ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf13m13 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY368673.1| Triticum turgidum HMW-glutenin locus, complete sequence Length = 285506 Score = 93.7 bits (47), Expect = 1e-15 Identities = 69/75 (92%), Gaps = 1/75 (1%) Strand = Plus / Minus Query: 1025 cccctatgcatatattaccccaatgtcaccttag-aatctccgagttgagtgccaaaata 1083 |||||| ||||| |||||||||||||||||| || ||||| ||||||||||||||||| | Sbjct: 200661 cccctacgcatagattaccccaatgtcacctcaggaatctgcgagttgagtgccaaaaca 200602 Query: 1084 tatatcaagtgaatc 1098 ||||||||||||||| Sbjct: 200601 tatatcaagtgaatc 200587 Score = 63.9 bits (32), Expect = 1e-06 Identities = 60/68 (88%), Gaps = 1/68 (1%) Strand = Plus / Minus Query: 947 atgtctattacgaaactttattcttgtagaatcgtgttggg-ctccaagcatagtgtttt 1005 ||||||| |||| ||||||||||||||||| |||||||||| ||||||| || ||||| Sbjct: 81277 atgtctactacgcaactttattcttgtagactcgtgttgggcctccaagtgcagagtttt 81218 Query: 1006 gtaggaca 1013 |||||||| Sbjct: 81217 gtaggaca 81210 Score = 60.0 bits (30), Expect = 2e-05 Identities = 55/62 (88%), Gaps = 1/62 (1%) Strand = Plus / Minus Query: 944 ttgatgtctattacgaaactttattcttgtagaatcgtgttggg-ctccaagcatagtgt 1002 |||||||||| || | ||||||||||||||||| ||||||||| |||||||||||| || Sbjct: 214743 ttgatgtctactatgcaactttattcttgtagacacgtgttgggcctccaagcatagagt 214684 Query: 1003 tt 1004 || Sbjct: 214683 tt 214682
>gb|AY268139.1| Hordeum vulgare BAC 184G9, complete sequece Length = 120562 Score = 61.9 bits (31), Expect = 5e-06 Identities = 65/75 (86%), Gaps = 1/75 (1%) Strand = Plus / Plus Query: 1025 cccctatgcatatattaccccaatgtcaccttagaa-tctccgagttgagtgccaaaata 1083 |||||||||||| ||||||||||| |||||| ||| || | |||||||| ||||||| Sbjct: 86975 cccctatgcatagattaccccaatatcacctcggaaatccactagttgagtaacaaaata 87034 Query: 1084 tatatcaagtgaatc 1098 ||||||||||||||| Sbjct: 87035 tatatcaagtgaatc 87049 Score = 54.0 bits (27), Expect = 0.001 Identities = 62/71 (87%), Gaps = 2/71 (2%) Strand = Plus / Plus Query: 944 ttgatgtctattacgaaactttattcttgtagaatcgtgttggg-ctccaagcatagtgt 1002 |||||||||| ||| ||||||||||||||||| || | ||||| ||||||||| || || Sbjct: 77478 ttgatgtctactacacaactttattcttgtagactc-tcttgggcctccaagcacagagt 77536 Query: 1003 tttgtaggaca 1013 ||||||||||| Sbjct: 77537 tttgtaggaca 77547
>gb|AF459639.1| Triticum monococcum BAC clones 116F2 and 115G1 gene sequence Length = 215241 Score = 61.9 bits (31), Expect = 5e-06 Identities = 59/67 (88%), Gaps = 1/67 (1%) Strand = Plus / Minus Query: 944 ttgatgtctattacgaaactttattcttgtagaatcgtgttggg-ctccaagcatagtgt 1002 |||||||||| |||| ||||||||||||||||| ||||||||| |||||||| || || Sbjct: 171064 ttgatgtctactacgcaactttattcttgtagacacgtgttgggcctccaagcgcagagt 171005 Query: 1003 tttgtag 1009 ||||||| Sbjct: 171004 tttgtag 170998 Score = 50.1 bits (25), Expect = 0.017 Identities = 40/45 (88%) Strand = Plus / Minus Query: 944 ttgatgtctattacgaaactttattcttgtagaatcgtgttgggc 988 ||||||| || |||| ||||||||||||||||| |||||||||| Sbjct: 121752 ttgatgtatactacgcaactttattcttgtagacacgtgttgggc 121708 Score = 44.1 bits (22), Expect = 1.1 Identities = 28/30 (93%) Strand = Plus / Minus Query: 1025 cccctatgcatatattaccccaatgtcacc 1054 |||||||||||| ||||||||||| ||||| Sbjct: 121034 cccctatgcatagattaccccaatatcacc 121005
>gb|U51305.1|TAU51305 Triticum aestivum alpha-gliadin storage protein pseudogene, complete cds Length = 3534 Score = 58.0 bits (29), Expect = 7e-05 Identities = 60/69 (86%), Gaps = 1/69 (1%) Strand = Plus / Plus Query: 944 ttgatgtctattacgaaactttattcttgtagaatcgtgttggg-ctccaagcatagtgt 1002 |||||||||| |||| |||||||||||| |||| ||||||||| |||||||| || || Sbjct: 3010 ttgatgtctactacgcaactttattcttatagacacgtgttgggcctccaagcgcagagt 3069 Query: 1003 tttgtagga 1011 ||||||||| Sbjct: 3070 tttgtagga 3078
>gb|AC104095.4| Mus musculus BAC clone RP23-403G12 from chromosome 19, complete sequence Length = 187859 Score = 56.0 bits (28), Expect = 3e-04 Identities = 34/36 (94%) Strand = Plus / Minus Query: 278 cagcactgccggactccatgagccaacatgacaacc 313 |||||||||||||| |||||||||||||| |||||| Sbjct: 1026 cagcactgccggacaccatgagccaacatcacaacc 991
>gb|AC151575.1| Mus musculus BAC clone RP24-126E1 from 19, complete sequence Length = 200563 Score = 56.0 bits (28), Expect = 3e-04 Identities = 34/36 (94%) Strand = Plus / Plus Query: 278 cagcactgccggactccatgagccaacatgacaacc 313 |||||||||||||| |||||||||||||| |||||| Sbjct: 89303 cagcactgccggacaccatgagccaacatcacaacc 89338
>gb|DQ537336.1| Triticum aestivum clones BAC 1289J04; BAC 1001P20, complete sequence Length = 206063 Score = 48.1 bits (24), Expect = 0.068 Identities = 58/68 (85%), Gaps = 1/68 (1%) Strand = Plus / Minus Query: 947 atgtctattacgaaactttattcttgtagaatcgtgttggg-ctccaagcatagtgtttt 1005 ||||||| |||| ||||||||||||||||| |||||||| ||||||| || ||||| Sbjct: 98237 atgtctactacgcaactttattcttgtagacaagtgttgggcctccaagtgcagagtttt 98178 Query: 1006 gtaggaca 1013 |||||||| Sbjct: 98177 gtaggaca 98170
>gb|AC188170.3| Pan troglodytes BAC clone CH251-584H12 from chromosome 7, complete sequence Length = 220934 Score = 44.1 bits (22), Expect = 1.1 Identities = 22/22 (100%) Strand = Plus / Minus Query: 87 caaaataaaattctccatcctt 108 |||||||||||||||||||||| Sbjct: 71615 caaaataaaattctccatcctt 71594
>emb|CT025705.11| Pig DNA sequence from clone CH242-277H17 on chromosome 3, complete sequence Length = 181740 Score = 44.1 bits (22), Expect = 1.1 Identities = 22/22 (100%) Strand = Plus / Plus Query: 76 aagaagagaggcaaaataaaat 97 |||||||||||||||||||||| Sbjct: 164544 aagaagagaggcaaaataaaat 164565
>gb|AC073270.6| Homo sapiens BAC clone RP11-468B6 from 7, complete sequence Length = 188679 Score = 44.1 bits (22), Expect = 1.1 Identities = 22/22 (100%) Strand = Plus / Minus Query: 87 caaaataaaattctccatcctt 108 |||||||||||||||||||||| Sbjct: 34360 caaaataaaattctccatcctt 34339
>gb|AC005042.2| Homo sapiens BAC clone RP11-552E1 from 2, complete sequence Length = 192219 Score = 44.1 bits (22), Expect = 1.1 Identities = 22/22 (100%) Strand = Plus / Plus Query: 590 ggtccagagaggagtcagtcct 611 |||||||||||||||||||||| Sbjct: 104502 ggtccagagaggagtcagtcct 104523
>gb|U83986.1|AVU83986 Agrobacterium vitis plasmid pTiCG474 agrocinopine synthase, (5), and (iaaH) genes, (iaaM) pseudogene, (ipt) and (6b) genes, and (ocs) pseudogene, complete cds Length = 14960 Score = 44.1 bits (22), Expect = 1.1 Identities = 22/22 (100%) Strand = Plus / Minus Query: 119 cgctcgaggaagaagaacaagc 140 |||||||||||||||||||||| Sbjct: 6231 cgctcgaggaagaagaacaagc 6210
>gb|AF048979.1| Rhodococcus sp. IGTS8 NADH-dependent FMN oxydoreductase (dszD) gene, complete cds Length = 955 Score = 42.1 bits (21), Expect = 4.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 859 gtccatgtcgacggcgaggcc 879 ||||||||||||||||||||| Sbjct: 47 gtccatgtcgacggcgaggcc 27
>emb|CR701766.2|CNS0G4FM Tetraodon nigroviridis full-length cDNA Length = 868 Score = 42.1 bits (21), Expect = 4.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 425 gagggcagaggcgcagcgggc 445 ||||||||||||||||||||| Sbjct: 863 gagggcagaggcgcagcgggc 843
>emb|CR692363.2|CNS0FX6F Tetraodon nigroviridis full-length cDNA Length = 859 Score = 42.1 bits (21), Expect = 4.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 425 gagggcagaggcgcagcgggc 445 ||||||||||||||||||||| Sbjct: 854 gagggcagaggcgcagcgggc 834
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8 Length = 28434780 Score = 42.1 bits (21), Expect = 4.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1077 caaaatatatatcaagtgaat 1097 ||||||||||||||||||||| Sbjct: 7736615 caaaatatatatcaagtgaat 7736595
>gb|AC026691.5| Homo sapiens chromosome 5 clone CTC-203F4, complete sequence Length = 135062 Score = 42.1 bits (21), Expect = 4.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1003 tttgtaggacaatataaaatt 1023 ||||||||||||||||||||| Sbjct: 89425 tttgtaggacaatataaaatt 89405
>dbj|BS000014.1| Pan troglodytes chromosome 22 clone:PTB-065D08, map 22, complete sequences Length = 44243 Score = 42.1 bits (21), Expect = 4.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1008 aggacaatataaaatttcccc 1028 ||||||||||||||||||||| Sbjct: 28027 aggacaatataaaatttcccc 28047
>dbj|AP004183.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1221_H04 Length = 129387 Score = 42.1 bits (21), Expect = 4.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1077 caaaatatatatcaagtgaat 1097 ||||||||||||||||||||| Sbjct: 77338 caaaatatatatcaagtgaat 77318
>gb|AF127577.2|AF127577 Homo sapiens clone PAC 270M7 chromosome 21 map 21q11.2, complete sequence Length = 168153 Score = 42.1 bits (21), Expect = 4.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1008 aggacaatataaaatttcccc 1028 ||||||||||||||||||||| Sbjct: 164431 aggacaatataaaatttcccc 164451
>gb|AF222684.1|AF222684 Homo sapiens chromosome 21 BAC B194B7 map 21q11.2, complete sequence Length = 116459 Score = 42.1 bits (21), Expect = 4.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1008 aggacaatataaaatttcccc 1028 ||||||||||||||||||||| Sbjct: 12727 aggacaatataaaatttcccc 12747
>emb|AL163208.2|HS21C008 Homo sapiens chromosome 21 segment HS21C008 Length = 340000 Score = 42.1 bits (21), Expect = 4.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1008 aggacaatataaaatttcccc 1028 ||||||||||||||||||||| Sbjct: 84404 aggacaatataaaatttcccc 84424 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 167,800,415 Number of extensions: 9312506 Number of successful extensions: 152470 Number of sequences better than 10.0: 22 Number of HSP's gapped: 152468 Number of HSP's successfully gapped: 28 Length of query: 1114 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 1091 Effective length of database: 18,503,978,556 Effective search space: 20187840604596 Effective search space used: 20187840604596 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)
