>Q9ZU95:NUD17_ARATH Nudix hydrolase 17, mitochondrial precursor - Arabidopsis thaliana|
           (Mouse-ear cress)
          Length = 182
 Score =  135 bits (341), Expect = 2e-31
 Identities = 69/166 (41%), Positives = 94/166 (56%), Gaps = 3/166 (1%)
 Frame = +1

Query: 100 IPRMAVLVARQGRELQRYSASTGGRIVVGCIPYXXXXXXXXXXXXXXX---ISSQKGHGM 270
           + +M  L +R GR+ QRY+   G R VVGC+PY                  ISSQKGH +
Sbjct: 3   VEKMVCLASRTGRQFQRYNK--GRRQVVGCVPYRFKLSNDGKISDEVEVLVISSQKGHAL 60

Query: 271 MFPKGGWELDESMDDXXXXXXXXXXGVSGDMGKVLGCWHYQSRRYQTTYEGIMYPLRVTH 450
           MFPKGGWELDES+++          GV G++   LG W + S+   T YEG+M+P+ VT 
Sbjct: 61  MFPKGGWELDESVEEAASRECLEEAGVLGNVEHQLGKWDFLSKSRGTYYEGLMFPMLVTE 120

Query: 451 ELQQWPEMASRNRTWATVQQVMEGCQHCWMREALEELVSRHAKPQS 588
           +L+ WPE   R R W  V +  E C+  WM+EAL+ LV R + P +
Sbjct: 121 QLELWPEQHVRQRIWMNVTEAREACRDWWMKEALDVLVERLSSPMN 166

>Q9LE73:NUDT4_ARATH Nudix hydrolase 4 - Arabidopsis thaliana (Mouse-ear cress)|
          Length = 207

 Score =  133 bits (335), Expect = 1e-30
 Identities = 65/161 (40%), Positives = 96/161 (59%), Gaps = 4/161 (2%)
 Frame = +1

Query: 97  KIPRMAVLVARQGRELQRYSASTGGRIVVGCIPYXXXXXXXXXXXXXXX----ISSQKGH 264
           +I ++  LV+R GR+LQRY  + G R VVGC+PY                   +S+QKG 
Sbjct: 36  QIEKVVSLVSRTGRDLQRYDHA-GYRQVVGCVPYRYKKQEVNGVETQVIQVLLVSAQKGK 94

Query: 265 GMMFPKGGWELDESMDDXXXXXXXXXXGVSGDMGKVLGCWHYQSRRYQTTYEGIMYPLRV 444
           GM+FPKGGWE DESM++          GV+G++ + LG W Y+S+R+   ++G M+ L V
Sbjct: 95  GMLFPKGGWETDESMEEAALRETIEEAGVTGELEEKLGKWQYKSKRHSIIHDGYMFALLV 154

Query: 445 THELQQWPEMASRNRTWATVQQVMEGCQHCWMREALEELVS 567
           + E ++WPE   R R W ++ +  E CQ+ WMREALE  ++
Sbjct: 155 SQEFERWPEAEMRQRRWVSLDEAREVCQNWWMREALEAFIN 195

>Q8VY81:NUD21_ARATH Nudix hydrolase 21, chloroplast precursor - Arabidopsis thaliana|
           (Mouse-ear cress)
          Length = 198

 Score =  133 bits (335), Expect = 1e-30
 Identities = 62/160 (38%), Positives = 96/160 (60%)
 Frame = +1

Query: 106 RMAVLVARQGRELQRYSASTGGRIVVGCIPYXXXXXXXXXXXXXXXISSQKGHGMMFPKG 285
           ++  LV+R GR+LQRY+ + G R VVGC+PY                + +KG GM+ PKG
Sbjct: 40  KVVSLVSRTGRDLQRYNTA-GYRQVVGCVPYRYKKHGGGEIEVLLISAQKKGKGMLLPKG 98

Query: 286 GWELDESMDDXXXXXXXXXXGVSGDMGKVLGCWHYQSRRYQTTYEGIMYPLRVTHELQQW 465
           GWE+DES+++          GV+G + + LG W Y+S+R+   ++G M+PL V+ + + W
Sbjct: 99  GWEIDESIEEAALRETIEEAGVTGQLEESLGKWQYKSKRHTMIHDGHMFPLLVSQQFEIW 158

Query: 466 PEMASRNRTWATVQQVMEGCQHCWMREALEELVSRHAKPQ 585
           PE   R R W ++ + +E CQ+ WMREALE  ++R  + Q
Sbjct: 159 PESEFRQRKWVSLSEAIELCQNSWMREALEAFINRKCQTQ 198

>Q9LQU5:NUD18_ARATH Nudix hydrolase 18, mitochondrial precursor - Arabidopsis thaliana|
           (Mouse-ear cress)
          Length = 176

 Score =  131 bits (329), Expect = 5e-30
 Identities = 69/157 (43%), Positives = 89/157 (56%), Gaps = 3/157 (1%)
 Frame = +1

Query: 109 MAVLVARQGRELQRYSASTGGRIVVGCIPYXXXXXXXXXXXXXXX---ISSQKGHGMMFP 279
           M  LV+R GR+ QRY+   G R VVGCIPY                  ISSQKGH +MFP
Sbjct: 1   MVCLVSRTGRQSQRYNK--GRRQVVGCIPYRLKISSDGTISDEFEVLVISSQKGHALMFP 58

Query: 280 KGGWELDESMDDXXXXXXXXXXGVSGDMGKVLGCWHYQSRRYQTTYEGIMYPLRVTHELQ 459
           KGGWELDES+++          GV G++ + LG W + S+   T YEG M+P+ V  EL+
Sbjct: 59  KGGWELDESVEEAASRESLEEAGVVGNVERQLGKWDFLSKSKGTFYEGFMFPMLVKEELE 118

Query: 460 QWPEMASRNRTWATVQQVMEGCQHCWMREALEELVSR 570
            WPE   R R W  V +  + C+  WM+EAL+ LV R
Sbjct: 119 LWPEQHLRQRIWMKVDEARDACRDWWMKEALDVLVQR 155

>Q9LHK1:NUD16_ARATH Nudix hydrolase 16, mitochondrial precursor - Arabidopsis thaliana|
           (Mouse-ear cress)
          Length = 180

 Score =  104 bits (260), Expect = 5e-22
 Identities = 61/162 (37%), Positives = 84/162 (51%), Gaps = 12/162 (7%)
 Frame = +1

Query: 109 MAVLVARQGRELQRYSASTGGRIVVGCIPYXXXXXXXXXXXXXXX------ISSQKGHGM 270
           M  LVAR GR  QRY    G R+V GCIP+                     ISS  G G+
Sbjct: 1   MCDLVARTGRLQQRYE--DGSRLVAGCIPFRYVNSDKDGNSESGKVIQVLMISSSSGPGL 58

Query: 271 MFPKGGWELDESMDDXXXXXXXXXXGVSGDMGKVLGCWHYQSRRYQTTY--EGI----MY 432
           +FPKGGWE DE++ +          GV G +   LG + ++S+ +Q  +  EG+    MY
Sbjct: 59  LFPKGGWENDETVREAAAREAVEEAGVRGILMDFLGNYEFKSKSHQDEFSPEGLCKAAMY 118

Query: 433 PLRVTHELQQWPEMASRNRTWATVQQVMEGCQHCWMREALEE 558
            L V  EL  WPE  +R R W T+++ +E C+H WM++AL E
Sbjct: 119 ALYVKEELATWPEHETRTRKWLTIEEAVESCRHPWMKDALVE 160

>Q93ZY7:NUD12_ARATH Nudix hydrolase 12, mitochondrial precursor - Arabidopsis thaliana|
           (Mouse-ear cress)
          Length = 203

 Score =  100 bits (248), Expect = 1e-20
 Identities = 59/168 (35%), Positives = 87/168 (51%), Gaps = 16/168 (9%)
 Frame = +1

Query: 109 MAVLVARQGRELQRYSASTGGRIVVGCIPYXXXXXXXXXXXXXXX---------ISSQKG 261
           M+VL +R GR+ QRY  +   R+V GCIPY                        +SS   
Sbjct: 1   MSVLSSRTGRDRQRYDNNF--RLVSGCIPYRLMKADETEEDSGVDFVNKLEVLMVSSPNR 58

Query: 262 HGMMFPKGGWELDESMDDXXXXXXXXXXGVSGDMGKV-LGCWHYQSRRYQTTYE------ 420
           H ++FPKGGWE DE++ +          GV G + ++ LG W ++S+      E      
Sbjct: 59  HDLVFPKGGWEDDETVLEAASREAIEEAGVKGILRELPLGVWEFRSKSSTVEDECLGGCK 118

Query: 421 GIMYPLRVTHELQQWPEMASRNRTWATVQQVMEGCQHCWMREALEELV 564
           G M+ L+VT EL+ WPE  +R R W TV++ +E C++ WM+ ALEE +
Sbjct: 119 GYMFALKVTEELEDWPERKNRERRWLTVKEALELCRYEWMQRALEEFL 166

>Q52K88:NUD13_ARATH Nudix hydrolase 13, mitochondrial precursor - Arabidopsis thaliana|
           (Mouse-ear cress)
          Length = 202

 Score = 89.0 bits (219), Expect = 3e-17
 Identities = 57/169 (33%), Positives = 80/169 (47%), Gaps = 17/169 (10%)
 Frame = +1

Query: 109 MAVLVARQGRELQRYSASTGGRIVVGCIPYXXXXXXXXXXXXXXX--------ISSQKGH 264
           M+ L AR GR+ QRY  +   R+V GCIPY                       ISS   H
Sbjct: 1   MSNLSARTGRDHQRYDNNF--RLVSGCIPYRLVKDEEEDSTSVDFENKLQVLMISSPNRH 58

Query: 265 GMMFPKGGWELDESMDDXXXXXXXXXXGVSGDMGK-VLGCWHYQSRRYQTTYE------- 420
            ++FPKGGWE DE++ +          GV G + +  LG W ++S+      +       
Sbjct: 59  DLVFPKGGWEDDETVLEAASREAMEEAGVKGILREDPLGVWEFRSKSSSVEADCCLGGGC 118

Query: 421 -GIMYPLRVTHELQQWPEMASRNRTWATVQQVMEGCQHCWMREALEELV 564
            G M+ L V  EL  WPE   R R W  V++ +E C++ WM+ ALEE +
Sbjct: 119 KGYMFALEVKEELAIWPEQDDRERRWLNVKEALELCRYEWMQSALEEFL 167

>Q09790:APS1_SCHPO Diphosphoinositol polyphosphate phosphohydrolase aps1 -|
           Schizosaccharomyces pombe (Fission yeast)
          Length = 210

 Score = 40.8 bits (94), Expect = 0.009
 Identities = 25/88 (28%), Positives = 38/88 (43%), Gaps = 1/88 (1%)
 Frame = +1

Query: 118 LVARQGRELQRYSASTGGRIVVGCIPYXXXXXXXXXXXXXXXISSQKGH-GMMFPKGGWE 294
           + +R+GR   R++  TG R+  G +                 +SS K H   + PKGGWE
Sbjct: 24  MTSREGRTKNRFNPITGARLAAGVVALSADKRKVLL------VSSAKKHPSWVVPKGGWE 77

Query: 295 LDESMDDXXXXXXXXXXGVSGDMGKVLG 378
            DES+            G+ G + + LG
Sbjct: 78  ADESVQQAALREGWEEGGLVGHITRSLG 105

>Q99321:DDP1_YEAST Diphosphoinositol polyphosphate phosphohydrolase DDP1 -|
           Saccharomyces cerevisiae (Baker's yeast)
          Length = 188

 Score = 35.8 bits (81), Expect = 0.30
 Identities = 24/60 (40%), Positives = 27/60 (45%)
 Frame = +1

Query: 124 ARQGRELQRYSASTGGRIVVGCIPYXXXXXXXXXXXXXXXISSQKGHGMMFPKGGWELDE 303
           AR+GRE Q YS  TG R+V GCI                  SS      + PKGG E DE
Sbjct: 16  AREGRENQVYSPVTGARLVAGCI-----CLTPDKKQVLMITSSAHKKRWIVPKGGVEKDE 70

>P22605:RARB_MOUSE Retinoic acid receptor beta - Mus musculus (Mouse)|
          Length = 482

 Score = 31.2 bits (69), Expect = 7.4
 Identities = 14/43 (32%), Positives = 18/43 (41%)
 Frame = -2

Query: 620 PPAACSVVHRADCGLACRETSSSSASRIQQCWHPSMTCCTVAQ 492
           PP+ CS    A  G AC+ T+  S       W PS+      Q
Sbjct: 49  PPSGCSTPSPASVGQACQRTTGGSQFAASTKWTPSLNAAIETQ 91

>Q6ZSG1:RN165_HUMAN RING finger protein 165 - Homo sapiens (Human)|
          Length = 346

 Score = 30.8 bits (68), Expect = 9.8
 Identities = 28/84 (33%), Positives = 35/84 (41%), Gaps = 21/84 (25%)
 Frame = -1

Query: 315 VVHGLVQLPPALGE--HHAVPLLRADHQHL--------------QLALAFPLAHPVRDAP 184
           +VH    + P  G   +   P  R+ H H               QLA  FPLAHPV+  P
Sbjct: 3   LVHVGYLVLPVFGSVRNRGAPFQRSQHPHATSCRHFHLGPPQPQQLAPDFPLAHPVQSQP 62

Query: 183 ---HHDAPA--GARAVPLQLAPLP 127
               H APA   + A+   L PLP
Sbjct: 63  GLSAHMAPAHQHSGALHQSLTPLP 86


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 147,365,642
Number of extensions: 2904748
Number of successful extensions: 7728
Number of sequences better than 10.0: 11
Number of HSP's gapped: 7709
Number of HSP's successfully gapped: 11
Length of query: 351
Length of database: 100,686,439
Length adjustment: 114
Effective length of query: 237
Effective length of database: 69,416,809
Effective search space: 16451783733
Effective search space used: 16451783733
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)