>P26377:STP2_BOVIN Nuclear transition protein 2 - Bos taurus (Bovine)|
          Length = 132
 Score = 32.3 bits (72), Expect = 6.0
 Identities = 37/121 (30%), Positives = 45/121 (37%), Gaps = 11/121 (9%)
 Frame = -3

Query: 801 RTPSAPRH*TLP*ADTGSDHSSKATHQCSSSRLCAHTHRL*RCKSRTCTRCS*ACRPRPS 622
           +T S P     P   + S   S A H CS S+ C    R   C+SR+ +R     RPR  
Sbjct: 4   KTQSLPNTHAQP--HSNSRPQSHACHHCSCSQHCQSRSRSRSCRSRSSSR-----RPR-- 54

Query: 621 CRWHGY*ATISPHSLQGPSLG-------CRSQFHKDQEP----MWRCGESRNRARSTGLV 475
                  +  SP   QG S G        R   H  Q P       C  S+NR    G V
Sbjct: 55  -------SHRSPTGRQGQSPGPSPPLRRHRHTMHSHQCPSRPVTHSCSHSKNRKNLEGKV 107

Query: 474 I 472
           I
Sbjct: 108 I 108

>Q66PY1:SCUB3_MOUSE Signal peptide, CUB and EGF-like domain-containing protein 3|
            precursor - Mus musculus (Mouse)
          Length = 993

 Score = 32.3 bits (72), Expect = 6.0
 Identities = 15/47 (31%), Positives = 27/47 (57%)
 Frame = +3

Query: 897  IHERSCKVEYQVEECSTENRANNECIHTKTTRAVLPRGGDIVYSVAH 1037
            I+ERSC+    ++ECS +   ++ C++T  +   L   G ++Y V H
Sbjct: 311  INERSCQ---DIDECSFDRTCDHMCVNTPGSFQCLCHRGYLLYGVTH 354

>P52591:PO121_RAT Nuclear envelope pore membrane protein POM 121 - Rattus norvegicus|
            (Rat)
          Length = 1199

 Score = 32.0 bits (71), Expect = 7.9
 Identities = 27/85 (31%), Positives = 39/85 (45%), Gaps = 2/85 (2%)
 Frame = -2

Query: 1225 ETMVSTSPSLTLMDPGLG*QLDMPTM*FASFPASFPVP*VGS--DSHRRRPSWPCREAPT 1052
            +T  +TSP  TL          +PT+  A+ PAS P P      +S ++    P   +  
Sbjct: 539  DTSPATSPPFTLT---------LPTVGPAASPASLPAPSSNPLLESLKKMQESPAPSSSE 589

Query: 1051 PPECWCATLYTISPPRGKTALVVLV 977
            PPE   AT+   SPP+  + L  LV
Sbjct: 590  PPE--AATVAAPSPPKTPSLLAPLV 612

>P21866:KDPE_ECOLI KDP operon transcriptional regulatory protein kdpE - Escherichia|
           coli
          Length = 225

 Score = 32.0 bits (71), Expect = 7.9
 Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 8/66 (12%)
 Frame = +3

Query: 366 LHHWVAVPYYALKKSQSSDAQKVPAMIKGNDGVCKRSLTQYFGLG--------SETRHTA 521
           L  W AVP   L  ++S ++ K+ A+  G D      L++ FG+G        +  RH+A
Sbjct: 67  LRQWSAVPVIVLS-ARSEESDKIAALDAGADDY----LSKPFGIGELQARLRVALRRHSA 121

Query: 522 TWVPDP 539
           T  PDP
Sbjct: 122 TTAPDP 127


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 279,261,809
Number of extensions: 6273413
Number of successful extensions: 16766
Number of sequences better than 10.0: 4
Number of HSP's gapped: 16756
Number of HSP's successfully gapped: 4
Length of query: 550
Length of database: 100,686,439
Length adjustment: 118
Effective length of query: 432
Effective length of database: 68,319,629
Effective search space: 29514079728
Effective search space used: 29514079728
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)