSGKALVSRQYVDMS--------RIRIEGLLAAFPKLVGTGKQHTYLETESVRYVYQ 359 + S+ GK + + YV +S R ++ +LA PK+ ++LE ++ VY+ Sbjct: 6 LFSRQGKLRLQKWYVPLSDKEKKKITRELVQTVLARKPKMC------SFLEWRDLKIVYK 59 Query: 360 PIEGLYLLLITNKQSNILEDLDTLRLLSKLVPEYSSLDEDSICKTAFELIFAFDEA 527 LY Q N L L+ + +L+ +Y S+C+ ++IF F++A Sbjct: 60 RYASLYFCCAIEDQDNELITLEIIHRYVELLDKYFG----SVCE--LDIIFNFEKA 109
>Q09718:AP2M_SCHPO AP-2 complex subunit mu - Schizosaccharomyces pombe (Fission yeast)| Length = 446 Score = 35.0 bits (79), Expect = 1.2 Identities = 24/111 (21%), Positives = 49/111 (44%), Gaps = 1/111 (0%) Frame = +3 Query: 297 LVGTGKQHTYLETESVRYVYQPIEGLYLLLITNKQSNILEDLDTLR-LLSKLVPEYSSLD 473 L T +H + S Y+Y E LY++ IT N++ L+ L L+ L + L+ Sbjct: 37 LTNTDYRHPIVSIGSSTYIYTKHEDLYVVAITKGNPNVMIVLEFLESLIQDLTHYFGKLN 96 Query: 474 EDSICKTAFELIFAFDEAISLGNKENVTVQQVKQYCEMESHEEKAHKLMMQ 626 E+++ + DE I G + + + + + ++K + L ++ Sbjct: 97 ENTVKDNVSFIFELLDEMIDYGIIQTTEPDALARSVSITAVKKKGNALSLK 147
>Q58556:Y1156_METJA Cell division cycle protein 48 homolog MJ1156 - Methanococcus| jannaschii Length = 903 Score = 33.9 bits (76), Expect = 2.6 Identities = 28/112 (25%), Positives = 53/112 (47%) Frame = +3 Query: 372 LYLLLITNKQSNILEDLDTLRLLSKLVPEYSSLDEDSICKTAFELIFAFDEAISLGNKEN 551 L + I + N+ ED++ L L+K Y+ D +++C+ A L A E+I Sbjct: 627 LDIFKIHTRSMNLAEDVN-LEELAKKTEGYTGADIEALCREAAML--AVRESIGKPWDIE 683 Query: 552 VTVQQVKQYCEMESHEEKAHKLMMQSKINETKDVMKKRASELDKIRMEKGKL 707 V ++++ Y + S +A + + S I TK+ A E +++ GK+ Sbjct: 684 VKLRELINYLQSISGTFRAAAVELNSVIKATKERESAEAGEFSELKNAIGKI 735
>Q86UP2:KTN1_HUMAN Kinectin - Homo sapiens (Human)| Length = 1357 Score = 33.9 bits (76), Expect = 2.6 Identities = 28/104 (26%), Positives = 54/104 (51%), Gaps = 6/104 (5%) Frame = +3 Query: 396 KQSNILEDLDTLRLLSKLVPEYSSLDEDSICKTAFELIFAFDEAISLGNKENVTVQQVKQ 575 KQ++ + + L K++ E +D K+ EL+ A E + + NKE TVQ +KQ Sbjct: 785 KQNDQVSFASLVEELKKVIHE-----KDGKIKSVEELLEA--ELLKVANKEK-TVQDLKQ 836 Query: 576 YCEMESHE------EKAHKLMMQSKINETKDVMKKRASELDKIR 689 + E EKA +L + SK+ E ++++K + +++ ++ Sbjct: 837 EIKALKEEIGNVQLEKAQQLSITSKVQELQNLLKGKEEQMNTMK 880
>O16867:TAP_DROME Basic helix-loop-helix neural transcription factor TAP - Drosophila| melanogaster (Fruit fly) Length = 398 Score = 33.5 bits (75), Expect = 3.4 Identities = 15/62 (24%), Positives = 34/62 (54%) Frame = +3 Query: 393 NKQSNILEDLDTLRLLSKLVPEYSSLDEDSICKTAFELIFAFDEAISLGNKENVTVQQVK 572 N+ N+ + L+ LR+ +PE + L + I + A IFA ++ + G N+ +++++ Sbjct: 165 NRMHNLNDALEKLRVTLPSLPEETKLTKIEILRFAHNYIFALEQVLESGGSINLDLEKLQ 224 Query: 573 QY 578 + Sbjct: 225 NF 226
>Q9W4E2:NBEA_DROME Protein neurobeachin - Drosophila melanogaster (Fruit fly)| Length = 3584 Score = 33.5 bits (75), Expect = 3.4 Identities = 30/117 (25%), Positives = 53/117 (45%) Frame = +1 Query: 196 LLPSSRNLEKHLFQDNMLTCPGLGLKGYLQHSRNLLELGSSTLILRLKAFVMFINLLKAY 375 L+ +S+ +++H+ Q+ +G+L S L SS L L+ F+NL K Sbjct: 563 LVETSQTVQQHMIQN----------RGFLVISFMLQR--SSREHLTLEVLGSFLNLTKYL 610 Query: 376 ICCLSQTSRVIFLKIWTH*GYYPSLCLNTRLWMRIVSVKQHLSLYLHLTKQSLSETR 546 + CLS S ++ ++ H + N LW+ LY +L + LS+T+ Sbjct: 611 VTCLSANSDLLLKQLLDH------VLFNPALWI-YTPANVQARLYSYLATEFLSDTQ 660
>Q97GM6:MUTS2_CLOAB MutS2 protein - Clostridium acetobutylicum| Length = 788 Score = 32.7 bits (73), Expect = 5.7 Identities = 38/153 (24%), Positives = 71/153 (46%), Gaps = 11/153 (7%) Frame = +3 Query: 327 LETESVRYVYQPIEGLYLLLI-TNKQSNILEDLDTLRLLSKLVPEY-SSLDEDSICKTAF 500 +E SV + + + Y LLI +SN E L L ++ E + +D++ F Sbjct: 460 VENASVEFDVETLRPTYRLLIGIPGKSNAFEISKRLGLSDYIIEEARKGISKDTL---EF 516 Query: 501 ELIFAFDEAISLGNKENVTVQQ-VKQYCEM--ESHEEKAHKLM------MQSKINETKDV 653 E + + S+ +EN+ + +K+ E E +EEK + + E K + Sbjct: 517 EDLIQNLQTRSVKAEENLRKAEFLKEQAEKFKEKYEEKVSSITETREKALHEGRREAKKI 576 Query: 654 MKKRASELDKIRMEKGKLDKGGYSSISGPRVIE 752 +++ SE DKI + ++++ GYSS + R+ E Sbjct: 577 IEEAKSEADKILKDMREMERLGYSSEARQRLQE 609
>O82859:BCSA2_ACEXY Cellulose synthase catalytic subunit [UDP-forming] - Acetobacter| xylinus (Gluconacetobacter xylinus) Length = 756 Score = 32.7 bits (73), Expect = 5.7 Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 4/61 (6%) Frame = +3 Query: 1329 ESNLPLSVNCWPSVSGNETYVNIEYEASEMFDLNNVVISIPLPALREAPTVKQI----DG 1496 E+++P++V P+ TY N + ++ + V + IPLP + P K+I DG Sbjct: 584 EAHIPVTVYDAPAEGQPHTYYNATHGMTQDVSMGGVAVHIPLPDVTTGPVKKRIHAVLDG 643 Query: 1497 E 1499 E Sbjct: 644 E 644
>Q8ZPN4:YDHK_SALTY Uncharacterized transporter ydhK - Salmonella typhimurium| Length = 679 Score = 32.3 bits (72), Expect = 7.5 Identities = 12/29 (41%), Positives = 18/29 (62%) Frame = +3 Query: 1440 ISIPLPALREAPTVKQIDGEWKYDSRNSV 1526 + + LPALR P K G+W+Y RN++ Sbjct: 1 MKLSLPALRNTPWFKATSGQWRYALRNTI 29
>Q8Z6P7:YDHK_SALTI Uncharacterized transporter ydhK - Salmonella typhi| Length = 679 Score = 32.3 bits (72), Expect = 7.5 Identities = 12/29 (41%), Positives = 18/29 (62%) Frame = +3 Query: 1440 ISIPLPALREAPTVKQIDGEWKYDSRNSV 1526 + + LPALR P K G+W+Y RN++ Sbjct: 1 MKLSLPALRNTPWFKATSGQWRYALRNTI 29
>P34703:SPT6H_CAEEL Suppressor of Ty 6 homolog - Caenorhabditis elegans| Length = 1521 Score = 32.3 bits (72), Expect = 7.5 Identities = 19/72 (26%), Positives = 38/72 (52%) Frame = +3 Query: 519 DEAISLGNKENVTVQQVKQYCEMESHEEKAHKLMMQSKINETKDVMKKRASELDKIRMEK 698 DE + L N EN +++ K+ ++ + ++ +E D++ +R S+ R ++ Sbjct: 94 DEDLDLIN-ENYDIRETKKQNRVQLGDSSDEDEPIRRPNHEDDDLLSERGSDDGDRRKDR 152 Query: 699 GKLDKGGYSSIS 734 G+ D+GGY S S Sbjct: 153 GRGDRGGYGSES 164
>Q7T2X6:BMP3B_XENLA Bone morphogenetic protein 3b precursor - Xenopus laevis (African| clawed frog) Length = 443 Score = 32.3 bits (72), Expect = 7.5 Identities = 28/112 (25%), Positives = 54/112 (48%), Gaps = 6/112 (5%) Frame = +3 Query: 456 EYSSLDEDSICKTAFELIFAFDEAISLGNKENVTVQQVKQYCEMESHEEKAHKLMMQSKI 635 +++++ E++ + + L+FA D AIS N +T+Q+ + + ++A +S++ Sbjct: 199 KFATVFENNPSELPYILVFADDRAISDPNSIALTLQRYDPFQPNGGNSKQAPNTFPESRV 258 Query: 636 -NETKDVMKKRASELDKI---RMEKGKLDKGGYSSI--SGPRVIEKTFGDMN 773 +T D+ +EL I R K L + Y S+ PR +K G N Sbjct: 259 KRDTSDLASSHDNELPDIKYMRYSKEDLWESTYKSLKHKSPRKEKKKKGQEN 310
>Q9Y7L6:AP2S_SCHPO AP-2 complex subunit sigma - Schizosaccharomyces pombe (Fission| yeast) Length = 143 Score = 32.0 bits (71), Expect = 9.8 Identities = 25/108 (23%), Positives = 49/108 (45%), Gaps = 3/108 (2%) Frame = +3 Query: 204 IISKSGKALVSRQYV---DMSRIRIEGLLAAFPKLVGTGKQHTYLETESVRYVYQPIEGL 374 I ++ GK +S+ YV D ++R++ + Q +LE E+ + VY+ GL Sbjct: 7 IQNRHGKNRLSKYYVPFDDDEKVRLKARIHQLISQRNQKFQANFLEWENSKLVYRRYAGL 66 Query: 375 YLLLITNKQSNILEDLDTLRLLSKLVPEYSSLDEDSICKTAFELIFAF 518 Y + N L L+ + +++ + ++C+ +LIF F Sbjct: 67 YFCFCVDSTDNDLAILEMIHFFVEILDSFFG----NVCE--LDLIFNF 108
>P35602:AP1M_CAEEL AP-1 complex subunit mu - Caenorhabditis elegans| Length = 422 Score = 32.0 bits (71), Expect = 9.8 Identities = 18/54 (33%), Positives = 26/54 (48%) Frame = +3 Query: 1428 NNVVISIPLPALREAPTVKQIDGEWKYDSRNSVLEWSIILIDQSNRSGSMEFIV 1589 NNV I IP+P+ ++P K G KY S W+I N G E+++ Sbjct: 307 NNVEIIIPVPSDADSPKFKTSIGSVKYTPEQSAFVWTI-----KNFPGGKEYLL 355 Database: uniprot_sprot.fasta.out Posted date: Jul 19, 2007 5:58 PM Number of letters in database: 100,686,439 Number of sequences in database: 274,295 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 274295 Number of Hits to DB: 333,158,460 Number of extensions: 7267172 Number of successful extensions: 19568 Number of sequences better than 10.0: 39 Number of HSP's gapped: 19502 Number of HSP's successfully gapped: 42 Length of query: 662 Length of database: 100,686,439 Length adjustment: 120 Effective length of query: 542 Effective length of database: 67,771,039 Effective search space: 36731903138 Effective search space used: 36731903138 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
