ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf17a16 |
|---|---|
| Clone Library Name | barley_pub |
>Q6DII2:SFRS1_XENTR Splicing factor, arginine/serine-rich 1 - Xenopus tropicalis| (Western clawed frog) (Silurana tropicalis) Length = 267 Score = 84.0 bits (206), Expect = 1e-15 Identities = 39/74 (52%), Positives = 53/74 (71%), Gaps = 5/74 (6%) Frame = +3 Query: 108 RLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE-----FAFVEFSDPRDADEARYNLDG 272 R+YVG LP RT+D+ED+F +YG +R +D+K+ FAFVEF DPRDA++A Y DG Sbjct: 17 RIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDG 76 Query: 273 RDFDGSRMIVEFAK 314 D+DG R+ VEF + Sbjct: 77 YDYDGYRLRVEFPR 90
>Q5R7H2:SFRS1_PONPY Splicing factor, arginine/serine-rich 1 - Pongo pygmaeus| (Orangutan) Length = 248 Score = 84.0 bits (206), Expect = 1e-15 Identities = 39/74 (52%), Positives = 53/74 (71%), Gaps = 5/74 (6%) Frame = +3 Query: 108 RLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE-----FAFVEFSDPRDADEARYNLDG 272 R+YVG LP RT+D+ED+F +YG +R +D+K+ FAFVEF DPRDA++A Y DG Sbjct: 17 RIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDG 76 Query: 273 RDFDGSRMIVEFAK 314 D+DG R+ VEF + Sbjct: 77 YDYDGYRLRVEFPR 90
>Q3YLA6:SFRS1_PIG Splicing factor, arginine/serine-rich 1 - Sus scrofa (Pig)| Length = 248 Score = 84.0 bits (206), Expect = 1e-15 Identities = 39/74 (52%), Positives = 53/74 (71%), Gaps = 5/74 (6%) Frame = +3 Query: 108 RLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE-----FAFVEFSDPRDADEARYNLDG 272 R+YVG LP RT+D+ED+F +YG +R +D+K+ FAFVEF DPRDA++A Y DG Sbjct: 17 RIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDG 76 Query: 273 RDFDGSRMIVEFAK 314 D+DG R+ VEF + Sbjct: 77 YDYDGYRLRVEFPR 90
>Q6PDM2:SFRS1_MOUSE Splicing factor, arginine/serine-rich 1 - Mus musculus (Mouse)| Length = 248 Score = 84.0 bits (206), Expect = 1e-15 Identities = 39/74 (52%), Positives = 53/74 (71%), Gaps = 5/74 (6%) Frame = +3 Query: 108 RLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE-----FAFVEFSDPRDADEARYNLDG 272 R+YVG LP RT+D+ED+F +YG +R +D+K+ FAFVEF DPRDA++A Y DG Sbjct: 17 RIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDG 76 Query: 273 RDFDGSRMIVEFAK 314 D+DG R+ VEF + Sbjct: 77 YDYDGYRLRVEFPR 90
>Q07955:SFRS1_HUMAN Splicing factor, arginine/serine-rich 1 - Homo sapiens (Human)| Length = 248 Score = 84.0 bits (206), Expect = 1e-15 Identities = 39/74 (52%), Positives = 53/74 (71%), Gaps = 5/74 (6%) Frame = +3 Query: 108 RLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE-----FAFVEFSDPRDADEARYNLDG 272 R+YVG LP RT+D+ED+F +YG +R +D+K+ FAFVEF DPRDA++A Y DG Sbjct: 17 RIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDG 76 Query: 273 RDFDGSRMIVEFAK 314 D+DG R+ VEF + Sbjct: 77 YDYDGYRLRVEFPR 90
>Q5ZML3:SFRS1_CHICK Splicing factor, arginine/serine-rich 1 - Gallus gallus (Chicken)| Length = 257 Score = 84.0 bits (206), Expect = 1e-15 Identities = 39/74 (52%), Positives = 53/74 (71%), Gaps = 5/74 (6%) Frame = +3 Query: 108 RLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE-----FAFVEFSDPRDADEARYNLDG 272 R+YVG LP RT+D+ED+F +YG +R +D+K+ FAFVEF DPRDA++A Y DG Sbjct: 17 RIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDG 76 Query: 273 RDFDGSRMIVEFAK 314 D+DG R+ VEF + Sbjct: 77 YDYDGYRLRVEFPR 90
>Q0VCY7:SFRS1_BOVIN Splicing factor, arginine/serine-rich 1 - Bos taurus (Bovine)| Length = 248 Score = 84.0 bits (206), Expect = 1e-15 Identities = 39/74 (52%), Positives = 53/74 (71%), Gaps = 5/74 (6%) Frame = +3 Query: 108 RLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE-----FAFVEFSDPRDADEARYNLDG 272 R+YVG LP RT+D+ED+F +YG +R +D+K+ FAFVEF DPRDA++A Y DG Sbjct: 17 RIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDG 76 Query: 273 RDFDGSRMIVEFAK 314 D+DG R+ VEF + Sbjct: 77 YDYDGYRLRVEFPR 90
>Q6NYA0:SFRS1_DANRE Splicing factor, arginine/serine-rich 1 - Danio rerio (Zebrafish)| (Brachydanio rerio) Length = 245 Score = 83.6 bits (205), Expect = 2e-15 Identities = 39/74 (52%), Positives = 53/74 (71%), Gaps = 5/74 (6%) Frame = +3 Query: 108 RLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE-----FAFVEFSDPRDADEARYNLDG 272 R+YVG LP RT+D+ED+F +YG +R +D+K+ FAFVEF DPRDA++A Y DG Sbjct: 16 RIYVGNLPPDIRTKDVEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDG 75 Query: 273 RDFDGSRMIVEFAK 314 D+DG R+ VEF + Sbjct: 76 YDYDGYRLRVEFPR 89
>Q7SXP4:SF1L1_DANRE Splicing factor, arginine/serine-rich 1-like protein 1 - Danio| rerio (Zebrafish) (Brachydanio rerio) Length = 245 Score = 82.8 bits (203), Expect = 3e-15 Identities = 39/74 (52%), Positives = 53/74 (71%), Gaps = 5/74 (6%) Frame = +3 Query: 108 RLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE-----FAFVEFSDPRDADEARYNLDG 272 R+YVG LP RT+D+ED+F +YG +R +D+K+ FAFVEF DPRDA++A Y DG Sbjct: 16 RIYVGNLPPDIRTKDVEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYARDG 75 Query: 273 RDFDGSRMIVEFAK 314 D+DG R+ VEF + Sbjct: 76 YDYDGYRLRVEFPR 89
>Q9D0B0:SFRS9_MOUSE Splicing factor, arginine/serine-rich 9 - Mus musculus (Mouse)| Length = 222 Score = 79.7 bits (195), Expect = 2e-14 Identities = 38/77 (49%), Positives = 53/77 (68%), Gaps = 5/77 (6%) Frame = +3 Query: 99 GNTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE-----FAFVEFSDPRDADEARYN 263 G+ R+YVG LPS R +DLEDLF +YGR+R +++K+ FAFV F DPRDA++A Y Sbjct: 13 GDGRIYVGNLPSDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFEDPRDAEDAIYG 72 Query: 264 LDGRDFDGSRMIVEFAK 314 +G D+ R+ VEF + Sbjct: 73 RNGYDYGQCRLRVEFPR 89
>Q5PPI1:SFRS9_RAT Splicing factor, arginine/serine-rich 9 - Rattus norvegicus (Rat)| Length = 221 Score = 78.6 bits (192), Expect = 5e-14 Identities = 37/77 (48%), Positives = 53/77 (68%), Gaps = 5/77 (6%) Frame = +3 Query: 99 GNTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE-----FAFVEFSDPRDADEARYN 263 G+ R+YVG LP+ R +DLEDLF +YGR+R +++K+ FAFV F DPRDA++A Y Sbjct: 12 GDGRIYVGNLPTDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFEDPRDAEDAIYG 71 Query: 264 LDGRDFDGSRMIVEFAK 314 +G D+ R+ VEF + Sbjct: 72 RNGYDYGQCRLRVEFPR 88
>Q13242:SFRS9_HUMAN Splicing factor, arginine/serine-rich 9 - Homo sapiens (Human)| Length = 221 Score = 78.6 bits (192), Expect = 5e-14 Identities = 37/77 (48%), Positives = 53/77 (68%), Gaps = 5/77 (6%) Frame = +3 Query: 99 GNTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE-----FAFVEFSDPRDADEARYN 263 G+ R+YVG LP+ R +DLEDLF +YGR+R +++K+ FAFV F DPRDA++A Y Sbjct: 12 GDGRIYVGNLPTDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFEDPRDAEDAIYG 71 Query: 264 LDGRDFDGSRMIVEFAK 314 +G D+ R+ VEF + Sbjct: 72 RNGYDYGQCRLRVEFPR 88
>Q09167:SFRS5_RAT Splicing factor, arginine/serine-rich 5 - Rattus norvegicus (Rat)| Length = 269 Score = 76.3 bits (186), Expect = 3e-13 Identities = 33/69 (47%), Positives = 47/69 (68%) Frame = +3 Query: 108 RLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHEFAFVEFSDPRDADEARYNLDGRDFDG 287 R+++GRL R +D+E F YGR+R +D+K F FVEF DPRDAD+A Y LDG++ Sbjct: 5 RVFIGRLNPAAREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGKELCS 64 Query: 288 SRMIVEFAK 314 R+ +E A+ Sbjct: 65 ERVTIEHAR 73
>O35326:SFRS5_MOUSE Splicing factor, arginine/serine-rich 5 - Mus musculus (Mouse)| Length = 270 Score = 76.3 bits (186), Expect = 3e-13 Identities = 33/69 (47%), Positives = 47/69 (68%) Frame = +3 Query: 108 RLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHEFAFVEFSDPRDADEARYNLDGRDFDG 287 R+++GRL R +D+E F YGR+R +D+K F FVEF DPRDAD+A Y LDG++ Sbjct: 5 RVFIGRLNPAAREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGKELCS 64 Query: 288 SRMIVEFAK 314 R+ +E A+ Sbjct: 65 ERVTIEHAR 73
>Q13243:SFRS5_HUMAN Splicing factor, arginine/serine-rich 5 - Homo sapiens (Human)| Length = 272 Score = 76.3 bits (186), Expect = 3e-13 Identities = 33/69 (47%), Positives = 47/69 (68%) Frame = +3 Query: 108 RLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHEFAFVEFSDPRDADEARYNLDGRDFDG 287 R+++GRL R +D+E F YGR+R +D+K F FVEF DPRDAD+A Y LDG++ Sbjct: 5 RVFIGRLNPAAREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGKELCS 64 Query: 288 SRMIVEFAK 314 R+ +E A+ Sbjct: 65 ERVTIEHAR 73
>Q8VE97:SFRS4_MOUSE Splicing factor, arginine/serine-rich 4 - Mus musculus (Mouse)| Length = 489 Score = 76.3 bits (186), Expect = 3e-13 Identities = 35/69 (50%), Positives = 49/69 (71%) Frame = +3 Query: 108 RLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHEFAFVEFSDPRDADEARYNLDGRDFDG 287 R+Y+GRL + R RD+E F YG++ VD+K+ + FVEF D RDAD+A Y L+G+D G Sbjct: 3 RVYIGRLSYQARERDVERFFKGYGKILEVDLKNGYGFVEFDDLRDADDAVYELNGKDLCG 62 Query: 288 SRMIVEFAK 314 R+IVE A+ Sbjct: 63 ERVIVEHAR 71
>Q08170:SFRS4_HUMAN Splicing factor, arginine/serine-rich 4 - Homo sapiens (Human)| Length = 494 Score = 76.3 bits (186), Expect = 3e-13 Identities = 35/69 (50%), Positives = 49/69 (71%) Frame = +3 Query: 108 RLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHEFAFVEFSDPRDADEARYNLDGRDFDG 287 R+Y+GRL + R RD+E F YG++ VD+K+ + FVEF D RDAD+A Y L+G+D G Sbjct: 3 RVYIGRLSYQARERDVERFFKGYGKILEVDLKNGYGFVEFDDLRDADDAVYELNGKDLCG 62 Query: 288 SRMIVEFAK 314 R+IVE A+ Sbjct: 63 ERVIVEHAR 71
>Q9NEW6:RSP3_CAEEL Probable splicing factor, arginine/serine-rich 3 - Caenorhabditis| elegans Length = 258 Score = 75.1 bits (183), Expect = 6e-13 Identities = 39/87 (44%), Positives = 56/87 (64%), Gaps = 4/87 (4%) Frame = +3 Query: 66 MPRYDERDRYGGNTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKH----EFAFVEFSD 233 MPR D+ ++YVG LP R +++ED+F +YGR+++VD+K FAFVEF D Sbjct: 1 MPRGGSEDQ-----KVYVGNLPGDVREKEVEDIFHKYGRIKYVDIKSGRGPAFAFVEFED 55 Query: 234 PRDADEARYNLDGRDFDGSRMIVEFAK 314 RDA++A DG +FDG R+ VEF + Sbjct: 56 HRDAEDAVRARDGYEFDGRRIRVEFTR 82
>Q13247:SFRS6_HUMAN Splicing factor, arginine/serine-rich 6 - Homo sapiens (Human)| Length = 344 Score = 74.3 bits (181), Expect = 1e-12 Identities = 33/69 (47%), Positives = 48/69 (69%) Frame = +3 Query: 108 RLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHEFAFVEFSDPRDADEARYNLDGRDFDG 287 R+Y+GRL R +D++ F YGR+ VD+K+ + FVEF D RDAD+A Y L+G++ G Sbjct: 3 RVYIGRLSYNVREKDIQRFFSGYGRLLEVDLKNGYGFVEFEDSRDADDAVYELNGKELCG 62 Query: 288 SRMIVEFAK 314 R+IVE A+ Sbjct: 63 ERVIVEHAR 71
>Q23120:RSP2_CAEEL Probable splicing factor, arginine/serine-rich 2 - Caenorhabditis| elegans Length = 281 Score = 74.3 bits (181), Expect = 1e-12 Identities = 33/69 (47%), Positives = 50/69 (72%) Frame = +3 Query: 108 RLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHEFAFVEFSDPRDADEARYNLDGRDFDG 287 R+Y+GRLP+R RD+E F YG++ V MK+ F FV+F D RDAD+A ++L+G++ G Sbjct: 3 RVYIGRLPNRASDRDVEHFFRGYGKLSDVIMKNGFGFVDFQDQRDADDAVHDLNGKELCG 62 Query: 288 SRMIVEFAK 314 R+I+EF + Sbjct: 63 ERVILEFPR 71
>Q16629:SFRS7_HUMAN Splicing factor, arginine/serine-rich 7 - Homo sapiens (Human)| Length = 238 Score = 73.6 bits (179), Expect = 2e-12 Identities = 49/133 (36%), Positives = 63/133 (47%), Gaps = 3/133 (2%) Frame = +3 Query: 66 MPRYDERDRYGGNTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE---FAFVEFSDP 236 M RY RYGG T++YVG L + +LE F YG +R V + FAFVEF DP Sbjct: 1 MSRYG---RYGGETKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDP 57 Query: 237 RDADEARYNLDGRDFDGSRMIVEFAKXXXXXXXXXXXXXXXXXXXXXXXXXXPPPGSGRC 416 RDA++A LDG+ GSR+ VE + P + RC Sbjct: 58 RDAEDAVRGLDGKVICGSRVRVELS-----------TGMPRRSRFDRPPARRPFDPNDRC 106 Query: 417 FNCGIDGHWARDC 455 + CG GH+A DC Sbjct: 107 YECGEKGHYAYDC 119
>Q3T106:SFRS7_BOVIN Splicing factor, arginine/serine-rich 7 - Bos taurus (Bovine)| Length = 235 Score = 73.6 bits (179), Expect = 2e-12 Identities = 49/133 (36%), Positives = 63/133 (47%), Gaps = 3/133 (2%) Frame = +3 Query: 66 MPRYDERDRYGGNTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE---FAFVEFSDP 236 M RY RYGG T++YVG L + +LE F YG +R V + FAFVEF DP Sbjct: 1 MSRYG---RYGGETKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDP 57 Query: 237 RDADEARYNLDGRDFDGSRMIVEFAKXXXXXXXXXXXXXXXXXXXXXXXXXXPPPGSGRC 416 RDA++A LDG+ GSR+ VE + P + RC Sbjct: 58 RDAEDAVRGLDGKVICGSRVRVELS-----------TGMPRRSRFDRPPARRPFDPNDRC 106 Query: 417 FNCGIDGHWARDC 455 + CG GH+A DC Sbjct: 107 YECGEKGHYAYDC 119
>Q3B7L6:SFRS6_BOVIN Splicing factor, arginine/serine-rich 6 - Bos taurus (Bovine)| Length = 345 Score = 73.2 bits (178), Expect = 2e-12 Identities = 32/69 (46%), Positives = 48/69 (69%) Frame = +3 Query: 108 RLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHEFAFVEFSDPRDADEARYNLDGRDFDG 287 R+Y+GRL R +D++ F YGR+ +D+K+ + FVEF D RDAD+A Y L+G++ G Sbjct: 3 RVYIGRLSYNVREKDIQRFFSGYGRLLGIDLKNGYGFVEFEDSRDADDAVYELNGKELCG 62 Query: 288 SRMIVEFAK 314 R+IVE A+ Sbjct: 63 ERVIVEHAR 71
>Q23121:RSP1_CAEEL Probable splicing factor, arginine/serine-rich 1 - Caenorhabditis| elegans Length = 312 Score = 73.2 bits (178), Expect = 2e-12 Identities = 31/69 (44%), Positives = 51/69 (73%) Frame = +3 Query: 108 RLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHEFAFVEFSDPRDADEARYNLDGRDFDG 287 R+Y+GRL SR +D+E F YG++R V +K+ F FVEF D RDA++A ++L+G++ G Sbjct: 4 RIYIGRLTSRVSEKDIEHFFRGYGQIRDVLLKNGFGFVEFDDKRDAEDAVHDLNGKELGG 63 Query: 288 SRMIVEFAK 314 R+I++++K Sbjct: 64 ERVILDYSK 72
>Q10021:RSP5_CAEEL Probable splicing factor, arginine/serine-rich 5 - Caenorhabditis| elegans Length = 208 Score = 72.4 bits (176), Expect = 4e-12 Identities = 32/71 (45%), Positives = 51/71 (71%), Gaps = 2/71 (2%) Frame = +3 Query: 108 RLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHEFAFVEFSDPRDADEARYNLDGRDFDG 287 RLY+G++P R RD+E YG++ ++ MK+ FAFV+F D RDA++A ++LDG+ +G Sbjct: 3 RLYLGKIPYNARERDVERFLKGYGKINNISMKYGFAFVDFEDSRDAEDACHDLDGKTMEG 62 Query: 288 S--RMIVEFAK 314 S R++VE A+ Sbjct: 63 SSMRLVVEMAR 73
>P26686:SRR55_DROME Serine-arginine protein 55 - Drosophila melanogaster (Fruit fly)| Length = 376 Score = 71.6 bits (174), Expect = 6e-12 Identities = 35/70 (50%), Positives = 48/70 (68%) Frame = +3 Query: 105 TRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHEFAFVEFSDPRDADEARYNLDGRDFD 284 +R+YVG LP R RDLE F YGR R + +K+ + FVEF D RDAD+A Y L+G++ Sbjct: 4 SRVYVGGLPYGVRERDLERFFKGYGRTRDILIKNGYGFVEFEDYRDADDAVYELNGKELL 63 Query: 285 GSRMIVEFAK 314 G R++VE A+ Sbjct: 64 GERVVVEPAR 73
>O22315:SFRS1_ARATH Pre-mRNA-splicing factor SF2 - Arabidopsis thaliana (Mouse-ear| cress) Length = 303 Score = 70.9 bits (172), Expect = 1e-11 Identities = 36/72 (50%), Positives = 47/72 (65%), Gaps = 5/72 (6%) Frame = +3 Query: 111 LYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE-----FAFVEFSDPRDADEARYNLDGR 275 +YVG LP R R++EDLF +YG V +D+K +AFVEF D RDA++A + DG Sbjct: 9 VYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAIHGRDGY 68 Query: 276 DFDGSRMIVEFA 311 DFDG R+ VE A Sbjct: 69 DFDGHRLRVELA 80 Score = 31.6 bits (70), Expect = 7.2 Identities = 16/34 (47%), Positives = 21/34 (61%) Frame = +3 Query: 873 SRSPAPRENSRSPMKADSPNNMSPAANGRSPSPR 974 SRSP + + RSP K+ S + P + RSPSPR Sbjct: 233 SRSPKAKSSRRSPAKSTS-RSPGPRSKSRSPSPR 265
>Q8BL97:SFRS7_MOUSE Splicing factor, arginine/serine-rich 7 - Mus musculus (Mouse)| Length = 267 Score = 64.7 bits (156), Expect = 8e-10 Identities = 44/126 (34%), Positives = 60/126 (47%), Gaps = 5/126 (3%) Frame = +3 Query: 93 YGGN--TRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE---FAFVEFSDPRDADEAR 257 +GG+ T++YVG L + +LE F YG +R V + FAFVEF DPRDA++A Sbjct: 34 WGGDSETKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAV 93 Query: 258 YNLDGRDFDGSRMIVEFAKXXXXXXXXXXXXXXXXXXXXXXXXXXPPPGSGRCFNCGIDG 437 LDG+ GSR+ VE + P + RC+ CG G Sbjct: 94 RGLDGKVICGSRVRVELS-----------TGMPRRSRFDRPPARRPFDPNDRCYECGEKG 142 Query: 438 HWARDC 455 H+A DC Sbjct: 143 HYAYDC 148
>P92964:RSP31_ARATH Arginine/serine-rich-splicing factor RSP31 - Arabidopsis thaliana| (Mouse-ear cress) Length = 264 Score = 60.8 bits (146), Expect = 1e-08 Identities = 34/70 (48%), Positives = 43/70 (61%), Gaps = 2/70 (2%) Frame = +3 Query: 111 LYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHEFAFVEFSDPRDADEARYNLDGRDF--D 284 ++VG TR DLE LF +YGRV VDMK +AFV F D RDA++A LD F + Sbjct: 4 VFVGNFEYETRQSDLERLFDKYGRVDRVDMKSGYAFVYFEDERDAEDAIRKLDNFPFGYE 63 Query: 285 GSRMIVEFAK 314 R+ VE+AK Sbjct: 64 KRRLSVEWAK 73 Score = 38.5 bits (88), Expect = 0.059 Identities = 17/42 (40%), Positives = 26/42 (61%) Frame = +3 Query: 129 PSRTRTRDLEDLFGRYGRVRHVDMKHEFAFVEFSDPRDADEA 254 P RT+ D+E F YG+V +V ++ F+FV+F DA +A Sbjct: 102 PIRTKEHDIEKHFEPYGKVTNVRIRRNFSFVQFETQEDATKA 143
>P78814:SRP2_SCHPO Pre-mRNA-splicing factor srp2 - Schizosaccharomyces pombe (Fission| yeast) Length = 365 Score = 59.7 bits (143), Expect = 2e-08 Identities = 28/70 (40%), Positives = 43/70 (61%) Frame = +3 Query: 105 TRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHEFAFVEFSDPRDADEARYNLDGRDFD 284 TRL+VGR+P + D+ D F YG++ + + F FVE D RDA + + G++F Sbjct: 4 TRLFVGRIPPQATREDMMDFFKGYGQILDCKLMNGFGFVEVEDARDARDIVNDFQGKEFM 63 Query: 285 GSRMIVEFAK 314 GSR++VE A+ Sbjct: 64 GSRIVVEPAR 73
>Q94901:LARK_DROME RNA-binding protein lark - Drosophila melanogaster (Fruit fly)| Length = 352 Score = 59.7 bits (143), Expect = 2e-08 Identities = 33/120 (27%), Positives = 53/120 (44%), Gaps = 3/120 (2%) Frame = +3 Query: 105 TRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHEFAFVEFSDPRDADEARYNLDGRDFD 284 T+++VG L +TR ++ +LF +YG V D+ + FV D +A L+GR D Sbjct: 86 TKIFVGNLTDKTRAPEVRELFQKYGTVVECDIVRNYGFVHLDCVGDVQDAIKELNGRVVD 145 Query: 285 GSRMIVEFAKXXXXXXXXXXXXXXXXXXXXXXXXXXPPPGSG---RCFNCGIDGHWARDC 455 G + V+ + P PG G +C+ CG GHW+++C Sbjct: 146 GQPLKVQVS----------------------TSRVRPKPGMGDPEQCYRCGRSGHWSKEC 183 Score = 42.4 bits (98), Expect = 0.004 Identities = 22/72 (30%), Positives = 36/72 (50%) Frame = +3 Query: 99 GNTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHEFAFVEFSDPRDADEARYNLDGRD 278 G +L++G L +T+ +L LF +YG V D+ + FV + +A NL+G Sbjct: 5 GTFKLFIGNLDEKTQATELRALFEKYGTVVECDVVKNYGFVHMETEQQGRDAIQNLNGYT 64 Query: 279 FDGSRMIVEFAK 314 + + VE AK Sbjct: 65 LNEFAIKVEAAK 76
>Q18409:RSP6_CAEEL Probable splicing factor, arginine/serine-rich 6 - Caenorhabditis| elegans Length = 179 Score = 57.8 bits (138), Expect = 9e-08 Identities = 31/73 (42%), Positives = 46/73 (63%), Gaps = 3/73 (4%) Frame = +3 Query: 102 NTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE---FAFVEFSDPRDADEARYNLDG 272 + ++YVG LPS +++LE++F R+GR+R V + FAFVE+ D RDA++A LDG Sbjct: 2 DAKVYVGGLPSDATSQELEEIFDRFGRIRKVWVARRPPGFAFVEYDDVRDAEDAVRALDG 61 Query: 273 RDFDGSRMIVEFA 311 G R VE + Sbjct: 62 SRICGVRARVELS 74
>Q9BDY9:RBM4_RABIT RNA-binding protein 4 - Oryctolagus cuniculus (Rabbit)| Length = 359 Score = 56.6 bits (135), Expect = 2e-07 Identities = 34/127 (26%), Positives = 54/127 (42%), Gaps = 3/127 (2%) Frame = +3 Query: 84 RDRYGGNTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHEFAFVEFSDPRDADEARYN 263 +++ +T+L+VG + ++L F YG V D+ ++AFV DA EA Sbjct: 71 KNKSKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRG 130 Query: 264 LDGRDFDGSRMIVEFAKXXXXXXXXXXXXXXXXXXXXXXXXXXPPPGSG---RCFNCGID 434 LD +F G RM V+ + PG G C+ CG + Sbjct: 131 LDNTEFQGKRMHVQLS----------------------TSRLRTAPGMGDQSGCYRCGKE 168 Query: 435 GHWARDC 455 GHW+++C Sbjct: 169 GHWSKEC 175 Score = 42.7 bits (99), Expect = 0.003 Identities = 21/69 (30%), Positives = 35/69 (50%) Frame = +3 Query: 108 RLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHEFAFVEFSDPRDADEARYNLDGRDFDG 287 +L++G LP +++ LF +YG+V D+ + FV D A++A NL G Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62 Query: 288 SRMIVEFAK 314 + VE +K Sbjct: 63 VNINVEASK 71
>Q8C7Q4:RBM4_MOUSE RNA-binding protein 4 - Mus musculus (Mouse)| Length = 361 Score = 56.6 bits (135), Expect = 2e-07 Identities = 34/127 (26%), Positives = 54/127 (42%), Gaps = 3/127 (2%) Frame = +3 Query: 84 RDRYGGNTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHEFAFVEFSDPRDADEARYN 263 +++ +T+L+VG + ++L F YG V D+ ++AFV DA EA Sbjct: 71 KNKSKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRG 130 Query: 264 LDGRDFDGSRMIVEFAKXXXXXXXXXXXXXXXXXXXXXXXXXXPPPGSG---RCFNCGID 434 LD +F G RM V+ + PG G C+ CG + Sbjct: 131 LDNTEFQGKRMHVQLS----------------------TSRLRTAPGMGDQSGCYRCGKE 168 Query: 435 GHWARDC 455 GHW+++C Sbjct: 169 GHWSKEC 175 Score = 42.7 bits (99), Expect = 0.003 Identities = 21/69 (30%), Positives = 35/69 (50%) Frame = +3 Query: 108 RLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHEFAFVEFSDPRDADEARYNLDGRDFDG 287 +L++G LP +++ LF +YG+V D+ + FV D A++A NL G Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62 Query: 288 SRMIVEFAK 314 + VE +K Sbjct: 63 VNINVEASK 71
>Q4R979:RBM4_MACFA RNA-binding protein 4 - Macaca fascicularis (Crab eating macaque)| (Cynomolgus monkey) Length = 364 Score = 56.6 bits (135), Expect = 2e-07 Identities = 34/121 (28%), Positives = 51/121 (42%), Gaps = 3/121 (2%) Frame = +3 Query: 102 NTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHEFAFVEFSDPRDADEARYNLDGRDF 281 +T+L+VG + ++L F YG V D+ ++AFV DA EA LD +F Sbjct: 77 STKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEF 136 Query: 282 DGSRMIVEFAKXXXXXXXXXXXXXXXXXXXXXXXXXXPPPGSG---RCFNCGIDGHWARD 452 G RM V+ + PG G C+ CG +GHW+++ Sbjct: 137 QGKRMHVQLS----------------------TSRLRTAPGMGDQSGCYRCGKEGHWSKE 174 Query: 453 C 455 C Sbjct: 175 C 175 Score = 42.7 bits (99), Expect = 0.003 Identities = 21/69 (30%), Positives = 35/69 (50%) Frame = +3 Query: 108 RLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHEFAFVEFSDPRDADEARYNLDGRDFDG 287 +L++G LP +++ LF +YG+V D+ + FV D A++A NL G Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62 Query: 288 SRMIVEFAK 314 + VE +K Sbjct: 63 VNINVEASK 71
>Q9BWF3:RBM4_HUMAN RNA-binding protein 4 - Homo sapiens (Human)| Length = 364 Score = 56.6 bits (135), Expect = 2e-07 Identities = 34/121 (28%), Positives = 51/121 (42%), Gaps = 3/121 (2%) Frame = +3 Query: 102 NTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHEFAFVEFSDPRDADEARYNLDGRDF 281 +T+L+VG + ++L F YG V D+ ++AFV DA EA LD +F Sbjct: 77 STKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEF 136 Query: 282 DGSRMIVEFAKXXXXXXXXXXXXXXXXXXXXXXXXXXPPPGSG---RCFNCGIDGHWARD 452 G RM V+ + PG G C+ CG +GHW+++ Sbjct: 137 QGKRMHVQLS----------------------TSRLRTAPGMGDQSGCYRCGKEGHWSKE 174 Query: 453 C 455 C Sbjct: 175 C 175 Score = 42.7 bits (99), Expect = 0.003 Identities = 21/69 (30%), Positives = 35/69 (50%) Frame = +3 Query: 108 RLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHEFAFVEFSDPRDADEARYNLDGRDFDG 287 +L++G LP +++ LF +YG+V D+ + FV D A++A NL G Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62 Query: 288 SRMIVEFAK 314 + VE +K Sbjct: 63 VNINVEASK 71
>Q3MHX3:RBM4_BOVIN RNA-binding protein 4 - Bos taurus (Bovine)| Length = 362 Score = 56.6 bits (135), Expect = 2e-07 Identities = 34/121 (28%), Positives = 51/121 (42%), Gaps = 3/121 (2%) Frame = +3 Query: 102 NTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHEFAFVEFSDPRDADEARYNLDGRDF 281 +T+L+VG + ++L F YG V D+ ++AFV DA EA LD +F Sbjct: 77 STKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEF 136 Query: 282 DGSRMIVEFAKXXXXXXXXXXXXXXXXXXXXXXXXXXPPPGSG---RCFNCGIDGHWARD 452 G RM V+ + PG G C+ CG +GHW+++ Sbjct: 137 QGKRMHVQLS----------------------TSRLRTAPGMGDQSGCYRCGKEGHWSKE 174 Query: 453 C 455 C Sbjct: 175 C 175 Score = 42.7 bits (99), Expect = 0.003 Identities = 21/69 (30%), Positives = 35/69 (50%) Frame = +3 Query: 108 RLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHEFAFVEFSDPRDADEARYNLDGRDFDG 287 +L++G LP +++ LF +YG+V D+ + FV D A++A NL G Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62 Query: 288 SRMIVEFAK 314 + VE +K Sbjct: 63 VNINVEASK 71
>Q64LC9:RBM4B_RAT RNA-binding protein 4B - Rattus norvegicus (Rat)| Length = 357 Score = 56.6 bits (135), Expect = 2e-07 Identities = 34/127 (26%), Positives = 54/127 (42%), Gaps = 3/127 (2%) Frame = +3 Query: 84 RDRYGGNTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHEFAFVEFSDPRDADEARYN 263 +++ +T+L+VG + ++L F YG V D+ ++AFV DA EA Sbjct: 71 KNKSKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRG 130 Query: 264 LDGRDFDGSRMIVEFAKXXXXXXXXXXXXXXXXXXXXXXXXXXPPPGSG---RCFNCGID 434 LD +F G RM V+ + PG G C+ CG + Sbjct: 131 LDNTEFQGKRMHVQLS----------------------TSRLRTAPGMGDQSGCYRCGKE 168 Query: 435 GHWARDC 455 GHW+++C Sbjct: 169 GHWSKEC 175 Score = 42.7 bits (99), Expect = 0.003 Identities = 21/69 (30%), Positives = 35/69 (50%) Frame = +3 Query: 108 RLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHEFAFVEFSDPRDADEARYNLDGRDFDG 287 +L++G LP +++ LF +YG+V D+ + FV D A++A NL G Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62 Query: 288 SRMIVEFAK 314 + VE +K Sbjct: 63 VNINVEASK 71
>Q06AT9:RBM4B_PIG RNA-binding protein 4B - Sus scrofa (Pig)| Length = 359 Score = 56.6 bits (135), Expect = 2e-07 Identities = 34/127 (26%), Positives = 54/127 (42%), Gaps = 3/127 (2%) Frame = +3 Query: 84 RDRYGGNTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHEFAFVEFSDPRDADEARYN 263 +++ +T+L+VG + ++L F YG V D+ ++AFV DA EA Sbjct: 71 KNKSKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRG 130 Query: 264 LDGRDFDGSRMIVEFAKXXXXXXXXXXXXXXXXXXXXXXXXXXPPPGSG---RCFNCGID 434 LD +F G RM V+ + PG G C+ CG + Sbjct: 131 LDNTEFQGKRMHVQLS----------------------TSRLRTAPGMGDQSGCYRCGKE 168 Query: 435 GHWARDC 455 GHW+++C Sbjct: 169 GHWSKEC 175 Score = 42.7 bits (99), Expect = 0.003 Identities = 21/69 (30%), Positives = 35/69 (50%) Frame = +3 Query: 108 RLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHEFAFVEFSDPRDADEARYNLDGRDFDG 287 +L++G LP +++ LF +YG+V D+ + FV D A++A NL G Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62 Query: 288 SRMIVEFAK 314 + VE +K Sbjct: 63 VNINVEASK 71
>Q8VE92:RBM4B_MOUSE RNA-binding protein 4B - Mus musculus (Mouse)| Length = 357 Score = 56.6 bits (135), Expect = 2e-07 Identities = 34/127 (26%), Positives = 54/127 (42%), Gaps = 3/127 (2%) Frame = +3 Query: 84 RDRYGGNTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHEFAFVEFSDPRDADEARYN 263 +++ +T+L+VG + ++L F YG V D+ ++AFV DA EA Sbjct: 71 KNKSKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRG 130 Query: 264 LDGRDFDGSRMIVEFAKXXXXXXXXXXXXXXXXXXXXXXXXXXPPPGSG---RCFNCGID 434 LD +F G RM V+ + PG G C+ CG + Sbjct: 131 LDNTEFQGKRMHVQLS----------------------TSRLRTAPGMGDQSGCYRCGKE 168 Query: 435 GHWARDC 455 GHW+++C Sbjct: 169 GHWSKEC 175 Score = 42.7 bits (99), Expect = 0.003 Identities = 21/69 (30%), Positives = 35/69 (50%) Frame = +3 Query: 108 RLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHEFAFVEFSDPRDADEARYNLDGRDFDG 287 +L++G LP +++ LF +YG+V D+ + FV D A++A NL G Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62 Query: 288 SRMIVEFAK 314 + VE +K Sbjct: 63 VNINVEASK 71
>Q9BQ04:RBM4B_HUMAN RNA-binding protein 4B - Homo sapiens (Human)| Length = 359 Score = 56.6 bits (135), Expect = 2e-07 Identities = 34/127 (26%), Positives = 54/127 (42%), Gaps = 3/127 (2%) Frame = +3 Query: 84 RDRYGGNTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHEFAFVEFSDPRDADEARYN 263 +++ +T+L+VG + ++L F YG V D+ ++AFV DA EA Sbjct: 71 KNKSKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRG 130 Query: 264 LDGRDFDGSRMIVEFAKXXXXXXXXXXXXXXXXXXXXXXXXXXPPPGSG---RCFNCGID 434 LD +F G RM V+ + PG G C+ CG + Sbjct: 131 LDNTEFQGKRMHVQLS----------------------TSRLRTAPGMGDQSGCYRCGKE 168 Query: 435 GHWARDC 455 GHW+++C Sbjct: 169 GHWSKEC 175 Score = 42.7 bits (99), Expect = 0.003 Identities = 21/69 (30%), Positives = 35/69 (50%) Frame = +3 Query: 108 RLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHEFAFVEFSDPRDADEARYNLDGRDFDG 287 +L++G LP +++ LF +YG+V D+ + FV D A++A NL G Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62 Query: 288 SRMIVEFAK 314 + VE +K Sbjct: 63 VNINVEASK 71
>P84104:SFRS3_MOUSE Splicing factor, arginine/serine-rich 3 - Mus musculus (Mouse)| Length = 164 Score = 56.2 bits (134), Expect = 3e-07 Identities = 34/79 (43%), Positives = 44/79 (55%), Gaps = 3/79 (3%) Frame = +3 Query: 84 RDRYGGNTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE---FAFVEFSDPRDADEA 254 RD + ++YVG L + +LE FG YG +R V + FAFVEF DPRDA +A Sbjct: 3 RDSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADA 62 Query: 255 RYNLDGRDFDGSRMIVEFA 311 LDGR G R+ VE + Sbjct: 63 VRELDGRTLCGCRVRVELS 81
>P84103:SFRS3_HUMAN Splicing factor, arginine/serine-rich 3 - Homo sapiens (Human)| Length = 164 Score = 56.2 bits (134), Expect = 3e-07 Identities = 34/79 (43%), Positives = 44/79 (55%), Gaps = 3/79 (3%) Frame = +3 Query: 84 RDRYGGNTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE---FAFVEFSDPRDADEA 254 RD + ++YVG L + +LE FG YG +R V + FAFVEF DPRDA +A Sbjct: 3 RDSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADA 62 Query: 255 RYNLDGRDFDGSRMIVEFA 311 LDGR G R+ VE + Sbjct: 63 VRELDGRTLCGCRVRVELS 81
>Q3SZR8:SFRS3_BOVIN Splicing factor, arginine/serine-rich 3 - Bos taurus (Bovine)| Length = 164 Score = 56.2 bits (134), Expect = 3e-07 Identities = 34/79 (43%), Positives = 44/79 (55%), Gaps = 3/79 (3%) Frame = +3 Query: 84 RDRYGGNTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE---FAFVEFSDPRDADEA 254 RD + ++YVG L + +LE FG YG +R V + FAFVEF DPRDA +A Sbjct: 3 RDSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADA 62 Query: 255 RYNLDGRDFDGSRMIVEFA 311 LDGR G R+ VE + Sbjct: 63 VRELDGRTLCGCRVRVELS 81
>Q02427:RBP1_DROME RNA-binding protein 1 - Drosophila melanogaster (Fruit fly)| Length = 144 Score = 56.2 bits (134), Expect = 3e-07 Identities = 35/85 (41%), Positives = 48/85 (56%), Gaps = 3/85 (3%) Frame = +3 Query: 66 MPRYDERDRYGGNTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE---FAFVEFSDP 236 MPRY E D ++YVG L S ++E F +YG +R+V + FAFVEF D Sbjct: 1 MPRYREWDLA---CKVYVGNLGSSASKHEIEGAFAKYGPLRNVWVARNPPGFAFVEFEDR 57 Query: 237 RDADEARYNLDGRDFDGSRMIVEFA 311 RDA++A LDG G+R+ VE + Sbjct: 58 RDAEDATRALDGTRCCGTRIRVEMS 82
>Q6IQ97:RBM4_DANRE RNA-binding protein 4 - Danio rerio (Zebrafish) (Brachydanio rerio)| Length = 419 Score = 56.2 bits (134), Expect = 3e-07 Identities = 39/136 (28%), Positives = 56/136 (41%), Gaps = 3/136 (2%) Frame = +3 Query: 102 NTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHEFAFVEFSDPRDADEARYNLDGRDF 281 +T+L+VG + S ++L F YG V D+ ++AFV DA EA LD F Sbjct: 77 STKLHVGNISSSCTNQELRAKFEEYGPVVECDIVKDYAFVHMERVEDAMEAISGLDNTAF 136 Query: 282 DGSRMIVEFAKXXXXXXXXXXXXXXXXXXXXXXXXXXPPPGSGR---CFNCGIDGHWARD 452 G M V+ + PG G C+ CG +GHW+++ Sbjct: 137 QGKLMSVKLS----------------------TSRLRTAPGMGERTGCYRCGQEGHWSKE 174 Query: 453 CKAGDWKNRCYRCGDS 500 C +N YR G S Sbjct: 175 CPLD--QNGSYREGPS 188 Score = 48.1 bits (113), Expect = 7e-05 Identities = 23/69 (33%), Positives = 35/69 (50%) Frame = +3 Query: 108 RLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHEFAFVEFSDPRDADEARYNLDGRDFDG 287 +++VG L T ++ LF +YG++ D+ F FV +ADEA NL +G Sbjct: 3 KIFVGNLSPNTTAEEIRSLFSQYGKISECDIVKNFGFVHMDSKSEADEAIQNLHHYMLNG 62 Query: 288 SRMIVEFAK 314 M VE +K Sbjct: 63 MAMNVEMSK 71
>Q3T0Q6:CNBP_BOVIN Cellular nucleic acid-binding protein - Bos taurus (Bovine)| Length = 170 Score = 54.3 bits (129), Expect = 1e-06 Identities = 23/58 (39%), Positives = 28/58 (48%), Gaps = 19/58 (32%) Frame = +3 Query: 405 SGRCFNCGIDGHWARDCKAGDWKNR-------------------CYRCGDSGHIERDC 521 S CF CG GHWAR+C G + R CYRCG+SGH+ +DC Sbjct: 3 SNECFKCGRSGHWARECPTGGGRGRGMRSRGRGFQFVSSSLPDICYRCGESGHLAKDC 60 Score = 53.1 bits (126), Expect = 2e-06 Identities = 20/36 (55%), Positives = 26/36 (72%) Frame = +3 Query: 414 CFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDC 521 C+NCG GH ARDC D + +CY CG+ GHI++DC Sbjct: 91 CYNCGKPGHLARDCDHAD-EQKCYSCGEFGHIQKDC 125 Score = 48.1 bits (113), Expect = 7e-05 Identities = 19/41 (46%), Positives = 26/41 (63%), Gaps = 2/41 (4%) Frame = +3 Query: 414 CFNCGIDGHWARDCK--AGDWKNRCYRCGDSGHIERDCQNS 530 C+NCG GH A+DCK + + CY CG GH+ RDC ++ Sbjct: 67 CYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHA 107 Score = 45.4 bits (106), Expect = 5e-04 Identities = 17/37 (45%), Positives = 23/37 (62%) Frame = +3 Query: 414 CFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDCQ 524 C+ CG GH A+DC + + CY CG GHI +DC+ Sbjct: 47 CYRCGESGHLAKDCDLQE--DACYNCGRGGHIAKDCK 81 Score = 45.4 bits (106), Expect = 5e-04 Identities = 18/37 (48%), Positives = 24/37 (64%) Frame = +3 Query: 411 RCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDC 521 +C+ CG GH A +C N CYRCG+SGH+ R+C Sbjct: 129 KCYRCGETGHVAINCSKTSEVN-CYRCGESGHLAREC 164 Score = 43.9 bits (102), Expect = 0.001 Identities = 16/40 (40%), Positives = 26/40 (65%) Frame = +3 Query: 411 RCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDCQNS 530 +C++CG GH +DC K +CYRCG++GH+ +C + Sbjct: 111 KCYSCGEFGHIQKDCT----KVKCYRCGETGHVAINCSKT 146
>P38159:HNRPG_HUMAN Heterogeneous nuclear ribonucleoprotein G - Homo sapiens (Human)| Length = 391 Score = 53.9 bits (128), Expect = 1e-06 Identities = 31/85 (36%), Positives = 46/85 (54%), Gaps = 8/85 (9%) Frame = +3 Query: 81 ERDRYGGNTRLYVGRLPSRTRTRDLEDLFGRYGRV--------RHVDMKHEFAFVEFSDP 236 E DR G +L++G L + T + LE +FG+YGR+ R + FAFV F P Sbjct: 3 EADRPG---KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESP 59 Query: 237 RDADEARYNLDGRDFDGSRMIVEFA 311 DA +A +++G+ DG + VE A Sbjct: 60 ADAKDAARDMNGKSLDGKAIKVEQA 84
>Q02843:GAG_SIVG1 Gag polyprotein [Contains: Core protein p17; Core protein p24; Core| protein p15] - Simian immunodeficiency virus agm.grivet (isolate AGM gr-1) (SIV-agm.gri) (Simian immunodeficiency virus African green monkey grivet) Length = 513 Score = 53.5 bits (127), Expect = 2e-06 Identities = 22/48 (45%), Positives = 31/48 (64%) Frame = +3 Query: 396 PPGSGRCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDCQNSPKN 539 P G +CFNCG GH R+CKA + +C++CG GH+ +DC+N N Sbjct: 386 PRGPLKCFNCGKFGHMQRECKA-PRQIKCFKCGKIGHMAKDCKNGQAN 432
>P92965:RSP40_ARATH Arginine/serine-rich-splicing factor RSP40 - Arabidopsis thaliana| (Mouse-ear cress) Length = 350 Score = 53.1 bits (126), Expect = 2e-06 Identities = 31/70 (44%), Positives = 40/70 (57%), Gaps = 2/70 (2%) Frame = +3 Query: 111 LYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHEFAFVEFSDPRDADEARYNLDGRDF--D 284 ++ G R DLE LF +YG+V VDMK FAFV D RDA++A LD +F Sbjct: 4 VFCGNFEYDAREGDLERLFRKYGKVERVDMKAGFAFVYMEDERDAEDAIRALDRFEFGRK 63 Query: 285 GSRMIVEFAK 314 G R+ VE+ K Sbjct: 64 GRRLRVEWTK 73 Score = 38.5 bits (88), Expect = 0.059 Identities = 17/39 (43%), Positives = 25/39 (64%) Frame = +3 Query: 138 TRTRDLEDLFGRYGRVRHVDMKHEFAFVEFSDPRDADEA 254 TRTRDLE F YG++ +V ++ FAF+++ DA A Sbjct: 109 TRTRDLEKHFEPYGKIVNVRIRRNFAFIQYEAQEDATRA 147
>P62634:CNBP_RAT Cellular nucleic acid-binding protein - Rattus norvegicus (Rat)| Length = 177 Score = 53.1 bits (126), Expect = 2e-06 Identities = 20/36 (55%), Positives = 26/36 (72%) Frame = +3 Query: 414 CFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDC 521 C+NCG GH ARDC D + +CY CG+ GHI++DC Sbjct: 98 CYNCGKPGHLARDCDHAD-EQKCYSCGEFGHIQKDC 132 Score = 51.6 bits (122), Expect = 7e-06 Identities = 23/65 (35%), Positives = 28/65 (43%), Gaps = 26/65 (40%) Frame = +3 Query: 405 SGRCFNCGIDGHWARDCKAGDWKNR--------------------------CYRCGDSGH 506 S CF CG GHWAR+C G + R CYRCG+SGH Sbjct: 3 SNECFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGESGH 62 Query: 507 IERDC 521 + +DC Sbjct: 63 LAKDC 67 Score = 48.1 bits (113), Expect = 7e-05 Identities = 19/41 (46%), Positives = 26/41 (63%), Gaps = 2/41 (4%) Frame = +3 Query: 414 CFNCGIDGHWARDCK--AGDWKNRCYRCGDSGHIERDCQNS 530 C+NCG GH A+DCK + + CY CG GH+ RDC ++ Sbjct: 74 CYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHA 114 Score = 45.4 bits (106), Expect = 5e-04 Identities = 17/37 (45%), Positives = 23/37 (62%) Frame = +3 Query: 414 CFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDCQ 524 C+ CG GH A+DC + + CY CG GHI +DC+ Sbjct: 54 CYRCGESGHLAKDCDLQE--DACYNCGRGGHIAKDCK 88 Score = 45.4 bits (106), Expect = 5e-04 Identities = 18/37 (48%), Positives = 24/37 (64%) Frame = +3 Query: 411 RCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDC 521 +C+ CG GH A +C N CYRCG+SGH+ R+C Sbjct: 136 KCYRCGETGHVAINCSKTSEVN-CYRCGESGHLAREC 171 Score = 43.9 bits (102), Expect = 0.001 Identities = 16/40 (40%), Positives = 26/40 (65%) Frame = +3 Query: 411 RCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDCQNS 530 +C++CG GH +DC K +CYRCG++GH+ +C + Sbjct: 118 KCYSCGEFGHIQKDCT----KVKCYRCGETGHVAINCSKT 153
>Q5R5R5:CNBP_PONPY Cellular nucleic acid-binding protein - Pongo pygmaeus (Orangutan)| Length = 177 Score = 53.1 bits (126), Expect = 2e-06 Identities = 20/36 (55%), Positives = 26/36 (72%) Frame = +3 Query: 414 CFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDC 521 C+NCG GH ARDC D + +CY CG+ GHI++DC Sbjct: 98 CYNCGKPGHLARDCDHAD-EQKCYSCGEFGHIQKDC 132 Score = 51.6 bits (122), Expect = 7e-06 Identities = 23/65 (35%), Positives = 28/65 (43%), Gaps = 26/65 (40%) Frame = +3 Query: 405 SGRCFNCGIDGHWARDCKAGDWKNR--------------------------CYRCGDSGH 506 S CF CG GHWAR+C G + R CYRCG+SGH Sbjct: 3 SNECFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGESGH 62 Query: 507 IERDC 521 + +DC Sbjct: 63 LAKDC 67 Score = 48.1 bits (113), Expect = 7e-05 Identities = 19/41 (46%), Positives = 26/41 (63%), Gaps = 2/41 (4%) Frame = +3 Query: 414 CFNCGIDGHWARDCK--AGDWKNRCYRCGDSGHIERDCQNS 530 C+NCG GH A+DCK + + CY CG GH+ RDC ++ Sbjct: 74 CYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHA 114 Score = 45.4 bits (106), Expect = 5e-04 Identities = 17/37 (45%), Positives = 23/37 (62%) Frame = +3 Query: 414 CFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDCQ 524 C+ CG GH A+DC + + CY CG GHI +DC+ Sbjct: 54 CYRCGESGHLAKDCDLQE--DACYNCGRGGHIAKDCK 88 Score = 45.4 bits (106), Expect = 5e-04 Identities = 18/37 (48%), Positives = 24/37 (64%) Frame = +3 Query: 411 RCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDC 521 +C+ CG GH A +C N CYRCG+SGH+ R+C Sbjct: 136 KCYRCGETGHVAINCSKTSEVN-CYRCGESGHLAREC 171 Score = 43.9 bits (102), Expect = 0.001 Identities = 16/40 (40%), Positives = 26/40 (65%) Frame = +3 Query: 411 RCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDCQNS 530 +C++CG GH +DC K +CYRCG++GH+ +C + Sbjct: 118 KCYSCGEFGHIQKDCT----KVKCYRCGETGHVAINCSKT 153
>P53996:CNBP_MOUSE Cellular nucleic acid-binding protein - Mus musculus (Mouse)| Length = 178 Score = 53.1 bits (126), Expect = 2e-06 Identities = 20/36 (55%), Positives = 26/36 (72%) Frame = +3 Query: 414 CFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDC 521 C+NCG GH ARDC D + +CY CG+ GHI++DC Sbjct: 99 CYNCGKPGHLARDCDHAD-EQKCYSCGEFGHIQKDC 133 Score = 51.6 bits (122), Expect = 7e-06 Identities = 23/65 (35%), Positives = 28/65 (43%), Gaps = 26/65 (40%) Frame = +3 Query: 405 SGRCFNCGIDGHWARDCKAGDWKNR--------------------------CYRCGDSGH 506 S CF CG GHWAR+C G + R CYRCG+SGH Sbjct: 3 SNECFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGESGH 62 Query: 507 IERDC 521 + +DC Sbjct: 63 LAKDC 67 Score = 48.1 bits (113), Expect = 7e-05 Identities = 19/41 (46%), Positives = 26/41 (63%), Gaps = 2/41 (4%) Frame = +3 Query: 414 CFNCGIDGHWARDCK--AGDWKNRCYRCGDSGHIERDCQNS 530 C+NCG GH A+DCK + + CY CG GH+ RDC ++ Sbjct: 75 CYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHA 115 Score = 45.4 bits (106), Expect = 5e-04 Identities = 18/37 (48%), Positives = 24/37 (64%) Frame = +3 Query: 411 RCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDC 521 +C+ CG GH A +C N CYRCG+SGH+ R+C Sbjct: 137 KCYRCGETGHVAINCSKTSEVN-CYRCGESGHLAREC 172 Score = 43.9 bits (102), Expect = 0.001 Identities = 16/40 (40%), Positives = 26/40 (65%) Frame = +3 Query: 411 RCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDCQNS 530 +C++CG GH +DC K +CYRCG++GH+ +C + Sbjct: 119 KCYSCGEFGHIQKDCT----KVKCYRCGETGHVAINCSKT 154
>P62633:CNBP_HUMAN Cellular nucleic acid-binding protein - Homo sapiens (Human)| Length = 177 Score = 53.1 bits (126), Expect = 2e-06 Identities = 20/36 (55%), Positives = 26/36 (72%) Frame = +3 Query: 414 CFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDC 521 C+NCG GH ARDC D + +CY CG+ GHI++DC Sbjct: 98 CYNCGKPGHLARDCDHAD-EQKCYSCGEFGHIQKDC 132 Score = 51.6 bits (122), Expect = 7e-06 Identities = 23/65 (35%), Positives = 28/65 (43%), Gaps = 26/65 (40%) Frame = +3 Query: 405 SGRCFNCGIDGHWARDCKAGDWKNR--------------------------CYRCGDSGH 506 S CF CG GHWAR+C G + R CYRCG+SGH Sbjct: 3 SNECFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGESGH 62 Query: 507 IERDC 521 + +DC Sbjct: 63 LAKDC 67 Score = 48.1 bits (113), Expect = 7e-05 Identities = 19/41 (46%), Positives = 26/41 (63%), Gaps = 2/41 (4%) Frame = +3 Query: 414 CFNCGIDGHWARDCK--AGDWKNRCYRCGDSGHIERDCQNS 530 C+NCG GH A+DCK + + CY CG GH+ RDC ++ Sbjct: 74 CYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHA 114 Score = 45.4 bits (106), Expect = 5e-04 Identities = 17/37 (45%), Positives = 23/37 (62%) Frame = +3 Query: 414 CFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDCQ 524 C+ CG GH A+DC + + CY CG GHI +DC+ Sbjct: 54 CYRCGESGHLAKDCDLQE--DACYNCGRGGHIAKDCK 88 Score = 45.4 bits (106), Expect = 5e-04 Identities = 18/37 (48%), Positives = 24/37 (64%) Frame = +3 Query: 411 RCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDC 521 +C+ CG GH A +C N CYRCG+SGH+ R+C Sbjct: 136 KCYRCGETGHVAINCSKTSEVN-CYRCGESGHLAREC 171 Score = 43.9 bits (102), Expect = 0.001 Identities = 16/40 (40%), Positives = 26/40 (65%) Frame = +3 Query: 411 RCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDCQNS 530 +C++CG GH +DC K +CYRCG++GH+ +C + Sbjct: 118 KCYSCGEFGHIQKDCT----KVKCYRCGETGHVAINCSKT 153
>O42395:CNBP_CHICK Cellular nucleic acid-binding protein - Gallus gallus (Chicken)| Length = 172 Score = 53.1 bits (126), Expect = 2e-06 Identities = 20/36 (55%), Positives = 26/36 (72%) Frame = +3 Query: 414 CFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDC 521 C+NCG GH ARDC D + +CY CG+ GHI++DC Sbjct: 93 CYNCGKPGHLARDCDHAD-EQKCYSCGEFGHIQKDC 127 Score = 52.8 bits (125), Expect = 3e-06 Identities = 23/59 (38%), Positives = 28/59 (47%), Gaps = 20/59 (33%) Frame = +3 Query: 405 SGRCFNCGIDGHWARDCKAGDWKNR--------------------CYRCGDSGHIERDC 521 S CF CG GHWAR+C G + R CYRCG+SGH+ +DC Sbjct: 3 SNECFKCGRTGHWARECPTGIGRGRGMRSRGRAGFQFMSSSLPDICYRCGESGHLAKDC 61 Score = 48.1 bits (113), Expect = 7e-05 Identities = 19/41 (46%), Positives = 26/41 (63%), Gaps = 2/41 (4%) Frame = +3 Query: 414 CFNCGIDGHWARDCK--AGDWKNRCYRCGDSGHIERDCQNS 530 C+NCG GH A+DCK + + CY CG GH+ RDC ++ Sbjct: 69 CYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHA 109 Score = 45.4 bits (106), Expect = 5e-04 Identities = 18/37 (48%), Positives = 24/37 (64%) Frame = +3 Query: 411 RCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDC 521 +C+ CG GH A +C N CYRCG+SGH+ R+C Sbjct: 131 KCYRCGETGHVAINCSKTSEVN-CYRCGESGHLAREC 166 Score = 43.9 bits (102), Expect = 0.001 Identities = 16/40 (40%), Positives = 26/40 (65%) Frame = +3 Query: 411 RCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDCQNS 530 +C++CG GH +DC K +CYRCG++GH+ +C + Sbjct: 113 KCYSCGEFGHIQKDCT----KVKCYRCGETGHVAINCSKT 148
>P92966:RSP41_ARATH Arginine/serine-rich-splicing factor RSP41 - Arabidopsis thaliana| (Mouse-ear cress) Length = 356 Score = 52.4 bits (124), Expect = 4e-06 Identities = 30/70 (42%), Positives = 40/70 (57%), Gaps = 2/70 (2%) Frame = +3 Query: 111 LYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHEFAFVEFSDPRDADEARYNLDGRDF--D 284 ++ G R DLE LF +YG+V VDMK FAFV D RDA++A LD ++ Sbjct: 4 VFCGNFEYDARESDLERLFRKYGKVERVDMKAGFAFVYMEDERDAEDAIRALDRFEYGRT 63 Query: 285 GSRMIVEFAK 314 G R+ VE+ K Sbjct: 64 GRRLRVEWTK 73 Score = 40.8 bits (94), Expect = 0.012 Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 11/66 (16%) Frame = +3 Query: 90 RYGGNTRLYVGRLPSRT-----------RTRDLEDLFGRYGRVRHVDMKHEFAFVEFSDP 236 R GG+ R G PS+T RTRDLE F YG++ +V ++ FAF+++ Sbjct: 81 RSGGSRRSSSGLRPSKTLFVINFDAQNTRTRDLERHFEPYGKIVNVRIRRNFAFIQYEAQ 140 Query: 237 RDADEA 254 DA A Sbjct: 141 EDATRA 146
>Q77373:POL_HV1AN Gag-Pol polyprotein - Human immunodeficiency virus type 1 (isolate| ANT70 group O) (HIV-1) Length = 1435 Score = 52.4 bits (124), Expect = 4e-06 Identities = 21/42 (50%), Positives = 30/42 (71%) Frame = +3 Query: 402 GSGRCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDCQN 527 G+ +CFNCG +GH AR+C+A K C++CG GH +DC+N Sbjct: 392 GTIKCFNCGKEGHIARNCRA-PRKKGCWKCGQEGHQMKDCRN 432
>P84586:HNRPG_RAT Heterogeneous nuclear ribonucleoprotein G - Rattus norvegicus (Rat)| Length = 388 Score = 52.4 bits (124), Expect = 4e-06 Identities = 30/85 (35%), Positives = 45/85 (52%), Gaps = 8/85 (9%) Frame = +3 Query: 81 ERDRYGGNTRLYVGRLPSRTRTRDLEDLFGRYGRV--------RHVDMKHEFAFVEFSDP 236 E DR G +L++G L + T + LE +FG+YGR+ R + FAFV F P Sbjct: 3 EADRPG---KLFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESP 59 Query: 237 RDADEARYNLDGRDFDGSRMIVEFA 311 DA + +++G+ DG + VE A Sbjct: 60 ADAKDVARDMNGKSLDGKAIKVEQA 84
>Q04832:HEXP_LEIMA DNA-binding protein HEXBP - Leishmania major| Length = 271 Score = 52.4 bits (124), Expect = 4e-06 Identities = 21/50 (42%), Positives = 30/50 (60%), Gaps = 5/50 (10%) Frame = +3 Query: 405 SGRCFNCGIDGHWARDCKAGDWKN-----RCYRCGDSGHIERDCQNSPKN 539 S C NCG +GH+AR+C D K C+RCG+ GH+ R+C N ++ Sbjct: 15 STSCRNCGKEGHYARECPEADSKGDERSTTCFRCGEEGHMSRECPNEARS 64 Score = 52.0 bits (123), Expect = 5e-06 Identities = 22/48 (45%), Positives = 27/48 (56%), Gaps = 6/48 (12%) Frame = +3 Query: 402 GSGRCFNCGIDGHWARDCK------AGDWKNRCYRCGDSGHIERDCQN 527 G C+ CG GH +RDC +G CY+CGD+GHI RDC N Sbjct: 138 GDRTCYKCGDAGHISRDCPNGQGGYSGAGDRTCYKCGDAGHISRDCPN 185 Score = 50.4 bits (119), Expect = 2e-05 Identities = 21/49 (42%), Positives = 28/49 (57%), Gaps = 5/49 (10%) Frame = +3 Query: 405 SGRCFNCGIDGHWARDC-----KAGDWKNRCYRCGDSGHIERDCQNSPK 536 S CF CG +GH +R+C C+RCG++GH+ RDC NS K Sbjct: 42 STTCFRCGEEGHMSRECPNEARSGAAGAMTCFRCGEAGHMSRDCPNSAK 90 Score = 50.1 bits (118), Expect = 2e-05 Identities = 23/48 (47%), Positives = 28/48 (58%), Gaps = 5/48 (10%) Frame = +3 Query: 402 GSGRCFNCGIDGHWARDC----KAGDWKN-RCYRCGDSGHIERDCQNS 530 G+ CF CG GH +RDC K G K CY+CG GH+ RDC +S Sbjct: 68 GAMTCFRCGEAGHMSRDCPNSAKPGAAKGFECYKCGQEGHLSRDCPSS 115 Score = 48.5 bits (114), Expect = 6e-05 Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 24/67 (35%) Frame = +3 Query: 399 PGSGR---CFNCGIDGHWARDCKAGDWKNR---------------------CYRCGDSGH 506 PG+ + C+ CG +GH +RDC + +R CY+CGD+GH Sbjct: 91 PGAAKGFECYKCGQEGHLSRDCPSSQGGSRGGYGQKRGRSGAQGGYSGDRTCYKCGDAGH 150 Query: 507 IERDCQN 527 I RDC N Sbjct: 151 ISRDCPN 157 Score = 48.5 bits (114), Expect = 6e-05 Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 6/49 (12%) Frame = +3 Query: 402 GSGRCFNCGIDGHWARDCK------AGDWKNRCYRCGDSGHIERDCQNS 530 G C+ CG GH +RDC +G +CY+CG+SGH+ R+C ++ Sbjct: 166 GDRTCYKCGDAGHISRDCPNGQGGYSGAGDRKCYKCGESGHMSRECPSA 214 Score = 47.8 bits (112), Expect = 1e-04 Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 4/44 (9%) Frame = +3 Query: 402 GSGRCFNCGIDGHWARDCKA----GDWKNRCYRCGDSGHIERDC 521 G +C+ CG GH +R+C + G CY+CG GHI R+C Sbjct: 194 GDRKCYKCGESGHMSRECPSAGSTGSGDRACYKCGKPGHISREC 237 Score = 47.8 bits (112), Expect = 1e-04 Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 9/52 (17%) Frame = +3 Query: 402 GSGRCFNCGIDGHWARDC---------KAGDWKNRCYRCGDSGHIERDCQNS 530 G C+ CG GH +R+C G CY+CG++GHI RDC +S Sbjct: 220 GDRACYKCGKPGHISRECPEAGGSYGGSRGGGDRTCYKCGEAGHISRDCPSS 271
>Q77372:GAG_HV1AN Gag polyprotein - Human immunodeficiency virus type 1 (isolate| ANT70 group O) (HIV-1) Length = 498 Score = 52.4 bits (124), Expect = 4e-06 Identities = 21/42 (50%), Positives = 30/42 (71%) Frame = +3 Query: 402 GSGRCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDCQN 527 G+ +CFNCG +GH AR+C+A K C++CG GH +DC+N Sbjct: 392 GTIKCFNCGKEGHIARNCRA-PRKKGCWKCGQEGHQMKDCRN 432
>O91080:POL_HV1YF Gag-Pol polyprotein - Human immunodeficiency virus type 1 (isolate| YBF30 group N) (HIV-1) Length = 1449 Score = 51.6 bits (122), Expect = 7e-06 Identities = 20/39 (51%), Positives = 28/39 (71%) Frame = +3 Query: 411 RCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDCQN 527 +CFNCG +GH AR+CKA + C++CG GH +DC+N Sbjct: 394 KCFNCGKEGHLARNCKA-PRRGGCWKCGQEGHQMKDCKN 431
>Q9IDV9:POL_HV1YB Gag-Pol polyprotein - Human immunodeficiency virus type 1 (isolate| YBF106 group N) (HIV-1) Length = 1449 Score = 51.6 bits (122), Expect = 7e-06 Identities = 20/39 (51%), Positives = 28/39 (71%) Frame = +3 Query: 411 RCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDCQN 527 +CFNCG +GH AR+CKA + C++CG GH +DC+N Sbjct: 393 KCFNCGKEGHLARNCKA-PRRRGCWKCGQEGHQMKDCKN 430
>O35479:HNRPG_MOUSE Heterogeneous nuclear ribonucleoprotein G - Mus musculus (Mouse)| Length = 388 Score = 51.6 bits (122), Expect = 7e-06 Identities = 30/85 (35%), Positives = 45/85 (52%), Gaps = 8/85 (9%) Frame = +3 Query: 81 ERDRYGGNTRLYVGRLPSRTRTRDLEDLFGRYGRV--------RHVDMKHEFAFVEFSDP 236 E DR G +L++G L + T + LE +FG+YGR+ R + FAFV P Sbjct: 3 EADRPG---KLFIGGLNTETNEKALEAVFGKYGRIVEIILMKDRETNKSRGFAFVTLESP 59 Query: 237 RDADEARYNLDGRDFDGSRMIVEFA 311 DA +A +++G+ DG + VE A Sbjct: 60 ADAKDAARDMNGKSLDGKAIKVEQA 84
>O91079:GAG_HV1YF Gag polyprotein - Human immunodeficiency virus type 1 (isolate| YBF30 group N) (HIV-1) Length = 512 Score = 51.6 bits (122), Expect = 7e-06 Identities = 20/39 (51%), Positives = 28/39 (71%) Frame = +3 Query: 411 RCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDCQN 527 +CFNCG +GH AR+CKA + C++CG GH +DC+N Sbjct: 394 KCFNCGKEGHLARNCKA-PRRGGCWKCGQEGHQMKDCKN 431
>Q9IDV8:GAG_HV1YB Gag polyprotein - Human immunodeficiency virus type 1 (isolate| YBF106 group N) (HIV-1) Length = 511 Score = 51.6 bits (122), Expect = 7e-06 Identities = 20/39 (51%), Positives = 28/39 (71%) Frame = +3 Query: 411 RCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDCQN 527 +CFNCG +GH AR+CKA + C++CG GH +DC+N Sbjct: 393 KCFNCGKEGHLARNCKA-PRRRGCWKCGQEGHQMKDCKN 430
>Q9R0U0:FUSIP_MOUSE FUS-interacting serine-arginine-rich protein 1 - Mus musculus| (Mouse) Length = 262 Score = 51.6 bits (122), Expect = 7e-06 Identities = 29/79 (36%), Positives = 46/79 (58%), Gaps = 8/79 (10%) Frame = +3 Query: 102 NTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHEF--------AFVEFSDPRDADEAR 257 NT L+V + TR+ DL FGRYG + V + +F A+V+F D RDA++A Sbjct: 9 NTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDAL 68 Query: 258 YNLDGRDFDGSRMIVEFAK 314 +NLD + G ++ ++FA+ Sbjct: 69 HNLDRKWICGRQIEIQFAQ 87
>O75494:FUSIP_HUMAN FUS-interacting serine-arginine-rich protein 1 - Homo sapiens| (Human) Length = 262 Score = 51.6 bits (122), Expect = 7e-06 Identities = 29/79 (36%), Positives = 46/79 (58%), Gaps = 8/79 (10%) Frame = +3 Query: 102 NTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHEF--------AFVEFSDPRDADEAR 257 NT L+V + TR+ DL FGRYG + V + +F A+V+F D RDA++A Sbjct: 9 NTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDAL 68 Query: 258 YNLDGRDFDGSRMIVEFAK 314 +NLD + G ++ ++FA+ Sbjct: 69 HNLDRKWICGRQIEIQFAQ 87
>Q6AYK1:RNPS1_RAT RNA-binding protein with serine-rich domain 1 - Rattus norvegicus| (Rat) Length = 305 Score = 51.2 bits (121), Expect = 9e-06 Identities = 27/97 (27%), Positives = 53/97 (54%), Gaps = 14/97 (14%) Frame = +3 Query: 48 SLSQCRMPRYDERDRYGGN-----TRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE- 209 S S+ + P+ DE++R + T++++GRL + ++F YG+++ +DM E Sbjct: 137 SRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVER 196 Query: 210 --------FAFVEFSDPRDADEARYNLDGRDFDGSRM 296 +A+VEF +P +A++A ++DG DG + Sbjct: 197 MHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEI 233
>Q5NVM8:RNPS1_PONPY RNA-binding protein with serine-rich domain 1 - Pongo pygmaeus| (Orangutan) Length = 305 Score = 51.2 bits (121), Expect = 9e-06 Identities = 27/97 (27%), Positives = 53/97 (54%), Gaps = 14/97 (14%) Frame = +3 Query: 48 SLSQCRMPRYDERDRYGGN-----TRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE- 209 S S+ + P+ DE++R + T++++GRL + ++F YG+++ +DM E Sbjct: 137 SRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVER 196 Query: 210 --------FAFVEFSDPRDADEARYNLDGRDFDGSRM 296 +A+VEF +P +A++A ++DG DG + Sbjct: 197 MHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEI 233
>Q99M28:RNPS1_MOUSE RNA-binding protein with serine-rich domain 1 - Mus musculus| (Mouse) Length = 305 Score = 51.2 bits (121), Expect = 9e-06 Identities = 27/97 (27%), Positives = 53/97 (54%), Gaps = 14/97 (14%) Frame = +3 Query: 48 SLSQCRMPRYDERDRYGGN-----TRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE- 209 S S+ + P+ DE++R + T++++GRL + ++F YG+++ +DM E Sbjct: 137 SRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVER 196 Query: 210 --------FAFVEFSDPRDADEARYNLDGRDFDGSRM 296 +A+VEF +P +A++A ++DG DG + Sbjct: 197 MHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEI 233
>Q4R5N1:RNPS1_MACFA RNA-binding protein with serine-rich domain 1 - Macaca fascicularis| (Crab eating macaque) (Cynomolgus monkey) Length = 305 Score = 51.2 bits (121), Expect = 9e-06 Identities = 27/97 (27%), Positives = 53/97 (54%), Gaps = 14/97 (14%) Frame = +3 Query: 48 SLSQCRMPRYDERDRYGGN-----TRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE- 209 S S+ + P+ DE++R + T++++GRL + ++F YG+++ +DM E Sbjct: 137 SRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVER 196 Query: 210 --------FAFVEFSDPRDADEARYNLDGRDFDGSRM 296 +A+VEF +P +A++A ++DG DG + Sbjct: 197 MHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEI 233
>Q15287:RNPS1_HUMAN RNA-binding protein with serine-rich domain 1 - Homo sapiens| (Human) Length = 305 Score = 51.2 bits (121), Expect = 9e-06 Identities = 27/97 (27%), Positives = 53/97 (54%), Gaps = 14/97 (14%) Frame = +3 Query: 48 SLSQCRMPRYDERDRYGGN-----TRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE- 209 S S+ + P+ DE++R + T++++GRL + ++F YG+++ +DM E Sbjct: 137 SRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVER 196 Query: 210 --------FAFVEFSDPRDADEARYNLDGRDFDGSRM 296 +A+VEF +P +A++A ++DG DG + Sbjct: 197 MHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEI 233
>Q1A249:POL_SIVEK Gag-Pol polyprotein - Simian immunodeficiency virus (isolate EK505)| (SIV-cpz) (Chimpanzee immunodeficiency virus) Length = 1448 Score = 51.2 bits (121), Expect = 9e-06 Identities = 20/42 (47%), Positives = 29/42 (69%) Frame = +3 Query: 411 RCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDCQNSPK 536 +CFNCG +GH AR+CKA K C++CG GH +DC++ + Sbjct: 394 KCFNCGKEGHLARNCKA-PRKKGCWKCGQEGHQMKDCRSGER 434
>Q1A250:GAG_SIVEK Gag polyprotein - Simian immunodeficiency virus (isolate EK505)| (SIV-cpz) (Chimpanzee immunodeficiency virus) Length = 511 Score = 51.2 bits (121), Expect = 9e-06 Identities = 20/42 (47%), Positives = 29/42 (69%) Frame = +3 Query: 411 RCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDCQNSPK 536 +CFNCG +GH AR+CKA K C++CG GH +DC++ + Sbjct: 394 KCFNCGKEGHLARNCKA-PRKKGCWKCGQEGHQMKDCRSGER 434
>P17282:GAG_SIVCZ Gag polyprotein [Contains: Core protein p18; Core protein p25; Core| protein p16] - Simian immunodeficiency virus (isolate CPZ GAB1) (SIV-cpz) (Chimpanzee immunodeficiency virus) Length = 508 Score = 51.2 bits (121), Expect = 9e-06 Identities = 22/43 (51%), Positives = 27/43 (62%) Frame = +3 Query: 411 RCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDCQNSPKN 539 +CFNCG +GH AR+CKA K C+RCG GH +DC N Sbjct: 401 KCFNCGKEGHLARNCKAPRRKG-CWRCGQEGHQMKDCTGRQVN 442
>Q8WXF0:SRR35_HUMAN 35 kDa SR repressor protein - Homo sapiens (Human)| Length = 261 Score = 50.4 bits (119), Expect = 2e-05 Identities = 28/79 (35%), Positives = 45/79 (56%), Gaps = 8/79 (10%) Frame = +3 Query: 102 NTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHEF--------AFVEFSDPRDADEAR 257 NT L++ + TR DL FGRYG + V + +F A+V+F D RDA++A Sbjct: 9 NTSLFIRNVADATRPEDLRREFGRYGPIVDVYIPLDFYTRRPRGFAYVQFEDVRDAEDAL 68 Query: 258 YNLDGRDFDGSRMIVEFAK 314 YNL+ + G ++ ++FA+ Sbjct: 69 YNLNRKWVCGRQIEIQFAQ 87
>Q1A267:POL_SIVMB Gag-Pol polyprotein - Simian immunodeficiency virus (isolate MB66)| (SIV-cpz) (Chimpanzee immunodeficiency virus) Length = 1437 Score = 50.4 bits (119), Expect = 2e-05 Identities = 21/39 (53%), Positives = 27/39 (69%) Frame = +3 Query: 411 RCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDCQN 527 +CFNCG +GH AR+CKA K C++CG GH R+C N Sbjct: 386 KCFNCGKEGHIARNCKAPRRKG-CWKCGQEGHQMRNCTN 423
>Q79666:POL_HV1MV Gag-Pol polyprotein - Human immunodeficiency virus type 1 (isolate| MVP5180 group O) (HIV-1) Length = 1446 Score = 50.4 bits (119), Expect = 2e-05 Identities = 20/42 (47%), Positives = 29/42 (69%) Frame = +3 Query: 402 GSGRCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDCQN 527 G +CFNCG +GH A++C+A K C++CG GH +DC+N Sbjct: 392 GPIKCFNCGKEGHIAKNCRA-PRKRGCWKCGQEGHQMKDCKN 432
>Q1A268:GAG_SIVMB Gag polyprotein - Simian immunodeficiency virus (isolate MB66)| (SIV-cpz) (Chimpanzee immunodeficiency virus) Length = 499 Score = 50.4 bits (119), Expect = 2e-05 Identities = 21/39 (53%), Positives = 27/39 (69%) Frame = +3 Query: 411 RCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDCQN 527 +CFNCG +GH AR+CKA K C++CG GH R+C N Sbjct: 386 KCFNCGKEGHIARNCKAPRRKG-CWKCGQEGHQMRNCTN 423
>Q79665:GAG_HV1MV Gag polyprotein - Human immunodeficiency virus type 1 (isolate| MVP5180 group O) (HIV-1) Length = 498 Score = 50.4 bits (119), Expect = 2e-05 Identities = 20/42 (47%), Positives = 29/42 (69%) Frame = +3 Query: 402 GSGRCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDCQN 527 G +CFNCG +GH A++C+A K C++CG GH +DC+N Sbjct: 392 GPIKCFNCGKEGHIAKNCRA-PRKRGCWKCGQEGHQMKDCKN 432
>Q5XG24:RNPS1_XENLA RNA-binding protein with serine-rich domain 1 - Xenopus laevis| (African clawed frog) Length = 283 Score = 50.1 bits (118), Expect = 2e-05 Identities = 26/97 (26%), Positives = 52/97 (53%), Gaps = 14/97 (14%) Frame = +3 Query: 48 SLSQCRMPRYDERDRYGGN-----TRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE- 209 S S+ + P+ DE++R + T++++GRL + ++F YG+++ +DM + Sbjct: 114 SRSKSKQPKRDEKERKRRSPSPRPTKVHIGRLTRNVTKDHILEIFSTYGKIKMIDMPVDR 173 Query: 210 --------FAFVEFSDPRDADEARYNLDGRDFDGSRM 296 +A+VEF P +A++A ++DG DG + Sbjct: 174 YHPHLSKGYAYVEFEAPEEAEKALKHMDGGQIDGQEI 210
>P04587:POL_HV1B5 Gag-Pol polyprotein - Human immunodeficiency virus type 1 (isolate| BH5 group M subtype B) (HIV-1) Length = 1447 Score = 50.1 bits (118), Expect = 2e-05 Identities = 21/43 (48%), Positives = 27/43 (62%) Frame = +3 Query: 411 RCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDCQNSPKN 539 +CFNCG +GH AR+CKA K C++CG GH +DC N Sbjct: 391 KCFNCGKEGHIARNCKA-PRKKGCWKCGKEGHQMKDCTERQAN 432
>P04593:GAG_HV1B5 Gag polyprotein - Human immunodeficiency virus type 1 (isolate BH5| group M subtype B) (HIV-1) Length = 512 Score = 50.1 bits (118), Expect = 2e-05 Identities = 21/43 (48%), Positives = 27/43 (62%) Frame = +3 Query: 411 RCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDCQNSPKN 539 +CFNCG +GH AR+CKA K C++CG GH +DC N Sbjct: 391 KCFNCGKEGHIARNCKA-PRKKGCWKCGKEGHQMKDCTERQAN 432
>P12498:POL_HV1J3 Gag-Pol polyprotein - Human immunodeficiency virus type 1 (isolate| JH32 group M subtype B) (HIV-1) Length = 532 Score = 49.7 bits (117), Expect = 3e-05 Identities = 20/43 (46%), Positives = 27/43 (62%) Frame = +3 Query: 411 RCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDCQNSPKN 539 +CFNCG +GH AR+C+A K C++CG GH +DC N Sbjct: 391 KCFNCGKEGHLARNCRA-PRKKGCWKCGKEGHQMKDCNERQAN 432
>Q75002:POL_HV1ET Gag-Pol polyprotein - Human immunodeficiency virus type 1 (isolate| ETH2220 group M subtype C) (HIV-1) Length = 1439 Score = 49.7 bits (117), Expect = 3e-05 Identities = 21/48 (43%), Positives = 29/48 (60%) Frame = +3 Query: 396 PPGSGRCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDCQNSPKN 539 P + +CFNCG +GH AR+C+A K C++CG GH +DC N Sbjct: 383 PKRAIKCFNCGKEGHLARNCRA-PRKKGCWKCGKEGHQMKDCTERQAN 429
>P05960:POL_HV1C4 Gag-Pol polyprotein - Human immunodeficiency virus type 1 (isolate| CDC-451 group M subtype B) (HIV-1) Length = 550 Score = 49.7 bits (117), Expect = 3e-05 Identities = 21/43 (48%), Positives = 27/43 (62%) Frame = +3 Query: 411 RCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDCQNSPKN 539 +CFNCG +GH AR+CKA K C++CG GH +DC N Sbjct: 391 KCFNCGKEGHIARNCKA-PRKKGCWKCGREGHQMKDCTERQAN 432
>P12494:GAG_HV1J3 Gag polyprotein - Human immunodeficiency virus type 1 (isolate JH32| group M subtype B) (HIV-1) Length = 500 Score = 49.7 bits (117), Expect = 3e-05 Identities = 20/43 (46%), Positives = 27/43 (62%) Frame = +3 Query: 411 RCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDCQNSPKN 539 +CFNCG +GH AR+C+A K C++CG GH +DC N Sbjct: 391 KCFNCGKEGHLARNCRA-PRKKGCWKCGKEGHQMKDCNERQAN 432
>Q75001:GAG_HV1ET Gag polyprotein - Human immunodeficiency virus type 1 (isolate| ETH2220 group M subtype C) (HIV-1) Length = 504 Score = 49.7 bits (117), Expect = 3e-05 Identities = 21/48 (43%), Positives = 29/48 (60%) Frame = +3 Query: 396 PPGSGRCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDCQNSPKN 539 P + +CFNCG +GH AR+C+A K C++CG GH +DC N Sbjct: 383 PKRAIKCFNCGKEGHLARNCRA-PRKKGCWKCGKEGHQMKDCTERQAN 429
>P05887:GAG_HV1C4 Gag polyprotein - Human immunodeficiency virus type 1 (isolate| CDC-451 group M subtype B) (HIV-1) Length = 500 Score = 49.7 bits (117), Expect = 3e-05 Identities = 21/43 (48%), Positives = 27/43 (62%) Frame = +3 Query: 411 RCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDCQNSPKN 539 +CFNCG +GH AR+CKA K C++CG GH +DC N Sbjct: 391 KCFNCGKEGHIARNCKA-PRKKGCWKCGREGHQMKDCTERQAN 432
>Q9QC00:GAG_HV197 Gag polyprotein - Human immunodeficiency virus type 1 (isolate| 97ZR-EQTB11 group M subtype K) (HIV-1) Length = 495 Score = 49.7 bits (117), Expect = 3e-05 Identities = 20/43 (46%), Positives = 27/43 (62%) Frame = +3 Query: 411 RCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDCQNSPKN 539 +CFNCG +GH AR+C+A K C++CG GH +DC N Sbjct: 386 KCFNCGKEGHLARNCRA-PRKKGCWKCGKEGHQMKDCSERQAN 427
>O12157:GAG_HV192 Gag polyprotein - Human immunodeficiency virus type 1 (isolate| 92BR025 group M subtype C) (HIV-1) Length = 496 Score = 49.7 bits (117), Expect = 3e-05 Identities = 21/48 (43%), Positives = 29/48 (60%) Frame = +3 Query: 396 PPGSGRCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDCQNSPKN 539 P + +CFNCG +GH AR+C+A K C++CG GH +DC N Sbjct: 383 PKRTIKCFNCGKEGHLARNCRA-PRKKGCWKCGKEGHQVKDCTERQAN 429
>P36627:BYR3_SCHPO Cellular nucleic acid-binding protein homolog - Schizosaccharomyces| pombe (Fission yeast) Length = 179 Score = 49.7 bits (117), Expect = 3e-05 Identities = 18/40 (45%), Positives = 24/40 (60%) Frame = +3 Query: 414 CFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDCQNSP 533 C+NC GH A +C + CY CG +GH+ RDC +SP Sbjct: 38 CYNCNQTGHKASECTEPQQEKTCYACGTAGHLVRDCPSSP 77 Score = 44.7 bits (104), Expect = 8e-04 Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 3/48 (6%) Frame = +3 Query: 396 PPGSGRCFNCGIDGHWARDCKAGDWKNR---CYRCGDSGHIERDCQNS 530 P C+ CG GH RDC + + CY+CG GHI RDC+ + Sbjct: 54 PQQEKTCYACGTAGHLVRDCPSSPNPRQGAECYKCGRVGHIARDCRTN 101 Score = 42.0 bits (97), Expect = 0.005 Identities = 18/39 (46%), Positives = 22/39 (56%) Frame = +3 Query: 414 CFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDCQNS 530 C+ CG GH ARDC G +CY CG GH +CQ + Sbjct: 118 CYACGSYGHQARDCTMG---VKCYSCGKIGHRSFECQQA 153 Score = 37.7 bits (86), Expect = 0.10 Identities = 13/37 (35%), Positives = 21/37 (56%) Frame = +3 Query: 411 RCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDC 521 +C++CG GH + +C+ CY+C GHI +C Sbjct: 136 KCYSCGKIGHRSFECQQASDGQLCYKCNQPGHIAVNC 172
>Q24491:RX21_DROME RNA-binding protein Rsf1 - Drosophila melanogaster (Fruit fly)| Length = 197 Score = 49.3 bits (116), Expect = 3e-05 Identities = 29/73 (39%), Positives = 43/73 (58%), Gaps = 3/73 (4%) Frame = +3 Query: 105 TRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE---FAFVEFSDPRDADEARYNLDGR 275 TR+YVG L + + DLE F +YG++ V + FAFVEF DA++A L+G Sbjct: 7 TRVYVGNLTDKVKKDDLEGEFTKYGKLNSVWIAFNPPGFAFVEFEHRDDAEKACDILNGS 66 Query: 276 DFDGSRMIVEFAK 314 + GS++ VE +K Sbjct: 67 ELLGSQLRVEISK 79
>O89940:POL_HV1SE Gag-Pol polyprotein - Human immunodeficiency virus type 1 (isolate| SE6165 group M subtype G) (HIV-1) Length = 1433 Score = 49.3 bits (116), Expect = 3e-05 Identities = 20/43 (46%), Positives = 27/43 (62%) Frame = +3 Query: 411 RCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDCQNSPKN 539 +CFNCG +GH AR+C+A K C++CG GH +DC N Sbjct: 392 KCFNCGKEGHLARNCRA-PRKKGCWKCGKEGHQMKDCTERQAN 433
>P04588:POL_HV1MA Gag-Pol polyprotein - Human immunodeficiency virus type 1 (isolate| MAL group M subtype A) (HIV-1) Length = 1440 Score = 49.3 bits (116), Expect = 3e-05 Identities = 20/43 (46%), Positives = 27/43 (62%) Frame = +3 Query: 411 RCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDCQNSPKN 539 +CFNCG +GH AR+C+A K C++CG GH +DC N Sbjct: 397 KCFNCGKEGHLARNCRA-PRKKGCWKCGKEGHQMKDCTERQAN 438
>Q9QBZ1:POL_HV1M2 Gag-Pol polyprotein - Human immunodeficiency virus type 1 (isolate| MP257 group M subtype F2) (HIV-1) Length = 1434 Score = 49.3 bits (116), Expect = 3e-05 Identities = 20/43 (46%), Positives = 27/43 (62%) Frame = +3 Query: 411 RCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDCQNSPKN 539 +CFNCG +GH AR+C+A K C++CG GH +DC N Sbjct: 390 KCFNCGKEGHIARNCRA-PRKRGCWKCGQEGHQMKDCTERQAN 431
>P04585:POL_HV1H2 Gag-Pol polyprotein - Human immunodeficiency virus type 1 (isolate| HXB2 group M subtype B) (HIV-1) Length = 1435 Score = 49.3 bits (116), Expect = 3e-05 Identities = 20/43 (46%), Positives = 27/43 (62%) Frame = +3 Query: 411 RCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDCQNSPKN 539 +CFNCG +GH AR+C+A K C++CG GH +DC N Sbjct: 391 KCFNCGKEGHTARNCRA-PRKKGCWKCGKEGHQMKDCTERQAN 432
>P03366:POL_HV1B1 Gag-Pol polyprotein - Human immunodeficiency virus type 1 (isolate| BH10 group M subtype B) (HIV-1) Length = 1447 Score = 49.3 bits (116), Expect = 3e-05 Identities = 20/43 (46%), Positives = 27/43 (62%) Frame = +3 Query: 411 RCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDCQNSPKN 539 +CFNCG +GH AR+C+A K C++CG GH +DC N Sbjct: 391 KCFNCGKEGHTARNCRA-PRKKGCWKCGKEGHQMKDCTERQAN 432
>O89939:GAG_HV1SE Gag polyprotein - Human immunodeficiency virus type 1 (isolate| SE6165 group M subtype G) (HIV-1) Length = 495 Score = 49.3 bits (116), Expect = 3e-05 Identities = 20/43 (46%), Positives = 27/43 (62%) Frame = +3 Query: 411 RCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDCQNSPKN 539 +CFNCG +GH AR+C+A K C++CG GH +DC N Sbjct: 392 KCFNCGKEGHLARNCRA-PRKKGCWKCGKEGHQMKDCTERQAN 433
>P04594:GAG_HV1MA Gag polyprotein - Human immunodeficiency virus type 1 (isolate MAL| group M subtype A) (HIV-1) Length = 505 Score = 49.3 bits (116), Expect = 3e-05 Identities = 20/43 (46%), Positives = 27/43 (62%) Frame = +3 Query: 411 RCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDCQNSPKN 539 +CFNCG +GH AR+C+A K C++CG GH +DC N Sbjct: 397 KCFNCGKEGHLARNCRA-PRKKGCWKCGKEGHQMKDCTERQAN 438
>Q9QBZ2:GAG_HV1M2 Gag polyprotein - Human immunodeficiency virus type 1 (isolate| MP257 group M subtype F2) (HIV-1) Length = 496 Score = 49.3 bits (116), Expect = 3e-05 Identities = 20/43 (46%), Positives = 27/43 (62%) Frame = +3 Query: 411 RCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDCQNSPKN 539 +CFNCG +GH AR+C+A K C++CG GH +DC N Sbjct: 390 KCFNCGKEGHIARNCRA-PRKRGCWKCGQEGHQMKDCTERQAN 431
>P04591:GAG_HV1H2 Gag polyprotein - Human immunodeficiency virus type 1 (isolate HXB2| group M subtype B) (HIV-1) Length = 500 Score = 49.3 bits (116), Expect = 3e-05 Identities = 20/43 (46%), Positives = 27/43 (62%) Frame = +3 Query: 411 RCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDCQNSPKN 539 +CFNCG +GH AR+C+A K C++CG GH +DC N Sbjct: 391 KCFNCGKEGHTARNCRA-PRKKGCWKCGKEGHQMKDCTERQAN 432
>P03347:GAG_HV1B1 Gag polyprotein - Human immunodeficiency virus type 1 (isolate BH10| group M subtype B) (HIV-1) Length = 512 Score = 49.3 bits (116), Expect = 3e-05 Identities = 20/43 (46%), Positives = 27/43 (62%) Frame = +3 Query: 411 RCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDCQNSPKN 539 +CFNCG +GH AR+C+A K C++CG GH +DC N Sbjct: 391 KCFNCGKEGHTARNCRA-PRKKGCWKCGKEGHQMKDCTERQAN 432
>P18802:POL_HV1ND Gag-Pol polyprotein - Human immunodeficiency virus type 1 (isolate| NDK group M subtype D) (HIV-1) Length = 1432 Score = 48.9 bits (115), Expect = 4e-05 Identities = 21/48 (43%), Positives = 29/48 (60%) Frame = +3 Query: 396 PPGSGRCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDCQNSPKN 539 P S +CFNCG +GH A++C+A K C++CG GH +DC N Sbjct: 384 PRKSIKCFNCGKEGHTAKNCRA-PRKKGCWKCGREGHQMKDCTERQAN 430
>Q9QBZ5:POL_HV1MP Gag-Pol polyprotein - Human immunodeficiency virus type 1 (isolate| MP255 group M subtype F2) (HIV-1) Length = 1430 Score = 48.9 bits (115), Expect = 4e-05 Identities = 20/43 (46%), Positives = 27/43 (62%) Frame = +3 Query: 411 RCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDCQNSPKN 539 +CFNCG +GH AR+C+A K C++CG GH +DC N Sbjct: 386 KCFNCGKEGHIARNCRA-PRKKGCWKCGKEGHQMKDCTERQAN 427
>P03367:POL_HV1BR Gag-Pol polyprotein - Human immunodeficiency virus type 1 (isolate| BRU/LAI group M subtype B) (HIV-1) Length = 1447 Score = 48.9 bits (115), Expect = 4e-05 Identities = 20/43 (46%), Positives = 27/43 (62%) Frame = +3 Query: 411 RCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDCQNSPKN 539 +CFNCG +GH AR+C+A K C++CG GH +DC N Sbjct: 391 KCFNCGKEGHIARNCRA-PRKKGCWKCGKEGHQMKDCTERQAN 432
>Q9QBY3:POL_HV196 Gag-Pol polyprotein - Human immunodeficiency virus type 1 (isolate| 96CM-MP535 group M subtype K) (HIV-1) Length = 1430 Score = 48.9 bits (115), Expect = 4e-05 Identities = 20/43 (46%), Positives = 27/43 (62%) Frame = +3 Query: 411 RCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDCQNSPKN 539 +CFNCG +GH AR+C+A K C++CG GH +DC N Sbjct: 386 KCFNCGKEGHIARNCRA-PRKKGCWKCGKEGHQMKDCTERQAN 427
>Q01560:NOP3_YEAST Nucleolar protein 3 - Saccharomyces cerevisiae (Baker's yeast)| Length = 414 Score = 48.9 bits (115), Expect = 4e-05 Identities = 25/84 (29%), Positives = 45/84 (53%) Frame = +3 Query: 63 RMPRYDERDRYGGNTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHEFAFVEFSDPRD 242 R P + ++ NTRL+V P + +L ++FG +G ++ V + + FAFVEF + Sbjct: 111 RPPMHHRQEGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKILNGFAFVEFEEAES 170 Query: 243 ADEARYNLDGRDFDGSRMIVEFAK 314 A +A + G+ F + V ++K Sbjct: 171 AAKAIEEVHGKSFANQPLEVVYSK 194
>P18800:GAG_HV1ND Gag polyprotein - Human immunodeficiency virus type 1 (isolate NDK| group M subtype D) (HIV-1) Length = 497 Score = 48.9 bits (115), Expect = 4e-05 Identities = 21/48 (43%), Positives = 29/48 (60%) Frame = +3 Query: 396 PPGSGRCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDCQNSPKN 539 P S +CFNCG +GH A++C+A K C++CG GH +DC N Sbjct: 384 PRKSIKCFNCGKEGHTAKNCRA-PRKKGCWKCGREGHQMKDCTERQAN 430
>Q9QBZ6:GAG_HV1MP Gag polyprotein - Human immunodeficiency virus type 1 (isolate| MP255 group M subtype F2) (HIV-1) Length = 492 Score = 48.9 bits (115), Expect = 4e-05 Identities = 20/43 (46%), Positives = 27/43 (62%) Frame = +3 Query: 411 RCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDCQNSPKN 539 +CFNCG +GH AR+C+A K C++CG GH +DC N Sbjct: 386 KCFNCGKEGHIARNCRA-PRKKGCWKCGKEGHQMKDCTERQAN 427
>Q70622:GAG_HV1LW Gag polyprotein - Human immunodeficiency virus type 1 (isolate| LW123 group M subtype B) (HIV-1) Length = 500 Score = 48.9 bits (115), Expect = 4e-05 Identities = 20/43 (46%), Positives = 27/43 (62%) Frame = +3 Query: 411 RCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDCQNSPKN 539 +CFNCG +GH AR+C+A K C++CG GH +DC N Sbjct: 391 KCFNCGKEGHIARNCRA-PRKKGCWKCGKEGHQMKDCTERQAN 432
>P03348:GAG_HV1BR Gag polyprotein - Human immunodeficiency virus type 1 (isolate| BRU/LAI group M subtype B) (HIV-1) Length = 512 Score = 48.9 bits (115), Expect = 4e-05 Identities = 20/43 (46%), Positives = 27/43 (62%) Frame = +3 Query: 411 RCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDCQNSPKN 539 +CFNCG +GH AR+C+A K C++CG GH +DC N Sbjct: 391 KCFNCGKEGHIARNCRA-PRKKGCWKCGKEGHQMKDCTERQAN 432
>Q9QBY4:GAG_HV196 Gag polyprotein - Human immunodeficiency virus type 1 (isolate| 96CM-MP535 group M subtype K) (HIV-1) Length = 495 Score = 48.9 bits (115), Expect = 4e-05 Identities = 20/43 (46%), Positives = 27/43 (62%) Frame = +3 Query: 411 RCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDCQNSPKN 539 +CFNCG +GH AR+C+A K C++CG GH +DC N Sbjct: 386 KCFNCGKEGHIARNCRA-PRKKGCWKCGKEGHQMKDCTERQAN 427
>Q8AII1:POL_SIVTN Gag-Pol polyprotein - Simian immunodeficiency virus (isolate TAN1)| (SIV-cpz) (Chimpanzee immunodeficiency virus) Length = 1459 Score = 48.5 bits (114), Expect = 6e-05 Identities = 21/40 (52%), Positives = 26/40 (65%) Frame = +3 Query: 402 GSGRCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDC 521 G +CFNCG GH AR+C+A K C+RCG GH +DC Sbjct: 415 GQLQCFNCGKVGHTARNCRA-PRKKGCWRCGQEGHQMKDC 453
>Q9QSR3:POL_HV1VI Gag-Pol polyprotein - Human immunodeficiency virus type 1 (isolate| VI850 group M subtype F1) (HIV-1) Length = 1430 Score = 48.5 bits (114), Expect = 6e-05 Identities = 20/43 (46%), Positives = 27/43 (62%) Frame = +3 Query: 411 RCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDCQNSPKN 539 +CFNCG +GH AR+C+A K C++CG GH +DC N Sbjct: 385 KCFNCGKEGHIARNCRA-PRKKGCWKCGREGHQMKDCTERQAN 426
>P04589:POL_HV1EL Gag-Pol polyprotein - Human immunodeficiency virus type 1 (isolate| ELI group M subtype D) (HIV-1) Length = 1435 Score = 48.5 bits (114), Expect = 6e-05 Identities = 20/43 (46%), Positives = 27/43 (62%) Frame = +3 Query: 411 RCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDCQNSPKN 539 +CFNCG +GH A++C+A K C+RCG GH +DC N Sbjct: 392 KCFNCGKEGHIAKNCRA-PRKKGCWRCGKEGHQLKDCTERQAN 433
>P03369:POL_HV1A2 Gag-Pol polyprotein - Human immunodeficiency virus type 1 (isolate| ARV2/SF2 group M subtype B) (HIV-1) Length = 1437 Score = 48.5 bits (114), Expect = 6e-05 Identities = 20/43 (46%), Positives = 27/43 (62%) Frame = +3 Query: 411 RCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDCQNSPKN 539 +CFNCG +GH A++C+A K C+RCG GH +DC N Sbjct: 393 KCFNCGKEGHIAKNCRA-PRKKGCWRCGREGHQMKDCTERQAN 434
>P53849:GIS2_YEAST Zinc finger protein GIS2 - Saccharomyces cerevisiae (Baker's yeast)| Length = 153 Score = 48.5 bits (114), Expect = 6e-05 Identities = 19/40 (47%), Positives = 25/40 (62%), Gaps = 2/40 (5%) Frame = +3 Query: 414 CFNCGIDGHWARDCKAGDWKN--RCYRCGDSGHIERDCQN 527 C+ CG H A+DC D + +CY CG +GH+ RDCQN Sbjct: 94 CYKCGGPNHMAKDCMKEDGISGLKCYTCGQAGHMSRDCQN 133 Score = 44.3 bits (103), Expect = 0.001 Identities = 16/37 (43%), Positives = 23/37 (62%) Frame = +3 Query: 411 RCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDC 521 +C+ CG GH +RDC+ CY C ++GHI +DC Sbjct: 117 KCYTCGQAGHMSRDCQND---RLCYNCNETGHISKDC 150 Score = 42.0 bits (97), Expect = 0.005 Identities = 16/42 (38%), Positives = 22/42 (52%) Frame = +3 Query: 411 RCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDCQNSPK 536 +C+NCG GH +C RC+ C +GHI R+C K Sbjct: 48 QCYNCGETGHVRSECTV----QRCFNCNQTGHISRECPEPKK 85 Score = 41.6 bits (96), Expect = 0.007 Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 5/42 (11%) Frame = +3 Query: 411 RCFNCGIDGHWARDCKAGDWKNR-----CYRCGDSGHIERDC 521 RCFNC GH +R+C +R CY+CG H+ +DC Sbjct: 66 RCFNCNQTGHISRECPEPKKTSRFSKVSCYKCGGPNHMAKDC 107 Score = 40.4 bits (93), Expect = 0.016 Identities = 16/36 (44%), Positives = 20/36 (55%) Frame = +3 Query: 414 CFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDC 521 C+ CG GH A DC D + CY C GH++ DC Sbjct: 6 CYVCGKIGHLAEDC---DSERLCYNCNKPGHVQTDC 38
>Q8AII2:GAG_SIVTN Gag polyprotein - Simian immunodeficiency virus (isolate TAN1)| (SIV-cpz) (Chimpanzee immunodeficiency virus) Length = 524 Score = 48.5 bits (114), Expect = 6e-05 Identities = 21/40 (52%), Positives = 26/40 (65%) Frame = +3 Query: 402 GSGRCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDC 521 G +CFNCG GH AR+C+A K C+RCG GH +DC Sbjct: 415 GQLQCFNCGKVGHTARNCRA-PRKKGCWRCGQEGHQMKDC 453
>Q9QSR4:GAG_HV1VI Gag polyprotein - Human immunodeficiency virus type 1 (isolate| VI850 group M subtype F1) (HIV-1) Length = 491 Score = 48.5 bits (114), Expect = 6e-05 Identities = 20/43 (46%), Positives = 27/43 (62%) Frame = +3 Query: 411 RCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDCQNSPKN 539 +CFNCG +GH AR+C+A K C++CG GH +DC N Sbjct: 385 KCFNCGKEGHIARNCRA-PRKKGCWKCGREGHQMKDCTERQAN 426
>P04592:GAG_HV1EL Gag polyprotein - Human immunodeficiency virus type 1 (isolate ELI| group M subtype D) (HIV-1) Length = 500 Score = 48.5 bits (114), Expect = 6e-05 Identities = 20/43 (46%), Positives = 27/43 (62%) Frame = +3 Query: 411 RCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDCQNSPKN 539 +CFNCG +GH A++C+A K C+RCG GH +DC N Sbjct: 392 KCFNCGKEGHIAKNCRA-PRKKGCWRCGKEGHQLKDCTERQAN 433
>P03349:GAG_HV1A2 Gag polyprotein - Human immunodeficiency virus type 1 (isolate| ARV2/SF2 group M subtype B) (HIV-1) Length = 502 Score = 48.5 bits (114), Expect = 6e-05 Identities = 20/43 (46%), Positives = 27/43 (62%) Frame = +3 Query: 411 RCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDCQNSPKN 539 +CFNCG +GH A++C+A K C+RCG GH +DC N Sbjct: 393 KCFNCGKEGHIAKNCRA-PRKKGCWRCGREGHQMKDCTERQAN 434
>O93182:GAG_HV190 Gag polyprotein - Human immunodeficiency virus type 1 (isolate| 90CF056 group M subtype H) (HIV-1) Length = 500 Score = 48.5 bits (114), Expect = 6e-05 Identities = 20/43 (46%), Positives = 27/43 (62%) Frame = +3 Query: 411 RCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDCQNSPKN 539 +CFNCG +GH AR+C+A K C++CG GH +DC N Sbjct: 392 KCFNCGKEGHIARNCRA-PRKKGCWKCGREGHQMKDCTERQAN 433
>Q8WW36:ZCH13_HUMAN Zinc finger CCHC domain-containing protein 13 - Homo sapiens| (Human) Length = 166 Score = 48.1 bits (113), Expect = 7e-05 Identities = 20/38 (52%), Positives = 24/38 (63%), Gaps = 2/38 (5%) Frame = +3 Query: 414 CFNCGIDGHWARDCKAGDWKNR--CYRCGDSGHIERDC 521 C+NCG GH A+DCK + R CY CG GH+ RDC Sbjct: 67 CYNCGRSGHIAKDCKDPKRERRQHCYTCGRLGHLARDC 104 Score = 45.4 bits (106), Expect = 5e-04 Identities = 18/36 (50%), Positives = 23/36 (63%) Frame = +3 Query: 414 CFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDC 521 C+ CG GH ARDC + +CY CG GHI++DC Sbjct: 91 CYTCGRLGHLARDCDRQK-EQKCYSCGKLGHIQKDC 125 Score = 40.8 bits (94), Expect = 0.012 Identities = 15/40 (37%), Positives = 25/40 (62%) Frame = +3 Query: 411 RCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDCQNS 530 +C++CG GH +DC + +CYRCG+ GH+ +C + Sbjct: 111 KCYSCGKLGHIQKDCA----QVKCYRCGEIGHVAINCSKA 146 Score = 39.7 bits (91), Expect = 0.026 Identities = 17/38 (44%), Positives = 23/38 (60%) Frame = +3 Query: 414 CFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDCQN 527 C+ CG G A++C N CY CG SGHI +DC++ Sbjct: 47 CYCCGESGRNAKNCVL--LGNICYNCGRSGHIAKDCKD 82
>P24740:POL_HV1U4 Gag-Pol polyprotein - Human immunodeficiency virus type 1 (isolate| U455 group M subtype A) (HIV-1) Length = 1428 Score = 48.1 bits (113), Expect = 7e-05 Identities = 19/43 (44%), Positives = 27/43 (62%) Frame = +3 Query: 411 RCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDCQNSPKN 539 +CFNCG +GH A++C+A K C++CG GH +DC N Sbjct: 385 KCFNCGKEGHLAKNCRA-PRKKGCWKCGKEGHQMKDCTERQAN 426
>P24736:GAG_HV1U4 Gag polyprotein - Human immunodeficiency virus type 1 (isolate U455| group M subtype A) (HIV-1) Length = 493 Score = 48.1 bits (113), Expect = 7e-05 Identities = 19/43 (44%), Positives = 27/43 (62%) Frame = +3 Query: 411 RCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDCQNSPKN 539 +CFNCG +GH A++C+A K C++CG GH +DC N Sbjct: 385 KCFNCGKEGHLAKNCRA-PRKKGCWKCGKEGHQMKDCTERQAN 426
>Q6PDU1:SFRS2_RAT Splicing factor, arginine/serine-rich 2 - Rattus norvegicus (Rat)| Length = 221 Score = 47.8 bits (112), Expect = 1e-04 Identities = 30/80 (37%), Positives = 39/80 (48%), Gaps = 8/80 (10%) Frame = +3 Query: 99 GNTRLYVGRLPSRTRTRDLEDLFGRYGRV--------RHVDMKHEFAFVEFSDPRDADEA 254 G T L V L RT L +F +YGRV R+ FAFV F D RDA++A Sbjct: 12 GMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDA 71 Query: 255 RYNLDGRDFDGSRMIVEFAK 314 +DG DG + V+ A+ Sbjct: 72 MDAMDGAVLDGRELRVQMAR 91
>Q06A98:SFRS2_PIG Splicing factor, arginine/serine-rich 2 - Sus scrofa (Pig)| Length = 221 Score = 47.8 bits (112), Expect = 1e-04 Identities = 30/80 (37%), Positives = 39/80 (48%), Gaps = 8/80 (10%) Frame = +3 Query: 99 GNTRLYVGRLPSRTRTRDLEDLFGRYGRV--------RHVDMKHEFAFVEFSDPRDADEA 254 G T L V L RT L +F +YGRV R+ FAFV F D RDA++A Sbjct: 12 GMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDA 71 Query: 255 RYNLDGRDFDGSRMIVEFAK 314 +DG DG + V+ A+ Sbjct: 72 MDAMDGAVLDGRELRVQMAR 91
>Q5R1W5:SFRS2_PANTR Splicing factor, arginine/serine-rich 2 - Pan troglodytes| (Chimpanzee) Length = 221 Score = 47.8 bits (112), Expect = 1e-04 Identities = 30/80 (37%), Positives = 39/80 (48%), Gaps = 8/80 (10%) Frame = +3 Query: 99 GNTRLYVGRLPSRTRTRDLEDLFGRYGRV--------RHVDMKHEFAFVEFSDPRDADEA 254 G T L V L RT L +F +YGRV R+ FAFV F D RDA++A Sbjct: 12 GMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDA 71 Query: 255 RYNLDGRDFDGSRMIVEFAK 314 +DG DG + V+ A+ Sbjct: 72 MDAMDGAVLDGRELRVQMAR 91
>Q62093:SFRS2_MOUSE Splicing factor, arginine/serine-rich 2 - Mus musculus (Mouse)| Length = 221 Score = 47.8 bits (112), Expect = 1e-04 Identities = 30/80 (37%), Positives = 39/80 (48%), Gaps = 8/80 (10%) Frame = +3 Query: 99 GNTRLYVGRLPSRTRTRDLEDLFGRYGRV--------RHVDMKHEFAFVEFSDPRDADEA 254 G T L V L RT L +F +YGRV R+ FAFV F D RDA++A Sbjct: 12 GMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDA 71 Query: 255 RYNLDGRDFDGSRMIVEFAK 314 +DG DG + V+ A+ Sbjct: 72 MDAMDGAVLDGRELRVQMAR 91
>Q01130:SFRS2_HUMAN Splicing factor, arginine/serine-rich 2 - Homo sapiens (Human)| Length = 221 Score = 47.8 bits (112), Expect = 1e-04 Identities = 30/80 (37%), Positives = 39/80 (48%), Gaps = 8/80 (10%) Frame = +3 Query: 99 GNTRLYVGRLPSRTRTRDLEDLFGRYGRV--------RHVDMKHEFAFVEFSDPRDADEA 254 G T L V L RT L +F +YGRV R+ FAFV F D RDA++A Sbjct: 12 GMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDA 71 Query: 255 RYNLDGRDFDGSRMIVEFAK 314 +DG DG + V+ A+ Sbjct: 72 MDAMDGAVLDGRELRVQMAR 91
>P30352:SFRS2_CHICK Splicing factor, arginine/serine-rich 2 - Gallus gallus (Chicken)| Length = 221 Score = 47.8 bits (112), Expect = 1e-04 Identities = 30/80 (37%), Positives = 39/80 (48%), Gaps = 8/80 (10%) Frame = +3 Query: 99 GNTRLYVGRLPSRTRTRDLEDLFGRYGRV--------RHVDMKHEFAFVEFSDPRDADEA 254 G T L V L RT L +F +YGRV R+ FAFV F D RDA++A Sbjct: 12 GMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDA 71 Query: 255 RYNLDGRDFDGSRMIVEFAK 314 +DG DG + V+ A+ Sbjct: 72 MDAMDGAVLDGRELRVQMAR 91
>Q3MHR5:SFRS2_BOVIN Splicing factor, arginine/serine-rich 2 - Bos taurus (Bovine)| Length = 221 Score = 47.8 bits (112), Expect = 1e-04 Identities = 30/80 (37%), Positives = 39/80 (48%), Gaps = 8/80 (10%) Frame = +3 Query: 99 GNTRLYVGRLPSRTRTRDLEDLFGRYGRV--------RHVDMKHEFAFVEFSDPRDADEA 254 G T L V L RT L +F +YGRV R+ FAFV F D RDA++A Sbjct: 12 GMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDA 71 Query: 255 RYNLDGRDFDGSRMIVEFAK 314 +DG DG + V+ A+ Sbjct: 72 MDAMDGAVLDGRELRVQMAR 91
>Q82851:POL_JEMBR Gag-Pol polyprotein - Jembrana disease virus (JDV)| Length = 1432 Score = 47.8 bits (112), Expect = 1e-04 Identities = 17/39 (43%), Positives = 26/39 (66%) Frame = +3 Query: 411 RCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDCQN 527 RC+ CG GH RDCK +C++CG GH++R+C++ Sbjct: 369 RCYGCGKPGHIRRDCK----NQKCFKCGKPGHLQRNCKS 403
>P35963:POL_HV1Y2 Gag-Pol polyprotein - Human immunodeficiency virus type 1 (isolate| YU-2 group M subtype B) (HIV-1) Length = 1435 Score = 47.8 bits (112), Expect = 1e-04 Identities = 19/43 (44%), Positives = 27/43 (62%) Frame = +3 Query: 411 RCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDCQNSPKN 539 +CFNCG +GH A++C+A K C++CG GH +DC N Sbjct: 391 KCFNCGKEGHIAKNCRA-PRKKGCWKCGKEGHQMKDCTERQAN 432
>P12497:POL_HV1N5 Gag-Pol polyprotein - Human immunodeficiency virus type 1 (isolate| NY5 group M subtype B) (HIV-1) Length = 1435 Score = 47.8 bits (112), Expect = 1e-04 Identities = 19/43 (44%), Positives = 27/43 (62%) Frame = +3 Query: 411 RCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDCQNSPKN 539 +CFNCG +GH A++C+A K C++CG GH +DC N Sbjct: 391 KCFNCGKEGHIAKNCRA-PRKKGCWKCGKEGHQMKDCTERQAN 432
>P05961:POL_HV1MN Gag-Pol polyprotein - Human immunodeficiency virus type 1 (isolate| MN group M subtype B) (HIV-1) Length = 1441 Score = 47.8 bits (112), Expect = 1e-04 Identities = 19/43 (44%), Positives = 27/43 (62%) Frame = +3 Query: 411 RCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDCQNSPKN 539 +CFNCG +GH A++C+A K C++CG GH +DC N Sbjct: 394 KCFNCGKEGHIAKNCRA-PRKRGCWKCGKEGHQMKDCTERQAN 435
>Q73368:POL_HV1B9 Gag-Pol polyprotein - Human immunodeficiency virus type 1 (strain| 89.6 group M subtype B) (HIV-1) Length = 1435 Score = 47.8 bits (112), Expect = 1e-04 Identities = 19/43 (44%), Positives = 27/43 (62%) Frame = +3 Query: 411 RCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDCQNSPKN 539 +CFNCG +GH A++C+A K C++CG GH +DC N Sbjct: 391 KCFNCGKEGHIAKNCRA-PRKKGCWKCGKEGHQMKDCTERQAN 432
>O41798:POL_HV19N Gag-Pol polyprotein - Human immunodeficiency virus type 1 (isolate| 92NG083 group M subtype G) (HIV-1) Length = 1435 Score = 47.8 bits (112), Expect = 1e-04 Identities = 19/43 (44%), Positives = 27/43 (62%) Frame = +3 Query: 411 RCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDCQNSPKN 539 +CFNCG +GH AR+C+A K C++CG GH ++C N Sbjct: 392 KCFNCGKEGHLARNCRA-PRKKGCWKCGKEGHQMKECTERQAN 433
>O93215:POL_HV190 Gag-Pol polyprotein - Human immunodeficiency virus type 1 (isolate| 90CF056 group M subtype H) (HIV-1) Length = 1435 Score = 47.8 bits (112), Expect = 1e-04 Identities = 19/37 (51%), Positives = 26/37 (70%) Frame = +3 Query: 411 RCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDC 521 +CFNCG +GH AR+C+A K C++CG GH +DC Sbjct: 392 KCFNCGKEGHIARNCRA-PRKKGCWKCGREGHQMKDC 427
>Q82850:GAG_JEMBR Gag polyprotein - Jembrana disease virus (JDV)| Length = 436 Score = 47.8 bits (112), Expect = 1e-04 Identities = 17/39 (43%), Positives = 26/39 (66%) Frame = +3 Query: 411 RCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDCQN 527 RC+ CG GH RDCK +C++CG GH++R+C++ Sbjct: 369 RCYGCGKPGHIRRDCK----NQKCFKCGKPGHLQRNCKS 403
>P35962:GAG_HV1Y2 Gag polyprotein - Human immunodeficiency virus type 1 (isolate YU-2| group M subtype B) (HIV-1) Length = 500 Score = 47.8 bits (112), Expect = 1e-04 Identities = 19/43 (44%), Positives = 27/43 (62%) Frame = +3 Query: 411 RCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDCQNSPKN 539 +CFNCG +GH A++C+A K C++CG GH +DC N Sbjct: 391 KCFNCGKEGHIAKNCRA-PRKKGCWKCGKEGHQMKDCTERQAN 432
>P12493:GAG_HV1N5 Gag polyprotein - Human immunodeficiency virus type 1 (isolate NY5| group M subtype B) (HIV-1) Length = 500 Score = 47.8 bits (112), Expect = 1e-04 Identities = 19/43 (44%), Positives = 27/43 (62%) Frame = +3 Query: 411 RCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDCQNSPKN 539 +CFNCG +GH A++C+A K C++CG GH +DC N Sbjct: 391 KCFNCGKEGHIAKNCRA-PRKKGCWKCGKEGHQMKDCTERQAN 432
>P05888:GAG_HV1MN Gag polyprotein - Human immunodeficiency virus type 1 (isolate MN| group M subtype B) (HIV-1) Length = 507 Score = 47.8 bits (112), Expect = 1e-04 Identities = 19/43 (44%), Positives = 27/43 (62%) Frame = +3 Query: 411 RCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDCQNSPKN 539 +CFNCG +GH A++C+A K C++CG GH +DC N Sbjct: 394 KCFNCGKEGHIAKNCRA-PRKRGCWKCGKEGHQMKDCTERQAN 435
>Q73367:GAG_HV1B9 Gag polyprotein - Human immunodeficiency virus type 1 (strain 89.6| group M subtype B) (HIV-1) Length = 500 Score = 47.8 bits (112), Expect = 1e-04 Identities = 19/43 (44%), Positives = 27/43 (62%) Frame = +3 Query: 411 RCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDCQNSPKN 539 +CFNCG +GH A++C+A K C++CG GH +DC N Sbjct: 391 KCFNCGKEGHIAKNCRA-PRKKGCWKCGKEGHQMKDCTERQAN 432
>P0C1K7:GAG_HV19N Gag polyprotein - Human immunodeficiency virus type 1 (isolate| 92NG083 group M subtype G) (HIV-1) Length = 497 Score = 47.8 bits (112), Expect = 1e-04 Identities = 19/43 (44%), Positives = 27/43 (62%) Frame = +3 Query: 411 RCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDCQNSPKN 539 +CFNCG +GH AR+C+A K C++CG GH ++C N Sbjct: 392 KCFNCGKEGHLARNCRA-PRKKGCWKCGKEGHQMKECTERQAN 433
>P20892:POL_HV1OY Gag-Pol polyprotein - Human immunodeficiency virus type 1 (isolate| OYI group M subtype B) (HIV-1) Length = 1434 Score = 47.4 bits (111), Expect = 1e-04 Identities = 19/43 (44%), Positives = 27/43 (62%) Frame = +3 Query: 411 RCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDCQNSPKN 539 +CFNCG +GH A++C+A K C++CG GH +DC N Sbjct: 390 KCFNCGKEGHIAKNCRA-PRKKGCWKCGREGHQMKDCTERQAN 431
>P20875:POL_HV1JR Gag-Pol polyprotein - Human immunodeficiency virus type 1 (isolate| JRCSF group M subtype B) (HIV-1) Length = 1439 Score = 47.4 bits (111), Expect = 1e-04 Identities = 19/43 (44%), Positives = 27/43 (62%) Frame = +3 Query: 411 RCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDCQNSPKN 539 +CFNCG +GH AR+C+A K C++CG GH ++C N Sbjct: 391 KCFNCGKEGHIARNCRA-PRKKGCWKCGKEGHQMKECTERQAN 432
>Q29RT0:HNRPG_BOVIN Heterogeneous nuclear ribonucleoprotein G - Bos taurus (Bovine)| Length = 396 Score = 47.4 bits (111), Expect = 1e-04 Identities = 28/82 (34%), Positives = 41/82 (50%), Gaps = 8/82 (9%) Frame = +3 Query: 81 ERDRYGGNTRLYVGRLPSRTRTRDLEDLFGRYGRV--------RHVDMKHEFAFVEFSDP 236 E DR G +L++G L T + LE FG+YGR+ R + FAF+ F P Sbjct: 3 EADRPG---KLFIGGLNLETDEKSLEATFGKYGRISEVLLMKDRETNKSRGFAFITFESP 59 Query: 237 RDADEARYNLDGRDFDGSRMIV 302 DA A +++G+ DG + V Sbjct: 60 ADAKAAVRDMNGKSLDGKAIKV 81
>O76743:GLH4_CAEEL ATP-dependent RNA helicase glh-4 - Caenorhabditis elegans| Length = 1156 Score = 47.4 bits (111), Expect = 1e-04 Identities = 20/41 (48%), Positives = 24/41 (58%), Gaps = 1/41 (2%) Frame = +3 Query: 408 GRCFNCGIDGHWARDCKAGDW-KNRCYRCGDSGHIERDCQN 527 G C NCGI+GH+A DC + C CG GH +DCQN Sbjct: 616 GPCRNCGIEGHFAVDCDQPKVPRGPCRNCGQEGHFAKDCQN 656 Score = 43.1 bits (100), Expect = 0.002 Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 4/54 (7%) Frame = +3 Query: 393 PPPGSGRCFNCGIDGHWARDCK----AGDWKNRCYRCGDSGHIERDCQNSPKNL 542 P G C NCG +GH+A+DC+ + C RC + GH +C PK+L Sbjct: 634 PKVPRGPCRNCGQEGHFAKDCQNERVRMEPTEPCRRCAEEGHWGYECPTRPKDL 687
>P20889:GAG_HV1OY Gag polyprotein - Human immunodeficiency virus type 1 (isolate OYI| group M subtype B) (HIV-1) Length = 499 Score = 47.4 bits (111), Expect = 1e-04 Identities = 19/43 (44%), Positives = 27/43 (62%) Frame = +3 Query: 411 RCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDCQNSPKN 539 +CFNCG +GH A++C+A K C++CG GH +DC N Sbjct: 390 KCFNCGKEGHIAKNCRA-PRKKGCWKCGREGHQMKDCTERQAN 431
>P20873:GAG_HV1JR Gag polyprotein - Human immunodeficiency virus type 1 (isolate| JRCSF group M subtype B) (HIV-1) Length = 504 Score = 47.4 bits (111), Expect = 1e-04 Identities = 19/43 (44%), Positives = 27/43 (62%) Frame = +3 Query: 411 RCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDCQNSPKN 539 +CFNCG +GH AR+C+A K C++CG GH ++C N Sbjct: 391 KCFNCGKEGHIARNCRA-PRKKGCWKCGKEGHQMKECTERQAN 432
>O89291:GAG_HV193 Gag polyprotein - Human immunodeficiency virus type 1 (isolate| 93BR020 group M subtype F1) (HIV-1) Length = 492 Score = 47.4 bits (111), Expect = 1e-04 Identities = 19/43 (44%), Positives = 27/43 (62%) Frame = +3 Query: 411 RCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDCQNSPKN 539 +CFNCG +GH A++C+A K C++CG GH +DC N Sbjct: 386 KCFNCGKEGHIAKNCRA-PRKKGCWKCGREGHQMKDCTERQAN 427
>Q74120:POL_HV2KR Gag-Pol polyprotein - Human immunodeficiency virus type 2 (isolate| KR subtype A) (HIV-2) Length = 1463 Score = 47.0 bits (110), Expect = 2e-04 Identities = 18/37 (48%), Positives = 26/37 (70%) Frame = +3 Query: 411 RCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDC 521 +C+NCG DGH AR C+A + C++CG SGH+ +C Sbjct: 390 KCWNCGKDGHSARQCRA-PRRQGCWKCGKSGHVMANC 425
>P12499:POL_HV1Z2 Gag-Pol polyprotein - Human immunodeficiency virus type 1 (isolate| Z2/CDC-Z34 group M subtype D) (HIV-1) Length = 1436 Score = 47.0 bits (110), Expect = 2e-04 Identities = 19/43 (44%), Positives = 27/43 (62%) Frame = +3 Query: 411 RCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDCQNSPKN 539 +CFNCG +GH A++C+A K C++CG GH +DC N Sbjct: 393 KCFNCGKEGHIAKNCRAPRRKG-CWKCGKEGHQLKDCTERQAN 434
>Q9WC63:POL_HV1S9 Gag-Pol polyprotein - Human immunodeficiency virus type 1 (isolate| SE9173 group M subtype J) (HIV-1) Length = 1432 Score = 47.0 bits (110), Expect = 2e-04 Identities = 19/43 (44%), Positives = 26/43 (60%) Frame = +3 Query: 411 RCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDCQNSPKN 539 +CFNCG GH A++C+A K C++CG GH +DC N Sbjct: 390 KCFNCGKQGHIAKNCRA-PRKKGCWKCGKEGHQMKDCTERQAN 431
>Q9WC54:POL_HV1S2 Gag-Pol polyprotein - Human immunodeficiency virus type 1 (isolate| SE9280 group M subtype J) (HIV-1) Length = 1432 Score = 47.0 bits (110), Expect = 2e-04 Identities = 19/43 (44%), Positives = 26/43 (60%) Frame = +3 Query: 411 RCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDCQNSPKN 539 +CFNCG GH A++C+A K C++CG GH +DC N Sbjct: 390 KCFNCGKQGHIAKNCRA-PRKKGCWKCGKEGHQMKDCTERQAN 431
>P05959:POL_HV1RH Gag-Pol polyprotein - Human immunodeficiency virus type 1 (isolate| RF/HAT3 group M subtype B) (HIV-1) Length = 1436 Score = 47.0 bits (110), Expect = 2e-04 Identities = 19/39 (48%), Positives = 26/39 (66%) Frame = +3 Query: 411 RCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDCQN 527 +CFNCG GH A++C+A K C++CG GH +DC N Sbjct: 391 KCFNCGKVGHIAKNCRA-PRKKGCWKCGKEGHQMKDCTN 428
>Q9U1N0:HRP65_CHITE Hrp65 protein - Chironomus tentans (Midge)| Length = 535 Score = 47.0 bits (110), Expect = 2e-04 Identities = 24/79 (30%), Positives = 42/79 (53%), Gaps = 2/79 (2%) Frame = +3 Query: 81 ERDRYGGNTRLYVGRLPSRTRTRDLEDLFGRYGRVRH--VDMKHEFAFVEFSDPRDADEA 254 E ++ G RLY+G L S +L++LF YG + ++ + FAF++ +A+ A Sbjct: 105 EEIKFSGRNRLYIGNLTSDVTEEELKELFSPYGEISEAFINAEKNFAFLKIDYRANAERA 164 Query: 255 RYNLDGRDFDGSRMIVEFA 311 + +LDGR + + FA Sbjct: 165 KKDLDGRMRKNKPIRIRFA 183
>O75526:HNRGT_HUMAN Testis-specific heterogeneous nuclear ribonucleoprotein G-T - Homo| sapiens (Human) Length = 392 Score = 47.0 bits (110), Expect = 2e-04 Identities = 29/82 (35%), Positives = 41/82 (50%), Gaps = 8/82 (9%) Frame = +3 Query: 81 ERDRYGGNTRLYVGRLPSRTRTRDLEDLFGRYGRV--------RHVDMKHEFAFVEFSDP 236 E DR G +L++G L T + LE FG+YGR+ R + FAFV F P Sbjct: 3 EADRPG---KLFIGGLNLETDEKALEAEFGKYGRIVEVLLMKDRETNKSRGFAFVTFESP 59 Query: 237 RDADEARYNLDGRDFDGSRMIV 302 DA A +++G+ DG + V Sbjct: 60 ADAKAAARDMNGKSLDGKAIKV 81
>Q74119:GAG_HV2KR Gag polyprotein - Human immunodeficiency virus type 2 (isolate KR| subtype A) (HIV-2) Length = 521 Score = 47.0 bits (110), Expect = 2e-04 Identities = 18/37 (48%), Positives = 26/37 (70%) Frame = +3 Query: 411 RCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDC 521 +C+NCG DGH AR C+A + C++CG SGH+ +C Sbjct: 390 KCWNCGKDGHSARQCRA-PRRQGCWKCGKSGHVMANC 425
>P12495:GAG_HV1Z2 Gag polyprotein - Human immunodeficiency virus type 1 (isolate| Z2/CDC-Z34 group M subtype D) (HIV-1) Length = 501 Score = 47.0 bits (110), Expect = 2e-04 Identities = 19/43 (44%), Positives = 27/43 (62%) Frame = +3 Query: 411 RCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDCQNSPKN 539 +CFNCG +GH A++C+A K C++CG GH +DC N Sbjct: 393 KCFNCGKEGHIAKNCRAPRRKG-CWKCGKEGHQLKDCTERQAN 434
>Q9WC62:GAG_HV1S9 Gag polyprotein - Human immunodeficiency virus type 1 (isolate| SE9173 group M subtype J) (HIV-1) Length = 497 Score = 47.0 bits (110), Expect = 2e-04 Identities = 19/43 (44%), Positives = 26/43 (60%) Frame = +3 Query: 411 RCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDCQNSPKN 539 +CFNCG GH A++C+A K C++CG GH +DC N Sbjct: 390 KCFNCGKQGHIAKNCRA-PRKKGCWKCGKEGHQMKDCTERQAN 431
>Q9WC53:GAG_HV1S2 Gag polyprotein - Human immunodeficiency virus type 1 (isolate| SE9280 group M subtype J) (HIV-1) Length = 497 Score = 47.0 bits (110), Expect = 2e-04 Identities = 19/43 (44%), Positives = 26/43 (60%) Frame = +3 Query: 411 RCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDCQNSPKN 539 +CFNCG GH A++C+A K C++CG GH +DC N Sbjct: 390 KCFNCGKQGHIAKNCRA-PRKKGCWKCGKEGHQMKDCTERQAN 431
>P05890:GAG_HV1RH Gag polyprotein - Human immunodeficiency virus type 1 (isolate| RF/HAT3 group M subtype B) (HIV-1) Length = 501 Score = 47.0 bits (110), Expect = 2e-04 Identities = 19/39 (48%), Positives = 26/39 (66%) Frame = +3 Query: 411 RCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDCQN 527 +CFNCG GH A++C+A K C++CG GH +DC N Sbjct: 391 KCFNCGKVGHIAKNCRA-PRKKGCWKCGKEGHQMKDCTN 428
>O43251:RBM9_HUMAN RNA-binding protein 9 - Homo sapiens (Human)| Length = 390 Score = 46.6 bits (109), Expect = 2e-04 Identities = 26/74 (35%), Positives = 39/74 (52%), Gaps = 6/74 (8%) Frame = +3 Query: 108 RLYVGRLPSRTRTRDLEDLFGRYGRVRHVDM------KHEFAFVEFSDPRDADEARYNLD 269 RL+V +P R R DL +FG++G++ V++ F FV F + DAD AR L Sbjct: 122 RLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLH 181 Query: 270 GRDFDGSRMIVEFA 311 G +G ++ V A Sbjct: 182 GTVVEGRKIEVNNA 195
>Q9Q720:POL_HV1V9 Gag-Pol polyprotein - Human immunodeficiency virus type 1 (isolate| VI991 group M subtype H) (HIV-1) Length = 1436 Score = 46.6 bits (109), Expect = 2e-04 Identities = 20/48 (41%), Positives = 28/48 (58%) Frame = +3 Query: 396 PPGSGRCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDCQNSPKN 539 P + +C NCG +GH AR+C+A K C++CG GH +DC N Sbjct: 389 PRRTVKCSNCGKEGHIARNCRA-PRKKGCWKCGQEGHQMKDCTGRQAN 435
>O89290:POL_HV193 Gag-Pol polyprotein - Human immunodeficiency virus type 1 (isolate| 93BR020 group M subtype F1) (HIV-1) Length = 1430 Score = 46.6 bits (109), Expect = 2e-04 Identities = 18/37 (48%), Positives = 26/37 (70%) Frame = +3 Query: 411 RCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDC 521 +CFNCG +GH A++C+A K C++CG GH +DC Sbjct: 386 KCFNCGKEGHIAKNCRA-PRKKGCWKCGREGHQMKDC 421
>Q9Q721:GAG_HV1V9 Gag polyprotein - Human immunodeficiency virus type 1 (isolate| VI991 group M subtype H) (HIV-1) Length = 498 Score = 46.6 bits (109), Expect = 2e-04 Identities = 20/48 (41%), Positives = 28/48 (58%) Frame = +3 Query: 396 PPGSGRCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDCQNSPKN 539 P + +C NCG +GH AR+C+A K C++CG GH +DC N Sbjct: 389 PRRTVKCSNCGKEGHIARNCRA-PRKKGCWKCGQEGHQMKDCTGRQAN 435
>Q9JJ43:A2BP1_MOUSE Ataxin-2-binding protein 1 - Mus musculus (Mouse)| Length = 396 Score = 46.6 bits (109), Expect = 2e-04 Identities = 26/74 (35%), Positives = 39/74 (52%), Gaps = 6/74 (8%) Frame = +3 Query: 108 RLYVGRLPSRTRTRDLEDLFGRYGRVRHVDM------KHEFAFVEFSDPRDADEARYNLD 269 RL+V +P R R DL +FG++G++ V++ F FV F + DAD AR L Sbjct: 117 RLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLH 176 Query: 270 GRDFDGSRMIVEFA 311 G +G ++ V A Sbjct: 177 GTVVEGRKIEVNNA 190
>Q9NWB1:A2BP1_HUMAN Ataxin-2-binding protein 1 - Homo sapiens (Human)| Length = 397 Score = 46.6 bits (109), Expect = 2e-04 Identities = 26/74 (35%), Positives = 39/74 (52%), Gaps = 6/74 (8%) Frame = +3 Query: 108 RLYVGRLPSRTRTRDLEDLFGRYGRVRHVDM------KHEFAFVEFSDPRDADEARYNLD 269 RL+V +P R R DL +FG++G++ V++ F FV F + DAD AR L Sbjct: 118 RLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLH 177 Query: 270 GRDFDGSRMIVEFA 311 G +G ++ V A Sbjct: 178 GTVVEGRKIEVNNA 191
>P12451:POL_HV2SB Gag-Pol polyprotein - Human immunodeficiency virus type 2 (isolate| SBLISY subtype A) (HIV-2) Length = 1462 Score = 45.8 bits (107), Expect = 4e-04 Identities = 18/37 (48%), Positives = 26/37 (70%) Frame = +3 Query: 411 RCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDC 521 +C+NCG +GH AR C+A + C++CG SGHI +C Sbjct: 389 KCWNCGKEGHSARQCRA-PRRQGCWKCGKSGHIMANC 424
>P17757:POL_HV2D1 Gag-Pol polyprotein - Human immunodeficiency virus type 2 (isolate| D194 subtype A) (HIV-2) Length = 1462 Score = 45.8 bits (107), Expect = 4e-04 Identities = 18/37 (48%), Positives = 26/37 (70%) Frame = +3 Query: 411 RCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDC 521 RC+NCG +GH A+ C+A + C++CG SGHI +C Sbjct: 390 RCWNCGKEGHSAKQCRA-PRRQGCWKCGKSGHIMANC 425
>P19560:POL_BIV29 Gag-Pol polyprotein - Bovine immunodeficiency virus (strain R29)| (BIV) (Bovine immunodeficiency-like virus) Length = 1475 Score = 45.8 bits (107), Expect = 4e-04 Identities = 18/49 (36%), Positives = 27/49 (55%) Frame = +3 Query: 396 PPGSGRCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDCQNSPKNL 542 P RC+ CG GH R+CK + +CY CG GH R+C++ + + Sbjct: 399 PEDGRRCYGCGKTGHLKRNCK----QQKCYHCGKPGHQARNCRSKNREV 443
>P27484:GRP2_NICSY Glycine-rich protein 2 - Nicotiana sylvestris (Wood tobacco)| Length = 214 Score = 45.8 bits (107), Expect = 4e-04 Identities = 22/55 (40%), Positives = 26/55 (47%), Gaps = 15/55 (27%) Frame = +3 Query: 402 GSGRCFNCGIDGHWARDCK---------------AGDWKNRCYRCGDSGHIERDC 521 GSG CF CG GH+ARDC G CY+CG+ GH R+C Sbjct: 156 GSG-CFKCGESGHFARDCSQSGGGGGGGRFGGGGGGGGGGGCYKCGEDGHFAREC 209 Score = 35.8 bits (81), Expect = 0.38 Identities = 12/21 (57%), Positives = 16/21 (76%) Frame = +3 Query: 402 GSGRCFNCGIDGHWARDCKAG 464 G G C+ CG DGH+AR+C +G Sbjct: 192 GGGGCYKCGEDGHFARECTSG 212 Score = 32.3 bits (72), Expect = 4.2 Identities = 10/17 (58%), Positives = 13/17 (76%) Frame = +3 Query: 480 CYRCGDSGHIERDCQNS 530 C++CG+SGH RDC S Sbjct: 159 CFKCGESGHFARDCSQS 175
>P35955:GAG_VILVK Gag polyprotein [Contains: Core protein p16; Core protein p25; Core| protein p14] - Maedi visna virus (strain KV1772) (MVV) (Visna lentivirus) Length = 442 Score = 45.8 bits (107), Expect = 4e-04 Identities = 17/38 (44%), Positives = 25/38 (65%) Frame = +3 Query: 411 RCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDCQ 524 +C+NCG GH AR C+ G C+ CG GH+++DC+ Sbjct: 386 KCYNCGKPGHLARQCRQG---IICHHCGKRGHMQKDCR 420
>P23425:GAG_VILV2 Gag polyprotein [Contains: Core protein p16; Core protein p25; Core| protein p14] - Maedi visna virus (strain 1514 / clone LV1-1KS2) (MVV) (Visna lentivirus) Length = 442 Score = 45.8 bits (107), Expect = 4e-04 Identities = 17/38 (44%), Positives = 25/38 (65%) Frame = +3 Query: 411 RCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDCQ 524 +C+NCG GH AR C+ G C+ CG GH+++DC+ Sbjct: 386 KCYNCGKPGHLARQCRQG---IICHHCGKRGHMQKDCR 420
>P23424:GAG_VILV1 Gag polyprotein [Contains: Core protein p16; Core protein p25; Core| protein p14] - Maedi visna virus (strain 1514 / clone LV1-1KS1) (MVV) (Visna lentivirus) Length = 442 Score = 45.8 bits (107), Expect = 4e-04 Identities = 17/38 (44%), Positives = 25/38 (65%) Frame = +3 Query: 411 RCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDCQ 524 +C+NCG GH AR C+ G C+ CG GH+++DC+ Sbjct: 386 KCYNCGKPGHLARQCRQG---IICHHCGKRGHMQKDCR 420
>P03352:GAG_VILV Gag polyprotein [Contains: Core protein p16; Core protein p25; Core| protein p14] - Maedi visna virus (strain 1514) (MVV) (Visna lentivirus) Length = 442 Score = 45.8 bits (107), Expect = 4e-04 Identities = 17/38 (44%), Positives = 25/38 (65%) Frame = +3 Query: 411 RCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDCQ 524 +C+NCG GH AR C+ G C+ CG GH+++DC+ Sbjct: 386 KCYNCGKPGHLARQCRQG---IICHHCGKRGHMQKDCR 420
>P12450:GAG_HV2SB Gag polyprotein - Human immunodeficiency virus type 2 (isolate| SBLISY subtype A) (HIV-2) Length = 520 Score = 45.8 bits (107), Expect = 4e-04 Identities = 18/37 (48%), Positives = 26/37 (70%) Frame = +3 Query: 411 RCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDC 521 +C+NCG +GH AR C+A + C++CG SGHI +C Sbjct: 389 KCWNCGKEGHSARQCRA-PRRQGCWKCGKSGHIMANC 424
>P17756:GAG_HV2D1 Gag polyprotein - Human immunodeficiency virus type 2 (isolate D194| subtype A) (HIV-2) Length = 521 Score = 45.8 bits (107), Expect = 4e-04 Identities = 18/37 (48%), Positives = 26/37 (70%) Frame = +3 Query: 411 RCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDC 521 RC+NCG +GH A+ C+A + C++CG SGHI +C Sbjct: 390 RCWNCGKEGHSAKQCRA-PRRQGCWKCGKSGHIMANC 425
>P33458:GAG_CAEVC Gag polyprotein [Contains: Core protein p16; Core protein p25; Core| protein p14] - Caprine arthritis encephalitis virus (strain Cork) (CAEV-Co) Length = 441 Score = 45.8 bits (107), Expect = 4e-04 Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 7/49 (14%) Frame = +3 Query: 399 PGSG-------RCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDCQ 524 PG G RC+NCG GH AR C+ G C+ CG GH++++C+ Sbjct: 369 PGKGKGNGQPQRCYNCGKPGHQARQCRQG---IICHNCGKRGHMQKECR 414
>P19558:GAG_BIV29 Gag polyprotein - Bovine immunodeficiency virus (strain R29) (BIV)| (Bovine immunodeficiency-like virus) Length = 476 Score = 45.4 bits (106), Expect = 5e-04 Identities = 18/44 (40%), Positives = 25/44 (56%) Frame = +3 Query: 396 PPGSGRCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDCQN 527 P RC+ CG GH R+CK + +CY CG GH R+C++ Sbjct: 399 PEDGRRCYGCGKTGHLKRNCK----QQKCYHCGKPGHQARNCRS 438
>Q27K34:PLA2_ORYSA Protein terminal ear1 homolog - Oryza sativa (Rice)| Length = 683 Score = 45.1 bits (105), Expect = 6e-04 Identities = 22/58 (37%), Positives = 36/58 (62%), Gaps = 3/58 (5%) Frame = +3 Query: 150 DLEDLFGRYGRVRHVD---MKHEFAFVEFSDPRDADEARYNLDGRDFDGSRMIVEFAK 314 +L ++F YG V+ V ++ FVEF D RDAD A + L+G++ G R++VE+ + Sbjct: 237 ELREIFQAYGDVKDVRESALRPSNKFVEFFDTRDADRALHELNGKELFGRRLVVEYTR 294
>Q5BGA9:MRD1_EMENI Multiple RNA-binding domain-containing protein 1 - Emericella| nidulans (Aspergillus nidulans) Length = 819 Score = 45.1 bits (105), Expect = 6e-04 Identities = 23/70 (32%), Positives = 39/70 (55%), Gaps = 8/70 (11%) Frame = +3 Query: 102 NTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE--------FAFVEFSDPRDADEAR 257 + RL+V L T+ +LE +F +G++ + + + FA+V+++DP A EA Sbjct: 294 SARLFVRNLSYETKESELEPVFSPFGKIEEIHVAFDTRFTTSKGFAYVQYADPDAAVEAY 353 Query: 258 YNLDGRDFDG 287 NLDG+ F G Sbjct: 354 RNLDGKIFQG 363 Score = 43.1 bits (100), Expect = 0.002 Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 7/76 (9%) Frame = +3 Query: 105 TRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE-------FAFVEFSDPRDADEARYN 263 T++ + LP + +D+ LFG YG++R V + + F F +F R+A+ A Sbjct: 697 TKIIIKNLPFQATKKDVRSLFGAYGQLRSVRVPKKFDRSARGFGFADFVSAREAENAMDA 756 Query: 264 LDGRDFDGSRMIVEFA 311 L G R+++EFA Sbjct: 757 LKNTHLLGRRLVLEFA 772
>Q5AJS6:MRD1_CANAL Multiple RNA-binding domain-containing protein 1 - Candida albicans| (Yeast) Length = 841 Score = 45.1 bits (105), Expect = 6e-04 Identities = 23/80 (28%), Positives = 47/80 (58%), Gaps = 7/80 (8%) Frame = +3 Query: 96 GGNTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHEF-------AFVEFSDPRDADEA 254 G ++++ + LP +DL +LFG +G+++ V + +F AFVEF+ ++A+ A Sbjct: 714 GKSSKIIIKNLPFEATRKDLLELFGAFGQLKSVRVPKKFDQSARGFAFVEFNLMKEAETA 773 Query: 255 RYNLDGRDFDGSRMIVEFAK 314 L+G G R+++++A+ Sbjct: 774 MSQLEGVHLLGRRLVMQYAE 793
>Q4R813:HNRGT_MACFA Testis-specific heterogeneous nuclear ribonucleoprotein G-T -| Macaca fascicularis (Crab eating macaque) (Cynomolgus monkey) Length = 394 Score = 45.1 bits (105), Expect = 6e-04 Identities = 28/82 (34%), Positives = 41/82 (50%), Gaps = 8/82 (9%) Frame = +3 Query: 81 ERDRYGGNTRLYVGRLPSRTRTRDLEDLFGRYGRV--------RHVDMKHEFAFVEFSDP 236 E DR G +L++G L T + LE FG+YGR+ R + FAFV F P Sbjct: 3 EADRPG---KLFIGGLNLETDEKALEAEFGKYGRIVEVLLMKDRETNKSRGFAFVTFESP 59 Query: 237 RDADEARYNLDGRDFDGSRMIV 302 +A A +++G+ DG + V Sbjct: 60 ANAKAAARDMNGKSLDGKAIKV 81
>P69732:GAG_EIAVY Gag polyprotein [Contains: Matrix protein p15 - Equine infectious| anemia virus (strain Wyoming) (EIAV) Length = 486 Score = 43.9 bits (102), Expect(2) = 6e-04 Identities = 17/49 (34%), Positives = 26/49 (53%) Frame = +3 Query: 393 PPPGSGRCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDCQNSPKN 539 P + C+NCG GH + C+A C++C GH + C++ PKN Sbjct: 376 PLKAAQTCYNCGKPGHLSSQCRA---PKVCFKCKQPGHFSKQCRSVPKN 421 Score = 20.4 bits (41), Expect(2) = 6e-04 Identities = 7/12 (58%), Positives = 9/12 (75%) Frame = +1 Query: 646 PQGGMKGAQGAP 681 P+ G +GAQG P Sbjct: 419 PKNGKQGAQGRP 430
>P69731:GAG_EIAVC Gag polyprotein [Contains: Matrix protein p15 - Equine infectious| anemia virus (isolate CL22) (EIAV) Length = 486 Score = 43.9 bits (102), Expect(2) = 6e-04 Identities = 17/49 (34%), Positives = 26/49 (53%) Frame = +3 Query: 393 PPPGSGRCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDCQNSPKN 539 P + C+NCG GH + C+A C++C GH + C++ PKN Sbjct: 376 PLKAAQTCYNCGKPGHLSSQCRA---PKVCFKCKQPGHFSKQCRSVPKN 421 Score = 20.4 bits (41), Expect(2) = 6e-04 Identities = 7/12 (58%), Positives = 9/12 (75%) Frame = +1 Query: 646 PQGGMKGAQGAP 681 P+ G +GAQG P Sbjct: 419 PKNGKQGAQGRP 430
>P69730:GAG_EIAV9 Gag polyprotein [Contains: Matrix protein p15 - Equine infectious| anemia virus (isolate 1369) (EIAV) Length = 486 Score = 43.9 bits (102), Expect(2) = 6e-04 Identities = 17/49 (34%), Positives = 26/49 (53%) Frame = +3 Query: 393 PPPGSGRCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDCQNSPKN 539 P + C+NCG GH + C+A C++C GH + C++ PKN Sbjct: 376 PLKAAQTCYNCGKPGHLSSQCRA---PKVCFKCKQPGHFSKQCRSVPKN 421 Score = 20.4 bits (41), Expect(2) = 6e-04 Identities = 7/12 (58%), Positives = 9/12 (75%) Frame = +1 Query: 646 PQGGMKGAQGAP 681 P+ G +GAQG P Sbjct: 419 PKNGKQGAQGRP 430
>Q5RC41:RBM14_PONPY RNA-binding protein 14 - Pongo pygmaeus (Orangutan)| Length = 669 Score = 44.7 bits (104), Expect = 8e-04 Identities = 22/68 (32%), Positives = 38/68 (55%) Frame = +3 Query: 108 RLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHEFAFVEFSDPRDADEARYNLDGRDFDG 287 +++VG + + +++L LF R GRV D+ ++AFV DA A L+G++ G Sbjct: 80 KIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGKEVKG 139 Query: 288 SRMIVEFA 311 R+ VE + Sbjct: 140 KRINVELS 147
>Q8C2Q3:RBM14_MOUSE RNA-binding protein 14 - Mus musculus (Mouse)| Length = 669 Score = 44.7 bits (104), Expect = 8e-04 Identities = 22/68 (32%), Positives = 38/68 (55%) Frame = +3 Query: 108 RLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHEFAFVEFSDPRDADEARYNLDGRDFDG 287 +++VG + + +++L LF R GRV D+ ++AFV DA A L+G++ G Sbjct: 80 KIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGKEVKG 139 Query: 288 SRMIVEFA 311 R+ VE + Sbjct: 140 KRINVELS 147
>Q96PK6:RBM14_HUMAN RNA-binding protein 14 - Homo sapiens (Human)| Length = 669 Score = 44.7 bits (104), Expect = 8e-04 Identities = 22/68 (32%), Positives = 38/68 (55%) Frame = +3 Query: 108 RLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHEFAFVEFSDPRDADEARYNLDGRDFDG 287 +++VG + + +++L LF R GRV D+ ++AFV DA A L+G++ G Sbjct: 80 KIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGKEVKG 139 Query: 288 SRMIVEFA 311 R+ VE + Sbjct: 140 KRINVELS 147
>Q5EA36:RBM14_BOVIN RNA-binding protein 14 - Bos taurus (Bovine)| Length = 669 Score = 44.7 bits (104), Expect = 8e-04 Identities = 22/68 (32%), Positives = 38/68 (55%) Frame = +3 Query: 108 RLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHEFAFVEFSDPRDADEARYNLDGRDFDG 287 +++VG + + +++L LF R GRV D+ ++AFV DA A L+G++ G Sbjct: 80 KIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGKEVKG 139 Query: 288 SRMIVEFA 311 R+ VE + Sbjct: 140 KRINVELS 147
>P18042:POL_HV2G1 Gag-Pol polyprotein - Human immunodeficiency virus type 2 (isolate| Ghana-1 subtype A) (HIV-2) Length = 1464 Score = 44.7 bits (104), Expect = 8e-04 Identities = 17/37 (45%), Positives = 25/37 (67%) Frame = +3 Query: 411 RCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDC 521 RC+NCG +GH AR C+A + C++CG +GH+ C Sbjct: 391 RCWNCGKEGHSARQCRA-PRRQGCWKCGKTGHVMAKC 426
>P27972:GAG_SIVV1 Gag polyprotein [Contains: Core protein p17; Core protein p24; Core| protein p15] - Simian immunodeficiency virus agm.vervet (isolate AGM155) (SIV-agm.ver) (Simian immunodeficiency virus African green monkey vervet) Length = 520 Score = 44.7 bits (104), Expect = 8e-04 Identities = 19/44 (43%), Positives = 26/44 (59%) Frame = +3 Query: 393 PPPGSGRCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDCQ 524 PPP +C+NCG GH R C K +C +CG GH+ +DC+ Sbjct: 396 PPP---KCYNCGKFGHMQRQCPEPR-KIKCLKCGKPGHLAKDCR 435
>P16900:GAG_OMVVS Gag polyprotein [Contains: Core protein p16; Core protein p25; Core| protein p14] - Ovine maedi visna related virus (strain South Africa) (SA-OMVV) (Ovine lentivirus) Length = 446 Score = 44.7 bits (104), Expect = 8e-04 Identities = 18/46 (39%), Positives = 26/46 (56%) Frame = +3 Query: 402 GSGRCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDCQNSPKN 539 G +C+ CG GH AR C+ G C+ CG GH+++DC+ N Sbjct: 382 GVQKCYYCGKPGHLARQCRQG---IICHHCGKRGHMQKDCRQKKGN 424
>P18041:GAG_HV2G1 Gag polyprotein - Human immunodeficiency virus type 2 (isolate| Ghana-1 subtype A) (HIV-2) Length = 522 Score = 44.7 bits (104), Expect = 8e-04 Identities = 17/37 (45%), Positives = 25/37 (67%) Frame = +3 Query: 411 RCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDC 521 RC+NCG +GH AR C+A + C++CG +GH+ C Sbjct: 391 RCWNCGKEGHSARQCRA-PRRQGCWKCGKTGHVMAKC 426
>Q8N567:ZCHC9_HUMAN Zinc finger CCHC domain-containing protein 9 - Homo sapiens (Human)| Length = 271 Score = 44.3 bits (103), Expect = 0.001 Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 7/54 (12%) Frame = +3 Query: 402 GSGRCFNCGIDGHWARDCKA------GDWK-NRCYRCGDSGHIERDCQNSPKNL 542 G+G C+ CG H CKA G++ +C+ CG+ GH+ R C ++PK L Sbjct: 153 GTGICYRCGSTEHEITKCKAKVDPALGEFPFAKCFVCGEMGHLSRSCPDNPKGL 206 Score = 31.6 bits (70), Expect = 7.2 Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 5/45 (11%) Frame = +3 Query: 411 RCFNCGIDGHWARDCKAGDWK-----NRCYRCGDSGHIERDCQNS 530 +CF CG GH +R C C CG H+++DC S Sbjct: 185 KCFVCGEMGHLSRSCPDNPKGLYADGGGCKLCGSVEHLKKDCPES 229
>P62997:TRA2B_RAT Splicing factor, arginine/serine-rich 10 - Rattus norvegicus (Rat)| Length = 288 Score = 44.3 bits (103), Expect = 0.001 Identities = 27/78 (34%), Positives = 41/78 (52%), Gaps = 8/78 (10%) Frame = +3 Query: 102 NTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE--------FAFVEFSDPRDADEAR 257 N L V L T RDL ++F +YG + V + ++ FAFV F + DA EA+ Sbjct: 117 NCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAK 176 Query: 258 YNLDGRDFDGSRMIVEFA 311 +G + DG R+ V+F+ Sbjct: 177 ERANGMELDGRRIRVDFS 194
>P62996:TRA2B_MOUSE Splicing factor, arginine/serine-rich 10 - Mus musculus (Mouse)| Length = 288 Score = 44.3 bits (103), Expect = 0.001 Identities = 27/78 (34%), Positives = 41/78 (52%), Gaps = 8/78 (10%) Frame = +3 Query: 102 NTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE--------FAFVEFSDPRDADEAR 257 N L V L T RDL ++F +YG + V + ++ FAFV F + DA EA+ Sbjct: 117 NCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAK 176 Query: 258 YNLDGRDFDGSRMIVEFA 311 +G + DG R+ V+F+ Sbjct: 177 ERANGMELDGRRIRVDFS 194
>P62995:TRA2B_HUMAN Splicing factor, arginine/serine-rich 10 - Homo sapiens (Human)| Length = 288 Score = 44.3 bits (103), Expect = 0.001 Identities = 27/78 (34%), Positives = 41/78 (52%), Gaps = 8/78 (10%) Frame = +3 Query: 102 NTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE--------FAFVEFSDPRDADEAR 257 N L V L T RDL ++F +YG + V + ++ FAFV F + DA EA+ Sbjct: 117 NCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAK 176 Query: 258 YNLDGRDFDGSRMIVEFA 311 +G + DG R+ V+F+ Sbjct: 177 ERANGMELDGRRIRVDFS 194
>Q3ZBT6:TRA2B_BOVIN Splicing factor, arginine/serine-rich 10 - Bos taurus (Bovine)| Length = 288 Score = 44.3 bits (103), Expect = 0.001 Identities = 27/78 (34%), Positives = 41/78 (52%), Gaps = 8/78 (10%) Frame = +3 Query: 102 NTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE--------FAFVEFSDPRDADEAR 257 N L V L T RDL ++F +YG + V + ++ FAFV F + DA EA+ Sbjct: 117 NCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAK 176 Query: 258 YNLDGRDFDGSRMIVEFA 311 +G + DG R+ V+F+ Sbjct: 177 ERANGMELDGRRIRVDFS 194
>P20876:POL_HV2ST Gag-Pol polyprotein - Human immunodeficiency virus type 2 (isolate| ST subtype A) (HIV-2) Length = 1463 Score = 43.9 bits (102), Expect = 0.001 Identities = 17/37 (45%), Positives = 25/37 (67%) Frame = +3 Query: 411 RCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDC 521 +C+NCG +GH AR C+A + C++CG +GHI C Sbjct: 390 KCWNCGKEGHSARQCRA-PRRQGCWKCGKAGHIMAKC 425
>P04584:POL_HV2RO Gag-Pol polyprotein - Human immunodeficiency virus type 2 (isolate| ROD subtype A) (HIV-2) Length = 1464 Score = 43.9 bits (102), Expect = 0.001 Identities = 17/37 (45%), Positives = 25/37 (67%) Frame = +3 Query: 411 RCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDC 521 +C+NCG +GH AR C+A + C++CG GHI +C Sbjct: 390 KCWNCGKEGHSARQCRA-PRRQGCWKCGKPGHIMTNC 425
>P15833:POL_HV2D2 Gag-Pol polyprotein - Human immunodeficiency virus type 2 (isolate| D205 subtype B) (HIV-2) Length = 1465 Score = 43.9 bits (102), Expect = 0.001 Identities = 18/40 (45%), Positives = 25/40 (62%) Frame = +3 Query: 402 GSGRCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDC 521 G+ C+NCG GH AR C+A + C++CG +GHI C Sbjct: 386 GTVTCWNCGKQGHTARQCRA-PRRQGCWKCGKTGHIMSKC 424
>P24107:POL_HV2CA Gag-Pol polyprotein - Human immunodeficiency virus type 2 (isolate| CAM2 subtype A) (HIV-2) Length = 1462 Score = 43.9 bits (102), Expect = 0.001 Identities = 17/37 (45%), Positives = 25/37 (67%) Frame = +3 Query: 411 RCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDC 521 +C+NCG +GH AR C+A + C++CG GHI +C Sbjct: 390 KCWNCGKEGHSARQCRA-PRRQGCWKCGKPGHIMTNC 425
>P05892:GAG_SIVVT Gag polyprotein [Contains: Core protein p17; Core protein p24; Core| protein p15] - Simian immunodeficiency virus agm.vervet (isolate AGM TYO-1) (SIV-agm.ver) (Simian immunodeficiency virus African green monkey vervet) Length = 519 Score = 43.9 bits (102), Expect = 0.001 Identities = 17/38 (44%), Positives = 23/38 (60%) Frame = +3 Query: 411 RCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDCQ 524 RC+NCG GH R C K +C +CG GH+ +DC+ Sbjct: 398 RCYNCGKFGHMQRQCPEPR-KTKCLKCGKLGHLAKDCR 434
>P20874:GAG_HV2ST Gag polyprotein - Human immunodeficiency virus type 2 (isolate ST| subtype A) (HIV-2) Length = 521 Score = 43.9 bits (102), Expect = 0.001 Identities = 17/37 (45%), Positives = 25/37 (67%) Frame = +3 Query: 411 RCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDC 521 +C+NCG +GH AR C+A + C++CG +GHI C Sbjct: 390 KCWNCGKEGHSARQCRA-PRRQGCWKCGKAGHIMAKC 425
>P04590:GAG_HV2RO Gag polyprotein - Human immunodeficiency virus type 2 (isolate ROD| subtype A) (HIV-2) Length = 522 Score = 43.9 bits (102), Expect = 0.001 Identities = 17/37 (45%), Positives = 25/37 (67%) Frame = +3 Query: 411 RCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDC 521 +C+NCG +GH AR C+A + C++CG GHI +C Sbjct: 390 KCWNCGKEGHSARQCRA-PRRQGCWKCGKPGHIMTNC 425
>P15832:GAG_HV2D2 Gag polyprotein - Human immunodeficiency virus type 2 (isolate D205| subtype B) (HIV-2) Length = 521 Score = 43.9 bits (102), Expect = 0.001 Identities = 18/40 (45%), Positives = 25/40 (62%) Frame = +3 Query: 402 GSGRCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDC 521 G+ C+NCG GH AR C+A + C++CG +GHI C Sbjct: 386 GTVTCWNCGKQGHTARQCRA-PRRQGCWKCGKTGHIMSKC 424
>P24106:GAG_HV2CA Gag polyprotein - Human immunodeficiency virus type 2 (isolate CAM2| subtype A) (HIV-2) Length = 521 Score = 43.9 bits (102), Expect = 0.001 Identities = 17/37 (45%), Positives = 25/37 (67%) Frame = +3 Query: 411 RCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDC 521 +C+NCG +GH AR C+A + C++CG GHI +C Sbjct: 390 KCWNCGKEGHSARQCRA-PRRQGCWKCGKPGHIMTNC 425
>P03344:GAG_BLVJ Gag polyprotein [Contains: Core protein p15 - Bovine leukemia virus| (isolate Japanese BLV-1) (BLV) Length = 392 Score = 43.9 bits (102), Expect = 0.001 Identities = 21/46 (45%), Positives = 24/46 (52%), Gaps = 3/46 (6%) Frame = +3 Query: 393 PPPGSGRCFNCGIDGHWARDC---KAGDWKNRCYRCGDSGHIERDC 521 PPPG C+ C +GHWARDC G C C D H +RDC Sbjct: 342 PPPGP--CYRCLKEGHWARDCPTKATGPPPGPCPICKDPSHWKRDC 385
>P25058:GAG_BLVAU Gag polyprotein [Contains: Core protein p15 - Bovine leukemia virus| (isolate Australian) (BLV) Length = 392 Score = 43.9 bits (102), Expect = 0.001 Identities = 21/46 (45%), Positives = 24/46 (52%), Gaps = 3/46 (6%) Frame = +3 Query: 393 PPPGSGRCFNCGIDGHWARDC---KAGDWKNRCYRCGDSGHIERDC 521 PPPG C+ C +GHWARDC G C C D H +RDC Sbjct: 342 PPPGP--CYRCLKEGHWARDCPTKTTGPPPGPCPICKDPSHWKRDC 385
>Q10572:FOX1_CAEEL Sex determination protein fox-1 - Caenorhabditis elegans| Length = 415 Score = 43.9 bits (102), Expect = 0.001 Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 6/77 (7%) Frame = +3 Query: 99 GNTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDM------KHEFAFVEFSDPRDADEARY 260 G RL+V +P R R DL+ +F ++G V V++ F FV P+DA+ AR Sbjct: 151 GPKRLHVSNIPFRFRDPDLKTMFEKFGVVSDVEIIFNERGSKGFGFVTMERPQDAERARQ 210 Query: 261 NLDGRDFDGSRMIVEFA 311 L G +G ++ V A Sbjct: 211 ELHGSMIEGRKIEVNCA 227
>P27978:GAG_SIVVG Gag polyprotein [Contains: Core protein p17; Core protein p24; Core| protein p15] - Simian immunodeficiency virus agm.vervet (isolate AGM3) (SIV-agm.ver) (Simian immunodeficiency virus African green monkey vervet) Length = 521 Score = 43.5 bits (101), Expect = 0.002 Identities = 17/38 (44%), Positives = 23/38 (60%) Frame = +3 Query: 411 RCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDCQ 524 +C+NCG GH R C K RC +CG GH+ +DC+ Sbjct: 403 KCYNCGKFGHMQRQCPEPR-KMRCLKCGKPGHLAKDCR 439
>P19504:GAG_SIVSP Gag polyprotein [Contains: Core protein p17; Core protein p24] -| Simian immunodeficiency virus (isolate PBj14/BCL-3) (SIV-sm) (Simian immunodeficiency virus sooty mangabey monkey) Length = 507 Score = 43.5 bits (101), Expect = 0.002 Identities = 16/37 (43%), Positives = 25/37 (67%) Frame = +3 Query: 411 RCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDC 521 +C+NCG +GH AR C+A + C++CG +GH+ C Sbjct: 393 KCWNCGKEGHSARQCRA-PRRQGCWKCGKAGHVMAKC 428
>Q09SZ9:PRO_HTL3P Gag-Pro polyprotein - Human T-cell leukemia virus 3 (strain Pyl43)| (HTLV-3) Length = 584 Score = 43.1 bits (100), Expect = 0.002 Identities = 19/43 (44%), Positives = 23/43 (53%), Gaps = 1/43 (2%) Frame = +3 Query: 396 PPGSGRCFNCGIDGHWARDCK-AGDWKNRCYRCGDSGHIERDC 521 PP + CF CG GHW+RDCK C C D H ++DC Sbjct: 345 PPPNQPCFRCGQAGHWSRDCKQPRPPPGPCPLCQDPAHWKQDC 387
>Q0R5R3:PRO_HTL32 Gag-Pro polyprotein - Human T-cell leukemia virus 3 (strain 2026ND)| (HTLV-3) Length = 584 Score = 43.1 bits (100), Expect = 0.002 Identities = 20/43 (46%), Positives = 23/43 (53%), Gaps = 1/43 (2%) Frame = +3 Query: 396 PPGSGRCFNCGIDGHWARDCK-AGDWKNRCYRCGDSGHIERDC 521 PP + CF CG GHW+RDCK C C D H +RDC Sbjct: 345 PPPNQPCFRCGQVGHWSRDCKQPRPPPGPCPVCQDPTHWKRDC 387
>Q89928:POL_HV2EH Gag-Pol polyprotein - Human immunodeficiency virus type 2 (isolate| EHO subtype B) (HIV-2) Length = 1464 Score = 43.1 bits (100), Expect = 0.002 Identities = 18/36 (50%), Positives = 22/36 (61%) Frame = +3 Query: 414 CFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDC 521 C+NCG GH AR CKA + C++CG GHI C Sbjct: 389 CWNCGKAGHTARQCKA-PRRQGCWKCGQQGHIMSKC 423
>Q4U0X6:POL_HTL3P Gag-Pro-Pol polyprotein - Human T-cell leukemia virus 3 (strain| Pyl43) (HTLV-3) Length = 1440 Score = 43.1 bits (100), Expect = 0.002 Identities = 19/43 (44%), Positives = 23/43 (53%), Gaps = 1/43 (2%) Frame = +3 Query: 396 PPGSGRCFNCGIDGHWARDCK-AGDWKNRCYRCGDSGHIERDC 521 PP + CF CG GHW+RDCK C C D H ++DC Sbjct: 345 PPPNQPCFRCGQAGHWSRDCKQPRPPPGPCPLCQDPAHWKQDC 387
>Q0R5R2:POL_HTL32 Gag-Pro-Pol polyprotein - Human T-cell leukemia virus 3 (strain| 2026ND) (HTLV-3) Length = 1440 Score = 43.1 bits (100), Expect = 0.002 Identities = 20/43 (46%), Positives = 23/43 (53%), Gaps = 1/43 (2%) Frame = +3 Query: 396 PPGSGRCFNCGIDGHWARDCK-AGDWKNRCYRCGDSGHIERDC 521 PP + CF CG GHW+RDCK C C D H +RDC Sbjct: 345 PPPNQPCFRCGQVGHWSRDCKQPRPPPGPCPVCQDPTHWKRDC 387
>Q4WJT7:MRD1_ASPFU Multiple RNA-binding domain-containing protein 1 - Aspergillus| fumigatus (Sartorya fumigata) Length = 825 Score = 43.1 bits (100), Expect = 0.002 Identities = 22/73 (30%), Positives = 39/73 (53%), Gaps = 8/73 (10%) Frame = +3 Query: 102 NTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE--------FAFVEFSDPRDADEAR 257 ++RL+V LP DLE +F ++G++ + + + FA+V++ +P A +A Sbjct: 300 SSRLFVRNLPYDASESDLEPVFSKFGKIEEIHVAFDTRSTTSKGFAYVQYIEPDAAVQAY 359 Query: 258 YNLDGRDFDGSRM 296 LDG+ F G M Sbjct: 360 KELDGKHFQGRLM 372 Score = 43.1 bits (100), Expect = 0.002 Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 7/76 (9%) Frame = +3 Query: 105 TRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE-------FAFVEFSDPRDADEARYN 263 T++ + LP + +D+ LFG YG++R V + + F F +F R+A+ A Sbjct: 702 TKIIIKNLPFQATKKDVRSLFGAYGQLRSVRVPKKFDRSARGFGFADFVSAREAENAMDA 761 Query: 264 LDGRDFDGSRMIVEFA 311 L G R+++EFA Sbjct: 762 LKNTHLLGRRLVLEFA 777 Score = 32.7 bits (73), Expect = 3.2 Identities = 24/78 (30%), Positives = 35/78 (44%), Gaps = 2/78 (2%) Frame = +3 Query: 84 RDRYGGNTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDM--KHEFAFVEFSDPRDADEAR 257 + R GNT + V + DL LF YG++ + M A VEF+ P +A +A Sbjct: 477 KQRERGNTAILVKNFSYGVKVDDLRKLFEPYGQITRLLMPPSGTIAIVEFARPDEAQKAF 536 Query: 258 YNLDGRDFDGSRMIVEFA 311 L R S + +E A Sbjct: 537 KGLAYRKVGDSILFLEKA 554
>Q74230:GAG_HV2EH Gag polyprotein - Human immunodeficiency virus type 2 (isolate EHO| subtype B) (HIV-2) Length = 519 Score = 43.1 bits (100), Expect = 0.002 Identities = 18/36 (50%), Positives = 22/36 (61%) Frame = +3 Query: 414 CFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDC 521 C+NCG GH AR CKA + C++CG GHI C Sbjct: 389 CWNCGKAGHTARQCKA-PRRQGCWKCGQQGHIMSKC 423
>Q09T00:GAG_HTL3P Gag polyprotein - Human T-cell leukemia virus 3 (strain Pyl43)| (HTLV-3) Length = 422 Score = 43.1 bits (100), Expect = 0.002 Identities = 19/43 (44%), Positives = 23/43 (53%), Gaps = 1/43 (2%) Frame = +3 Query: 396 PPGSGRCFNCGIDGHWARDCK-AGDWKNRCYRCGDSGHIERDC 521 PP + CF CG GHW+RDCK C C D H ++DC Sbjct: 345 PPPNQPCFRCGQAGHWSRDCKQPRPPPGPCPLCQDPAHWKQDC 387
>Q0R5R4:GAG_HTL32 Gag polyprotein - Human T-cell leukemia virus 3 (strain 2026ND)| (HTLV-3) Length = 422 Score = 43.1 bits (100), Expect = 0.002 Identities = 20/43 (46%), Positives = 23/43 (53%), Gaps = 1/43 (2%) Frame = +3 Query: 396 PPGSGRCFNCGIDGHWARDCK-AGDWKNRCYRCGDSGHIERDC 521 PP + CF CG GHW+RDCK C C D H +RDC Sbjct: 345 PPPNQPCFRCGQVGHWSRDCKQPRPPPGPCPVCQDPTHWKRDC 387
>Q15414:RBY1A_HUMAN RNA-binding motif protein, Y chromosome, family 1 member A1 - Homo| sapiens (Human) Length = 496 Score = 42.7 bits (99), Expect = 0.003 Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 7/76 (9%) Frame = +3 Query: 108 RLYVGRLPSRTRTRDLEDLFGRYGRVRHV-------DMKHEFAFVEFSDPRDADEARYNL 266 +L++G L T + L+ +FG++G + V FAF+ F +P DA A ++ Sbjct: 9 KLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDM 68 Query: 267 DGRDFDGSRMIVEFAK 314 +G+ G + VE AK Sbjct: 69 NGKSLHGKAIKVEQAK 84
>P03353:PRO_HTLV2 Gag-Pro polyprotein - Human T-cell leukemia virus 2 (HTLV-2)| Length = 602 Score = 42.7 bits (99), Expect = 0.003 Identities = 19/43 (44%), Positives = 23/43 (53%), Gaps = 1/43 (2%) Frame = +3 Query: 396 PPGSGRCFNCGIDGHWARDC-KAGDWKNRCYRCGDSGHIERDC 521 PP + CF CG GHW+RDC + C C D H +RDC Sbjct: 357 PPPTQPCFRCGKVGHWSRDCTQPRPPPGPCPLCQDPSHWKRDC 399
>P0C1I6:PPIL4_RHIOR Peptidyl-prolyl cis-trans isomerase-like 4 - Rhizopus oryzae| (Rhizopus delemar) Length = 446 Score = 42.7 bits (99), Expect = 0.003 Identities = 24/76 (31%), Positives = 41/76 (53%), Gaps = 8/76 (10%) Frame = +3 Query: 111 LYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE--------FAFVEFSDPRDADEARYNL 266 L+V +L TR DLE +F R+G + ++ + +AFVEF + DA+EA + + Sbjct: 244 LFVCKLNPVTRDEDLEMIFSRFGLIHSCEIIRDRQTGDSLSYAFVEFENKEDAEEAYFKM 303 Query: 267 DGRDFDGSRMIVEFAK 314 D R+ V+F++ Sbjct: 304 QSVLIDDRRIHVDFSQ 319
>P03363:POL_HTLV2 Gag-Pro-Pol polyprotein - Human T-cell leukemia virus 2 (HTLV-2)| Length = 1461 Score = 42.7 bits (99), Expect = 0.003 Identities = 19/43 (44%), Positives = 23/43 (53%), Gaps = 1/43 (2%) Frame = +3 Query: 396 PPGSGRCFNCGIDGHWARDC-KAGDWKNRCYRCGDSGHIERDC 521 PP + CF CG GHW+RDC + C C D H +RDC Sbjct: 357 PPPTQPCFRCGKVGHWSRDCTQPRPPPGPCPLCQDPSHWKRDC 399
>Q9GRX4:NONA_DROLR Protein no-on-transient A - Drosophila littoralis (Fruit fly)| Length = 698 Score = 42.7 bits (99), Expect = 0.003 Identities = 27/99 (27%), Positives = 50/99 (50%), Gaps = 4/99 (4%) Frame = +3 Query: 27 AARVSSASLSQCRMPRYD--ERDRYGGNTRLYVGRLPSRTRTRDLEDLFGRYGRVRHV-- 194 A R+ S S +P + + ++ G RLYVG L + +L ++F YG + + Sbjct: 253 AQRLRSISGPTHELPPIEVAQETKFSGRNRLYVGNLTNDITDEELREMFKPYGEIGEIFS 312 Query: 195 DMKHEFAFVEFSDPRDADEARYNLDGRDFDGSRMIVEFA 311 +++ F F++ +A++A+ LDG G ++ V FA Sbjct: 313 NLEKNFTFLKVDYHINAEKAKRALDGSMRKGRQLRVRFA 351
>P05893:GAG_SIVMK Gag polyprotein [Contains: Core protein p17; Core protein p24] -| Simian immunodeficiency virus (isolate K6W) (SIV-mac) (Simian immunodeficiency virus rhesus monkey) Length = 506 Score = 42.7 bits (99), Expect = 0.003 Identities = 16/37 (43%), Positives = 24/37 (64%) Frame = +3 Query: 411 RCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDC 521 +C+NCG +GH AR C+A + RC++CG H+ C Sbjct: 392 KCWNCGKEGHSARQCRA-PRRQRCWKCGKMDHVMAKC 427
>P03346:GAG_HTLV2 Gag polyprotein - Human T-cell leukemia virus 2 (HTLV-2)| Length = 433 Score = 42.7 bits (99), Expect = 0.003 Identities = 19/43 (44%), Positives = 23/43 (53%), Gaps = 1/43 (2%) Frame = +3 Query: 396 PPGSGRCFNCGIDGHWARDC-KAGDWKNRCYRCGDSGHIERDC 521 PP + CF CG GHW+RDC + C C D H +RDC Sbjct: 357 PPPTQPCFRCGKVGHWSRDCTQPRPPPGPCPLCQDPSHWKRDC 399
>P28644:ROC1_SPIOL 28 kDa ribonucleoprotein, chloroplast - Spinacia oleracea (Spinach)| Length = 233 Score = 42.4 bits (98), Expect = 0.004 Identities = 28/90 (31%), Positives = 39/90 (43%), Gaps = 8/90 (8%) Frame = +3 Query: 69 PRYDERDRYGGNTRLYVGRLPSRTRTRDLEDLFGRYGRV--------RHVDMKHEFAFVE 224 P R + + R+YVG LP T LE LF +G+V R F FV Sbjct: 137 PERAPRGDFEPSCRVYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVT 196 Query: 225 FSDPRDADEARYNLDGRDFDGSRMIVEFAK 314 S + ++A LDG+ DG + V A+ Sbjct: 197 MSSESEVNDAIAALDGQTLDGRAVRVNVAE 226 Score = 35.4 bits (80), Expect = 0.50 Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 8/76 (10%) Frame = +3 Query: 108 RLYVGRLPSRTRTRDLEDLFGRYGRV--------RHVDMKHEFAFVEFSDPRDADEARYN 263 +L+VG LP + L +F G V R D F FV S +A++A Sbjct: 56 KLFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEL 115 Query: 264 LDGRDFDGSRMIVEFA 311 L+G D DG ++ V A Sbjct: 116 LNGYDMDGRQLTVNKA 131
>P0C210:PRO_HTL1L Gag-Pro polyprotein - Human T-cell leukemia virus 1 (isolate| Melanesia mel5 subtype C) (HTLV-1) Length = 651 Score = 42.4 bits (98), Expect = 0.004 Identities = 19/43 (44%), Positives = 23/43 (53%), Gaps = 1/43 (2%) Frame = +3 Query: 396 PPGSGRCFNCGIDGHWARDC-KAGDWKNRCYRCGDSGHIERDC 521 PP + CF CG GHW+RDC + C C D H +RDC Sbjct: 351 PPPNQPCFRCGKAGHWSRDCAQPRPPPGPCPLCQDPTHWKRDC 393
>P14074:PRO_HTL1C Gag-Pro polyprotein - Human T-cell leukemia virus 1 (isolate| Caribbea HS-35 subtype A) (HTLV-1) Length = 651 Score = 42.4 bits (98), Expect = 0.004 Identities = 19/43 (44%), Positives = 23/43 (53%), Gaps = 1/43 (2%) Frame = +3 Query: 396 PPGSGRCFNCGIDGHWARDC-KAGDWKNRCYRCGDSGHIERDC 521 PP + CF CG GHW+RDC + C C D H +RDC Sbjct: 351 PPPNQPCFRCGKAGHWSRDCTQPRPPPGPCPLCQDPTHWKRDC 393
>P10274:PRO_HTL1A Gag-Pro polyprotein - Human T-cell leukemia virus 1 (strain Japan| ATK-1 subtype A) (HTLV-1) Length = 651 Score = 42.4 bits (98), Expect = 0.004 Identities = 19/43 (44%), Positives = 23/43 (53%), Gaps = 1/43 (2%) Frame = +3 Query: 396 PPGSGRCFNCGIDGHWARDC-KAGDWKNRCYRCGDSGHIERDC 521 PP + CF CG GHW+RDC + C C D H +RDC Sbjct: 351 PPPNQPCFRCGKAGHWSRDCTQPRPPPGPCPLCQDPTHWKRDC 393
>P0C211:POL_HTL1L Gag-Pro-Pol polyprotein - Human T-cell leukemia virus 1 (isolate| Melanesia mel5 subtype C) (HTLV-1) Length = 1462 Score = 42.4 bits (98), Expect = 0.004 Identities = 19/43 (44%), Positives = 23/43 (53%), Gaps = 1/43 (2%) Frame = +3 Query: 396 PPGSGRCFNCGIDGHWARDC-KAGDWKNRCYRCGDSGHIERDC 521 PP + CF CG GHW+RDC + C C D H +RDC Sbjct: 351 PPPNQPCFRCGKAGHWSRDCAQPRPPPGPCPLCQDPTHWKRDC 393
>P14078:POL_HTL1C Gag-Pro-Pol polyprotein - Human T-cell leukemia virus 1 (isolate| Caribbea HS-35 subtype A) (HTLV-1) Length = 1462 Score = 42.4 bits (98), Expect = 0.004 Identities = 19/43 (44%), Positives = 23/43 (53%), Gaps = 1/43 (2%) Frame = +3 Query: 396 PPGSGRCFNCGIDGHWARDC-KAGDWKNRCYRCGDSGHIERDC 521 PP + CF CG GHW+RDC + C C D H +RDC Sbjct: 351 PPPNQPCFRCGKAGHWSRDCTQPRPPPGPCPLCQDPTHWKRDC 393
>P03362:POL_HTL1A Gag-Pro-Pol polyprotein - Human T-cell leukemia virus 1 (strain| Japan ATK-1 subtype A) (HTLV-1) Length = 1462 Score = 42.4 bits (98), Expect = 0.004 Identities = 19/43 (44%), Positives = 23/43 (53%), Gaps = 1/43 (2%) Frame = +3 Query: 396 PPGSGRCFNCGIDGHWARDC-KAGDWKNRCYRCGDSGHIERDC 521 PP + CF CG GHW+RDC + C C D H +RDC Sbjct: 351 PPPNQPCFRCGKAGHWSRDCTQPRPPPGPCPLCQDPTHWKRDC 393
>P12496:GAG_SIVS4 Gag polyprotein [Contains: Core protein p17; Core protein p24] -| Simian immunodeficiency virus (isolate F236/smH4) (SIV-sm) (Simian immunodeficiency virus sooty mangabey monkey) Length = 507 Score = 42.4 bits (98), Expect = 0.004 Identities = 15/37 (40%), Positives = 25/37 (67%) Frame = +3 Query: 411 RCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDC 521 +C+NCG +GH A+ C+A + C++CG +GH+ C Sbjct: 393 KCWNCGKEGHSAKQCRA-PRRQGCWKCGKTGHVMAKC 428
>P14077:GAG_HTL1M Gag polyprotein - Human T-cell leukemia virus 1 (strain Japan MT-2| subtype A) (HTLV-1) Length = 429 Score = 42.4 bits (98), Expect = 0.004 Identities = 19/43 (44%), Positives = 23/43 (53%), Gaps = 1/43 (2%) Frame = +3 Query: 396 PPGSGRCFNCGIDGHWARDC-KAGDWKNRCYRCGDSGHIERDC 521 PP + CF CG GHW+RDC + C C D H +RDC Sbjct: 351 PPPNQPCFRCGKAGHWSRDCTQPRPPPGPCPLCQDPTHWKRDC 393
>P0C209:GAG_HTL1L Gag polyprotein - Human T-cell leukemia virus 1 (isolate Melanesia| mel5 subtype C) (HTLV-1) Length = 429 Score = 42.4 bits (98), Expect = 0.004 Identities = 19/43 (44%), Positives = 23/43 (53%), Gaps = 1/43 (2%) Frame = +3 Query: 396 PPGSGRCFNCGIDGHWARDC-KAGDWKNRCYRCGDSGHIERDC 521 PP + CF CG GHW+RDC + C C D H +RDC Sbjct: 351 PPPNQPCFRCGKAGHWSRDCAQPRPPPGPCPLCQDPTHWKRDC 393
>P14076:GAG_HTL1C Gag polyprotein - Human T-cell leukemia virus 1 (isolate Caribbea| HS-35 subtype A) (HTLV-1) Length = 429 Score = 42.4 bits (98), Expect = 0.004 Identities = 19/43 (44%), Positives = 23/43 (53%), Gaps = 1/43 (2%) Frame = +3 Query: 396 PPGSGRCFNCGIDGHWARDC-KAGDWKNRCYRCGDSGHIERDC 521 PP + CF CG GHW+RDC + C C D H +RDC Sbjct: 351 PPPNQPCFRCGKAGHWSRDCTQPRPPPGPCPLCQDPTHWKRDC 393
>P03345:GAG_HTL1A Gag polyprotein - Human T-cell leukemia virus 1 (strain Japan ATK-1| subtype A) (HTLV-1) Length = 429 Score = 42.4 bits (98), Expect = 0.004 Identities = 19/43 (44%), Positives = 23/43 (53%), Gaps = 1/43 (2%) Frame = +3 Query: 396 PPGSGRCFNCGIDGHWARDC-KAGDWKNRCYRCGDSGHIERDC 521 PP + CF CG GHW+RDC + C C D H +RDC Sbjct: 351 PPPNQPCFRCGKAGHWSRDCTQPRPPPGPCPLCQDPTHWKRDC 393
>Q6PFR5:TRA2A_MOUSE Transformer-2 protein homolog - Mus musculus (Mouse)| Length = 281 Score = 42.0 bits (97), Expect = 0.005 Identities = 27/78 (34%), Positives = 41/78 (52%), Gaps = 8/78 (10%) Frame = +3 Query: 102 NTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE--------FAFVEFSDPRDADEAR 257 NT L V L T RDL ++F RYG + V++ ++ FAFV F D+ EA Sbjct: 116 NTCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAM 175 Query: 258 YNLDGRDFDGSRMIVEFA 311 +G + DG R+ V+++ Sbjct: 176 ERANGMELDGRRIRVDYS 193
>Q13595:TRA2A_HUMAN Transformer-2 protein homolog - Homo sapiens (Human)| Length = 282 Score = 42.0 bits (97), Expect = 0.005 Identities = 27/78 (34%), Positives = 41/78 (52%), Gaps = 8/78 (10%) Frame = +3 Query: 102 NTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE--------FAFVEFSDPRDADEAR 257 NT L V L T RDL ++F RYG + V++ ++ FAFV F D+ EA Sbjct: 118 NTCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAM 177 Query: 258 YNLDGRDFDGSRMIVEFA 311 +G + DG R+ V+++ Sbjct: 178 ERANGMELDGRRIRVDYS 195
>Q44556:RBPD_ANASP Putative RNA-binding protein rbpD - Anabaena sp. (strain PCC 7120)| Length = 94 Score = 42.0 bits (97), Expect = 0.005 Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 8/76 (10%) Frame = +3 Query: 111 LYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE--------FAFVEFSDPRDADEARYNL 266 +YVG L R DL+ +F YG V+ V + + FAFVE ++ D A L Sbjct: 3 IYVGNLSYRATEADLKAVFADYGEVKRVVLPTDRETGRMRGFAFVEMNEDAQEDAAITEL 62 Query: 267 DGRDFDGSRMIVEFAK 314 DG ++ G ++ V AK Sbjct: 63 DGAEWMGRQLRVNKAK 78
>Q9UKM9:RALY_HUMAN RNA-binding protein Raly - Homo sapiens (Human)| Length = 306 Score = 42.0 bits (97), Expect = 0.005 Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 1/71 (1%) Frame = +3 Query: 102 NTRLYVGRLPSR-TRTRDLEDLFGRYGRVRHVDMKHEFAFVEFSDPRDADEARYNLDGRD 278 N+R+++G L + + D+E +F +YGRV + +AFV++S+ R A A +GR Sbjct: 20 NSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSVHKGYAFVQYSNERHARAAVLGENGRV 79 Query: 279 FDGSRMIVEFA 311 G + + A Sbjct: 80 LAGQTLDINMA 90
>Q9UT83:MUG28_SCHPO Meiotically up-regulated gene 28 protein - Schizosaccharomyces| pombe (Fission yeast) Length = 609 Score = 42.0 bits (97), Expect = 0.005 Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 13/79 (16%) Frame = +3 Query: 111 LYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE-------------FAFVEFSDPRDADE 251 +YVG LPS ++ DL +LF +G M FAF+ F + AD Sbjct: 22 IYVGNLPSTCQSSDLHELFEPFGNFSKFHMLSRKKNKSTDSKSPTLFAFITFENKCSADN 81 Query: 252 ARYNLDGRDFDGSRMIVEF 308 A +L+G F G+ + VE+ Sbjct: 82 AIASLNGSSFQGNTLKVEY 100 Score = 37.0 bits (84), Expect = 0.17 Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 8/65 (12%) Frame = +3 Query: 144 TRDLEDLFGRYGRVR--------HVDMKHEFAFVEFSDPRDADEARYNLDGRDFDGSRMI 299 T+ LE+LF ++GR++ ++ + FV FS P +A +A L+G F R+ Sbjct: 434 TQQLEELFSKFGRIKSCTLASYPSTEISKGYGFVSFSHPFEAVQAINTLNGVLFGKKRLF 493 Query: 300 VEFAK 314 V +A+ Sbjct: 494 VNYAE 498 Database: uniprot_sprot.fasta.out Posted date: Jul 19, 2007 5:58 PM Number of letters in database: 100,686,439 Number of sequences in database: 274,295 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 274295 Number of Hits to DB: 181,273,872 Number of extensions: 3819188 Number of successful extensions: 14474 Number of sequences better than 10.0: 535 Number of HSP's gapped: 13918 Number of HSP's successfully gapped: 663 Length of query: 417 Length of database: 100,686,439 Length adjustment: 116 Effective length of query: 301 Effective length of database: 68,868,219 Effective search space: 20729333919 Effective search space used: 20729333919 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
