>LOC_Os03g21980:12003.t01951:unspliced-genomic TRNA pseudouridine synthase, putative, expressed|
          Length = 3966
 Score =  295 bits (639), Expect(9) = 0.0
 Identities = 122/147 (82%), Positives = 135/147 (91%)
 Frame = +2 / +3

                                                                        
Query: 1178 QIRKMVGTAVAVKRGLLPKDIIKLSLAKFSRIVLPIAPSEVLILRDNSFCTRNKQGSIVR 1357
            QIRKMVGT+VAVKRGLLPKDII LSLAKFSRIVLPIAPSEVL+LRDNSFC RNKQG+IVR
Sbjct: 3177 QIRKMVGTSVAVKRGLLPKDIIALSLAKFSRIVLPIAPSEVLVLRDNSFCLRNKQGTIVR 3356

                                                                        
Query: 1358 PGMQSINESEEIKKGVMEFYKVALVPELAKFLDESLPPWQEWVENLDHFTSIPDSQLDEV 1537
            PG+QS+NESEE+KKGVMEFY+ ALVPELA FLD S+PPW+EWVENLD FTSIPD QL+EV
Sbjct: 3357 PGIQSMNESEEVKKGVMEFYRAALVPELANFLDASMPPWKEWVENLDRFTSIPDPQLEEV 3536

                                       
Query: 1538 RTAYRAWKDDYDRVKMARKNTGSG*YV 1618
            R+AYR WK DYDRVKMARK+  S *+V
Sbjct: 3537 RSAYRVWKADYDRVKMARKSASSD*FV 3617



 Score =  136 bits (291), Expect(9) = 0.0
 Identities = 58/95 (61%), Positives = 72/95 (75%)
 Frame = +2 / +1

                                                                        
Query: 899  ADQSTSSADDEYLNFPSILDSSAREDNCKMDNPELPQSRVQIQARWLHEPNDNDRLSASH 1078
            +D  T+S  DE     S +  S+  ++   DNPE  + +VQI+ARWLHEP++NDRL+ASH
Sbjct: 2482 SDDGTTSDHDEEDLNSSSIIGSSVPEDSYKDNPEFSEKQVQIRARWLHEPDENDRLNASH 2661

                                               
Query: 1079 FRDILTCSCGELQSSSGVQFVELTICGVSFMLHQI 1183
            FRDILT SCGELQ SSG+QFVELTI GVSFMLHQ+
Sbjct: 2662 FRDILTFSCGELQISSGIQFVELTISGVSFMLHQV 2766



 Score =  114 bits (243), Expect(9) = 0.0
 Identities = 45/50 (90%), Positives = 49/50 (98%)
 Frame = +2 / +2

                                                              
Query: 485  VHSLATMISLKMEIPDRAWEKDPDGIALANFINSNLPDNIKVFSILPAQR 634
            VHSLATMISLKMEIPDRAWE DPDGIAL+NFINSNLPDN++VFS+LPAQR
Sbjct: 1139 VHSLATMISLKMEIPDRAWENDPDGIALSNFINSNLPDNVRVFSVLPAQR 1288



 Score =  101 bits (216), Expect(9) = 0.0
 Identities = 42/49 (85%), Positives = 43/49 (87%)
 Frame = +2 / +2

                                                             
Query: 632  RSFDVRRECLYREYFYLLPAEIIGIKSSCSSGEVEEHLIEFNNILKGFE 778
            RSFDVRRECLYREY YLLPAEIIGIK  CSS EV EHL EFN+ILKGFE
Sbjct: 1382 RSFDVRRECLYREYLYLLPAEIIGIKGGCSSEEVMEHLSEFNSILKGFE 1528



 Score = 89.0 bits (188), Expect(9) = 0.0
 Identities = 37/40 (92%), Positives = 39/40 (97%)
 Frame = +2 / +3

                                                    
Query: 368  STIESVLESAIFKAGGILESNYGKLQKVGWERSSRTDKGV 487
            + IESVLE+AIFKAGGILESNYGKLQKVGWERSSRTDKGV
Sbjct: 909  AAIESVLETAIFKAGGILESNYGKLQKVGWERSSRTDKGV 1028



 Score = 84.9 bits (179), Expect(9) = 0.0
 Identities = 33/46 (71%), Positives = 39/46 (84%)
 Frame = +2 / +1

                                                          
Query: 779  GNHPFHNYTARAKYRKVLAGAHRRAKETSTAAHSIPSEMVADQSTS 916
            GNHPFHNYTARAKYRKVLAG HR+ K  S+A +S+P+EM  DQS+S
Sbjct: 2347 GNHPFHNYTARAKYRKVLAGRHRKVKGASSAVNSMPTEMSLDQSSS 2484



 Score = 64.3 bits (134), Expect(9) = 0.0
 Identities = 25/27 (92%), Positives = 26/27 (96%)
 Frame = +2 / +3

                                      
Query: 260 GGMRWESTRKKRVVLRVGYVGSEYRGL 340
           GGMRWES RKKRVVLRVGYVG+EYRGL
Sbjct: 228 GGMRWESARKKRVVLRVGYVGTEYRGL 308



 Score = 49.2 bits (101), Expect(9) = 0.0
 Identities = 17/28 (60%), Positives = 22/28 (78%)
 Frame = +2 / +3

                                       
Query: 80  SSWLLWRPFSSTILTRCTNPRLLRTTLC 163
           ++W LWRP+SS +L+R  NPR LRTT C
Sbjct: 63  ATWRLWRPYSSALLSRRVNPRFLRTTPC 146



 Score = 26.3 bits (51), Expect(9) = 0.0
 Identities = 10/13 (76%), Positives = 12/13 (92%)
 Frame = +2 / +3

                        
Query: 335 GLQKQRDLSGDST 373
           GLQKQR+LS DS+
Sbjct: 402 GLQKQRELSADSS 440



 Score =  239 bits (517), Expect(11) = e-167
 Identities = 114/157 (72%), Positives = 123/157 (78%)
 Frame = -1 / -3

                                                                        
Query: 1623 IKTY*PLPVFFRAIFTRS*SSFHAR*AVLTSSN*ESGMLVKWSKFSTHSCHGGRDSSRNF 1444
            + T * L   F AIFTRS*S+FH  *A+LTSS+  SGMLV  SKFSTHS HGG D+SR F
Sbjct: 3622 LATN*SLLALFLAIFTRS*SAFHTL*ALLTSSSCGSGMLVNRSKFSTHSFHGGMDASRKF 3443

                                                                        
Query: 1443 ASSGTRATL*NSITPFLISSDSLIDCMPGRTILPCLFLVQKLLSLRIRTSEGAIGKTMRE 1264
            ASSGTRA L*NSITPFL SSDS ID +PGRTI+PCLFL QKLLSL  +TSEGAIG TMRE
Sbjct: 3442 ASSGTRAAL*NSITPFLTSSDSFIDWIPGRTIVPCLFLRQKLLSLSTKTSEGAIGNTMRE 3263

                                                 
Query: 1263 NFASESFIISLGSNPRFTATAVPTIFRI*CSIKDTPH 1153
            NFA +S IISLGSNPR TAT VPTIFRI*   K   H
Sbjct: 3262 NFARDSAIISLGSNPRLTATEVPTIFRI*GQKKKKHH 3152



 Score = 98.2 bits (208), Expect(11) = e-167
 Identities = 44/50 (88%), Positives = 45/50 (90%)
 Frame = -1 / -1

                                                              
Query: 633  L*AGKILKTLILSGKFELIKFARAMPSGSFSHARSGISILSEIIVASECT 484
            L*AGK LKTL LSGKFEL+KF RAMPSGSFSHARSGISI  EIIVASECT
Sbjct: 1287 L*AGKTLKTLTLSGKFELMKFERAMPSGSFSHARSGISIFREIIVASECT 1138



 Score = 89.0 bits (188), Expect(11) = e-167
 Identities = 41/49 (83%), Positives = 42/49 (85%)
 Frame = -1 / -1

                                                             
Query: 777  SKPFSMLLNSIKCSSTSPELQLLLIPIISAGRR*KYSRYKHSLLTSKLL 631
            SKPF MLLNS +CS TS ELQ  LIPIISAGRR KYSRYKHSLLTSKLL
Sbjct: 1527 SKPFRMLLNSDRCSITSSELQPPLIPIISAGRRYKYSRYKHSLLTSKLL 1381



 Score = 77.6 bits (163), Expect(11) = e-167
 Identities = 34/46 (73%), Positives = 34/46 (73%)
 Frame = -1 / -2

                                                          
Query: 915  EVLWSATISEGMECAAVLVSLALRCAPARTFLYLARAV*L*NGWFP 778
            E LWS  IS GME  A L    LRC PARTFLYLARAV*L*NGWFP
Sbjct: 2483 EELWSKLISVGMEFTAELAPFTLRCLPARTFLYLARAV*L*NGWFP 2346



 Score = 75.8 bits (159), Expect(11) = e-167
 Identities = 33/38 (86%), Positives = 35/38 (92%)
 Frame = -1 / -3

                                                  
Query: 486  TPLSVRLLRSQPTFCNFP*LLSRMPPALKMADSKTDSM 373
            TPLSV LL SQPTFC+FP*LLSRMPPALKMA SKTDS+
Sbjct: 1027 TPLSVLLLLSQPTFCSFP*LLSRMPPALKMAVSKTDSI 914



 Score = 74.4 bits (156), Expect(11) = e-167
 Identities = 37/64 (57%), Positives = 42/64 (65%)
 Frame = -2 / -3

                                                                        
Query: 1178 DVA*KILHISSVPQIELLMNSATLHMSR*GYL*SVMHLVYHCH*AHGAI*LEFAHDSEAV 999
            D A*KIL I S+PQIE LM S  LH   *GYL*+V H V H H AH A *LE    S+ +
Sbjct: 2761 DAA*KILLI*SIPQIEFLMKSGALHRRM*GYL*NVKHSVDHFHQAHEAT*LESEPASQKI 2582

                
Query: 998  QDYP 987
            +DYP
Sbjct: 2581 RDYP 2570



 Score = 42.3 bits (86), Expect(11) = e-167
 Identities = 21/38 (55%), Positives = 22/38 (57%)
 Frame = -1 / -3

                                                 
Query: 198 APRAGAEAEWEKHRVVRRSLGFVHRVRIVEEKGLQRSH 85
           A  A A    E H VVRR+LGF  R R  EE GLQR H
Sbjct: 181 AAEAAAPPG*ETHGVVRRNLGFTRRERRAEE*GLQRRH 68



 Score = 32.2 bits (64), Expect(11) = e-167
 Identities = 15/29 (51%), Positives = 19/29 (65%)
 Frame = -2 / -3

                                         
Query: 983  YNCLLVH*NQVLMESLNIHHLHWKCFGPQ 897
            YNCLLVH*NQ+  +S ++ H   K F  Q
Sbjct: 2569 YNCLLVH*NQLSTKSSSLLHHGLK*FRHQ 2483



 Score = 28.1 bits (55), Expect(11) = e-167
 Identities = 11/15 (73%), Positives = 13/15 (86%)
 Frame = -1 / -3

                          
Query: 378 SMVESPLRSRCF*RP 334
           S++ES L SRCF*RP
Sbjct: 445 SLLESALSSRCF*RP 401



 Score = 26.3 bits (51), Expect(11) = e-167
 Identities = 11/15 (73%), Positives = 12/15 (80%)
 Frame = -3 / -2

                          
Query: 340 KTSVFAADVADAEHD 296
           +TSV  ADVA AEHD
Sbjct: 308 QTSVLRADVAYAEHD 264



 Score = 25.8 bits (50), Expect(11) = e-167
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = -1 / -3

                                        
Query: 279 DSHLIPPLPALEQXXXXXXXXXGCKEAAP 193
           DSHLIPP  + EQ           + AAP
Sbjct: 247 DSHLIPPPQSSEQVVASGGEGGAAEAAAP 161



 Score =  217 bits (469), Expect(6) = e-140
 Identities = 98/150 (65%), Positives = 110/150 (73%)
 Frame = -3 / -2

                                                                        
Query: 1612 LATSSILSSHFYPVVIVFPCSISCPNFIQLRIWYAGEVVQVLHPFLPRRQGFIQEFC*LG 1433
            L  +  LS HFY VV+ FP  IS PNF+QL IWYA E VQVLHPF P R G IQE C*L 
Sbjct: 3611 LVAAGTLSGHFYSVVVRFPHPISAPNFLQLWIWYARESVQVLHPFFPWRHGCIQEVC*LW 3432

                                                                        
Query: 1432 HKSHLVEFHYTLLDFFRFIN*LHARTNNTPLLVPCAETVISKDQNFRGRDW*NDARKLCK 1253
            +KS  VEFHY LLDFFRFI+*L  R N +PLLVP AETVISK QNFR  +W*++ARKLCK
Sbjct: 3431 NKSCPVEFHYPLLDFFRFIH*LDPRANYSPLLVPQAETVISKHQNFRRGNW*HNARKLCK 3252

                                          
Query: 1252 *KFYNILG**SALHCHRGTNHFPDLM*HKR 1163
             + YNI G**S L+ HR TNH PDL   K+
Sbjct: 3251 RQCYNIFG**STLNRHRSTNHLPDLRSKKK 3162



 Score = 90.4 bits (191), Expect(6) = e-140
 Identities = 37/50 (74%), Positives = 43/50 (86%)
 Frame = -3 / -3

                                                              
Query: 634  PLSRQDTENFDIIW*IRVNKVRKSNAIRILLPCSIRDFHLK*DHCSQ*MY 485
            PLSRQ+TEN +I+W I VN+V KSNAIRI+LPCSIRDFH + DHC Q*MY
Sbjct: 1288 PLSRQNTENSNIVWQI*VNEV*KSNAIRIILPCSIRDFHFQRDHCGQ*MY 1139



 Score = 84.9 bits (179), Expect(6) = e-140
 Identities = 43/68 (63%), Positives = 51/68 (75%)
 Frame = -3 / -1

                                                                        
Query: 1180 LM*HKRYSTYRQFHKLNS**TLQLST*AGEDISEV*CT*SIIVIRLMEPSSLNLHTTLRQ 1001
            LM H+RYS Y QFHKLNS** L+LST   EDISE+*   SII IRLM+P S NL+  LR+
Sbjct: 2763 LMQHERYS*YSQFHKLNS**NLELSTGECEDISEM*SIQSIIFIRLMKPPSSNLNLLLRK 2584

                    
Query: 1000 FRIIHLTI 977
            F II +T+
Sbjct: 2583 FGIILITV 2560



 Score = 78.5 bits (165), Expect(6) = e-140
 Identities = 33/49 (67%), Positives = 39/49 (79%)
 Frame = -3 / -3

                                                             
Query: 778  LKTFQYVIEFN*VLLHFSRATTAFNSNNFSRQKIEVLPVQAFPPYIKTP 632
            LKTFQ  IEF  V  +F RATT FNSN FSR+KI+V P+QAFPP+I+TP
Sbjct: 1528 LKTFQNAIEF*QVFHYFFRATTTFNSNYFSRKKIQVFPIQAFPPHIETP 1382



 Score = 74.4 bits (156), Expect(6) = e-140
 Identities = 28/48 (58%), Positives = 31/48 (64%)
 Frame = -2 / -3

                                                            
Query: 920  HWKCFGPQPFRREWNALLCLFLWPFGVLQLELFYTWHEQCNYEMGGFP 777
            H + FGP  F+  WN  L L L P+    LEL YTWHEQCNYEM GFP
Sbjct: 2488 HQRSFGPNSFQWAWNLQLSLPLLPYDAFLLELSYTWHEQCNYEMDGFP 2345



 Score = 73.9 bits (155), Expect(6) = e-140
 Identities = 31/38 (81%), Positives = 32/38 (84%)
 Frame = -3 / -2

                                                  
Query: 487  YPFISSAAPFPTNFLQLSIITLKNAPCLEDGRFQN*LN 374
            YPFISS  PFP NFLQL IITLKNAP LEDG FQ+*LN
Sbjct: 1028 YPFISSTTPFPANFLQLPIITLKNAPSLEDGCFQD*LN 915



 Score =  211 bits (456), Expect(7) = e-124
 Identities = 97/147 (65%), Positives = 107/147 (72%)
 Frame = +3 / +1

                                                                        
Query: 1176 IRSGKWLVPRWQ*SADYYPRIL*NFHLQSFLASFYQSRPLKF*SLEITVSAQGTSKGVLF 1355
            +RSG+WLV RW+ S DYYP+IL*+  LQSFLA  YQ   LKF  LEITVSA GTSKG+ F
Sbjct: 3175 LRSGRWLVLRWRLSVDYYPKIL*HCLLQSFLALCYQLPLLKFWCLEITVSA*GTSKGL*F 3354

                                                                        
Query: 1356 VLACSQLMNLKKSRRV*WNSTRWLLCPS*QNSWMNPCLRGKNGWRTWTTSPAYQILSWMK 1535
             L  +Q MNLKKSRR *WNST  LL  S*Q SWM+PCL GKNGWRTWT S AYQI SW K
Sbjct: 3355 ALGSNQ*MNLKKSRRG*WNSTGQLLFQS*QTSWMHPCLHGKNGWRTWTDSRAYQIHSWRK 3534

                                       
Query: 1536 LGQLIEHGKTITTG*KWLERILEVANM 1616
            LG LI  GK  TT *KW ER+    N+
Sbjct: 3535 LGALIGCGKRTTTE*KWPERVPAATNL 3615



 Score = 89.0 bits (188), Expect(7) = e-124
 Identities = 43/71 (60%), Positives = 49/71 (69%)
 Frame = +3 / +2

                                                                        
Query: 990  IILNCLRVVCKFKLDGSMSLMTMID*VHHTSEISSPAHVESCRVHQEFNLWN*RYVEYLL 1169
            II N LR   +F+L G MSLM MID*+ H SEISS + VES R HQEFNLWN* Y EYL 
Sbjct: 2573 IIPNFLRSRFRFELGGFMSLMKMID*MLHISEISSHSPVESSRFHQEFNLWN*LYQEYLS 2752

                       
Query: 1170 CYIRSGKWLVP 1202
            C IR  + + P
Sbjct: 2753 CCIRYAQEVTP 2785



 Score = 79.9 bits (168), Expect(7) = e-124
 Identities = 35/50 (70%), Positives = 41/50 (82%)
 Frame = +1 / +1

                                                              
Query: 484  GTFTGYNDLT*DGNP*SSMGEGS*WHCSCELY*LEFTR*YQSFQYLACSK 633
            GTFTG+NDL+ +GNP*SSMGE S*WHCS +L+*L+F R   SFQ  ACSK
Sbjct: 1138 GTFTGHNDLSENGNP*SSMGE*S*WHCSFKLH*LKFARQC*SFQCFACSK 1287



 Score = 73.9 bits (155), Expect(7) = e-124
 Identities = 36/60 (60%), Positives = 44/60 (73%)
 Frame = +1 / +1

                                                                        
Query: 628  SKEF*CKEGMLVPGVLLSSAC*NYWN*KQL*LWRSGGALN*IQ*HTERF*GKPPIS*LHC 807
            S+EF C+EGMLV G+L+SS+C*N WN*+ L*L RS G    IQ*H+ERF*G   I  + C
Sbjct: 1378 SQEFRCEEGMLVSGILVSSSC*NNWN*RWL*L*RSNGTPVRIQ*HSERF*GMCMIKYIAC 1557



 Score = 67.5 bits (141), Expect(7) = e-124
 Identities = 29/39 (74%), Positives = 29/39 (74%)
 Frame = +3 / +1

                                                   
Query: 369  QPLSQFWNLPSSRQGAFLRVIMESCKKLVGNGAAELIKG 485
            Q LSQ W  PSSR GAFLRVIM SCKKL G G  ELIKG
Sbjct: 910  QQLSQSWKQPSSRLGAFLRVIMGSCKKLAGKGVVELIKG 1026



 Score = 34.1 bits (68), Expect(7) = e-124
 Identities = 16/31 (51%), Positives = 20/31 (64%)
 Frame = +1 / +2

                                          
Query: 205 FTANLASSSAYDLLQRWKWRDEVGVYAEEEG 297
           F     +S+ + LL+R   RDEVGV AEEEG
Sbjct: 173 FCGATLASACHHLLRRLGRRDEVGVRAEEEG 265



 Score = 30.4 bits (60), Expect(7) = e-124
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +1 / +2

                                   
Query: 85  VASLETLLFHYPHTVHEPQAPPYH 156
           VA LE LL   P +  EP+ PPY+
Sbjct: 68  VAPLEALLLRSPLSPGEPEVPPYY 139



 Score =  190 bits (410), Expect(5) = e-104
 Identities = 93/149 (62%), Positives = 105/149 (70%)
 Frame = -2 / -1

                                                                        
Query: 1619 RHISHFQYSFEPFLPGRNRLSMLDKLS*LHPTENLVCW*SGPSSPPILATEAGIHPGILL 1440
            + IS   +SF PFL GR+ LS   K S*L P  +LVC * GPSSPPIL+ EA +HPG LL
Sbjct: 3618 QQISRCWHSFWPFLLGRSPLSTPYKRS*LPPAVDLVCS*IGPSSPPILSMEAWMHPGSLL 3439

                                                                        
Query: 1439 ARAQEPPCRIPLHPS*FLQIH*LTACQDEQYSLACSLCRNCYL*GSELQRARLVKRCEKT 1260
            A  QE PCRIPL PS* LQIH L   Q E  SLACS  RNCYL*  +LQ+ +LV +CEKT
Sbjct: 3438 ALEQELPCRIPLPPS*LLQIHSLIGSQGEL*SLACSSGRNCYL*APKLQKGQLVTQCEKT 3259

                                         
Query: 1259 LQVKVL*YPWVVIRASLPPRYQPFSGSDV 1173
            LQ  VL*Y WVVI A  PP+YQP SGS+V
Sbjct: 3258 LQETVL*YLWVVIHA*PPPKYQPSSGSEV 3172



 Score = 74.8 bits (157), Expect(5) = e-104
 Identities = 36/58 (62%), Positives = 38/58 (65%)
 Frame = -2 / -2

                                                                      
Query: 806  QCNYEMGGFPQNLSVCY*IQLSAPPLLQSYNCF*FQ*FQQAEDRSTPGTSIPSLHQNS 633
            Q  Y +   PQNLS CY*I    P LLQSYN  *FQ FQQ ED S P TSIPS H+NS
Sbjct: 1556 QAIYLIIHIPQNLSECY*ILTGVPLLLQSYNHL*FQLFQQEEDTSIPDTSIPSSHRNS 1383



 Score = 72.1 bits (151), Expect(5) = e-104
 Identities = 28/42 (66%), Positives = 32/42 (76%)
 Frame = -2 / -1

                                                      
Query: 488  VPLYQFGCSVPNQLFATFHNYSQECPLP*RWQIPKLTQWLNR 363
            +PLYQF  S P+QLFA  HNYSQECP P*RW  P+LTQ L +
Sbjct: 1029 LPLYQFYYSFPSQLFAASHNYSQECPQP*RWLFPRLTQLLRK 904



 Score = 71.6 bits (150), Expect(5) = e-104
 Identities = 33/51 (64%), Positives = 38/51 (74%)
 Frame = -2 / -2

                                                               
Query: 635  SFEQARY*KL*YYLVNXXXXXSQEQCHQDPSPMLDQGFPS*VRSL*PVNVP 483
            +FEQA++*KL*+ L N      +EQCHQD SPMLDQGFP   RSL PVNVP
Sbjct: 1289 TFEQAKH*KL*HCLANLS**SLKEQCHQDHSPMLDQGFPFSERSLWPVNVP 1137



 Score = 65.7 bits (137), Expect(5) = e-104
 Identities = 27/37 (72%), Positives = 32/37 (86%)
 Frame = -1 / -2

                                                 
Query: 1179 *CSIKDTPHIVSSTN*TPDELCNSPHEQVRISLKCDA 1069
            *CS+KDTP IV+STN* PDE+ +SP E VRISLKC+A
Sbjct: 2762 *CSMKDTPDIVNSTN*IPDEIWSSPQENVRISLKCEA 2652



 Score =  181 bits (390), Expect(8) = 3e-94
 Identities = 79/118 (66%), Positives = 91/118 (77%)
 Frame = +1 / +2

                                                                        
Query: 1165 FYATSDPENGWYRGGSEARITTQGYYKTFTCKVFSHRFTNRAL*SSDP*R*QFLHKEQAR 1344
            F+ TSDPE+GWY GG  A ITTQ YY T +CKVFSH  TN   *S   *R*QFL +EQAR
Sbjct: 3164 FFLTSDPEDGWYFGGG*AWITTQRYYSTVSCKVFSHCVTNCPF*SFGA*R*QFLPEEQAR 3343

                                                                      
Query: 1345 EYCSSWHAVN**I*RNQEGCNGILQGGSCARASKIPG*IPASVARMGGELGPLHQHTR 1518
            +Y S W  +N *I*R+QEG NGILQG SC+RASK+PG I AS+ RMGGELGP+H+HTR
Sbjct: 3344 DYSSPWDPINE*I*RSQEGGNGILQGSSCSRASKLPGCIHASMERMGGELGPIHEHTR 3517



 Score = 77.6 bits (163), Expect(8) = 3e-94
 Identities = 34/57 (59%), Positives = 46/57 (80%)
 Frame = +1 / +3

                                                                     
Query: 1009 ESCANSS*MAP*A**Q**TKCITLQRYPHLLMWRVAEFIRSSICGTDDMWSIFYATS 1179
            E+ ++SS*+A *A**+* T+C T QRYPH+L+WR  +FIR+SICG D + SIF+A S
Sbjct: 2592 EAGSDSS*VAS*A**K*STECFTFQRYPHILLWRAPDFIRNSICGIDYIRSIFHAAS 2762



 Score = 59.3 bits (123), Expect(8) = 3e-94
 Identities = 28/39 (71%), Positives = 31/39 (79%)
 Frame = +1 / +2

                                                   
Query: 370  NH*VSFGICHLQGRGHS*E*LWKVAKSWLGTEQPN**RG 486
            ++*VS G  HLQG GHS*E*LW+ AKSWLG E  N**RG
Sbjct: 911  SN*VSLGNSHLQGWGHS*E*LWEAAKSWLGKE**N**RG 1027



 Score = 57.4 bits (119), Expect(8) = 3e-94
 Identities = 27/44 (61%), Positives = 30/44 (68%)
 Frame = +1 / +3

                                                        
Query: 778  GKPPIS*LHCSCQV*KSSSWSTPKGQRNKHSSAFHSLRNGCGPK 909
            GKP IS*LHCSCQV*+SSS     G+R K S  FH+  N  GPK
Sbjct: 2346 GKPSIS*LHCSCQV*ESSSRKAS*GKRGKLSCKFHAH*NEFGPK 2477



 Score = 39.1 bits (79), Expect(8) = 3e-94
 Identities = 15/19 (78%), Positives = 16/19 (84%)
 Frame = +3 / +3

                               
Query: 486  YIHWLQ*SHLRWKSLIEHG 542
            YIHW Q*S  +WKSLIEHG
Sbjct: 1140 YIHWPQ*SL*KWKSLIEHG 1196



 Score = 33.6 bits (67), Expect(8) = 3e-94
 Identities = 13/19 (68%), Positives = 15/19 (78%)
 Frame = +3 / +3

                               
Query: 627  LKGVLM*GGNACTGSTSIF 683
            + GV M*GGNAC G+T IF
Sbjct: 1377 ISGVSM*GGNACIGNTCIF 1433



 Score = 29.0 bits (57), Expect(8) = 3e-94
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +1 / +2

                                 
Query: 1555 MERRLRPGKNGSKEYWKWLIC 1617
            +E  LRP KNG KE  + LIC
Sbjct: 3554 VESGLRPSKNGQKECQQRLIC 3616



 Score = 26.3 bits (51), Expect(8) = 3e-94
 Identities = 13/22 (59%), Positives = 14/22 (63%)
 Frame = +3 / +1

                                 
Query: 87  GFSGDPSLPLSSHGARTPGSSV 152
           G SG P+ PLSS    T GSSV
Sbjct: 70  GASGGPTPPLSSLAG*TRGSSV 135



 Score = 60.6 bits (126), Expect = 3e-08
 Identities = 28/45 (62%), Positives = 34/45 (75%)
 Frame = -3 / -1

                                                         
Query: 910  ALVRNHFGGNGMRCCACFFGPSVCSS*NFSILGTSSVIMKWVVSL 776
            ALV+ HF G+G+   AC F  ++ S *NF ILGTSSVIMKW+VSL
Sbjct: 2478 ALVQTHFSGHGIYS*ACPFYLTMPSC*NFPILGTSSVIMKWMVSL 2344



 Score = 51.9 bits (107), Expect(2) = 5e-07
 Identities = 29/45 (64%), Positives = 30/45 (66%)
 Frame = +3 / +2

                                                         
Query: 777  RETTHFIITLLVPSIEKF*LEHTEGPKKQAQQRIPFPPKWLRTKA 911
            RET HFIITLLVPSI KF* E     K QAQ  IP P K + TKA
Sbjct: 2345 RETIHFIITLLVPSIGKF*QEGIVR*KGQAQL*IPCPLK*VWTKA 2479



 Score = 23.1 bits (44), Expect(2) = 5e-07
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = +1 / +3

                            
Query: 937  KLSINT*F*CTRRQL* 984
            +L ++  F*CTRRQL*
Sbjct: 2523 ELFVDNWF*CTRRQL* 2570

>LOC_Os02g44810:12002.t04071:unspliced-genomic tRNA pseudouridine synthase family protein, expressed|
          Length = 2185

 Score = 57.9 bits (120), Expect(5) = 6e-27
 Identities = 24/60 (40%), Positives = 36/60 (60%)
 Frame = +2 / +1

                                                                        
Query: 1082 RDILTCSCGELQSSSGVQFVELTICGVSFMLHQIRKMVGTAVAVKRGLLPKDIIKLSLAK 1261
            R I++ +   + +  G+ F+   + G SFMLHQIRKM+G AVAV R   P+ I  ++  K
Sbjct: 1228 RFIISFAADRVVNLDGIDFIRCEVVGQSFMLHQIRKMIGLAVAVMRNCAPESIYDVAFRK 1407



 Score = 52.4 bits (108), Expect(5) = 6e-27
 Identities = 22/59 (37%), Positives = 36/59 (61%)
 Frame = +2 / +1

                                                                      
Query: 335 GLQKQRDLSGDSTIESVLESAIFKAGGILESNYGKLQKVGWERSSRTDKGVHSLATMIS 511
           G Q  +   G  TIE  LE A+++AG + E++    ++  W R++RTDKGV + A ++S
Sbjct: 181 GYQGMQKNPGARTIEGDLEEALYRAGAVPEADRAAPRRYDWARAARTDKGVSAAAQVVS 357



 Score = 36.8 bits (74), Expect(5) = 6e-27
 Identities = 13/22 (59%), Positives = 15/22 (68%)
 Frame = +2 / +1

                                  
Query: 752  FNNILKGFEGNHPFHNYTARAK 817
            FN ILK + G H FHN+T R K
Sbjct: 1141 FNRILKKYVGTHNFHNFTTRTK 1206



 Score = 34.1 bits (68), Expect(5) = 6e-27
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +2 / +1

                                                
Query: 578 INSNLPDNIKVFSILPAQRSFDVRRECLYREYFYLLP 688
           +N+ L   I+ F  +    SF+ ++ C  R Y YLLP
Sbjct: 397 LNAQLAPQIRAFGYVRVTNSFNAKKFCDRRRYVYLLP 507



 Score = 28.6 bits (56), Expect(5) = 6e-27
 Identities = 8/21 (38%), Positives = 17/21 (80%)
 Frame = +2 / +1

                                
Query: 284 RKKRVVLRVGYVGSEYRGLQK 346
           ++++V + +GY G+ Y+G+QK
Sbjct: 139 KRRKVAILLGYCGAGYQGMQK 201

>LOC_Os01g71080:12001.t06405:unspliced-genomic xylanase inhibitor TAXI-IV, putative, expressed|
          Length = 1463

 Score = 37.3 bits (75), Expect = 0.37
 Identities = 17/31 (54%), Positives = 18/31 (58%)
 Frame = +1 / -2

                                           
Query: 1387 RNQEGCNGILQGGSCARASKIPG*IPASVAR 1479
            R    C GI  GGSCARA +  G  PAS AR
Sbjct: 352  RGHSHCGGIPAGGSCARACRSGGGTPASGAR 260

>LOC_Os03g15130:12003.t01299:unspliced-genomic hypothetical protein|
          Length = 309

 Score = 36.8 bits (74), Expect = 0.51
 Identities = 15/40 (37%), Positives = 25/40 (62%)
 Frame = +2 / +1

                                                    
Query: 1427 LVPELAKFLDESLPPWQEWVENLDHFTSIPDSQLDEVRTA 1546
            L+P LA +   SLPP   W  ++ H +S+P ++ + +RTA
Sbjct: 67   LLPPLAPWQCLSLPPVSGWRSDIGHTSSLPPTESNHLRTA 186

>LOC_Os09g07770:12009.t00573:unspliced-genomic conserved hypothetical protein|
          Length = 733

 Score = 35.9 bits (72), Expect = 0.95
 Identities = 13/31 (41%), Positives = 15/31 (48%)
 Frame = +3 / +1

                                           
Query: 1413 STRWLLCPS*QNSWMNPCLRGKNGWRTWTTS 1505
            + RWL     +  W  PCLR    WR WT S
Sbjct: 379  TARWLGVRQQRLRWW*PCLRSPEAWRPWTAS 471

>LOC_Os01g23180:12001.t02045:unspliced-genomic retrotransposon protein, putative, unclassified|
          Length = 2530

 Score = 35.9 bits (72), Expect = 0.95
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = +2 / +3

                                                    
Query: 251 AGSGGMRWESTRKKRVVLRVGYVGSEYRGLQKQRDLSGDST 373
           A  GGMRW +TR+      +G  G+  RGL       G+ T
Sbjct: 357 AARGGMRWAATRRHGATATIGRRGAARRGLDGDGQRRGEGT 479

>LOC_Os03g03334:12003.t005769:unspliced-genomic expressed protein|
          Length = 497

 Score = 35.4 bits (71), Expect = 1.3
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = +2 / -3

                                        
Query: 77  TSSWLLWRPFSSTILTRCTNPRLLRTTLC 163
           T  WLLWR F ST  T CT    +   +C
Sbjct: 270 TRMWLLWRAFKSTEATECTAADTILALIC 184

>LOC_Os02g24120:12002.t02110:unspliced-genomic hypothetical protein|
          Length = 1939

 Score = 35.0 bits (70), Expect = 1.8
 Identities = 16/51 (31%), Positives = 25/51 (49%)
 Frame = -3 / +1

                                                               
Query: 1612 LATSSILSSHFYPVVIVFPCSISCPNFIQLRIWYAGEVVQVLHPFLPRRQG 1460
            LAT+  L+S   P+V+    +       +L  W+     Q+LHP L +R G
Sbjct: 16   LATAPSLASSALPLVVSASAAAPSTRLAELLPWWVASSPQLLHPLLRKRLG 168

>LOC_Os05g50140:12005.t04446:unspliced-genomic auxin efflux carrier component 3b, putative, expressed|
          Length = 2868

 Score = 34.1 bits (68), Expect = 3.4
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = +3 / +2

                                                          
Query: 981  VRWIILNCLRVVCKFKLDGSMSLMTMID*VHHTSEISSPAHVESCR 1118
            VRW + +   +VC+F +D  M    ++   HH +  SS  ++ S R
Sbjct: 1583 VRWKLDSEFLIVCQFSVDAVMGNFALVQVPHHDANHSSQINLHSLR 1720

>LOC_Os01g61410:12001.t05520:unspliced-genomic rotenone-insensitive NADH-ubiquinone oxidoreductase, mitochondrial|
            precursor, putative, expressed
          Length = 4245

 Score = 34.1 bits (68), Expect = 3.4
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = -2 / +3

                                                  
Query: 1508 W*SGPSSPPILATEAGIHPGILLARAQEPPCRIPLHPS 1395
            W S  SSPP  +  +   P   L+RA  PPC  P  P+
Sbjct: 471  WCSRRSSPPPASARSSSAPSPSLSRASSPPCPSPPAPT 584

>LOC_Os07g03160:12007.t00206:unspliced-genomic ubiquitin homeostasis protein lub1, putative, expressed|
          Length = 9263

 Score = 33.6 bits (67), Expect = 4.7
 Identities = 13/56 (23%), Positives = 26/56 (46%)
 Frame = +3 / -3

                                                                    
Query: 855  KKQAQQRIPFPPKWLRTKALPVQMMNI*TFHQYLILVHEKTIVRWIILNCLRVVCK 1022
            KK     +  P +W+  K +  +++    +H   I   E  +    + NC+R++CK
Sbjct: 5595 KKTYTSSVGVPKRWIWNKIILARIL*YKFYHLLAICQREILLQEPFVRNCIRIICK 5428

>LOC_Os02g34320:12002.t03071:unspliced-genomic DNA binding protein, putative|
          Length = 3429

 Score = 33.6 bits (67), Expect = 4.7
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -3 / +2

                                              
Query: 880  GMRCCACFFGPSVCSS*NFSILGTSSVIMKWVVS 779
            G+  CA  FG S C S*NF +LG     + +  S
Sbjct: 1931 GVMWCASLFGSSSCES*NFVVLGLILATLAYTTS 2032

>LOC_Os04g39960:12004.t03561:unspliced-genomic hypothetical protein|
          Length = 849

 Score = 33.1 bits (66), Expect = 6.4
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +3 / +2

                            
Query: 1461 PCLRGKNGWRTWTTSP 1508
            P LRG+  WR WT+SP
Sbjct: 122  PSLRGETSWRAWTSSP 169

>LOC_Os02g37350:12002.t03373:unspliced-genomic conserved hypothetical protein|
          Length = 825

 Score = 33.1 bits (66), Expect = 6.4
 Identities = 12/31 (38%), Positives = 14/31 (45%)
 Frame = +3 / +2

                                           
Query: 1410 NSTRWLLCPS*QNSWMNPCLRGKNGWRTWTT 1502
            +  RWL     +  W  PCLR    WR W T
Sbjct: 731  SGARWLGVREPRMWWW*PCLRSPEAWRPWLT 823

>LOC_Os08g26380:12008.t02404:unspliced-genomic hypothetical protein|
          Length = 456

 Score = 29.9 bits (59), Expect(2) = 7.8
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = +2 / +1

                                                     
Query: 1373 INESEEIKKGVMEFYKVALVPELAKFLDESLPPWQEWVENL 1495
            I+ S +IKK   +F K      +A     SLPPWQ   + L
Sbjct: 118  ISLSPKIKKTQRKFKKTLANEPIALSSSSSLPPWQSRAQGL 240



 Score = 23.1 bits (44), Expect(2) = 7.8
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +3 / +2

                               
Query: 834 LEHTEGPKKQAQQRIPFPPK 893
           L+ T GPK++     PFP K
Sbjct: 77  LQTTFGPKQEPISIFPFPQK 136

>LOC_Os11g03380:12011.t00228:unspliced-genomic expressed protein|
          Length = 4638

 Score = 32.7 bits (65), Expect = 8.8
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +2 / -1

                                               
Query: 1079 FRDILTCSCGELQSSSGVQFVELTICGVSFMLHQI 1183
            F   LT +C  L         ELTIC + F+LHQ+
Sbjct: 4446 FHQKLTANCSWLIKIHKASSSELTICTIHFLLHQL 4342

>LOC_Os10g39620:12010.t03205:unspliced-genomic ubiquilin-1, putative, expressed|
          Length = 5254

 Score = 32.7 bits (65), Expect = 8.8
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +3 / +1

                                       
Query: 1443 QNSWMNPCLRGKNGWRTWTTSPAYQIL 1523
            +N W   C  G + W++W  + AYQ L
Sbjct: 4555 RNCWECECCGGASSWQSWPVAKAYQTL 4635

>LOC_Os08g41550:12008.t03884:unspliced-genomic expressed protein|
          Length = 5569

 Score = 32.7 bits (65), Expect = 8.8
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = +2 / -3

                                                       
Query: 992  NPELPQSRVQIQARWLHEPNDNDRLSASHFRDILTCSCGELQS 1120
            N E PQ  +Q     +  P+DN  +     R + TC C + QS
Sbjct: 1874 NKEAPQQCIQASVSLIRYPSDNTAMPVRRPRCMRTCLCVDCQS 1746

>LOC_Os07g35140:12007.t03189:unspliced-genomic receptor-like serine-threonine protein kinase, putative, expressed|
          Length = 5369

 Score = 32.7 bits (65), Expect = 8.8
 Identities = 11/24 (45%), Positives = 19/24 (79%)
 Frame = +3 / -2

                                    
Query: 978  IVRWIILNCLRVVCKFKLDGSMSL 1049
            ++RWIIL+C R+  +F+L+  M+L
Sbjct: 1300 LIRWIILSCHRLYSEFELNKKMTL 1229

>LOC_Os07g07820:12007.t00660:unspliced-genomic expressed protein|
          Length = 6324

 Score = 32.7 bits (65), Expect = 8.8
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = +3 / -2

                              
Query: 1452 WMNPCLRGKNGWRTWTTS 1505
            W  PCLR    WR W TS
Sbjct: 2531 WW*PCLRSSEAWRPWLTS 2478

>LOC_Os09g15170:12009.t01307:unspliced-genomic permease, putative, expressed|
          Length = 5175

 Score = 32.7 bits (65), Expect = 8.8
 Identities = 11/22 (50%), Positives = 17/22 (77%)
 Frame = -1 / +1

                                  
Query: 1485 THSCHGGRDSSRNFASSGTRAT 1420
            T  CHGGRDS R+ A++G +++
Sbjct: 4732 TGECHGGRDSGRSEATAGMKSS 4797


  Database: tigr.seq.out
    Posted date:  Jul 20, 2007  8:58 AM
  Number of letters in database: 166,841,660
  Number of sequences in database:  56,278
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Sequences: 56278
Number of Hits to DB: 749,150,379
Number of extensions: 12005979
Number of successful extensions: 38835
Number of sequences better than 10.0: 21
Length of query: 628
Length of database: 55,613,886
Length adjustment: 51
Effective length of query: 577
Effective length of database: 52,743,708
Effective search space: 30433119516
Effective search space used: 30433119516
Neighboring words threshold: 13
Window for multiple hits: 40
X1: 16 ( 7.3 bits)