| Clone Name | FLbaf13o12 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_001068906.1| Oryza sativa (japonica cultivar-group) Os08g0538600 (Os08g0538600) mRNA, complete cds Length = 1718 Score = 208 bits (105), Expect = 5e-50 Identities = 321/393 (81%) Strand = Plus / Plus Query: 482 ccagtacttcgggctcggttccgagactcgccacaccgccacatgggttcctgatcctta 541 |||||||| ||| || ||||| ||||||||||| || ||||||||||| ||||||||||| Sbjct: 428 ccagtactacggccttggttctgagactcgccatactgccacatgggtacctgatcctta 487 Query: 542 tggaattgagaccggcaaccaagagaaggcccctgaaggctatgaggagaaatggttgct 601 || || |||| || || | |||||| |||||||||| |||||||||||||||||| | Sbjct: 488 cggcatagagattggtaatccggagaagccccctgaaggatatgaggagaaatggttgat 547 Query: 602 caatatccatgccatcgacacgaggggcgtggtcgacaagcctagctgcaccgagtgcaa 661 |||| | |||||||| ||||| ||||| | | ||||||||| | ||||| |||||||| Sbjct: 548 caatgtgcatgccattgacacaaggggtgcgatcgacaagctaggatgcactgagtgcaa 607 Query: 662 gtgcgactcttacaacgtcacaatcgatgagtatgggcgcacagtctcgaagaactacac 721 ||| || ||||||| | || ||||| ||||||||||||| | || | ||| |||||| Sbjct: 608 gtgtgatctttacaacatgacgatcgacgagtatgggcgcaaactcccaaaggactacat 667 Query: 722 tggtgggttgctttgctgctatgatcagacccagtgtcagctcaaggaagggttcaatgg 781 |||||| || ||||||||||||| |||| ||||| || | |||||||| ||||| || Sbjct: 668 tggtggtttatattgctgctatgatgagacgcagtgcaaggttaaggaaggtttcaacgg 727 Query: 782 cgaggtgcggacggtgttcttgcagtacaccgtgacttggctcgactggactgacgcggt 841 ||| | |||| | ||||||||| |||||| ||||| ||||| ||||||| ||| ||||| Sbjct: 728 tgagctacggaagctgttcttgcggtacactgtgacgtggcttgactggagtgatgcggt 787 Query: 842 ggtgcctgtcaagatctacatatttgacgttac 874 ||||| |||||||| ||||||||||| ||||| Sbjct: 788 tgtgccagtcaagatttacatatttgatgttac 820 Score = 161 bits (81), Expect = 1e-35 Identities = 285/353 (80%) Strand = Plus / Plus Query: 1006 gtggaggagatatcgtgtacagtgttgcgcaccagcactctggaggagtcggtgcttctc 1065 ||||||| |||||||||| |||| ||||| ||||| || || ||| | ||||| ||| Sbjct: 952 gtggaggcgatatcgtgtttggtgtcgcgcatcagcattcaggtggaattggtgcctctt 1011 Query: 1066 tgcatggccaggatggacgccttctatgtgaatcgcttccaacttacggcacagggaagg 1125 | || |||||||||||||| || || |||| |||| |||| | || |||| ||| | | Sbjct: 1012 tacacggccaggatggacgtctgctttgtgcatcgattccgagctatggcaagggggaag 1071 Query: 1126 aggcagggaacgaggcgaactacatcgtcggcatgtcgagttgctaccctaagccaggat 1185 |||| || || || | |||||||||||||||||||| | |||||||| ||||| |||| Sbjct: 1072 aggctggcaatgaagataactacatcgtcggcatgtcaacatgctacccgaagccgggat 1131 Query: 1186 ccatcaaggtcagcgacggcgaggtgctgaccatcgtctccaactacagcagcacccgcg 1245 | |||||||||| || ||||||||||||||| ||||||||||||||||||| |||| Sbjct: 1132 cagtcaaggtcagtgatggcgaggtgctgaccgtcgtctccaactacagcagtgaccgcc 1191 Query: 1246 agcacaccggcgtcatgggcctggtctacatcctcgtggccgagccgcagcagccggctc 1305 ||||||||||||||||||||||| |||||||||| || || |||| | ||||| |||| Sbjct: 1192 agcacaccggcgtcatgggcctgctctacatccttgttgcagagcaagaacagccagctc 1251 Query: 1306 cggcgccatccctgtgcttcagtttcccggccccatggtgcctaccggcatgg 1358 | ||| | ||||||||||| ||||||| ||||||||| ||||| ||||| Sbjct: 1252 ccaagcctgctctgtgcttcagcttcccggttccatggtgcttaccgacatgg 1304 Score = 159 bits (80), Expect = 4e-35 Identities = 191/228 (83%) Strand = Plus / Plus Query: 171 gaagccctcaacgtgagaggccatctgctgaaatcaaagacgttccgttctccgcccatc 230 ||||| ||||| || ||||||||||| |||||||| ||||| || | |||||| | || Sbjct: 114 gaagctctcaatgtaagaggccatctactgaaatccaagacatttctgtctccggcattc 173 Query: 231 ttactgggccctggatcggtctcaaacaagtactaccatgatgtcgacttcccccgaggc 290 || ||| ||||||||| || |||||||||| |||| |||||||| |||||| ||||| Sbjct: 174 ttcctgcaccctggatcagtttcaaacaagttctactatgatgtccccttccctagaggc 233 Query: 291 caccttgcagtcaagagctttgatgcagaggtcgtcgatgagaacggggtccctgtcccg 350 |||||||| ||||||||||| |||| || ||||| || ||||| || |||||||| ||| Sbjct: 234 caccttgctctcaagagctttaatgctgaagtcgtagacgagaatggcgtccctgttccg 293 Query: 351 ctccatgagacttacctgcatcactgggttgcagtaccatactatgct 398 |||||||| |||||||||||||||||||||| | ||||||||||||| Sbjct: 294 ctccatgatacttacctgcatcactgggttgtggaaccatactatgct 341 Score = 60.0 bits (30), Expect = 3e-05 Identities = 54/62 (87%) Strand = Plus / Plus Query: 912 tgcaaggttgagtatcaagtcgaggaatgcagcacggaaaaccgagccaacaacgagtgc 971 |||||||||||||| ||||| ||||||||||| | |||||||| ||||| || |||||| Sbjct: 858 tgcaaggttgagtaccaagttgaggaatgcagtccagaaaaccgggccaagaatgagtgc 917 Query: 972 at 973 || Sbjct: 918 at 919
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8 Length = 28434780 Score = 208 bits (105), Expect = 5e-50 Identities = 321/393 (81%) Strand = Plus / Plus Query: 482 ccagtacttcgggctcggttccgagactcgccacaccgccacatgggttcctgatcctta 541 |||||||| ||| || ||||| ||||||||||| || ||||||||||| ||||||||||| Sbjct: 26912640 ccagtactacggccttggttctgagactcgccatactgccacatgggtacctgatcctta 26912699 Query: 542 tggaattgagaccggcaaccaagagaaggcccctgaaggctatgaggagaaatggttgct 601 || || |||| || || | |||||| |||||||||| |||||||||||||||||| | Sbjct: 26912700 cggcatagagattggtaatccggagaagccccctgaaggatatgaggagaaatggttgat 26912759 Query: 602 caatatccatgccatcgacacgaggggcgtggtcgacaagcctagctgcaccgagtgcaa 661 |||| | |||||||| ||||| ||||| | | ||||||||| | ||||| |||||||| Sbjct: 26912760 caatgtgcatgccattgacacaaggggtgcgatcgacaagctaggatgcactgagtgcaa 26912819 Query: 662 gtgcgactcttacaacgtcacaatcgatgagtatgggcgcacagtctcgaagaactacac 721 ||| || ||||||| | || ||||| ||||||||||||| | || | ||| |||||| Sbjct: 26912820 gtgtgatctttacaacatgacgatcgacgagtatgggcgcaaactcccaaaggactacat 26912879 Query: 722 tggtgggttgctttgctgctatgatcagacccagtgtcagctcaaggaagggttcaatgg 781 |||||| || ||||||||||||| |||| ||||| || | |||||||| ||||| || Sbjct: 26912880 tggtggtttatattgctgctatgatgagacgcagtgcaaggttaaggaaggtttcaacgg 26912939 Query: 782 cgaggtgcggacggtgttcttgcagtacaccgtgacttggctcgactggactgacgcggt 841 ||| | |||| | ||||||||| |||||| ||||| ||||| ||||||| ||| ||||| Sbjct: 26912940 tgagctacggaagctgttcttgcggtacactgtgacgtggcttgactggagtgatgcggt 26912999 Query: 842 ggtgcctgtcaagatctacatatttgacgttac 874 ||||| |||||||| ||||||||||| ||||| Sbjct: 26913000 tgtgccagtcaagatttacatatttgatgttac 26913032 Score = 159 bits (80), Expect = 4e-35 Identities = 191/228 (83%) Strand = Plus / Plus Query: 171 gaagccctcaacgtgagaggccatctgctgaaatcaaagacgttccgttctccgcccatc 230 ||||| ||||| || ||||||||||| |||||||| ||||| || | |||||| | || Sbjct: 26912326 gaagctctcaatgtaagaggccatctactgaaatccaagacatttctgtctccggcattc 26912385 Query: 231 ttactgggccctggatcggtctcaaacaagtactaccatgatgtcgacttcccccgaggc 290 || ||| ||||||||| || |||||||||| |||| |||||||| |||||| ||||| Sbjct: 26912386 ttcctgcaccctggatcagtttcaaacaagttctactatgatgtccccttccctagaggc 26912445 Query: 291 caccttgcagtcaagagctttgatgcagaggtcgtcgatgagaacggggtccctgtcccg 350 |||||||| ||||||||||| |||| || ||||| || ||||| || |||||||| ||| Sbjct: 26912446 caccttgctctcaagagctttaatgctgaagtcgtagacgagaatggcgtccctgttccg 26912505 Query: 351 ctccatgagacttacctgcatcactgggttgcagtaccatactatgct 398 |||||||| |||||||||||||||||||||| | ||||||||||||| Sbjct: 26912506 ctccatgatacttacctgcatcactgggttgtggaaccatactatgct 26912553 Score = 153 bits (77), Expect = 2e-33 Identities = 122/137 (89%) Strand = Plus / Plus Query: 1143 aactacatcgtcggcatgtcgagttgctaccctaagccaggatccatcaaggtcagcgac 1202 |||||||||||||||||||| | |||||||| ||||| ||||| |||||||||| || Sbjct: 26913587 aactacatcgtcggcatgtcaacatgctacccgaagccgggatcagtcaaggtcagtgat 26913646 Query: 1203 ggcgaggtgctgaccatcgtctccaactacagcagcacccgcgagcacaccggcgtcatg 1262 ||||||||||||||| ||||||||||||||||||| |||| ||||||||||||||||| Sbjct: 26913647 ggcgaggtgctgaccgtcgtctccaactacagcagtgaccgccagcacaccggcgtcatg 26913706 Query: 1263 ggcctggtctacatcct 1279 |||||| |||||||||| Sbjct: 26913707 ggcctgctctacatcct 26913723 Score = 52.0 bits (26), Expect = 0.007 Identities = 50/58 (86%) Strand = Plus / Plus Query: 916 aggttgagtatcaagtcgaggaatgcagcacggaaaaccgagccaacaacgagtgcat 973 |||||||||| ||||| ||||||||||| | |||||||| ||||| || |||||||| Sbjct: 26913206 aggttgagtaccaagttgaggaatgcagtccagaaaaccgggccaagaatgagtgcat 26913263
>dbj|AP004592.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0666G10 Length = 150761 Score = 208 bits (105), Expect = 5e-50 Identities = 321/393 (81%) Strand = Plus / Plus Query: 482 ccagtacttcgggctcggttccgagactcgccacaccgccacatgggttcctgatcctta 541 |||||||| ||| || ||||| ||||||||||| || ||||||||||| ||||||||||| Sbjct: 14040 ccagtactacggccttggttctgagactcgccatactgccacatgggtacctgatcctta 14099 Query: 542 tggaattgagaccggcaaccaagagaaggcccctgaaggctatgaggagaaatggttgct 601 || || |||| || || | |||||| |||||||||| |||||||||||||||||| | Sbjct: 14100 cggcatagagattggtaatccggagaagccccctgaaggatatgaggagaaatggttgat 14159 Query: 602 caatatccatgccatcgacacgaggggcgtggtcgacaagcctagctgcaccgagtgcaa 661 |||| | |||||||| ||||| ||||| | | ||||||||| | ||||| |||||||| Sbjct: 14160 caatgtgcatgccattgacacaaggggtgcgatcgacaagctaggatgcactgagtgcaa 14219 Query: 662 gtgcgactcttacaacgtcacaatcgatgagtatgggcgcacagtctcgaagaactacac 721 ||| || ||||||| | || ||||| ||||||||||||| | || | ||| |||||| Sbjct: 14220 gtgtgatctttacaacatgacgatcgacgagtatgggcgcaaactcccaaaggactacat 14279 Query: 722 tggtgggttgctttgctgctatgatcagacccagtgtcagctcaaggaagggttcaatgg 781 |||||| || ||||||||||||| |||| ||||| || | |||||||| ||||| || Sbjct: 14280 tggtggtttatattgctgctatgatgagacgcagtgcaaggttaaggaaggtttcaacgg 14339 Query: 782 cgaggtgcggacggtgttcttgcagtacaccgtgacttggctcgactggactgacgcggt 841 ||| | |||| | ||||||||| |||||| ||||| ||||| ||||||| ||| ||||| Sbjct: 14340 tgagctacggaagctgttcttgcggtacactgtgacgtggcttgactggagtgatgcggt 14399 Query: 842 ggtgcctgtcaagatctacatatttgacgttac 874 ||||| |||||||| ||||||||||| ||||| Sbjct: 14400 tgtgccagtcaagatttacatatttgatgttac 14432 Score = 159 bits (80), Expect = 4e-35 Identities = 191/228 (83%) Strand = Plus / Plus Query: 171 gaagccctcaacgtgagaggccatctgctgaaatcaaagacgttccgttctccgcccatc 230 ||||| ||||| || ||||||||||| |||||||| ||||| || | |||||| | || Sbjct: 13726 gaagctctcaatgtaagaggccatctactgaaatccaagacatttctgtctccggcattc 13785 Query: 231 ttactgggccctggatcggtctcaaacaagtactaccatgatgtcgacttcccccgaggc 290 || ||| ||||||||| || |||||||||| |||| |||||||| |||||| ||||| Sbjct: 13786 ttcctgcaccctggatcagtttcaaacaagttctactatgatgtccccttccctagaggc 13845 Query: 291 caccttgcagtcaagagctttgatgcagaggtcgtcgatgagaacggggtccctgtcccg 350 |||||||| ||||||||||| |||| || ||||| || ||||| || |||||||| ||| Sbjct: 13846 caccttgctctcaagagctttaatgctgaagtcgtagacgagaatggcgtccctgttccg 13905 Query: 351 ctccatgagacttacctgcatcactgggttgcagtaccatactatgct 398 |||||||| |||||||||||||||||||||| | ||||||||||||| Sbjct: 13906 ctccatgatacttacctgcatcactgggttgtggaaccatactatgct 13953 Score = 153 bits (77), Expect = 2e-33 Identities = 122/137 (89%) Strand = Plus / Plus Query: 1143 aactacatcgtcggcatgtcgagttgctaccctaagccaggatccatcaaggtcagcgac 1202 |||||||||||||||||||| | |||||||| ||||| ||||| |||||||||| || Sbjct: 14987 aactacatcgtcggcatgtcaacatgctacccgaagccgggatcagtcaaggtcagtgat 15046 Query: 1203 ggcgaggtgctgaccatcgtctccaactacagcagcacccgcgagcacaccggcgtcatg 1262 ||||||||||||||| ||||||||||||||||||| |||| ||||||||||||||||| Sbjct: 15047 ggcgaggtgctgaccgtcgtctccaactacagcagtgaccgccagcacaccggcgtcatg 15106 Query: 1263 ggcctggtctacatcct 1279 |||||| |||||||||| Sbjct: 15107 ggcctgctctacatcct 15123 Score = 52.0 bits (26), Expect = 0.007 Identities = 50/58 (86%) Strand = Plus / Plus Query: 916 aggttgagtatcaagtcgaggaatgcagcacggaaaaccgagccaacaacgagtgcat 973 |||||||||| ||||| ||||||||||| | |||||||| ||||| || |||||||| Sbjct: 14606 aggttgagtaccaagttgaggaatgcagtccagaaaaccgggccaagaatgagtgcat 14663
>dbj|AP004464.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0665C04 Length = 177054 Score = 208 bits (105), Expect = 5e-50 Identities = 321/393 (81%) Strand = Plus / Plus Query: 482 ccagtacttcgggctcggttccgagactcgccacaccgccacatgggttcctgatcctta 541 |||||||| ||| || ||||| ||||||||||| || ||||||||||| ||||||||||| Sbjct: 175430 ccagtactacggccttggttctgagactcgccatactgccacatgggtacctgatcctta 175489 Query: 542 tggaattgagaccggcaaccaagagaaggcccctgaaggctatgaggagaaatggttgct 601 || || |||| || || | |||||| |||||||||| |||||||||||||||||| | Sbjct: 175490 cggcatagagattggtaatccggagaagccccctgaaggatatgaggagaaatggttgat 175549 Query: 602 caatatccatgccatcgacacgaggggcgtggtcgacaagcctagctgcaccgagtgcaa 661 |||| | |||||||| ||||| ||||| | | ||||||||| | ||||| |||||||| Sbjct: 175550 caatgtgcatgccattgacacaaggggtgcgatcgacaagctaggatgcactgagtgcaa 175609 Query: 662 gtgcgactcttacaacgtcacaatcgatgagtatgggcgcacagtctcgaagaactacac 721 ||| || ||||||| | || ||||| ||||||||||||| | || | ||| |||||| Sbjct: 175610 gtgtgatctttacaacatgacgatcgacgagtatgggcgcaaactcccaaaggactacat 175669 Query: 722 tggtgggttgctttgctgctatgatcagacccagtgtcagctcaaggaagggttcaatgg 781 |||||| || ||||||||||||| |||| ||||| || | |||||||| ||||| || Sbjct: 175670 tggtggtttatattgctgctatgatgagacgcagtgcaaggttaaggaaggtttcaacgg 175729 Query: 782 cgaggtgcggacggtgttcttgcagtacaccgtgacttggctcgactggactgacgcggt 841 ||| | |||| | ||||||||| |||||| ||||| ||||| ||||||| ||| ||||| Sbjct: 175730 tgagctacggaagctgttcttgcggtacactgtgacgtggcttgactggagtgatgcggt 175789 Query: 842 ggtgcctgtcaagatctacatatttgacgttac 874 ||||| |||||||| ||||||||||| ||||| Sbjct: 175790 tgtgccagtcaagatttacatatttgatgttac 175822 Score = 159 bits (80), Expect = 4e-35 Identities = 191/228 (83%) Strand = Plus / Plus Query: 171 gaagccctcaacgtgagaggccatctgctgaaatcaaagacgttccgttctccgcccatc 230 ||||| ||||| || ||||||||||| |||||||| ||||| || | |||||| | || Sbjct: 175116 gaagctctcaatgtaagaggccatctactgaaatccaagacatttctgtctccggcattc 175175 Query: 231 ttactgggccctggatcggtctcaaacaagtactaccatgatgtcgacttcccccgaggc 290 || ||| ||||||||| || |||||||||| |||| |||||||| |||||| ||||| Sbjct: 175176 ttcctgcaccctggatcagtttcaaacaagttctactatgatgtccccttccctagaggc 175235 Query: 291 caccttgcagtcaagagctttgatgcagaggtcgtcgatgagaacggggtccctgtcccg 350 |||||||| ||||||||||| |||| || ||||| || ||||| || |||||||| ||| Sbjct: 175236 caccttgctctcaagagctttaatgctgaagtcgtagacgagaatggcgtccctgttccg 175295 Query: 351 ctccatgagacttacctgcatcactgggttgcagtaccatactatgct 398 |||||||| |||||||||||||||||||||| | ||||||||||||| Sbjct: 175296 ctccatgatacttacctgcatcactgggttgtggaaccatactatgct 175343 Score = 153 bits (77), Expect = 2e-33 Identities = 122/137 (89%) Strand = Plus / Plus Query: 1143 aactacatcgtcggcatgtcgagttgctaccctaagccaggatccatcaaggtcagcgac 1202 |||||||||||||||||||| | |||||||| ||||| ||||| |||||||||| || Sbjct: 176377 aactacatcgtcggcatgtcaacatgctacccgaagccgggatcagtcaaggtcagtgat 176436 Query: 1203 ggcgaggtgctgaccatcgtctccaactacagcagcacccgcgagcacaccggcgtcatg 1262 ||||||||||||||| ||||||||||||||||||| |||| ||||||||||||||||| Sbjct: 176437 ggcgaggtgctgaccgtcgtctccaactacagcagtgaccgccagcacaccggcgtcatg 176496 Query: 1263 ggcctggtctacatcct 1279 |||||| |||||||||| Sbjct: 176497 ggcctgctctacatcct 176513 Score = 52.0 bits (26), Expect = 0.007 Identities = 50/58 (86%) Strand = Plus / Plus Query: 916 aggttgagtatcaagtcgaggaatgcagcacggaaaaccgagccaacaacgagtgcat 973 |||||||||| ||||| ||||||||||| | |||||||| ||||| || |||||||| Sbjct: 175996 aggttgagtaccaagttgaggaatgcagtccagaaaaccgggccaagaatgagtgcat 176053
>dbj|AK067831.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013121M08, full insert sequence Length = 1719 Score = 208 bits (105), Expect = 5e-50 Identities = 321/393 (81%) Strand = Plus / Plus Query: 482 ccagtacttcgggctcggttccgagactcgccacaccgccacatgggttcctgatcctta 541 |||||||| ||| || ||||| ||||||||||| || ||||||||||| ||||||||||| Sbjct: 429 ccagtactacggccttggttctgagactcgccatactgccacatgggtacctgatcctta 488 Query: 542 tggaattgagaccggcaaccaagagaaggcccctgaaggctatgaggagaaatggttgct 601 || || |||| || || | |||||| |||||||||| |||||||||||||||||| | Sbjct: 489 cggcatagagattggtaatccggagaagccccctgaaggatatgaggagaaatggttgat 548 Query: 602 caatatccatgccatcgacacgaggggcgtggtcgacaagcctagctgcaccgagtgcaa 661 |||| | |||||||| ||||| ||||| | | ||||||||| | ||||| |||||||| Sbjct: 549 caatgtgcatgccattgacacaaggggtgcgatcgacaagctaggatgcactgagtgcaa 608 Query: 662 gtgcgactcttacaacgtcacaatcgatgagtatgggcgcacagtctcgaagaactacac 721 ||| || ||||||| | || ||||| ||||||||||||| | || | ||| |||||| Sbjct: 609 gtgtgatctttacaacatgacgatcgacgagtatgggcgcaaactcccaaaggactacat 668 Query: 722 tggtgggttgctttgctgctatgatcagacccagtgtcagctcaaggaagggttcaatgg 781 |||||| || ||||||||||||| |||| ||||| || | |||||||| ||||| || Sbjct: 669 tggtggtttatattgctgctatgatgagacgcagtgcaaggttaaggaaggtttcaacgg 728 Query: 782 cgaggtgcggacggtgttcttgcagtacaccgtgacttggctcgactggactgacgcggt 841 ||| | |||| | ||||||||| |||||| ||||| ||||| ||||||| ||| ||||| Sbjct: 729 tgagctacggaagctgttcttgcggtacactgtgacgtggcttgactggagtgatgcggt 788 Query: 842 ggtgcctgtcaagatctacatatttgacgttac 874 ||||| |||||||| ||||||||||| ||||| Sbjct: 789 tgtgccagtcaagatttacatatttgatgttac 821 Score = 161 bits (81), Expect = 1e-35 Identities = 285/353 (80%) Strand = Plus / Plus Query: 1006 gtggaggagatatcgtgtacagtgttgcgcaccagcactctggaggagtcggtgcttctc 1065 ||||||| |||||||||| |||| ||||| ||||| || || ||| | ||||| ||| Sbjct: 953 gtggaggcgatatcgtgtttggtgtcgcgcatcagcattcaggtggaattggtgcctctt 1012 Query: 1066 tgcatggccaggatggacgccttctatgtgaatcgcttccaacttacggcacagggaagg 1125 | || |||||||||||||| || || |||| |||| |||| | || |||| ||| | | Sbjct: 1013 tacacggccaggatggacgtctgctttgtgcatcgattccgagctatggcaagggggaag 1072 Query: 1126 aggcagggaacgaggcgaactacatcgtcggcatgtcgagttgctaccctaagccaggat 1185 |||| || || || | |||||||||||||||||||| | |||||||| ||||| |||| Sbjct: 1073 aggctggcaatgaagataactacatcgtcggcatgtcaacatgctacccgaagccgggat 1132 Query: 1186 ccatcaaggtcagcgacggcgaggtgctgaccatcgtctccaactacagcagcacccgcg 1245 | |||||||||| || ||||||||||||||| ||||||||||||||||||| |||| Sbjct: 1133 cagtcaaggtcagtgatggcgaggtgctgaccgtcgtctccaactacagcagtgaccgcc 1192 Query: 1246 agcacaccggcgtcatgggcctggtctacatcctcgtggccgagccgcagcagccggctc 1305 ||||||||||||||||||||||| |||||||||| || || |||| | ||||| |||| Sbjct: 1193 agcacaccggcgtcatgggcctgctctacatccttgttgcagagcaagaacagccagctc 1252 Query: 1306 cggcgccatccctgtgcttcagtttcccggccccatggtgcctaccggcatgg 1358 | ||| | ||||||||||| ||||||| ||||||||| ||||| ||||| Sbjct: 1253 ccaagcctgctctgtgcttcagcttcccggttccatggtgcttaccgacatgg 1305 Score = 159 bits (80), Expect = 4e-35 Identities = 191/228 (83%) Strand = Plus / Plus Query: 171 gaagccctcaacgtgagaggccatctgctgaaatcaaagacgttccgttctccgcccatc 230 ||||| ||||| || ||||||||||| |||||||| ||||| || | |||||| | || Sbjct: 115 gaagctctcaatgtaagaggccatctactgaaatccaagacatttctgtctccggcattc 174 Query: 231 ttactgggccctggatcggtctcaaacaagtactaccatgatgtcgacttcccccgaggc 290 || ||| ||||||||| || |||||||||| |||| |||||||| |||||| ||||| Sbjct: 175 ttcctgcaccctggatcagtttcaaacaagttctactatgatgtccccttccctagaggc 234 Query: 291 caccttgcagtcaagagctttgatgcagaggtcgtcgatgagaacggggtccctgtcccg 350 |||||||| ||||||||||| |||| || ||||| || ||||| || |||||||| ||| Sbjct: 235 caccttgctctcaagagctttaatgctgaagtcgtagacgagaatggcgtccctgttccg 294 Query: 351 ctccatgagacttacctgcatcactgggttgcagtaccatactatgct 398 |||||||| |||||||||||||||||||||| | ||||||||||||| Sbjct: 295 ctccatgatacttacctgcatcactgggttgtggaaccatactatgct 342 Score = 60.0 bits (30), Expect = 3e-05 Identities = 54/62 (87%) Strand = Plus / Plus Query: 912 tgcaaggttgagtatcaagtcgaggaatgcagcacggaaaaccgagccaacaacgagtgc 971 |||||||||||||| ||||| ||||||||||| | |||||||| ||||| || |||||| Sbjct: 859 tgcaaggttgagtaccaagttgaggaatgcagtccagaaaaccgggccaagaatgagtgc 918 Query: 972 at 973 || Sbjct: 919 at 920
>gb|AY107588.1| Zea mays PCO070301 mRNA sequence Length = 805 Score = 65.9 bits (33), Expect = 4e-07 Identities = 132/165 (80%) Strand = Plus / Plus Query: 1124 ggaggcagggaacgaggcgaactacatcgtcggcatgtcgagttgctaccctaagccagg 1183 |||||| ||| |||||||| |||||||||||||||||| | |||||||| || || Sbjct: 180 ggaggccggggacgaggcgggctacatcgtcggcatgtccacgtgctacccgcgcccggg 239 Query: 1184 atccatcaaggtcagcgacggcgaggtgctgaccatcgtctccaactacagcagcacccg 1243 || ||| ||| ||||||||||| ||| ||| |||| |||| ||||||||| ||| Sbjct: 240 cgccgtcacggtgcgcgacggcgagccgctcaccgtcgtgtccaggtacagcagcgaccg 299 Query: 1244 cgagcacaccggcgtcatgggcctggtctacatcctcgtggccga 1288 | ||||| |||||||||||||| ||||||||||||||||||| Sbjct: 300 ccgccacacgggcgtcatgggcctcttctacatcctcgtggccga 344 Score = 65.9 bits (33), Expect = 4e-07 Identities = 54/61 (88%) Strand = Plus / Plus Query: 1316 cctgtgcttcagtttcccggccccatggtgcctaccggcatggatgtctggcaacatgtg 1375 |||||||||||| ||||||| |||||||||||||||| ||||| |||| ||||| |||| Sbjct: 375 cctgtgcttcagcttcccggtcccatggtgcctaccgtcatggctgtcgagcaacctgtg 434 Query: 1376 a 1376 | Sbjct: 435 a 435
>dbj|AP004473.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT10J15, TM0007, complete sequence Length = 92741 Score = 50.1 bits (25), Expect = 0.026 Identities = 37/41 (90%) Strand = Plus / Minus Query: 576 gaaggctatgaggagaaatggttgctcaatatccatgccat 616 ||||| |||||||||||||||||||| ||| |||| ||||| Sbjct: 45077 gaagggtatgaggagaaatggttgctgaatgtccacgccat 45037 Score = 42.1 bits (21), Expect = 6.3 Identities = 36/41 (87%) Strand = Plus / Minus Query: 576 gaaggctatgaggagaaatggttgctcaatatccatgccat 616 ||||| ||||||||||||||| |||| ||| | |||||||| Sbjct: 52133 gaagggtatgaggagaaatggatgctgaatgtgcatgccat 52093
>dbj|AK092353.1| Homo sapiens cDNA FLJ35034 fis, clone OCBBF2016591, moderately similar to Mus musculus pecanex 1 mRNA Length = 2843 Score = 48.1 bits (24), Expect = 0.10 Identities = 24/24 (100%) Strand = Plus / Plus Query: 1289 gccgcagcagccggctccggcgcc 1312 |||||||||||||||||||||||| Sbjct: 68 gccgcagcagccggctccggcgcc 91
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4 Length = 35498469 Score = 48.1 bits (24), Expect = 0.10 Identities = 24/24 (100%) Strand = Plus / Plus Query: 62 cccttccgtccgtccgtccgtcct 85 |||||||||||||||||||||||| Sbjct: 35437073 cccttccgtccgtccgtccgtcct 35437096
>emb|AL590293.3| Human DNA sequence from clone RP11-227B10 on chromosome Xq21.33-22.3, complete sequence Length = 67911 Score = 48.1 bits (24), Expect = 0.10 Identities = 24/24 (100%) Strand = Plus / Plus Query: 62 cccttccgtccgtccgtccgtcct 85 |||||||||||||||||||||||| Sbjct: 50713 cccttccgtccgtccgtccgtcct 50736
>emb|AL133380.5| Human DNA sequence from clone RP5-862P8 on chromosome 1q42.2-43 Contains a ribosomal protein S7 (RPS7) pseudogene, pecanex homolog (Drosophila) (PCNX) pseudogene and the gene for mixed lineage kinase 4 (KIAA1804), complete sequence Length = 118632 Score = 48.1 bits (24), Expect = 0.10 Identities = 24/24 (100%) Strand = Plus / Minus Query: 1289 gccgcagcagccggctccggcgcc 1312 |||||||||||||||||||||||| Sbjct: 8682 gccgcagcagccggctccggcgcc 8659
>emb|AL606656.3|OSJN00099 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0020J19, complete sequence Length = 123272 Score = 48.1 bits (24), Expect = 0.10 Identities = 24/24 (100%) Strand = Plus / Plus Query: 62 cccttccgtccgtccgtccgtcct 85 |||||||||||||||||||||||| Sbjct: 61876 cccttccgtccgtccgtccgtcct 61899
>gb|AY644956.1| Andropadus virens clone AviAAGG41 microsatellite sequence Length = 590 Score = 46.1 bits (23), Expect = 0.40 Identities = 23/23 (100%) Strand = Plus / Minus Query: 63 ccttccgtccgtccgtccgtcct 85 ||||||||||||||||||||||| Sbjct: 423 ccttccgtccgtccgtccgtcct 401
>gb|AC091001.3| Papio anubis clone RP41-36M16, complete sequence Length = 177066 Score = 46.1 bits (23), Expect = 0.40 Identities = 23/23 (100%) Strand = Plus / Minus Query: 63 ccttccgtccgtccgtccgtcct 85 ||||||||||||||||||||||| Sbjct: 73479 ccttccgtccgtccgtccgtcct 73457
>emb|CT573262.5| Zebrafish DNA sequence from clone DKEY-237M13 in linkage group 24, complete sequence Length = 15821 Score = 44.1 bits (22), Expect = 1.6 Identities = 22/22 (100%) Strand = Plus / Plus Query: 63 ccttccgtccgtccgtccgtcc 84 |||||||||||||||||||||| Sbjct: 3575 ccttccgtccgtccgtccgtcc 3596
>emb|CR753893.6| Zebrafish DNA sequence from clone DKEYP-78A6 in linkage group 23, complete sequence Length = 197503 Score = 44.1 bits (22), Expect = 1.6 Identities = 22/22 (100%) Strand = Plus / Plus Query: 63 ccttccgtccgtccgtccgtcc 84 |||||||||||||||||||||| Sbjct: 174997 ccttccgtccgtccgtccgtcc 175018
>gb|AC189969.3| Rhesus Macaque BAC CH250-364N5 () complete sequence Length = 202145 Score = 44.1 bits (22), Expect = 1.6 Identities = 22/22 (100%) Strand = Plus / Minus Query: 63 ccttccgtccgtccgtccgtcc 84 |||||||||||||||||||||| Sbjct: 19268 ccttccgtccgtccgtccgtcc 19247
>ref|XR_013820.1| PREDICTED: Macaca mulatta similar to lemur tyrosine kinase 2 (LOC718147), mRNA Length = 6501 Score = 44.1 bits (22), Expect = 1.6 Identities = 22/22 (100%) Strand = Plus / Minus Query: 63 ccttccgtccgtccgtccgtcc 84 |||||||||||||||||||||| Sbjct: 873 ccttccgtccgtccgtccgtcc 852
>gb|AC153494.25| Mus musculus 10 BAC RP23-345J24 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 231991 Score = 44.1 bits (22), Expect = 1.6 Identities = 22/22 (100%) Strand = Plus / Minus Query: 63 ccttccgtccgtccgtccgtcc 84 |||||||||||||||||||||| Sbjct: 115146 ccttccgtccgtccgtccgtcc 115125
>gb|AY874066.1| Ispidina picta clone CpictaAAGG168 microsatellite sequence Length = 428 Score = 44.1 bits (22), Expect = 1.6 Identities = 22/22 (100%) Strand = Plus / Minus Query: 63 ccttccgtccgtccgtccgtcc 84 |||||||||||||||||||||| Sbjct: 118 ccttccgtccgtccgtccgtcc 97
>gb|AC125233.4| Mus musculus BAC clone RP23-9D24 from chromosome 5, complete sequence Length = 212792 Score = 44.1 bits (22), Expect = 1.6 Identities = 22/22 (100%) Strand = Plus / Plus Query: 63 ccttccgtccgtccgtccgtcc 84 |||||||||||||||||||||| Sbjct: 115749 ccttccgtccgtccgtccgtcc 115770
>gb|AY115493.1| Mus musculus transmembrane glycoprotein E11 (E11) gene, promoter region, exons 1 through 6 and complete cds Length = 48787 Score = 44.1 bits (22), Expect = 1.6 Identities = 22/22 (100%) Strand = Plus / Plus Query: 63 ccttccgtccgtccgtccgtcc 84 |||||||||||||||||||||| Sbjct: 9106 ccttccgtccgtccgtccgtcc 9127
>emb|CR384074.11| Zebrafish DNA sequence from clone DKEY-229H19 in linkage group 24, complete sequence Length = 138451 Score = 44.1 bits (22), Expect = 1.6 Identities = 22/22 (100%) Strand = Plus / Minus Query: 63 ccttccgtccgtccgtccgtcc 84 |||||||||||||||||||||| Sbjct: 71637 ccttccgtccgtccgtccgtcc 71616
>emb|AL513444.1|NCB11N2 Neurospora crassa DNA linkage group V BAC contig B11N2 Length = 99360 Score = 44.1 bits (22), Expect = 1.6 Identities = 22/22 (100%) Strand = Plus / Plus Query: 63 ccttccgtccgtccgtccgtcc 84 |||||||||||||||||||||| Sbjct: 7390 ccttccgtccgtccgtccgtcc 7411
>emb|BX649266.9| Zebrafish DNA sequence from clone DKEY-19J7 in linkage group 9, complete sequence Length = 235135 Score = 44.1 bits (22), Expect = 1.6 Identities = 22/22 (100%) Strand = Plus / Plus Query: 63 ccttccgtccgtccgtccgtcc 84 |||||||||||||||||||||| Sbjct: 178336 ccttccgtccgtccgtccgtcc 178357
>emb|AL607028.14| Human DNA sequence from clone RP11-25G10 on chromosome 10 Contains part of the gene for a novel protein (LOC221061) and a novel gene, complete sequence Length = 118158 Score = 44.1 bits (22), Expect = 1.6 Identities = 22/22 (100%) Strand = Plus / Plus Query: 63 ccttccgtccgtccgtccgtcc 84 |||||||||||||||||||||| Sbjct: 33349 ccttccgtccgtccgtccgtcc 33370
>emb|AL451013.1|NCB2F7 Neurospora crassa DNA linkage group V BAC clone B2F7 Length = 75163 Score = 44.1 bits (22), Expect = 1.6 Identities = 22/22 (100%) Strand = Plus / Plus Query: 63 ccttccgtccgtccgtccgtcc 84 |||||||||||||||||||||| Sbjct: 71706 ccttccgtccgtccgtccgtcc 71727
>gb|AC110801.3| Homo sapiens BAC clone RP11-711M9 from 2, complete sequence Length = 81952 Score = 44.1 bits (22), Expect = 1.6 Identities = 22/22 (100%) Strand = Plus / Plus Query: 63 ccttccgtccgtccgtccgtcc 84 |||||||||||||||||||||| Sbjct: 74033 ccttccgtccgtccgtccgtcc 74054
>emb|BX530071.7| Zebrafish DNA sequence from clone CH211-189P14 in linkage group 10, complete sequence Length = 148539 Score = 44.1 bits (22), Expect = 1.6 Identities = 22/22 (100%) Strand = Plus / Plus Query: 63 ccttccgtccgtccgtccgtcc 84 |||||||||||||||||||||| Sbjct: 58847 ccttccgtccgtccgtccgtcc 58868
>emb|BX537275.8| Zebrafish DNA sequence from clone DKEYP-120E12 in linkage group 11, complete sequence Length = 173631 Score = 44.1 bits (22), Expect = 1.6 Identities = 25/26 (96%) Strand = Plus / Minus Query: 66 tccgtccgtccgtccgtcctactcat 91 ||||||||||||||||||| |||||| Sbjct: 79873 tccgtccgtccgtccgtcccactcat 79848
>emb|BX088582.4| Zebrafish DNA sequence from clone CH211-188B17 in linkage group 15, complete sequence Length = 155363 Score = 44.1 bits (22), Expect = 1.6 Identities = 22/22 (100%) Strand = Plus / Minus Query: 63 ccttccgtccgtccgtccgtcc 84 |||||||||||||||||||||| Sbjct: 55680 ccttccgtccgtccgtccgtcc 55659
>emb|BX255900.5| Zebrafish DNA sequence from clone CH211-261C8 in linkage group 5, complete sequence Length = 150487 Score = 44.1 bits (22), Expect = 1.6 Identities = 22/22 (100%) Strand = Plus / Minus Query: 63 ccttccgtccgtccgtccgtcc 84 |||||||||||||||||||||| Sbjct: 55757 ccttccgtccgtccgtccgtcc 55736
>emb|BX293562.5| Zebrafish DNA sequence from clone DKEYP-5F12 in linkage group 10, complete sequence Length = 183193 Score = 44.1 bits (22), Expect = 1.6 Identities = 22/22 (100%) Strand = Plus / Plus Query: 63 ccttccgtccgtccgtccgtcc 84 |||||||||||||||||||||| Sbjct: 154134 ccttccgtccgtccgtccgtcc 154155
>gb|AC152831.2| Ornithorhynchus anatinus chromosome UNK clone OABb-168A1, complete sequence Length = 139370 Score = 44.1 bits (22), Expect = 1.6 Identities = 22/22 (100%) Strand = Plus / Plus Query: 63 ccttccgtccgtccgtccgtcc 84 |||||||||||||||||||||| Sbjct: 46310 ccttccgtccgtccgtccgtcc 46331
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 44.1 bits (22), Expect = 1.6 Identities = 25/26 (96%) Strand = Plus / Minus Query: 1187 catcaaggtcagcgacggcgaggtgc 1212 ||||||||||||||||| |||||||| Sbjct: 2746553 catcaaggtcagcgacgccgaggtgc 2746528
>emb|CR847901.7| Zebrafish DNA sequence from clone DKEY-215L17 in linkage group 10, complete sequence Length = 106274 Score = 44.1 bits (22), Expect = 1.6 Identities = 22/22 (100%) Strand = Plus / Minus Query: 63 ccttccgtccgtccgtccgtcc 84 |||||||||||||||||||||| Sbjct: 105159 ccttccgtccgtccgtccgtcc 105138
>emb|AL954192.3| Zebrafish DNA sequence from clone CH211-215D15, complete sequence Length = 198052 Score = 44.1 bits (22), Expect = 1.6 Identities = 22/22 (100%) Strand = Plus / Plus Query: 63 ccttccgtccgtccgtccgtcc 84 |||||||||||||||||||||| Sbjct: 139923 ccttccgtccgtccgtccgtcc 139944
>emb|BX000438.7| Zebrafish DNA sequence from clone CH211-209M20 in linkage group 20, complete sequence Length = 195087 Score = 44.1 bits (22), Expect = 1.6 Identities = 22/22 (100%) Strand = Plus / Minus Query: 63 ccttccgtccgtccgtccgtcc 84 |||||||||||||||||||||| Sbjct: 134036 ccttccgtccgtccgtccgtcc 134015
>emb|AL935040.6| Zebrafish DNA sequence from clone CH211-176L21, complete sequence Length = 159468 Score = 44.1 bits (22), Expect = 1.6 Identities = 25/26 (96%) Strand = Plus / Minus Query: 66 tccgtccgtccgtccgtcctactcat 91 ||||||||||||||||||| |||||| Sbjct: 81266 tccgtccgtccgtccgtcccactcat 81241
>gb|CP000479.1| Mycobacterium avium 104, complete genome Length = 5475491 Score = 42.1 bits (21), Expect = 6.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1200 gacggcgaggtgctgaccatc 1220 ||||||||||||||||||||| Sbjct: 4125388 gacggcgaggtgctgaccatc 4125368
>gb|AC190174.3| Pan troglodytes BAC clone CH251-539J21 from chromosome 7, complete sequence Length = 192481 Score = 42.1 bits (21), Expect = 6.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 119 ctctgttgtgctgctcattgc 139 ||||||||||||||||||||| Sbjct: 131612 ctctgttgtgctgctcattgc 131592
>emb|AM236085.1| Rhizobium leguminosarum bv. viciae plasmid pRL11 complete genome, strain 3841 Length = 684202 Score = 42.1 bits (21), Expect = 6.3 Identities = 27/29 (93%) Strand = Plus / Plus Query: 1283 ggccgagccgcagcagccggctccggcgc 1311 |||||||||||||| |||||| ||||||| Sbjct: 682127 ggccgagccgcagccgccggcgccggcgc 682155
>ref|XM_514278.2| PREDICTED: Pan troglodytes similar to mKIAA0435 protein (LOC457826), mRNA Length = 6816 Score = 42.1 bits (21), Expect = 6.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1292 gcagcagccggctccggcgcc 1312 ||||||||||||||||||||| Sbjct: 15 gcagcagccggctccggcgcc 35
>gb|AE013599.4| Drosophila melanogaster chromosome 2R, complete sequence Length = 21146708 Score = 42.1 bits (21), Expect = 6.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 66 tccgtccgtccgtccgtccta 86 ||||||||||||||||||||| Sbjct: 3525192 tccgtccgtccgtccgtccta 3525212
>emb|CR854833.11| Zebrafish DNA sequence from clone DKEY-116I15, complete sequence Length = 176336 Score = 42.1 bits (21), Expect = 6.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 66 tccgtccgtccgtccgtccta 86 ||||||||||||||||||||| Sbjct: 85580 tccgtccgtccgtccgtccta 85600
>gb|CP000431.1| Rhodococcus sp. RHA1, complete genome Length = 7804765 Score = 42.1 bits (21), Expect = 6.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1290 ccgcagcagccggctccggcg 1310 ||||||||||||||||||||| Sbjct: 7342540 ccgcagcagccggctccggcg 7342560
>ref|XM_001112124.1| PREDICTED: Macaca mulatta hypothetical protein LOC718846 (LOC718846), mRNA Length = 159 Score = 42.1 bits (21), Expect = 6.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1292 gcagcagccggctccggcgcc 1312 ||||||||||||||||||||| Sbjct: 22 gcagcagccggctccggcgcc 42
>gb|CP000087.1| Rickettsia bellii RML369-C, complete genome Length = 1522076 Score = 42.1 bits (21), Expect = 6.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1495 ttactagctaatatatataca 1515 ||||||||||||||||||||| Sbjct: 1399757 ttactagctaatatatataca 1399737
>gb|BT016757.1| Zea mays clone Contig590 mRNA sequence Length = 898 Score = 42.1 bits (21), Expect = 6.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 1187 catcaaggtcagcgacggcgaggtg 1211 ||||||||||||||||| ||||||| Sbjct: 736 catcaaggtcagcgacgacgaggtg 760
>gb|BT016469.1| Zea mays clone Contig302 mRNA sequence Length = 1305 Score = 42.1 bits (21), Expect = 6.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 1187 catcaaggtcagcgacggcgaggtg 1211 ||||||||||||||||| ||||||| Sbjct: 823 catcaaggtcagcgacgacgaggtg 799
>gb|AC132307.5| Mus musculus BAC clone RP24-291H9 from chromosome 18, complete sequence Length = 179465 Score = 42.1 bits (21), Expect = 6.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 63 ccttccgtccgtccgtccgtc 83 ||||||||||||||||||||| Sbjct: 32883 ccttccgtccgtccgtccgtc 32863
>ref|XM_533283.2| PREDICTED: Canis familiaris similar to Y45F10A.6b, transcript variant 1 (LOC476074), mRNA Length = 3801 Score = 42.1 bits (21), Expect = 6.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 18 cagccgcagccacagctccccccgc 42 |||| |||||||||||||||||||| Sbjct: 1584 cagcagcagccacagctccccccgc 1560
>ref|XM_850717.1| PREDICTED: Canis familiaris similar to Y45F10A.6b, transcript variant 4 (LOC476074), mRNA Length = 3528 Score = 42.1 bits (21), Expect = 6.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 18 cagccgcagccacagctccccccgc 42 |||| |||||||||||||||||||| Sbjct: 1584 cagcagcagccacagctccccccgc 1560
>ref|XM_850675.1| PREDICTED: Canis familiaris similar to Y45F10A.6b, transcript variant 3 (LOC476074), mRNA Length = 3102 Score = 42.1 bits (21), Expect = 6.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 18 cagccgcagccacagctccccccgc 42 |||| |||||||||||||||||||| Sbjct: 885 cagcagcagccacagctccccccgc 861
>gb|AY197773.1| Zea mays fructokinase 2 (frk2) mRNA, complete cds Length = 1358 Score = 42.1 bits (21), Expect = 6.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 1187 catcaaggtcagcgacggcgaggtg 1211 ||||||||||||||||| ||||||| Sbjct: 726 catcaaggtcagcgacgacgaggtg 750
>gb|AC007036.3| Homo sapiens BAC clone RP11-112E16 from 7, complete sequence Length = 167700 Score = 42.1 bits (21), Expect = 6.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 119 ctctgttgtgctgctcattgc 139 ||||||||||||||||||||| Sbjct: 96876 ctctgttgtgctgctcattgc 96856
>dbj|BA000038.2| Vibrio vulnificus YJ016 DNA, chromosome II, complete sequence Length = 1857073 Score = 42.1 bits (21), Expect = 6.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 1605 tataaagctgagttgtatgagttga 1629 |||||||| |||||||||||||||| Sbjct: 1406469 tataaagcagagttgtatgagttga 1406445
>ref|NM_001017689.1| Danio rerio zgc:112001 (zgc:112001), mRNA gb|BC093152.1| Danio rerio zgc:112001, mRNA (cDNA clone MGC:112001 IMAGE:7406462), complete cds Length = 2082 Score = 42.1 bits (21), Expect = 6.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 63 ccttccgtccgtccgtccgtc 83 ||||||||||||||||||||| Sbjct: 110 ccttccgtccgtccgtccgtc 90
>gb|AC137711.21| Mus musculus chromosome 5, clone RP23-282A16, complete sequence Length = 181459 Score = 42.1 bits (21), Expect = 6.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 226 ccatcttactgggccctggat 246 ||||||||||||||||||||| Sbjct: 168337 ccatcttactgggccctggat 168317
>gb|AC136742.15| Mus musculus chromosome 5, clone RP23-145H8, complete sequence Length = 197131 Score = 42.1 bits (21), Expect = 6.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 226 ccatcttactgggccctggat 246 ||||||||||||||||||||| Sbjct: 33487 ccatcttactgggccctggat 33467
>gb|AC096887.2| Homo sapiens chromosome 3 clone RP11-5O17, complete sequence Length = 171289 Score = 42.1 bits (21), Expect = 6.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1312 catccctgtgcttcagtttcc 1332 ||||||||||||||||||||| Sbjct: 153698 catccctgtgcttcagtttcc 153678
>ref|NM_204253.1| Gallus gallus class II bHLH protein scleraxis (SCX), mRNA gb|AF505881.1| Gallus gallus bHLH transcription factor scleraxis mRNA, complete cds Length = 1133 Score = 42.1 bits (21), Expect = 6.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 65 ttccgtccgtccgtccgtcct 85 ||||||||||||||||||||| Sbjct: 798 ttccgtccgtccgtccgtcct 778
>emb|CT009536.7| Mouse DNA sequence from clone RP23-25A7 on chromosome 14, complete sequence Length = 239515 Score = 42.1 bits (21), Expect = 6.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 1117 cagggaaggaggcagggaacgaggc 1141 ||||||||||||||||||| ||||| Sbjct: 196629 cagggaaggaggcagggaaggaggc 196653 Score = 42.1 bits (21), Expect = 6.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 1117 cagggaaggaggcagggaacgaggc 1141 ||||||||||||||||||| ||||| Sbjct: 196641 cagggaaggaggcagggaaggaggc 196665
>gb|CP000239.1| Synechococcus sp. JA-3-3Ab, complete genome Length = 2932766 Score = 42.1 bits (21), Expect = 6.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 308 ctttgatgcagaggtcgtcgatgag 332 ||||| ||||||||||||||||||| Sbjct: 302533 ctttggtgcagaggtcgtcgatgag 302557
>emb|AL591792.1|SME591792 Sinorhizobium meliloti 1021 complete chromosome; segment 11/12 Length = 333800 Score = 42.1 bits (21), Expect = 6.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1195 tcagcgacggcgaggtgctga 1215 ||||||||||||||||||||| Sbjct: 276651 tcagcgacggcgaggtgctga 276631
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12 Length = 27566993 Score = 42.1 bits (21), Expect = 6.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 64 cttccgtccgtccgtccgtcc 84 ||||||||||||||||||||| Sbjct: 1737355 cttccgtccgtccgtccgtcc 1737335
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2 Length = 35954743 Score = 42.1 bits (21), Expect = 6.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 64 cttccgtccgtccgtccgtcc 84 ||||||||||||||||||||| Sbjct: 18217320 cttccgtccgtccgtccgtcc 18217300
>gb|AC093046.1| Drosophila melanogaster, chromosome 2R, region 43D-43E, BAC clone BACR29D02, complete sequence Length = 158372 Score = 42.1 bits (21), Expect = 6.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 66 tccgtccgtccgtccgtccta 86 ||||||||||||||||||||| Sbjct: 58357 tccgtccgtccgtccgtccta 58377
>gb|AC008259.4|AC008259 Drosophila melanogaster, chromosome 2R, region 43D-43D, BAC clone BACR04H12, complete sequence Length = 175285 Score = 42.1 bits (21), Expect = 6.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 66 tccgtccgtccgtccgtccta 86 ||||||||||||||||||||| Sbjct: 130874 tccgtccgtccgtccgtccta 130894
>emb|BX294098.11| Zebrafish DNA sequence from clone CH211-254P12 in linkage group 24, complete sequence Length = 152545 Score = 42.1 bits (21), Expect = 6.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 60 tacccttccgtccgtccgtccgtcc 84 ||||| ||||||||||||||||||| Sbjct: 134786 tacccgtccgtccgtccgtccgtcc 134810
>emb|BX649389.12| Zebrafish DNA sequence from clone DKEY-28D3 in linkage group 1, complete sequence Length = 110743 Score = 42.1 bits (21), Expect = 6.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 66 tccgtccgtccgtccgtccta 86 ||||||||||||||||||||| Sbjct: 17904 tccgtccgtccgtccgtccta 17924
>emb|BX000486.13| Zebrafish DNA sequence from clone DKEY-149M16 in linkage group 10, complete sequence Length = 195419 Score = 42.1 bits (21), Expect = 6.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 63 ccttccgtccgtccgtccgtc 83 ||||||||||||||||||||| Sbjct: 96961 ccttccgtccgtccgtccgtc 96981
>emb|CR388386.12| Zebrafish DNA sequence from clone DKEY-253N6 in linkage group 22, complete sequence Length = 143089 Score = 42.1 bits (21), Expect = 6.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 66 tccgtccgtccgtccgtccta 86 ||||||||||||||||||||| Sbjct: 80066 tccgtccgtccgtccgtccta 80046
>emb|BX537126.6| Zebrafish DNA sequence from clone DKEYP-100E7 in linkage group 11, complete sequence Length = 67754 Score = 42.1 bits (21), Expect = 6.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 66 tccgtccgtccgtccgtccta 86 ||||||||||||||||||||| Sbjct: 29422 tccgtccgtccgtccgtccta 29402
>dbj|AP005841.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0052M16 Length = 145423 Score = 42.1 bits (21), Expect = 6.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 64 cttccgtccgtccgtccgtcc 84 ||||||||||||||||||||| Sbjct: 18533 cttccgtccgtccgtccgtcc 18513
>dbj|AP005066.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0047E05 Length = 184323 Score = 42.1 bits (21), Expect = 6.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 64 cttccgtccgtccgtccgtcc 84 ||||||||||||||||||||| Sbjct: 140721 cttccgtccgtccgtccgtcc 140701
>gb|AF457962.1| Zea mays clone csi1n.pk0029.c8, mRNA sequence Length = 543 Score = 42.1 bits (21), Expect = 6.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 1187 catcaaggtcagcgacggcgaggtg 1211 ||||||||||||||||| ||||||| Sbjct: 213 catcaaggtcagcgacgacgaggtg 237
>emb|BX255915.13| Zebrafish DNA sequence from clone CH211-245L1 in linkage group 5, complete sequence Length = 157382 Score = 42.1 bits (21), Expect = 6.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 60 tacccttccgtccgtccgtccgtcc 84 ||||| ||||||||||||||||||| Sbjct: 78000 tacccgtccgtccgtccgtccgtcc 78024
>gb|AC156448.2| Volvox carteri clone JGIAOBO-33O24, complete sequence Length = 38975 Score = 42.1 bits (21), Expect = 6.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 64 cttccgtccgtccgtccgtcc 84 ||||||||||||||||||||| Sbjct: 23001 cttccgtccgtccgtccgtcc 23021
>emb|BX649585.4| Zebrafish DNA sequence from clone CH211-123B7 in linkage group 22, complete sequence Length = 153749 Score = 42.1 bits (21), Expect = 6.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 66 tccgtccgtccgtccgtccta 86 ||||||||||||||||||||| Sbjct: 66769 tccgtccgtccgtccgtccta 66789
>gb|AC154669.2| Mus musculus BAC clone RP24-289P23 from 14, complete sequence Length = 149684 Score = 42.1 bits (21), Expect = 6.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 1117 cagggaaggaggcagggaacgaggc 1141 ||||||||||||||||||| ||||| Sbjct: 111129 cagggaaggaggcagggaaggaggc 111105 Score = 42.1 bits (21), Expect = 6.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 1117 cagggaaggaggcagggaacgaggc 1141 ||||||||||||||||||| ||||| Sbjct: 111141 cagggaaggaggcagggaaggaggc 111117
>gb|AY112523.1| Zea mays CL966_1 mRNA sequence Length = 1528 Score = 42.1 bits (21), Expect = 6.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 1187 catcaaggtcagcgacggcgaggtg 1211 ||||||||||||||||| ||||||| Sbjct: 728 catcaaggtcagcgacgacgaggtg 752
>gb|AE016796.1| Vibrio vulnificus CMCP6 chromosome II, complete sequence Length = 1844853 Score = 42.1 bits (21), Expect = 6.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 1605 tataaagctgagttgtatgagttga 1629 |||||||| |||||||||||||||| Sbjct: 869526 tataaagcggagttgtatgagttga 869502
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 42.1 bits (21), Expect = 6.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1200 gacggcgaggtgctgaccatc 1220 ||||||||||||||||||||| Sbjct: 3525151 gacggcgaggtgctgaccatc 3525131
>gb|AC005447.1|AC005447 Drosophila melanogaster, chromosome 2R, region 43E5-43E10, P1 clone DS03503, complete sequence Length = 77907 Score = 42.1 bits (21), Expect = 6.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 66 tccgtccgtccgtccgtccta 86 ||||||||||||||||||||| Sbjct: 35526 tccgtccgtccgtccgtccta 35546
>emb|BX000502.2|CNS08CDS Oryza sativa chromosome 12, . BAC OSJNBb0041E01 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 132026 Score = 42.1 bits (21), Expect = 6.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 64 cttccgtccgtccgtccgtcc 84 ||||||||||||||||||||| Sbjct: 103129 cttccgtccgtccgtccgtcc 103149
>emb|BX000504.2|CNS08CDU Oryza sativa chromosome 12, . BAC OJ1239_F07 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 104307 Score = 42.1 bits (21), Expect = 6.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 64 cttccgtccgtccgtccgtcc 84 ||||||||||||||||||||| Sbjct: 29566 cttccgtccgtccgtccgtcc 29586 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 252,937,041 Number of extensions: 13135134 Number of successful extensions: 259586 Number of sequences better than 10.0: 87 Number of HSP's gapped: 259519 Number of HSP's successfully gapped: 109 Length of query: 1652 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 1629 Effective length of database: 18,503,978,556 Effective search space: 30142981067724 Effective search space used: 30142981067724 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)