ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf13o12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1AK067831:Os08g0538600 674 0.0
2Os04g0419500:Os04g0419500 31 2.3
3AK064702: 31 2.9
4AK100757:Os04g0555000 31 2.9
5AK072188:Os09g0537100 29 8.6

>AK067831:Os08g0538600 |
          Length = 424
 Score =  674 bits (1739), Expect = 0.0
 Identities = 309/406 (76%), Positives = 352/406 (86%), Gaps = 1/406 (0%)
 Frame = +3

Query: 159  PLTSEALNVRGHLLKSKTFRSPPILLGPGSVSNKYYHDVDFPRGHLAVKSFDAEVVDENG 338
            PL  EALNVRGHLLKSKTF SP   L PGSVSNK+Y+DV FPRGHLA+KSF+AEVVDENG
Sbjct: 19   PLPLEALNVRGHLLKSKTFLSPAFFLHPGSVSNKFYYDVPFPRGHLALKSFNAEVVDENG 78

Query: 339  VPVPLHETYLHHWVAVPYYALKKSQSSDAQKVP-AMIKGNDGVCKRSLTQYFGLGSETRH 515
            VPVPLH+TYLHHWV  PYYALK S S+DAQK+P  +I  N GVCK++L QY+GLGSETRH
Sbjct: 79   VPVPLHDTYLHHWVVEPYYALKNSDSADAQKLPKGIIARNSGVCKKTLGQYYGLGSETRH 138

Query: 516  TATWVPDPYGIETGNQEKAPEGYEEKWLLNIHAIDTRGVVDKPSCTECKCDSYNVTIDEY 695
            TATWVPDPYGIE GN EK PEGYEEKWL+N+HAIDTRG +DK  CTECKCD YN+TIDEY
Sbjct: 139  TATWVPDPYGIEIGNPEKPPEGYEEKWLINVHAIDTRGAIDKLGCTECKCDLYNMTIDEY 198

Query: 696  GRTVSKNYTGGLLCCYDQTQCQLKEGFNGEVRTVFLQYTVTWLDWTDAVVPVKIYIFDVT 875
            GR + K+Y GGL CCYD+TQC++KEGFNGE+R +FL+YTVTWLDW+DAVVPVKIYIFDVT
Sbjct: 199  GRKLPKDYIGGLYCCYDETQCKVKEGFNGELRKLFLRYTVTWLDWSDAVVPVKIYIFDVT 258

Query: 876  DTAMLDGIHERSCKVEYQVEECSTENRANNECIHTKTTRAVLPRGGDIVYSVAHQHSGGV 1055
            DT+  D     +CKVEYQVEECS ENRA NECI  K T+ V+P GGDIV+ VAHQHSGG+
Sbjct: 259  DTSPPDEKSGTACKVEYQVEECSPENRAKNECIDVKVTKEVIPCGGDIVFGVAHQHSGGI 318

Query: 1056 GASLHGQDGRLLCESLPTYGTGKEAGNEANYIVGMSSCYPKPGSIKVSDGEVLTIVSNYS 1235
            GASLHGQDGRLLC S+P+YG G+EAGNE NYIVGMS+CYPKPGS+KVSDGEVLT+VSNYS
Sbjct: 319  GASLHGQDGRLLCASIPSYGKGEEAGNEDNYIVGMSTCYPKPGSVKVSDGEVLTVVSNYS 378

Query: 1236 STREHTGVMGLVYILVAEPQQPAPAPSLCFSFPAPWCLPAWMSGNM 1373
            S R+HTGVMGL+YILVAE +QPAP P+LCFSFP PWCLP W++ N+
Sbjct: 379  SDRQHTGVMGLLYILVAEQEQPAPKPALCFSFPVPWCLPTWLTSNL 424



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>Os04g0419500:Os04g0419500 |
          Length = 431

 Score = 31.2 bits (69), Expect = 2.3
 Identities = 18/67 (26%), Positives = 29/67 (43%)
 Frame = +1

Query: 832  LTRWCLSRSTYLTLRIPPCWMEFMNALARLSIKSRNAARKTEPTTSASILRPLERSCRVE 1011
            + RW L+RST      P C      A  + S  S +   + EP  +  +L PL       
Sbjct: 265  IDRWLLARST-----CPTCRQSLFGAPQKASGCSESEGSQAEPAPARPVLAPLRPEGVTA 319

Query: 1012 EISCTVL 1032
            +++CT +
Sbjct: 320  KLACTAV 326



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>AK064702: |
          Length = 158

 Score = 30.8 bits (68), Expect = 2.9
 Identities = 15/31 (48%), Positives = 15/31 (48%), Gaps = 3/31 (9%)
 Frame = -2

Query: 1120 PVP*VGSDSHRRRPSWPCREA---PTPPECW 1037
            P P   S S RRR SW CR     P PP  W
Sbjct: 111  PPPPPPSSSRRRRRSWRCRRVLPPPPPPRSW 141



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>AK100757:Os04g0555000 |
          Length = 711

 Score = 30.8 bits (68), Expect = 2.9
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +3

Query: 1242 REHTGVMGLVYILVAEPQQPAPAPSLCFSFP 1334
            + H  V   +++L  +PQ P PAP+ C  FP
Sbjct: 287  KRHHSVPDNLFLLHNQPQPPPPAPAQCLPFP 317



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>AK072188:Os09g0537100 |
          Length = 117

 Score = 29.3 bits (64), Expect = 8.6
 Identities = 24/73 (32%), Positives = 35/73 (47%)
 Frame = -3

Query: 840 PRQSSRAKSRCTARTPSAPRH*TLP*ADTGSDHSSKATHQCSSSRLCAHTHRL*RCKSRT 661
           P  +S      TA TP AP   T+P   + +  +S +T +  S+ L    HRL  C++ T
Sbjct: 49  PASTSPTARSSTAPTPQAP---TVPLPASSTLSTSPSTAR--SAPLLPRLHRLSSCRTST 103

Query: 660 CTRCS*ACRPRPS 622
            TR      P+PS
Sbjct: 104 MTRLR-LSTPKPS 115


  Database: orf_amino.fa.out
    Posted date:  Jul 26, 2007 11:37 AM
  Number of letters in database: 15,399,855
  Number of sequences in database:  40,041
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 40041
Number of Hits to DB: 47,164,557
Number of extensions: 1143634
Number of successful extensions: 3362
Number of sequences better than 10.0: 5
Number of HSP's gapped: 3358
Number of HSP's successfully gapped: 5
Length of query: 550
Length of database: 15,399,855
Length adjustment: 106
Effective length of query: 444
Effective length of database: 11,155,509
Effective search space: 4953045996
Effective search space used: 4953045996
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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