| Clone Name | FLbaf13m06 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_001057462.1| Oryza sativa (japonica cultivar-group) Os03g0685600 (Os03g0685600) mRNA, complete cds Length = 1614 Score = 634 bits (320), Expect = e-178 Identities = 846/1018 (83%), Gaps = 5/1018 (0%) Strand = Plus / Plus Query: 434 tatgcatttcatgggcatacagatgaggtctttgctgctgcatgcagtcctgcagatgca 493 |||||||||| || |||||||| ||| | || |||| |||||||||||| |||||||| Sbjct: 334 tatgcatttcgtgctcatacagacgagatattcgctgtggcatgcagtcctacagatgca 393 Query: 494 tcacttgttgtttcgggaggtaaagatgacagagggtttctttggaggattggggcagca 553 |||||||| | ||| ||||| ||||| || ||||| || || |||| |||||| ||||| Sbjct: 394 tcacttgtggcttctggagggaaagacgatagaggattcctgtggaagattggatcagca 453 Query: 554 caggatgttcaggagctgactggacatggagacacggtgtgcactgtggctttcagttca 613 |||||||| ||||||| | || || ||| || || ||||| || |||||||||||| Sbjct: 454 gaggatgttttggagctggccgggcacacagatactgtctgcacggttgctttcagttca 513 Query: 614 gatgggaatttggtggcttgtggtagtatggatggacagataaatgtatggaatacagct 673 ||||||||| | |||||| ||| ||| | ||||||| |||||||| |||||||||||| Sbjct: 514 gatgggaatcttttggcttctggaagttttgatggacgcataaatgtgtggaatacagct 573 Query: 674 acacggacgcttcagggaacccttgagggttcgtctggatcgggctttgagtggctgaaa 733 ||||| || ||||||||||||||||||||||| |||||| ||||| |||||||| ||| Sbjct: 574 acacgaacacttcagggaacccttgagggttc---tggatctggcttcgagtggcttaaa 630 Query: 734 tggcatccacggggtcacttgataattgcaggatcagaagactgtaatatatggatgtgg 793 ||||||||||| || || ||||||||||||||||||||||| |||||| | ||||||||| Sbjct: 631 tggcatccacgagggcatttgataattgcaggatcagaagattgtaatttgtggatgtgg 690 Query: 794 aatgctgaccacaatgcctttctgaatacatttgctggtcacagtagcacggtgacatgt 853 ||||||||||| |||||| |||||||||| |||||||| || |||||||| ||||||||| Sbjct: 691 aatgctgaccataatgccattctgaatacctttgctggccatagtagcacagtgacatgt 750 Query: 854 ggtgattttacccctgatggtaagcttatatgtagtggatcagatgatgcaacacttagg 913 ||||||||||| || |||||||| ||||| |||| |||||||||||||||| || | || Sbjct: 751 ggtgattttactccagatggtaaacttatctgtactggatcagatgatgcatcattgaga 810 Query: 914 atatgggaccccagaagcgcacaatgcagacatgttgttcggggccatggctatcatact 973 ||||||||||| |||| |||||| |||||||||||||||| ||||||||||||||||| Sbjct: 811 atatgggacccaagaactgcacaaagcagacatgttgttcgaggccatggctatcatacg 870 Query: 974 caaggattgacatgtttagctattactccggactcccagtcaattgttagtggctcggag 1033 | ||||| ||||| ||| | ||||| |||| ||||| ||||||||||||| || || Sbjct: 871 gatggattaacatgcttatcagttacttcggattcccaaacaattgttagtggttcaaag 930 Query: 1034 gataattctgtgcacattgtgagcataaactcaggccaggttgttggttcattagttggc 1093 |||||||||||| |||||| |||||||||||||||||||||||| ||| | | ||| Sbjct: 931 gataattctgtgtgtgttgtgaacataaactcaggccaggttgttggctcactggacggc 990 Query: 1094 cacaccaattccatcgagtgcattggcatctcatcgaggtacaactgggtggctacaggg 1153 ||||| || || ||||| | ||||||||| | || ||||| ||||||||||||||| Sbjct: 991 cacactggctctattgagtgtgtcggcatctcaccaagttacaattgggtggctacaggg 1050 Query: 1154 agcattgat-agaactctcattatctgggaccttgctcgccaagcaattcggtctacttg 1212 ||||| ||| |||| ||||| ||||||||||||| ||||||| | || || | ||||| Sbjct: 1051 agcatggatcagaa-gctcatcatctgggaccttggtcgccaatcgatccgatgcacttg 1109 Query: 1213 cgagcatgatgaaggtgtgacatgcctggcgtggctgggctcgtcgaggtatgtggcgtc 1272 | | || ||||| || ||||||| |||||| ||||||||| |||| |||| |||||||| Sbjct: 1110 caaccacgatgagggggtgacatccctggcatggctgggcccgtccaggttcgtggcgtc 1169 Query: 1273 aggatgcatcgacggcatggtgcgcatctgggacagcctctccggtgacttggcccgcac 1332 || |||||||||||||||||||| |||||||||||||||||||| || | | | | Sbjct: 1170 ggggtgcatcgacggcatggtgcgaatctgggacagcctctccggggagtgcgtgagggc 1229 Query: 1333 cttcagcgggcacagggacgtcgtgcagtcgctggccgtctctgctgacggcaactccat 1392 |||| ||| ||| | |||||||||||||| || |||||||||||||| ||||||||||| Sbjct: 1230 cttcgccggccacggtgacgtcgtgcagtccctcgccgtctctgctgatggcaactccat 1289 Query: 1393 agtctcggtctccacggataaatctgcccgtgtcttcgacatctctatgttcaagtga 1450 ||||| || ||||||||| ||||||| |||||||||| || |||||||||||| Sbjct: 1290 cgtctccgtgtccacggatggctctgccctcatcttcgacatttccatgttcaagtga 1347 Score = 58.0 bits (29), Expect = 1e-04 Identities = 71/85 (83%) Strand = Plus / Plus Query: 284 gaaggctctgacggcgaggaggtcttcattgacgagcaggacatcatccaggagatacat 343 ||||||||||| || |||||||| ||||| | ||| |||||||||| || ||||||| Sbjct: 193 gaaggctctgatggagaggaggtgttcatcaatgaggaggacatcatacacgagataccc 252 Query: 344 cttgatgaggaagatctccctgacc 368 | || ||||||||||||||||||| Sbjct: 253 atcgacgaggaagatctccctgacc 277
>dbj|AK111863.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033024B20, full insert sequence Length = 1615 Score = 634 bits (320), Expect = e-178 Identities = 846/1018 (83%), Gaps = 5/1018 (0%) Strand = Plus / Plus Query: 434 tatgcatttcatgggcatacagatgaggtctttgctgctgcatgcagtcctgcagatgca 493 |||||||||| || |||||||| ||| | || |||| |||||||||||| |||||||| Sbjct: 335 tatgcatttcgtgctcatacagacgagatattcgctgtggcatgcagtcctacagatgca 394 Query: 494 tcacttgttgtttcgggaggtaaagatgacagagggtttctttggaggattggggcagca 553 |||||||| | ||| ||||| ||||| || ||||| || || |||| |||||| ||||| Sbjct: 395 tcacttgtggcttctggagggaaagacgatagaggattcctgtggaagattggatcagca 454 Query: 554 caggatgttcaggagctgactggacatggagacacggtgtgcactgtggctttcagttca 613 |||||||| ||||||| | || || ||| || || ||||| || |||||||||||| Sbjct: 455 gaggatgttttggagctggccgggcacacagatactgtctgcacggttgctttcagttca 514 Query: 614 gatgggaatttggtggcttgtggtagtatggatggacagataaatgtatggaatacagct 673 ||||||||| | |||||| ||| ||| | ||||||| |||||||| |||||||||||| Sbjct: 515 gatgggaatcttttggcttctggaagttttgatggacgcataaatgtgtggaatacagct 574 Query: 674 acacggacgcttcagggaacccttgagggttcgtctggatcgggctttgagtggctgaaa 733 ||||| || ||||||||||||||||||||||| |||||| ||||| |||||||| ||| Sbjct: 575 acacgaacacttcagggaacccttgagggttc---tggatctggcttcgagtggcttaaa 631 Query: 734 tggcatccacggggtcacttgataattgcaggatcagaagactgtaatatatggatgtgg 793 ||||||||||| || || ||||||||||||||||||||||| |||||| | ||||||||| Sbjct: 632 tggcatccacgagggcatttgataattgcaggatcagaagattgtaatttgtggatgtgg 691 Query: 794 aatgctgaccacaatgcctttctgaatacatttgctggtcacagtagcacggtgacatgt 853 ||||||||||| |||||| |||||||||| |||||||| || |||||||| ||||||||| Sbjct: 692 aatgctgaccataatgccattctgaatacctttgctggccatagtagcacagtgacatgt 751 Query: 854 ggtgattttacccctgatggtaagcttatatgtagtggatcagatgatgcaacacttagg 913 ||||||||||| || |||||||| ||||| |||| |||||||||||||||| || | || Sbjct: 752 ggtgattttactccagatggtaaacttatctgtactggatcagatgatgcatcattgaga 811 Query: 914 atatgggaccccagaagcgcacaatgcagacatgttgttcggggccatggctatcatact 973 ||||||||||| |||| |||||| |||||||||||||||| ||||||||||||||||| Sbjct: 812 atatgggacccaagaactgcacaaagcagacatgttgttcgaggccatggctatcatacg 871 Query: 974 caaggattgacatgtttagctattactccggactcccagtcaattgttagtggctcggag 1033 | ||||| ||||| ||| | ||||| |||| ||||| ||||||||||||| || || Sbjct: 872 gatggattaacatgcttatcagttacttcggattcccaaacaattgttagtggttcaaag 931 Query: 1034 gataattctgtgcacattgtgagcataaactcaggccaggttgttggttcattagttggc 1093 |||||||||||| |||||| |||||||||||||||||||||||| ||| | | ||| Sbjct: 932 gataattctgtgtgtgttgtgaacataaactcaggccaggttgttggctcactggacggc 991 Query: 1094 cacaccaattccatcgagtgcattggcatctcatcgaggtacaactgggtggctacaggg 1153 ||||| || || ||||| | ||||||||| | || ||||| ||||||||||||||| Sbjct: 992 cacactggctctattgagtgtgtcggcatctcaccaagttacaattgggtggctacaggg 1051 Query: 1154 agcattgat-agaactctcattatctgggaccttgctcgccaagcaattcggtctacttg 1212 ||||| ||| |||| ||||| ||||||||||||| ||||||| | || || | ||||| Sbjct: 1052 agcatggatcagaa-gctcatcatctgggaccttggtcgccaatcgatccgatgcacttg 1110 Query: 1213 cgagcatgatgaaggtgtgacatgcctggcgtggctgggctcgtcgaggtatgtggcgtc 1272 | | || ||||| || ||||||| |||||| ||||||||| |||| |||| |||||||| Sbjct: 1111 caaccacgatgagggggtgacatccctggcatggctgggcccgtccaggttcgtggcgtc 1170 Query: 1273 aggatgcatcgacggcatggtgcgcatctgggacagcctctccggtgacttggcccgcac 1332 || |||||||||||||||||||| |||||||||||||||||||| || | | | | Sbjct: 1171 ggggtgcatcgacggcatggtgcgaatctgggacagcctctccggggagtgcgtgagggc 1230 Query: 1333 cttcagcgggcacagggacgtcgtgcagtcgctggccgtctctgctgacggcaactccat 1392 |||| ||| ||| | |||||||||||||| || |||||||||||||| ||||||||||| Sbjct: 1231 cttcgccggccacggtgacgtcgtgcagtccctcgccgtctctgctgatggcaactccat 1290 Query: 1393 agtctcggtctccacggataaatctgcccgtgtcttcgacatctctatgttcaagtga 1450 ||||| || ||||||||| ||||||| |||||||||| || |||||||||||| Sbjct: 1291 cgtctccgtgtccacggatggctctgccctcatcttcgacatttccatgttcaagtga 1348 Score = 58.0 bits (29), Expect = 1e-04 Identities = 71/85 (83%) Strand = Plus / Plus Query: 284 gaaggctctgacggcgaggaggtcttcattgacgagcaggacatcatccaggagatacat 343 ||||||||||| || |||||||| ||||| | ||| |||||||||| || ||||||| Sbjct: 194 gaaggctctgatggagaggaggtgttcatcaatgaggaggacatcatacacgagataccc 253 Query: 344 cttgatgaggaagatctccctgacc 368 | || ||||||||||||||||||| Sbjct: 254 atcgacgaggaagatctccctgacc 278
>gb|AY105394.1| Zea mays PCO069801 mRNA sequence Length = 1802 Score = 422 bits (213), Expect = e-114 Identities = 566/683 (82%), Gaps = 3/683 (0%) Strand = Plus / Plus Query: 476 tgcagtcctgcagatgcatcacttgttgtttcgggaggtaaagatgacagagggtttctt 535 ||||||||| ||||| |||||||||| | ||| ||||| |||||||| || || ||||| Sbjct: 584 tgcagtcctacagattcatcacttgtggcttctggaggcaaagatgataggggatttctg 643 Query: 536 tggaggattggggcagcacaggatgttcaggagctgactggacatggagacacggtgtgc 595 ||||||||||| ||| | ||| || | |||||||||||||||| || || || || Sbjct: 644 tggaggattggatcagaagagggtgccctggagctgactggacataaggatactgtcggc 703 Query: 596 actgtggctttcagttcagatgggaatttggtggcttgtggtagtatggatggacagata 655 || |||||||| |||||||||||||||||| |||||||||| ||| | ||||| || ||| Sbjct: 704 acagtggcttttagttcagatgggaatttgttggcttgtggaagttttgatgggcaaata 763 Query: 656 aatgtatggaatacagctacacggacgcttcagggaacccttgagggttcgtctggatcg 715 ||||| |||||||||||| |||| || || ||||||||||||||||||| || || Sbjct: 764 aatgtgtggaatacagctgcacgaactctcaagggaacccttgagggttcc---gggtca 820 Query: 716 ggctttgagtggctgaaatggcatccacggggtcacttgataattgcaggatcagaagac 775 || ||||||||||| ||||||||| | ||||| || |||||||| ||||||||||| || Sbjct: 821 ggttttgagtggcttaaatggcattctcggggacatttgataatcgcaggatcagaggat 880 Query: 776 tgtaatatatggatgtggaatgctgaccacaatgcctttctgaatacatttgctggtcac 835 |||||| |||||||||||||||| ||||| |||||| ||||||||||||||| ||| || Sbjct: 881 tgtaatgtatggatgtggaatgccgaccataatgccattctgaatacatttgttggacat 940 Query: 836 agtagcacggtgacatgtggtgattttacccctgatggtaagcttatatgtagtggatca 895 |||| ||| |||||||||||||||||||| || |||||||| |||||||||| |||||| Sbjct: 941 agtaacacagtgacatgtggtgattttactccagatggtaaacttatatgtactggatcg 1000 Query: 896 gatgatgcaacacttaggatatgggaccccagaagcgcacaatgcagacatgttgttcgg 955 ||||||||| | | |||||||||||||| ||||| |||||| |||||||||||||||| Sbjct: 1001 gatgatgcatctttgaggatatgggacccaagaagtgcacaaagcagacatgttgttcga 1060 Query: 956 ggccatggctatcatactcaaggattgacatgtttagctattactccggactcccagtca 1015 |||||||| ||||||||| | ||||||||||| ||| | || ||| ||| || || | Sbjct: 1061 ggccatggttatcatactgatggattgacatgcttatcgatgactttggattcacaaacg 1120 Query: 1016 attgttagtggctcggaggataattctgtgcacattgtgagcataaactcaggccaggtt 1075 ||||||||||||| |||| | |||||||||| ||||| ||||||| |||||| | Sbjct: 1121 gttgttagtggctccaaggacagttctgtgcacgctgtgaatgtaaactcgggccagatc 1180 Query: 1076 gttggttcattagttggccacaccaattccatcgagtgcattggcatctcatcgaggtac 1135 ||||| ||| |||| |||||||||| |||||| ||||| |||| |||||||| || || Sbjct: 1181 gttggctcactagtaggccacaccacttccattgagtgtgttggtatctcatcaagctat 1240 Query: 1136 aactgggtggctacagggagcat 1158 |||||| |||||||||||||| Sbjct: 1241 ggctgggtagctacagggagcat 1263 Score = 109 bits (55), Expect = 4e-20 Identities = 94/107 (87%) Strand = Plus / Plus Query: 1208 acttgcgagcatgatgaaggtgtgacatgcctggcgtggctgggctcgtcgaggtatgtg 1267 ||||| || |||||||| || ||||||| ||||| ||| | || ||||| |||||||| Sbjct: 1313 acttgtgaacatgatgagggcgtgacatcactggcatggttaggttcgtcaaggtatgtt 1372 Query: 1268 gcgtcaggatgcatcgacggcatggtgcgcatctgggacagcctctc 1314 |||||||||||||||||||||| |||||||||||||||||||||||| Sbjct: 1373 gcgtcaggatgcatcgacggcaaggtgcgcatctgggacagcctctc 1419 Score = 58.0 bits (29), Expect = 1e-04 Identities = 79/95 (83%), Gaps = 3/95 (3%) Strand = Plus / Plus Query: 249 cggcggccatgagtatctcaggtgaggtccccgaagaaggctctgacggcgagg---agg 305 ||||||| ||||||||||||| ||| | |||| ||||| |||||||| |||| ||| Sbjct: 354 cggcggcgatgagtatctcagaagagcttcccggcgaaggatctgacggtgaggaggagg 413 Query: 306 tcttcattgacgagcaggacatcatccaggagata 340 ||||||| ||||| ||||||||||||| |||||| Sbjct: 414 tcttcatcaacgaggaggacatcatccacgagata 448 Score = 58.0 bits (29), Expect = 1e-04 Identities = 77/93 (82%) Strand = Plus / Plus Query: 1358 cagtcgctggccgtctctgctgacggcaactccatagtctcggtctccacggataaatct 1417 |||||| ||||| || | |||||||||||| |||| ||||||||||| | ||| || Sbjct: 1463 cagtcgatggccatcacagctgacggcaacgccatggtctcggtctcatcagatggctcc 1522 Query: 1418 gcccgtgtcttcgacatctctatgttcaagtga 1450 |||||||| || |||||||| |||||||||||| Sbjct: 1523 gcccgtgtgtttgacatctccatgttcaagtga 1555
>gb|AC092779.5| Oryza sativa chromosome 3 BAC OSJNBb0024N19 genomic sequence, complete sequence Length = 121849 Score = 184 bits (93), Expect = 8e-43 Identities = 138/153 (90%) Strand = Plus / Plus Query: 723 agtggctgaaatggcatccacggggtcacttgataattgcaggatcagaagactgtaata 782 ||||||| |||||||||||||| || || ||||||||||||||||||||||| |||||| Sbjct: 121388 agtggcttaaatggcatccacgagggcatttgataattgcaggatcagaagattgtaatt 121447 Query: 783 tatggatgtggaatgctgaccacaatgcctttctgaatacatttgctggtcacagtagca 842 | |||||||||||||||||||| |||||| |||||||||| |||||||| || ||||||| Sbjct: 121448 tgtggatgtggaatgctgaccataatgccattctgaatacctttgctggccatagtagca 121507 Query: 843 cggtgacatgtggtgattttacccctgatggta 875 | |||||||||||||||||||| || ||||||| Sbjct: 121508 cagtgacatgtggtgattttactccagatggta 121540 Score = 113 bits (57), Expect = 2e-21 Identities = 99/113 (87%) Strand = Plus / Plus Query: 593 tgcactgtggctttcagttcagatgggaatttggtggcttgtggtagtatggatggacag 652 ||||| || ||||||||||||||||||||| | |||||| ||| ||| | ||||||| Sbjct: 121128 tgcacggttgctttcagttcagatgggaatcttttggcttctggaagttttgatggacgc 121187 Query: 653 ataaatgtatggaatacagctacacggacgcttcagggaacccttgagggttc 705 |||||||| ||||||||||||||||| || ||||||||||||||||||||||| Sbjct: 121188 ataaatgtgtggaatacagctacacgaacacttcagggaacccttgagggttc 121240 Score = 79.8 bits (40), Expect = 3e-11 Identities = 76/88 (86%) Strand = Plus / Plus Query: 867 ctgatggtaagcttatatgtagtggatcagatgatgcaacacttaggatatgggacccca 926 |||| ||||| ||||| |||| |||||||||||||||| || | || ||||||||||| | Sbjct: 121736 ctgaaggtaaacttatctgtactggatcagatgatgcatcattgagaatatgggacccaa 121795 Query: 927 gaagcgcacaatgcagacatgttgttcg 954 ||| |||||| |||||||||||||||| Sbjct: 121796 gaactgcacaaagcagacatgttgttcg 121823 Score = 69.9 bits (35), Expect = 3e-08 Identities = 83/99 (83%) Strand = Plus / Plus Query: 473 gcatgcagtcctgcagatgcatcacttgttgtttcgggaggtaaagatgacagagggttt 532 |||||||||||| |||||||||||||||| | ||| ||||| ||||| || ||||| || Sbjct: 120502 gcatgcagtcctacagatgcatcacttgtggcttctggagggaaagacgatagaggattc 120561 Query: 533 ctttggaggattggggcagcacaggatgttcaggagctg 571 || |||| |||||| ||||| |||||||| ||||||| Sbjct: 120562 ctgtggaagattggatcagcagaggatgttttggagctg 120600 Score = 44.1 bits (22), Expect = 1.8 Identities = 49/58 (84%) Strand = Plus / Plus Query: 284 gaaggctctgacggcgaggaggtcttcattgacgagcaggacatcatccaggagatac 341 ||||||||||| || |||||||| ||||| | ||| |||||||||| || ||||||| Sbjct: 119227 gaaggctctgatggagaggaggtgttcatcaatgaggaggacatcatacacgagatac 119284
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3 Length = 36192742 Score = 184 bits (93), Expect = 8e-43 Identities = 138/153 (90%) Strand = Plus / Minus Query: 723 agtggctgaaatggcatccacggggtcacttgataattgcaggatcagaagactgtaata 782 ||||||| |||||||||||||| || || ||||||||||||||||||||||| |||||| Sbjct: 27148826 agtggcttaaatggcatccacgagggcatttgataattgcaggatcagaagattgtaatt 27148767 Query: 783 tatggatgtggaatgctgaccacaatgcctttctgaatacatttgctggtcacagtagca 842 | |||||||||||||||||||| |||||| |||||||||| |||||||| || ||||||| Sbjct: 27148766 tgtggatgtggaatgctgaccataatgccattctgaatacctttgctggccatagtagca 27148707 Query: 843 cggtgacatgtggtgattttacccctgatggta 875 | |||||||||||||||||||| || ||||||| Sbjct: 27148706 cagtgacatgtggtgattttactccagatggta 27148674 Score = 147 bits (74), Expect = 2e-31 Identities = 185/222 (83%) Strand = Plus / Minus Query: 1229 gtgacatgcctggcgtggctgggctcgtcgaggtatgtggcgtcaggatgcatcgacggc 1288 ||||||| |||||| ||||||||| |||| |||| |||||||| || |||||||||||| Sbjct: 27147700 gtgacatccctggcatggctgggcccgtccaggttcgtggcgtcggggtgcatcgacggc 27147641 Query: 1289 atggtgcgcatctgggacagcctctccggtgacttggcccgcaccttcagcgggcacagg 1348 |||||||| |||||||||||||||||||| || | | | ||||| ||| ||| | Sbjct: 27147640 atggtgcgaatctgggacagcctctccggggagtgcgtgagggccttcgccggccacggt 27147581 Query: 1349 gacgtcgtgcagtcgctggccgtctctgctgacggcaactccatagtctcggtctccacg 1408 |||||||||||||| || |||||||||||||| ||||||||||| ||||| || |||||| Sbjct: 27147580 gacgtcgtgcagtccctcgccgtctctgctgatggcaactccatcgtctccgtgtccacg 27147521 Query: 1409 gataaatctgcccgtgtcttcgacatctctatgttcaagtga 1450 ||| ||||||| |||||||||| || |||||||||||| Sbjct: 27147520 gatggctctgccctcatcttcgacatttccatgttcaagtga 27147479 Score = 113 bits (57), Expect = 2e-21 Identities = 99/113 (87%) Strand = Plus / Minus Query: 593 tgcactgtggctttcagttcagatgggaatttggtggcttgtggtagtatggatggacag 652 ||||| || ||||||||||||||||||||| | |||||| ||| ||| | ||||||| Sbjct: 27149086 tgcacggttgctttcagttcagatgggaatcttttggcttctggaagttttgatggacgc 27149027 Query: 653 ataaatgtatggaatacagctacacggacgcttcagggaacccttgagggttc 705 |||||||| ||||||||||||||||| || ||||||||||||||||||||||| Sbjct: 27149026 ataaatgtgtggaatacagctacacgaacacttcagggaacccttgagggttc 27148974 Score = 79.8 bits (40), Expect = 3e-11 Identities = 76/88 (86%) Strand = Plus / Minus Query: 867 ctgatggtaagcttatatgtagtggatcagatgatgcaacacttaggatatgggacccca 926 |||| ||||| ||||| |||| |||||||||||||||| || | || ||||||||||| | Sbjct: 27148478 ctgaaggtaaacttatctgtactggatcagatgatgcatcattgagaatatgggacccaa 27148419 Query: 927 gaagcgcacaatgcagacatgttgttcg 954 ||| |||||| |||||||||||||||| Sbjct: 27148418 gaactgcacaaagcagacatgttgttcg 27148391 Score = 77.8 bits (39), Expect = 1e-10 Identities = 99/119 (83%) Strand = Plus / Minus Query: 956 ggccatggctatcatactcaaggattgacatgtttagctattactccggactcccagtca 1015 ||||||||||||||||| | ||||| ||||| ||| | ||||| |||| ||||| || Sbjct: 27148313 ggccatggctatcatacggatggattaacatgcttatcagttacttcggattcccaaaca 27148254 Query: 1016 attgttagtggctcggaggataattctgtgcacattgtgagcataaactcaggccaggt 1074 ||||||||||| || |||||||||||||| |||||| |||||||||||||||||| Sbjct: 27148253 attgttagtggttcaaaggataattctgtgtgtgttgtgaacataaactcaggccaggt 27148195 Score = 69.9 bits (35), Expect = 3e-08 Identities = 83/99 (83%) Strand = Plus / Minus Query: 473 gcatgcagtcctgcagatgcatcacttgttgtttcgggaggtaaagatgacagagggttt 532 |||||||||||| |||||||||||||||| | ||| ||||| ||||| || ||||| || Sbjct: 27149712 gcatgcagtcctacagatgcatcacttgtggcttctggagggaaagacgatagaggattc 27149653 Query: 533 ctttggaggattggggcagcacaggatgttcaggagctg 571 || |||| |||||| ||||| |||||||| ||||||| Sbjct: 27149652 ctgtggaagattggatcagcagaggatgttttggagctg 27149614 Score = 56.0 bits (28), Expect = 5e-04 Identities = 57/64 (89%), Gaps = 2/64 (3%) Strand = Plus / Minus Query: 1133 tacaactgggtggctacagggagcattgat-agaactctcattatctgggaccttgctcg 1191 ||||| |||||||||||||||||||| ||| |||| ||||| ||||||||||||| ||| Sbjct: 27147919 tacaattgggtggctacagggagcatggatcagaa-gctcatcatctgggaccttggtcg 27147861 Query: 1192 ccaa 1195 |||| Sbjct: 27147860 ccaa 27147857 Score = 44.1 bits (22), Expect = 1.8 Identities = 49/58 (84%) Strand = Plus / Minus Query: 284 gaaggctctgacggcgaggaggtcttcattgacgagcaggacatcatccaggagatac 341 ||||||||||| || |||||||| ||||| | ||| |||||||||| || ||||||| Sbjct: 27150987 gaaggctctgatggagaggaggtgttcatcaatgaggaggacatcatacacgagatac 27150930
>gb|AC087851.4|AC087851 Oryza sativa chromosome 3 BAC OSJNBb0072E24 genomic sequence, complete sequence Length = 111882 Score = 184 bits (93), Expect = 8e-43 Identities = 138/153 (90%) Strand = Plus / Plus Query: 723 agtggctgaaatggcatccacggggtcacttgataattgcaggatcagaagactgtaata 782 ||||||| |||||||||||||| || || ||||||||||||||||||||||| |||||| Sbjct: 1896 agtggcttaaatggcatccacgagggcatttgataattgcaggatcagaagattgtaatt 1955 Query: 783 tatggatgtggaatgctgaccacaatgcctttctgaatacatttgctggtcacagtagca 842 | |||||||||||||||||||| |||||| |||||||||| |||||||| || ||||||| Sbjct: 1956 tgtggatgtggaatgctgaccataatgccattctgaatacctttgctggccatagtagca 2015 Query: 843 cggtgacatgtggtgattttacccctgatggta 875 | |||||||||||||||||||| || ||||||| Sbjct: 2016 cagtgacatgtggtgattttactccagatggta 2048 Score = 147 bits (74), Expect = 2e-31 Identities = 185/222 (83%) Strand = Plus / Plus Query: 1229 gtgacatgcctggcgtggctgggctcgtcgaggtatgtggcgtcaggatgcatcgacggc 1288 ||||||| |||||| ||||||||| |||| |||| |||||||| || |||||||||||| Sbjct: 3022 gtgacatccctggcatggctgggcccgtccaggttcgtggcgtcggggtgcatcgacggc 3081 Query: 1289 atggtgcgcatctgggacagcctctccggtgacttggcccgcaccttcagcgggcacagg 1348 |||||||| |||||||||||||||||||| || | | | ||||| ||| ||| | Sbjct: 3082 atggtgcgaatctgggacagcctctccggggagtgcgtgagggccttcgccggccacggt 3141 Query: 1349 gacgtcgtgcagtcgctggccgtctctgctgacggcaactccatagtctcggtctccacg 1408 |||||||||||||| || |||||||||||||| ||||||||||| ||||| || |||||| Sbjct: 3142 gacgtcgtgcagtccctcgccgtctctgctgatggcaactccatcgtctccgtgtccacg 3201 Query: 1409 gataaatctgcccgtgtcttcgacatctctatgttcaagtga 1450 ||| ||||||| |||||||||| || |||||||||||| Sbjct: 3202 gatggctctgccctcatcttcgacatttccatgttcaagtga 3243 Score = 113 bits (57), Expect = 2e-21 Identities = 99/113 (87%) Strand = Plus / Plus Query: 593 tgcactgtggctttcagttcagatgggaatttggtggcttgtggtagtatggatggacag 652 ||||| || ||||||||||||||||||||| | |||||| ||| ||| | ||||||| Sbjct: 1636 tgcacggttgctttcagttcagatgggaatcttttggcttctggaagttttgatggacgc 1695 Query: 653 ataaatgtatggaatacagctacacggacgcttcagggaacccttgagggttc 705 |||||||| ||||||||||||||||| || ||||||||||||||||||||||| Sbjct: 1696 ataaatgtgtggaatacagctacacgaacacttcagggaacccttgagggttc 1748 Score = 79.8 bits (40), Expect = 3e-11 Identities = 76/88 (86%) Strand = Plus / Plus Query: 867 ctgatggtaagcttatatgtagtggatcagatgatgcaacacttaggatatgggacccca 926 |||| ||||| ||||| |||| |||||||||||||||| || | || ||||||||||| | Sbjct: 2244 ctgaaggtaaacttatctgtactggatcagatgatgcatcattgagaatatgggacccaa 2303 Query: 927 gaagcgcacaatgcagacatgttgttcg 954 ||| |||||| |||||||||||||||| Sbjct: 2304 gaactgcacaaagcagacatgttgttcg 2331 Score = 77.8 bits (39), Expect = 1e-10 Identities = 99/119 (83%) Strand = Plus / Plus Query: 956 ggccatggctatcatactcaaggattgacatgtttagctattactccggactcccagtca 1015 ||||||||||||||||| | ||||| ||||| ||| | ||||| |||| ||||| || Sbjct: 2409 ggccatggctatcatacggatggattaacatgcttatcagttacttcggattcccaaaca 2468 Query: 1016 attgttagtggctcggaggataattctgtgcacattgtgagcataaactcaggccaggt 1074 ||||||||||| || |||||||||||||| |||||| |||||||||||||||||| Sbjct: 2469 attgttagtggttcaaaggataattctgtgtgtgttgtgaacataaactcaggccaggt 2527 Score = 69.9 bits (35), Expect = 3e-08 Identities = 83/99 (83%) Strand = Plus / Plus Query: 473 gcatgcagtcctgcagatgcatcacttgttgtttcgggaggtaaagatgacagagggttt 532 |||||||||||| |||||||||||||||| | ||| ||||| ||||| || ||||| || Sbjct: 1010 gcatgcagtcctacagatgcatcacttgtggcttctggagggaaagacgatagaggattc 1069 Query: 533 ctttggaggattggggcagcacaggatgttcaggagctg 571 || |||| |||||| ||||| |||||||| ||||||| Sbjct: 1070 ctgtggaagattggatcagcagaggatgttttggagctg 1108 Score = 56.0 bits (28), Expect = 5e-04 Identities = 57/64 (89%), Gaps = 2/64 (3%) Strand = Plus / Plus Query: 1133 tacaactgggtggctacagggagcattgat-agaactctcattatctgggaccttgctcg 1191 ||||| |||||||||||||||||||| ||| |||| ||||| ||||||||||||| ||| Sbjct: 2803 tacaattgggtggctacagggagcatggatcagaa-gctcatcatctgggaccttggtcg 2861 Query: 1192 ccaa 1195 |||| Sbjct: 2862 ccaa 2865
>emb|AJ234516.1|HVU234516 Hordeum vulgare genomic DNA fragment; clone MWG0577 Length = 1247 Score = 184 bits (93), Expect = 8e-43 Identities = 105/109 (96%) Strand = Plus / Plus Query: 594 gcactgtggctttcagttcagatgggaatttggtggcttgtggtagtatggatggacaga 653 |||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| Sbjct: 348 gcactgtggctttcagttcagatgggaaattggtggcttgtggaagtatggatggacaga 407 Query: 654 taaatgtatggaatacagctacacggacgcttcagggaacccttgaggg 702 ||||||||||||||||||||||||| || |||||||||||||||||||| Sbjct: 408 taaatgtatggaatacagctacacgaacacttcagggaacccttgaggg 456 Score = 121 bits (61), Expect = 9e-24 Identities = 106/121 (87%) Strand = Plus / Plus Query: 755 ataattgcaggatcagaagactgtaatatatggatgtggaatgctgaccacaatgccttt 814 |||||||| |||||||| |||| || |||||||||||| |||| |||| |||||||| | Sbjct: 641 ataattgctggatcagaggacttcaacatatggatgtgggatgcggacctcaatgcctct 700 Query: 815 ctgaatacatttgctggtcacagtagcacggtgacatgtggtgattttacccctgatggt 874 |||||||||||||||| ||| ||| ||| |||||||||||||||||||| ||||||||| Sbjct: 701 gtgaatacatttgctggccacggtaacacagtgacatgtggtgattttacacctgatggt 760 Query: 875 a 875 | Sbjct: 761 a 761 Score = 87.7 bits (44), Expect = 1e-13 Identities = 50/52 (96%) Strand = Plus / Plus Query: 872 ggtaagcttatatgtagtggatcagatgatgcaacacttaggatatgggacc 923 ||||||||||| |||||||||||||||||||||||||| ||||||||||||| Sbjct: 1183 ggtaagcttatttgtagtggatcagatgatgcaacactaaggatatgggacc 1234
>gb|BT017622.1| Zea mays clone EL01N0435F04.c mRNA sequence Length = 659 Score = 97.6 bits (49), Expect = 1e-16 Identities = 91/105 (86%) Strand = Plus / Plus Query: 1210 ttgcgagcatgatgaaggtgtgacatgcctggcgtggctgggctcgtcgaggtatgtggc 1269 |||||| |||||||| || ||||||| ||| | ||||| || ||||| ||||| || || Sbjct: 237 ttgcgaacatgatgagggcgtgacatcgctgacatggctaggttcgtcaaggtacgttgc 296 Query: 1270 gtcaggatgcatcgacggcatggtgcgcatctgggacagcctctc 1314 |||||||||||| ||||||| |||||||||||||||||||||||| Sbjct: 297 gtcaggatgcattgacggcaaggtgcgcatctgggacagcctctc 341 Score = 91.7 bits (46), Expect = 8e-15 Identities = 118/142 (83%) Strand = Plus / Plus Query: 1017 ttgttagtggctcggaggataattctgtgcacattgtgagcataaactcaggccaggttg 1076 ||||||| ||||| |||| | ||||||||||||||||| ||||||| |||||||| | Sbjct: 44 ttgttagcggctccaaggacagttctgtgcacattgtgaatttaaactcgggccaggtcg 103 Query: 1077 ttggttcattagttggccacaccaattccatcgagtgcattggcatctcatcgaggtaca 1136 |||| ||||||| |||||||||||||| || |||||| |||| ||||| || || || Sbjct: 104 ttggctcattagcaggccacaccaattctattgagtgccttggtatctcgtcaagctatg 163 Query: 1137 actgggtggctacagggagcat 1158 |||||| |||||||||||||| Sbjct: 164 gctgggtagctacagggagcat 185 Score = 58.0 bits (29), Expect = 1e-04 Identities = 77/93 (82%) Strand = Plus / Plus Query: 1358 cagtcgctggccgtctctgctgacggcaactccatagtctcggtctccacggataaatct 1417 |||||||||||| || |||||||||||||| |||| ||||| | ||| | ||| || Sbjct: 385 cagtcgctggccatcactgctgacggcaacaccatggtctccgcctcatcagatggctcc 444 Query: 1418 gcccgtgtcttcgacatctctatgttcaagtga 1450 |||||||| || |||||||| |||||||||||| Sbjct: 445 gcccgtgtgtttgacatctccatgttcaagtga 477
>gb|AY110550.1| Zea mays CL26345_2 mRNA sequence Length = 594 Score = 97.6 bits (49), Expect = 1e-16 Identities = 91/105 (86%) Strand = Plus / Minus Query: 1210 ttgcgagcatgatgaaggtgtgacatgcctggcgtggctgggctcgtcgaggtatgtggc 1269 |||||| |||||||| || ||||||| ||| | ||||| || ||||| ||||| || || Sbjct: 495 ttgcgaacatgatgagggcgtgacatcgctgacatggctaggttcgtcaaggtacgttgc 436 Query: 1270 gtcaggatgcatcgacggcatggtgcgcatctgggacagcctctc 1314 |||||||||||| ||||||| |||||||||||||||||||||||| Sbjct: 435 gtcaggatgcattgacggcaaggtgcgcatctgggacagcctctc 391 Score = 46.1 bits (23), Expect = 0.45 Identities = 32/35 (91%) Strand = Plus / Minus Query: 1358 cagtcgctggccgtctctgctgacggcaactccat 1392 |||||||||||| || |||||||||||||| |||| Sbjct: 347 cagtcgctggccatcactgctgacggcaacaccat 313
>emb|BX901890.16| Zebrafish DNA sequence from clone DKEY-265J11, complete sequence Length = 195144 Score = 44.1 bits (22), Expect = 1.8 Identities = 25/26 (96%) Strand = Plus / Plus Query: 640 tatggatggacagataaatgtatgga 665 |||||||||| ||||||||||||||| Sbjct: 42114 tatggatggatagataaatgtatgga 42139
>ref|NM_105842.2| Arabidopsis thaliana nucleotide binding (AT1G71840) mRNA, complete cds Length = 1601 Score = 44.1 bits (22), Expect = 1.8 Identities = 34/38 (89%) Strand = Plus / Plus Query: 764 ggatcagaagactgtaatatatggatgtggaatgctga 801 ||||||||||| ||| | ||||||||||||||||||| Sbjct: 723 ggatcagaagattgttctctatggatgtggaatgctga 760
>gb|AY080732.1| Arabidopsis thaliana unknown protein (At1g71840) mRNA, complete cds Length = 1641 Score = 44.1 bits (22), Expect = 1.8 Identities = 34/38 (89%) Strand = Plus / Plus Query: 764 ggatcagaagactgtaatatatggatgtggaatgctga 801 ||||||||||| ||| | ||||||||||||||||||| Sbjct: 723 ggatcagaagattgttctctatggatgtggaatgctga 760
>gb|AC010241.5| Homo sapiens chromosome 5 clone CTC-355H1, complete sequence Length = 126582 Score = 44.1 bits (22), Expect = 1.8 Identities = 22/22 (100%) Strand = Plus / Minus Query: 479 agtcctgcagatgcatcacttg 500 |||||||||||||||||||||| Sbjct: 23632 agtcctgcagatgcatcacttg 23611
>emb|BX908798.1| Parachlamydia-related symbiont UWE25, complete genome Length = 2414465 Score = 44.1 bits (22), Expect = 1.8 Identities = 28/30 (93%) Strand = Plus / Minus Query: 364 tgaccaagacgatgccgacgatgatgacga 393 |||| ||||||||| ||||||||||||||| Sbjct: 1891449 tgacgaagacgatgacgacgatgatgacga 1891420
>emb|BX569694.1| Synechococcus sp. WH8102 complete genome; segment 6/7 Length = 349122 Score = 44.1 bits (22), Expect = 1.8 Identities = 31/34 (91%) Strand = Plus / Minus Query: 369 aagacgatgccgacgatgatgacgaagaagacca 402 |||| ||||||||||||| |||||| |||||||| Sbjct: 232552 aagatgatgccgacgatggtgacgaggaagacca 232519
>emb|AL031747.9|PFMAL1P4 Plasmodium falciparum DNA from MAL1P4, complete sequence Length = 66442 Score = 44.1 bits (22), Expect = 1.8 Identities = 28/30 (93%) Strand = Plus / Plus Query: 371 gacgatgccgacgatgatgacgaagaagac 400 ||||||| ||||||||||||||||||||| Sbjct: 32142 gacgatgatgacgatgatgacgaagaagac 32171
>emb|BX649590.15| Zebrafish DNA sequence from clone CH211-143I6 in linkage group 9, complete sequence Length = 120653 Score = 44.1 bits (22), Expect = 1.8 Identities = 25/26 (96%) Strand = Plus / Plus Query: 641 atggatggacagataaatgtatggaa 666 ||||| |||||||||||||||||||| Sbjct: 36549 atggacggacagataaatgtatggaa 36574
>dbj|AP006687.1| Lotus japonicus genomic DNA, chromosome 6, clone:LjT41F23, TM0382, complete sequence Length = 99748 Score = 44.1 bits (22), Expect = 1.8 Identities = 22/22 (100%) Strand = Plus / Minus Query: 527 gggtttctttggaggattgggg 548 |||||||||||||||||||||| Sbjct: 54267 gggtttctttggaggattgggg 54246
>gb|AC012654.2|F14O23 Arabidopsis thaliana chromosome 1 BAC F14O23 sequence, complete sequence Length = 98471 Score = 44.1 bits (22), Expect = 1.8 Identities = 34/38 (89%) Strand = Plus / Plus Query: 764 ggatcagaagactgtaatatatggatgtggaatgctga 801 ||||||||||| ||| | ||||||||||||||||||| Sbjct: 82521 ggatcagaagattgttctctatggatgtggaatgctga 82558
>dbj|AP001648.4| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-736L3, complete sequence Length = 166013 Score = 44.1 bits (22), Expect = 1.8 Identities = 25/26 (96%) Strand = Plus / Minus Query: 639 gtatggatggacagataaatgtatgg 664 ||||||||||||||||||||| |||| Sbjct: 44370 gtatggatggacagataaatggatgg 44345
>gb|BT001964.1| Arabidopsis thaliana clone U18329 unknown protein (At1g71840) mRNA, complete cds Length = 1255 Score = 44.1 bits (22), Expect = 1.8 Identities = 34/38 (89%) Strand = Plus / Plus Query: 764 ggatcagaagactgtaatatatggatgtggaatgctga 801 ||||||||||| ||| | ||||||||||||||||||| Sbjct: 517 ggatcagaagattgttctctatggatgtggaatgctga 554
>emb|BX897750.11| Zebrafish DNA sequence from clone DKEY-278N18, complete sequence Length = 182033 Score = 44.1 bits (22), Expect = 1.8 Identities = 25/26 (96%) Strand = Plus / Minus Query: 640 tatggatggacagataaatgtatgga 665 |||||||||| ||||||||||||||| Sbjct: 132025 tatggatggatagataaatgtatgga 132000
>ref|XM_001019354.1| Tetrahymena thermophila SB210 hypothetical protein (TTHERM_00388500) mRNA, complete cds Length = 2823 Score = 42.1 bits (21), Expect = 7.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 383 gatgatgacgaagaagaccaagaga 407 |||||||||||||||||| |||||| Sbjct: 1285 gatgatgacgaagaagacgaagaga 1309
>emb|BX927242.14| Zebrafish DNA sequence from clone CH211-195H1 in linkage group 11, complete sequence Length = 194610 Score = 42.1 bits (21), Expect = 7.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 641 atggatggacagataaatgtatgga 665 ||||||||| ||||||||||||||| Sbjct: 102328 atggatggatagataaatgtatgga 102304
>gb|CP000457.1| Arthrobacter sp. FB24 plasmid 3, complete sequence Length = 96488 Score = 42.1 bits (21), Expect = 7.0 Identities = 27/29 (93%) Strand = Plus / Minus Query: 364 tgaccaagacgatgccgacgatgatgacg 392 |||||| | |||||||||||||||||||| Sbjct: 16933 tgaccatgccgatgccgacgatgatgacg 16905
>ref|NM_001054175.1| Oryza sativa (japonica cultivar-group) Os02g0659100 (Os02g0659100) mRNA, complete cds Length = 2349 Score = 42.1 bits (21), Expect = 7.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 379 cgacgatgatgacgaagaaga 399 ||||||||||||||||||||| Sbjct: 773 cgacgatgatgacgaagaaga 753
>emb|CR854904.9| Zebrafish DNA sequence from clone CH211-214F6 in linkage group 10, complete sequence Length = 116150 Score = 42.1 bits (21), Expect = 7.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 380 gacgatgatgacgaagaagaccaag 404 ||||| ||||||||||||||||||| Sbjct: 21639 gacgaagatgacgaagaagaccaag 21663
>ref|XM_360724.1| Magnaporthe grisea 70-15 hypothetical protein (MG03267.4) partial mRNA Length = 948 Score = 42.1 bits (21), Expect = 7.0 Identities = 27/29 (93%) Strand = Plus / Plus Query: 370 agacgatgccgacgatgatgacgaagaag 398 |||||||| ||||||||||||||| |||| Sbjct: 870 agacgatgacgacgatgatgacgatgaag 898
>gb|AC168274.5| Mus musculus BAC RP23-229B1 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 177020 Score = 42.1 bits (21), Expect = 7.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1627 agtggtacaagagtcacaaga 1647 ||||||||||||||||||||| Sbjct: 69053 agtggtacaagagtcacaaga 69033
>gb|AC158302.3| Mus musculus chromosome 5, clone RP24-61O18, complete sequence Length = 215326 Score = 42.1 bits (21), Expect = 7.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1433 atctctatgttcaagtgagaa 1453 ||||||||||||||||||||| Sbjct: 104150 atctctatgttcaagtgagaa 104170
>ref|XM_545626.2| PREDICTED: Canis familiaris similar to CG18437-PA (LOC488505), mRNA Length = 9522 Score = 42.1 bits (21), Expect = 7.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 722 gagtggctgaaatggcatcca 742 ||||||||||||||||||||| Sbjct: 5608 gagtggctgaaatggcatcca 5588
>gb|AC116596.3| Mus musculus BAC clone RP24-335P21 from chromosome 15, complete sequence Length = 165103 Score = 42.1 bits (21), Expect = 7.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 639 gtatggatggacagataaatg 659 ||||||||||||||||||||| Sbjct: 28967 gtatggatggacagataaatg 28987
>gb|AC121922.3| Mus musculus BAC clone RP24-198H19 from chromosome 9, complete sequence Length = 180690 Score = 42.1 bits (21), Expect = 7.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 641 atggatggacagataaatgtatgga 665 ||||||||||||||||||| ||||| Sbjct: 52957 atggatggacagataaatggatgga 52933
>ref|XM_546660.2| PREDICTED: Canis familiaris similar to retinoic acid induced 1 (LOC489541), mRNA Length = 5854 Score = 42.1 bits (21), Expect = 7.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 97 tcgtccagccaccggtgagccttgg 121 |||||||||||||||| |||||||| Sbjct: 2495 tcgtccagccaccggtcagccttgg 2471
>dbj|AP008230.1| Desulfitobacterium hafniense Y51 genomic DNA, complete genome Length = 5727534 Score = 42.1 bits (21), Expect = 7.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 861 ttacccctgatggtaagctta 881 ||||||||||||||||||||| Sbjct: 3974548 ttacccctgatggtaagctta 3974528
>gb|AE014824.1| Plasmodium falciparum 3D7 chromosome 14 section 9 of 13 of the complete sequence Length = 250022 Score = 42.1 bits (21), Expect = 7.0 Identities = 27/29 (93%) Strand = Plus / Minus Query: 371 gacgatgccgacgatgatgacgaagaaga 399 ||||||| ||| ||||||||||||||||| Sbjct: 56683 gacgatgacgatgatgatgacgaagaaga 56655
>gb|AC022790.8| Homo sapiens chromosome 8, clone RP11-744J10, complete sequence Length = 204034 Score = 42.1 bits (21), Expect = 7.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1009 ccagtcaattgttagtggctc 1029 ||||||||||||||||||||| Sbjct: 21018 ccagtcaattgttagtggctc 20998
>ref|XM_744234.1| Aspergillus fumigatus Af293 glutaminyl-tRNA synthetase (Afu2g01920) partial mRNA Length = 1995 Score = 42.1 bits (21), Expect = 7.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 278 cccgaagaaggctctgacggc 298 ||||||||||||||||||||| Sbjct: 1591 cccgaagaaggctctgacggc 1611
>ref|XM_804406.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053507969.54) partial mRNA Length = 2217 Score = 42.1 bits (21), Expect = 7.0 Identities = 27/29 (93%) Strand = Plus / Plus Query: 371 gacgatgccgacgatgatgacgaagaaga 399 ||||||| |||||||||||| |||||||| Sbjct: 1186 gacgatggcgacgatgatgaagaagaaga 1214
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9 Length = 22696651 Score = 42.1 bits (21), Expect = 7.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 638 agtatggatggacagataaatgtat 662 |||||||||||||| |||||||||| Sbjct: 1187404 agtatggatggacacataaatgtat 1187428 Score = 42.1 bits (21), Expect = 7.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1633 acaagagtcacaagaccctcc 1653 ||||||||||||||||||||| Sbjct: 10044080 acaagagtcacaagaccctcc 10044100
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2 Length = 35954743 Score = 42.1 bits (21), Expect = 7.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 379 cgacgatgatgacgaagaaga 399 ||||||||||||||||||||| Sbjct: 26688061 cgacgatgatgacgaagaaga 26688041
>gb|AC013746.10| Homo sapiens chromosome 8, clone RP11-131P18, complete sequence Length = 212337 Score = 42.1 bits (21), Expect = 7.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1009 ccagtcaattgttagtggctc 1029 ||||||||||||||||||||| Sbjct: 171043 ccagtcaattgttagtggctc 171023
>emb|BX323862.18| Zebrafish DNA sequence from clone DKEYP-97A5 in linkage group 6, complete sequence Length = 184810 Score = 42.1 bits (21), Expect = 7.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 641 atggatggacagataaatgtatgga 665 ||||||||||||||||||| ||||| Sbjct: 177706 atggatggacagataaatggatgga 177682 Score = 42.1 bits (21), Expect = 7.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 641 atggatggacagataaatgtatgga 665 ||||||||||||||||||| ||||| Sbjct: 177918 atggatggacagataaatggatgga 177894
>gb|AC084265.4| Homo sapiens chromosome 2, clone CTB-2367F13, complete sequence Length = 127066 Score = 42.1 bits (21), Expect = 7.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1160 gatagaactctcattatctgg 1180 ||||||||||||||||||||| Sbjct: 43546 gatagaactctcattatctgg 43566
>emb|AL117338.15|HSA490O24 Human DNA sequence from clone RP11-490O24 on chromosome 10 Contains a 60S ribosomal protein L23 (RPL23) pseudogene and a novel gene, complete sequence Length = 168778 Score = 42.1 bits (21), Expect = 7.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 641 atggatggacagataaatgtatgga 665 ||||||||||||||||||| ||||| Sbjct: 136215 atggatggacagataaatggatgga 136191
>emb|CR380954.1| Candida glabrata strain CBS138 chromosome H complete sequence Length = 1050361 Score = 42.1 bits (21), Expect = 7.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1434 tctctatgttcaagtgagaaa 1454 ||||||||||||||||||||| Sbjct: 996869 tctctatgttcaagtgagaaa 996849
>emb|AL929220.13| Zebrafish DNA sequence from clone DKEY-65B13 in linkage group 20, complete sequence Length = 227539 Score = 42.1 bits (21), Expect = 7.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 641 atggatggacagataaatgtatgga 665 ||||||||||||||||||| ||||| Sbjct: 29417 atggatggacagataaatggatgga 29441
>emb|BX248577.16| Zebrafish DNA sequence from clone CH211-162H21 in linkage group 11, complete sequence Length = 155980 Score = 42.1 bits (21), Expect = 7.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 641 atggatggacagataaatgtatgga 665 ||||||||||||||||||| ||||| Sbjct: 47689 atggatggacagataaatggatgga 47713 Score = 42.1 bits (21), Expect = 7.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 641 atggatggacagataaatgtatgga 665 ||||||||||||||||||| ||||| Sbjct: 48323 atggatggacagataaatggatgga 48347
>emb|AL732390.10| Mouse DNA sequence from clone RP23-413O19 on chromosome 11 Contains a laminin receptor 1 (ribosomal protein SA) (Lamr1) pseudogene, a novel gene, the 3' end of the Fgf18 gene for fibroblast growth factor 18 and a CpG island, complete sequence Length = 195612 Score = 42.1 bits (21), Expect = 7.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 641 atggatggacagataaatgtatgga 665 ||||||||||||| ||||||||||| Sbjct: 37559 atggatggacagacaaatgtatgga 37535
>emb|CR352330.14| Mouse DNA sequence from clone RP23-374F1 on chromosome X, complete sequence Length = 82726 Score = 42.1 bits (21), Expect = 7.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 641 atggatggacagataaatgtatgga 665 ||||||||||||||||||| ||||| Sbjct: 7914 atggatggacagataaatggatgga 7938
>gb|AC108476.5| Homo sapiens BAC clone RP11-1413K20 from 2, complete sequence Length = 139342 Score = 42.1 bits (21), Expect = 7.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1160 gatagaactctcattatctgg 1180 ||||||||||||||||||||| Sbjct: 41778 gatagaactctcattatctgg 41798
>gb|AC155299.2| Mus musculus BAC clone RP24-229D17 from chromosome 15, complete sequence Length = 198559 Score = 42.1 bits (21), Expect = 7.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 639 gtatggatggacagataaatg 659 ||||||||||||||||||||| Sbjct: 26078 gtatggatggacagataaatg 26058
>dbj|AP005072.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0708H12 Length = 162381 Score = 42.1 bits (21), Expect = 7.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 379 cgacgatgatgacgaagaaga 399 ||||||||||||||||||||| Sbjct: 50091 cgacgatgatgacgaagaaga 50071
>dbj|AP005289.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1112_F09 Length = 139371 Score = 42.1 bits (21), Expect = 7.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 379 cgacgatgatgacgaagaaga 399 ||||||||||||||||||||| Sbjct: 122222 cgacgatgatgacgaagaaga 122202
>dbj|AP005789.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0563F09 Length = 174905 Score = 42.1 bits (21), Expect = 7.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 638 agtatggatggacagataaatgtat 662 |||||||||||||| |||||||||| Sbjct: 18278 agtatggatggacacataaatgtat 18302
>dbj|AP005569.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1310_F05 Length = 107916 Score = 42.1 bits (21), Expect = 7.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 638 agtatggatggacagataaatgtat 662 |||||||||||||| |||||||||| Sbjct: 75998 agtatggatggacacataaatgtat 76022
>dbj|AP005566.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1253_E02 Length = 166645 Score = 42.1 bits (21), Expect = 7.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1633 acaagagtcacaagaccctcc 1653 ||||||||||||||||||||| Sbjct: 3758 acaagagtcacaagaccctcc 3778
>dbj|AP005128.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0466E03 Length = 138343 Score = 42.1 bits (21), Expect = 7.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1633 acaagagtcacaagaccctcc 1653 ||||||||||||||||||||| Sbjct: 73384 acaagagtcacaagaccctcc 73404
>emb|AL929324.15| Zebrafish DNA sequence from clone BUSM1-SL10 in linkage group 20, complete sequence Length = 117178 Score = 42.1 bits (21), Expect = 7.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 641 atggatggacagataaatgtatgga 665 ||||||||||||||||||| ||||| Sbjct: 34451 atggatggacagataaatggatgga 34475
>dbj|AK107559.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-130-B07, full insert sequence Length = 2349 Score = 42.1 bits (21), Expect = 7.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 379 cgacgatgatgacgaagaaga 399 ||||||||||||||||||||| Sbjct: 773 cgacgatgatgacgaagaaga 753
>emb|BX537292.5| Zebrafish DNA sequence from clone CH211-213E17 in linkage group 10, complete sequence Length = 189446 Score = 42.1 bits (21), Expect = 7.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 380 gacgatgatgacgaagaagaccaag 404 ||||| ||||||||||||||||||| Sbjct: 109154 gacgaagatgacgaagaagaccaag 109130
>gb|AC113936.16| Mus musculus chromosome 10, clone RP23-9F21, complete sequence Length = 205086 Score = 42.1 bits (21), Expect = 7.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1627 agtggtacaagagtcacaaga 1647 ||||||||||||||||||||| Sbjct: 12108 agtggtacaagagtcacaaga 12128
>gb|AY609578.1| Sus scrofa clone Clu_19594.scr.msk.p1.Contig2, mRNA sequence Length = 1109 Score = 42.1 bits (21), Expect = 7.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 48 gctgctcctcctcttccgcct 68 ||||||||||||||||||||| Sbjct: 149 gctgctcctcctcttccgcct 129
>gb|U69259.1|SCU69259 Synthetic Plasmodium falciparum reductase-thymidylate synthase gene, complete cds Length = 1916 Score = 42.1 bits (21), Expect = 7.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 379 cgacgatgatgacgaagaaga 399 ||||||||||||||||||||| Sbjct: 874 cgacgatgatgacgaagaaga 894
>emb|CT009569.17| Pig DNA sequence from clone CH242-213C10 on chromosome 17, complete sequence Length = 201723 Score = 42.1 bits (21), Expect = 7.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 641 atggatggacagataaatgtatgga 665 ||||||||||||||| ||||||||| Sbjct: 147973 atggatggacagatagatgtatgga 147997
>gb|U17243.1|YSCL8003 Saccharomyces cerevisiae chromosome XII cosmid 8003 Length = 40214 Score = 42.1 bits (21), Expect = 7.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 379 cgacgatgatgacgaagaaga 399 ||||||||||||||||||||| Sbjct: 1496 cgacgatgatgacgaagaaga 1516
>emb|AL663056.11| Mouse DNA sequence from clone RP23-24O15 on chromosome X, complete sequence Length = 197729 Score = 42.1 bits (21), Expect = 7.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 641 atggatggacagataaatgtatgga 665 ||||||||||||||||||| ||||| Sbjct: 161049 atggatggacagataaatggatgga 161025 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 293,396,090 Number of extensions: 14589310 Number of successful extensions: 279217 Number of sequences better than 10.0: 67 Number of HSP's gapped: 279195 Number of HSP's successfully gapped: 105 Length of query: 1841 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 1818 Effective length of database: 18,503,978,556 Effective search space: 33640233014808 Effective search space used: 33640233014808 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)