| Clone Name | FLbaf19d01 |
|---|---|
| Clone Library Name | barley_pub |
>emb|CT828445.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA109P02, full insert sequence Length = 1095 Score = 456 bits (230), Expect = e-125 Identities = 401/458 (87%) Strand = Plus / Plus Query: 426 gagaagcgccatgccttcgtccacaatgggcagaaggttttcgaatgggaccagtcgctg 485 |||||||| || |||||||||||||| ||||||||||| || || |||||||| | ||| Sbjct: 319 gagaagcggcacgccttcgtccacaacgggcagaaggtctttgagtgggaccaaacactg 378 Query: 486 gaggaggtgaacatgtacatcgagctccccaagaacgtgcccaccaagctgattcagtgt 545 ||||| |||||||||||||| |||||||||||| |||||||||||||| |||| || Sbjct: 379 gaggaagtgaacatgtacattgagctccccaagggtgtgcccaccaagctctttcactgc 438 Query: 546 gtgatccaggccagccacgttgaagtcggcattcgcggccaccctccctacctcaaccat 605 | |||||||||| || ||||| |||||||| |||||| | || ||||||||||||||| Sbjct: 439 gccatccaggccactcatgttgaggtcggcatccgcggcaatccaccctacctcaaccat 498 Query: 606 gatcttatgctccccgtgaagaccgattcatctttctggacgatagaggacggtgaattg 665 || || | ||||| |||||||| |||||||| |||||||| |||||||| |||||| || Sbjct: 499 gacctgacactcccagtgaagactgattcatcattctggacaatagaggatggtgaaatg 558 Query: 666 catatcactctgcaaaaaagggaaaaggggaaaacatgggcatctccaataaaaggccaa 725 || ||||| ||||||||||| || ||||||||||||||| ||||||||||| |||||||| Sbjct: 559 cacatcacactgcaaaaaagagagaaggggaaaacatggtcatctccaatacaaggccaa 618 Query: 726 ggtagcttagatccatatgctgcagaccaggaacagaaacggcttatgctgcaaaggttt 785 ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| Sbjct: 619 ggtagcttagatccatatgctgcagaccaagaacaaaaacggcttatgctgcaaaggttt 678 Query: 786 caagaagagaatcctgggtttgacttctcgcaggctcagttcagtggtacctgccctgac 845 |||||||||||||| || || |||||||| ||||||||||||| || |||||||||||| Sbjct: 679 caagaagagaatccaggattcgacttctcccaggctcagttcaccggaacctgccctgac 738 Query: 846 ccaaggaccttcatgggtggaattcacactgattgaag 883 ||||| ||||||||||||||||||| | |||| ||||| Sbjct: 739 ccaagaaccttcatgggtggaattcgctctgactgaag 776
>ref|NM_001050348.1| Oryza sativa (japonica cultivar-group) Os01g0668000 (Os01g0668000) mRNA, complete cds Length = 1125 Score = 456 bits (230), Expect = e-125 Identities = 401/458 (87%) Strand = Plus / Plus Query: 426 gagaagcgccatgccttcgtccacaatgggcagaaggttttcgaatgggaccagtcgctg 485 |||||||| || |||||||||||||| ||||||||||| || || |||||||| | ||| Sbjct: 355 gagaagcggcacgccttcgtccacaacgggcagaaggtctttgagtgggaccaaacactg 414 Query: 486 gaggaggtgaacatgtacatcgagctccccaagaacgtgcccaccaagctgattcagtgt 545 ||||| |||||||||||||| |||||||||||| |||||||||||||| |||| || Sbjct: 415 gaggaagtgaacatgtacattgagctccccaagggtgtgcccaccaagctctttcactgc 474 Query: 546 gtgatccaggccagccacgttgaagtcggcattcgcggccaccctccctacctcaaccat 605 | |||||||||| || ||||| |||||||| |||||| | || ||||||||||||||| Sbjct: 475 gccatccaggccactcatgttgaggtcggcatccgcggcaatccaccctacctcaaccat 534 Query: 606 gatcttatgctccccgtgaagaccgattcatctttctggacgatagaggacggtgaattg 665 || || | ||||| |||||||| |||||||| |||||||| |||||||| |||||| || Sbjct: 535 gacctgacactcccagtgaagactgattcatcattctggacaatagaggatggtgaaatg 594 Query: 666 catatcactctgcaaaaaagggaaaaggggaaaacatgggcatctccaataaaaggccaa 725 || ||||| ||||||||||| || ||||||||||||||| ||||||||||| |||||||| Sbjct: 595 cacatcacactgcaaaaaagagagaaggggaaaacatggtcatctccaatacaaggccaa 654 Query: 726 ggtagcttagatccatatgctgcagaccaggaacagaaacggcttatgctgcaaaggttt 785 ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| Sbjct: 655 ggtagcttagatccatatgctgcagaccaagaacaaaaacggcttatgctgcaaaggttt 714 Query: 786 caagaagagaatcctgggtttgacttctcgcaggctcagttcagtggtacctgccctgac 845 |||||||||||||| || || |||||||| ||||||||||||| || |||||||||||| Sbjct: 715 caagaagagaatccaggattcgacttctcccaggctcagttcaccggaacctgccctgac 774 Query: 846 ccaaggaccttcatgggtggaattcacactgattgaag 883 ||||| ||||||||||||||||||| | |||| ||||| Sbjct: 775 ccaagaaccttcatgggtggaattcgctctgactgaag 812
>dbj|AK101664.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033057M08, full insert sequence Length = 1100 Score = 456 bits (230), Expect = e-125 Identities = 401/458 (87%) Strand = Plus / Plus Query: 426 gagaagcgccatgccttcgtccacaatgggcagaaggttttcgaatgggaccagtcgctg 485 |||||||| || |||||||||||||| ||||||||||| || || |||||||| | ||| Sbjct: 330 gagaagcggcacgccttcgtccacaacgggcagaaggtctttgagtgggaccaaacactg 389 Query: 486 gaggaggtgaacatgtacatcgagctccccaagaacgtgcccaccaagctgattcagtgt 545 ||||| |||||||||||||| |||||||||||| |||||||||||||| |||| || Sbjct: 390 gaggaagtgaacatgtacattgagctccccaagggtgtgcccaccaagctctttcactgc 449 Query: 546 gtgatccaggccagccacgttgaagtcggcattcgcggccaccctccctacctcaaccat 605 | |||||||||| || ||||| |||||||| |||||| | || ||||||||||||||| Sbjct: 450 gccatccaggccactcatgttgaggtcggcatccgcggcaatccaccctacctcaaccat 509 Query: 606 gatcttatgctccccgtgaagaccgattcatctttctggacgatagaggacggtgaattg 665 || || | ||||| |||||||| |||||||| |||||||| |||||||| |||||| || Sbjct: 510 gacctgacactcccagtgaagactgattcatcattctggacaatagaggatggtgaaatg 569 Query: 666 catatcactctgcaaaaaagggaaaaggggaaaacatgggcatctccaataaaaggccaa 725 || ||||| ||||||||||| || ||||||||||||||| ||||||||||| |||||||| Sbjct: 570 cacatcacactgcaaaaaagagagaaggggaaaacatggtcatctccaatacaaggccaa 629 Query: 726 ggtagcttagatccatatgctgcagaccaggaacagaaacggcttatgctgcaaaggttt 785 ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| Sbjct: 630 ggtagcttagatccatatgctgcagaccaagaacaaaaacggcttatgctgcaaaggttt 689 Query: 786 caagaagagaatcctgggtttgacttctcgcaggctcagttcagtggtacctgccctgac 845 |||||||||||||| || || |||||||| ||||||||||||| || |||||||||||| Sbjct: 690 caagaagagaatccaggattcgacttctcccaggctcagttcaccggaacctgccctgac 749 Query: 846 ccaaggaccttcatgggtggaattcacactgattgaag 883 ||||| ||||||||||||||||||| | |||| ||||| Sbjct: 750 ccaagaaccttcatgggtggaattcgctctgactgaag 787
>dbj|AK061159.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-208-H06, full insert sequence Length = 1126 Score = 442 bits (223), Expect = e-120 Identities = 401/459 (87%), Gaps = 1/459 (0%) Strand = Plus / Plus Query: 426 gagaagcgccatgccttcgtccacaatgggcagaaggttttcgaatgggaccagtcgctg 485 |||||||| || |||||||||||||| ||||||||||| || || |||||||| | ||| Sbjct: 355 gagaagcggcacgccttcgtccacaacgggcagaaggtctttgagtgggaccaaacactg 414 Query: 486 gaggaggtgaacatgtacatcgagctccccaagaacgtgcccaccaagctgattcagtgt 545 ||||| |||||||||||||| |||||||||||| |||||||||||||| |||| || Sbjct: 415 gaggaagtgaacatgtacattgagctccccaagggtgtgcccaccaagctctttcactgc 474 Query: 546 gtgatccaggccagccacgttgaagtcggcattcgcggccaccctccctacctcaaccat 605 | |||||||||| || ||||| |||||||| |||||| | || ||||||||||||||| Sbjct: 475 gccatccaggccactcatgttgaggtcggcatccgcggcaatccaccctacctcaaccat 534 Query: 606 gatcttatgctccccgtgaagaccgattcatctttctggacgatagaggacggtgaattg 665 || || | ||||| |||||||| |||||||| |||||||| |||||||| |||||| || Sbjct: 535 gacctgacactcccagtgaagactgattcatcattctggacaatagaggatggtgaaatg 594 Query: 666 catatcactctgcaaaaaagg-gaaaaggggaaaacatgggcatctccaataaaaggcca 724 || ||||| |||||||||| | || ||||||||||||||| ||||||||||| ||||||| Sbjct: 595 cacatcacactgcaaaaaaagagagaaggggaaaacatggtcatctccaatacaaggcca 654 Query: 725 aggtagcttagatccatatgctgcagaccaggaacagaaacggcttatgctgcaaaggtt 784 |||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| Sbjct: 655 aggtagcttagatccatatgctgcagaccaagaacaaaaacggcttatgctgcaaaggtt 714 Query: 785 tcaagaagagaatcctgggtttgacttctcgcaggctcagttcagtggtacctgccctga 844 ||||||||||||||| || || |||||||| ||||||||||||| || ||||||||||| Sbjct: 715 tcaagaagagaatccaggattcgacttctcccaggctcagttcaccggaacctgccctga 774 Query: 845 cccaaggaccttcatgggtggaattcacactgattgaag 883 |||||| ||||||||||||||||||| | |||| ||||| Sbjct: 775 cccaagaaccttcatgggtggaattcgctctgactgaag 813
>gb|DQ244821.1| Zea mays clone 11012 mRNA sequence Length = 748 Score = 406 bits (205), Expect = e-110 Identities = 403/469 (85%) Strand = Plus / Plus Query: 400 cggccatggcggagaggctggcacccgagaagcgccatgccttcgtccacaatgggcaga 459 ||||||||||||||| |||| |||||||||||||| ||||||| ||||| ||||||| Sbjct: 39 cggccatggcggagaatttggcccccgagaagcgccacaccttcgtgcacaacgggcaga 98 Query: 460 aggttttcgaatgggaccagtcgctggaggaggtgaacatgtacatcgagctccccaaga 519 |||| ||||| ||||||||| |||| ||||||||||||||||||||||||||||||||| Sbjct: 99 aggtgttcgagtgggaccagacgctagaggaggtgaacatgtacatcgagctccccaagg 158 Query: 520 acgtgcccaccaagctgattcagtgtgtgatccaggccagccacgttgaagtcggcattc 579 ||||||||||||||| | || || ||||||||||||||||| || |||||||| | Sbjct: 159 gcgtgcccaccaagctcttccactgcaccatccaggccagccacgtcgaggtcggcatcc 218 Query: 580 gcggccaccctccctacctcaaccatgatcttatgctccccgtgaagaccgattcatctt 639 ||||| |||| || || ||||||||||| || |||| ||||||||||||||| || || | Sbjct: 219 gcggcaacccgccatatctcaaccatgacctgatgcaccccgtgaagaccgactcgtcgt 278 Query: 640 tctggacgatagaggacggtgaattgcatatcactctgcaaaaaagggaaaaggggaaaa 699 ||||||| |||||||| | ||| ||||||| || ||||||||||| || |||||||||| Sbjct: 279 tctggacaatagaggatgctgagatgcatataacactgcaaaaaagagagaaggggaaaa 338 Query: 700 catgggcatctccaataaaaggccaaggtagcttagatccatatgctgcagaccaggaac 759 ||||| |||| |||||| |||| ||||| | || ||||||||||||||||| || || | Sbjct: 339 catggtcatccccaatacaagggcaagggattttggatccatatgctgcagatcaagagc 398 Query: 760 agaaacggcttatgctgcaaaggtttcaagaagagaatcctgggtttgacttctcgcagg 819 | || ||||||||||| ||||||||||| |||||||| || ||||| ||||| ||||||| Sbjct: 399 aaaagcggcttatgctccaaaggtttcaggaagagaacccagggttcgacttttcgcagg 458 Query: 820 ctcagttcagtggtacctgccctgacccaaggaccttcatgggtggaat 868 ||||||||||||| ||||||||||||||||| ||||||||||| ||||| Sbjct: 459 ctcagttcagtggaacctgccctgacccaagaaccttcatgggaggaat 507
>gb|AY106291.1| Zea mays PCO073370 mRNA sequence Length = 651 Score = 345 bits (174), Expect = 2e-91 Identities = 351/410 (85%) Strand = Plus / Plus Query: 453 gggcagaaggttttcgaatgggaccagtcgctggaggaggtgaacatgtacatcgagctc 512 ||||||||||| ||||| ||||||||| ||||||||||||| |||||||||||||||||| Sbjct: 104 gggcagaaggtgttcgagtgggaccagacgctggaggaggtcaacatgtacatcgagctc 163 Query: 513 cccaagaacgtgcccaccaagctgattcagtgtgtgatccaggccagccacgttgaagtc 572 || ||| ||||||||||||||| |||| || |||||||| |||||||| || ||| Sbjct: 164 ccgaagggcgtgcccaccaagctatttcactgcagcatccaggctagccacgtcgaggtc 223 Query: 573 ggcattcgcggccaccctccctacctcaaccatgatcttatgctccccgtgaagaccgat 632 ||||| |||||| |||| || |||||||||||||| || | | ||| |||||||| || Sbjct: 224 ggcatccgcggcaacccgccatacctcaaccatgacctgacacacccagtgaagactgac 283 Query: 633 tcatctttctggacgatagaggacggtgaattgcatatcactctgcaaaaaagggaaaag 692 || || |||||||| ||||| |||||||| ||||||| || ||||||||||| || ||| Sbjct: 284 tcgtcgttctggacaatagaagacggtgagatgcatataacactgcaaaaaagagagaag 343 Query: 693 gggaaaacatgggcatctccaataaaaggccaaggtagcttagatccatatgctgcagac 752 |||||||||||| ||||||||||| |||| ||||| | || ||||||||||||||||| Sbjct: 344 gggaaaacatggtcatctccaatacaagggcaagggattttggatccatatgctgcagat 403 Query: 753 caggaacagaaacggcttatgctgcaaaggtttcaagaagagaatcctgggtttgacttc 812 || || || || ||||||||||| ||||||||||| |||||||| |||||||| ||||| Sbjct: 404 caagagcaaaagcggcttatgctccaaaggtttcaggaagagaaccctgggttcgacttt 463 Query: 813 tcgcaggctcagttcagtggtacctgccctgacccaaggaccttcatggg 862 || ||||||||||||||||| ||||||||||||||||| ||||||||||| Sbjct: 464 tcacaggctcagttcagtggaacctgccctgacccaagaaccttcatggg 513
>gb|DQ244881.1| Zea mays clone 11505 mRNA sequence Length = 683 Score = 234 bits (118), Expect = 5e-58 Identities = 229/266 (86%) Strand = Plus / Plus Query: 603 catgatcttatgctccccgtgaagaccgattcatctttctggacgatagaggacggtgaa 662 ||||| || |||| ||||||||||||||| || || |||||||| |||||||| | ||| Sbjct: 228 catgacctgatgcaccccgtgaagaccgactcgtcgttctggacaatagaggatgctgag 287 Query: 663 ttgcatatcactctgcaaaaaagggaaaaggggaaaacatgggcatctccaataaaaggc 722 ||||||| || ||||||||||| || ||||||||||||||| |||| |||||| |||| Sbjct: 288 atgcatataacactgcaaaaaagagagaaggggaaaacatggtcatccccaatacaaggg 347 Query: 723 caaggtagcttagatccatatgctgcagaccaggaacagaaacggcttatgctgcaaagg 782 ||||| | || ||||||||||||||||| || || || || ||||||||||| |||||| Sbjct: 348 caagggattttggatccatatgctgcagatcaagagcaaaagcggcttatgctccaaagg 407 Query: 783 tttcaagaagagaatcctgggtttgacttctcgcaggctcagttcagtggtacctgccct 842 ||||| |||||||| || ||||| ||||| |||||||||||||||||||| ||||||||| Sbjct: 408 tttcaggaagagaacccagggttcgacttttcgcaggctcagttcagtggaacctgccct 467 Query: 843 gacccaaggaccttcatgggtggaat 868 |||||||| ||||||||||| ||||| Sbjct: 468 gacccaagaaccttcatgggaggaat 493 Score = 159 bits (80), Expect = 3e-35 Identities = 122/136 (89%) Strand = Plus / Plus Query: 400 cggccatggcggagaggctggcacccgagaagcgccatgccttcgtccacaatgggcaga 459 ||||||||||||||| |||| |||||||||||||| ||||||| ||||| ||||||| Sbjct: 58 cggccatggcggagaatttggcccccgagaagcgccacaccttcgtgcacaacgggcaga 117 Query: 460 aggttttcgaatgggaccagtcgctggaggaggtgaacatgtacatcgagctccccaaga 519 |||| ||||| ||||||||| |||| ||||||||||||||||||||||||||||||||| Sbjct: 118 aggtgttcgagtgggaccagacgctagaggaggtgaacatgtacatcgagctccccaagg 177 Query: 520 acgtgcccaccaagct 535 ||||||||||||||| Sbjct: 178 gcgtgcccaccaagct 193
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1 Length = 43261740 Score = 208 bits (105), Expect = 3e-50 Identities = 135/145 (93%) Strand = Plus / Plus Query: 650 agaggacggtgaattgcatatcactctgcaaaaaagggaaaaggggaaaacatgggcatc 709 |||||| |||||| |||| ||||| ||||||||||| || ||||||||||||||| |||| Sbjct: 27331565 agaggatggtgaaatgcacatcacactgcaaaaaagagagaaggggaaaacatggtcatc 27331624 Query: 710 tccaataaaaggccaaggtagcttagatccatatgctgcagaccaggaacagaaacggct 769 ||||||| ||||||||||||||||||||||||||||||||||||| ||||| |||||||| Sbjct: 27331625 tccaatacaaggccaaggtagcttagatccatatgctgcagaccaagaacaaaaacggct 27331684 Query: 770 tatgctgcaaaggtttcaagaagag 794 ||||||||||||||||||||||||| Sbjct: 27331685 tatgctgcaaaggtttcaagaagag 27331709 Score = 99.6 bits (50), Expect = 2e-17 Identities = 125/150 (83%) Strand = Plus / Plus Query: 453 gggcagaaggttttcgaatgggaccagtcgctggaggaggtgaacatgtacatcgagctc 512 ||||||||||| || || |||||||| | |||||||| |||||||||||||| |||||| Sbjct: 27330680 gggcagaaggtctttgagtgggaccaaacactggaggaagtgaacatgtacattgagctc 27330739 Query: 513 cccaagaacgtgcccaccaagctgattcagtgtgtgatccaggccagccacgttgaagtc 572 |||||| |||||||||||||| |||| || | |||||||||| || ||||| ||| Sbjct: 27330740 cccaagggtgtgcccaccaagctctttcactgcgccatccaggccactcatgttgaggtc 27330799 Query: 573 ggcattcgcggccaccctccctacctcaac 602 ||||| |||||| | || |||||||||||| Sbjct: 27330800 ggcatccgcggcaatccaccctacctcaac 27330829 Score = 93.7 bits (47), Expect = 1e-15 Identities = 80/91 (87%) Strand = Plus / Plus Query: 793 agaatcctgggtttgacttctcgcaggctcagttcagtggtacctgccctgacccaagga 852 ||||||| || || |||||||| ||||||||||||| || ||||||||||||||||| | Sbjct: 27332190 agaatccaggattcgacttctcccaggctcagttcaccggaacctgccctgacccaagaa 27332249 Query: 853 ccttcatgggtggaattcacactgattgaag 883 |||||||||||||||||| | |||| ||||| Sbjct: 27332250 ccttcatgggtggaattcgctctgactgaag 27332280
>dbj|AP003760.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBb0063G05 Length = 182681 Score = 208 bits (105), Expect = 3e-50 Identities = 135/145 (93%) Strand = Plus / Plus Query: 650 agaggacggtgaattgcatatcactctgcaaaaaagggaaaaggggaaaacatgggcatc 709 |||||| |||||| |||| ||||| ||||||||||| || ||||||||||||||| |||| Sbjct: 112082 agaggatggtgaaatgcacatcacactgcaaaaaagagagaaggggaaaacatggtcatc 112141 Query: 710 tccaataaaaggccaaggtagcttagatccatatgctgcagaccaggaacagaaacggct 769 ||||||| ||||||||||||||||||||||||||||||||||||| ||||| |||||||| Sbjct: 112142 tccaatacaaggccaaggtagcttagatccatatgctgcagaccaagaacaaaaacggct 112201 Query: 770 tatgctgcaaaggtttcaagaagag 794 ||||||||||||||||||||||||| Sbjct: 112202 tatgctgcaaaggtttcaagaagag 112226 Score = 99.6 bits (50), Expect = 2e-17 Identities = 125/150 (83%) Strand = Plus / Plus Query: 453 gggcagaaggttttcgaatgggaccagtcgctggaggaggtgaacatgtacatcgagctc 512 ||||||||||| || || |||||||| | |||||||| |||||||||||||| |||||| Sbjct: 111197 gggcagaaggtctttgagtgggaccaaacactggaggaagtgaacatgtacattgagctc 111256 Query: 513 cccaagaacgtgcccaccaagctgattcagtgtgtgatccaggccagccacgttgaagtc 572 |||||| |||||||||||||| |||| || | |||||||||| || ||||| ||| Sbjct: 111257 cccaagggtgtgcccaccaagctctttcactgcgccatccaggccactcatgttgaggtc 111316 Query: 573 ggcattcgcggccaccctccctacctcaac 602 ||||| |||||| | || |||||||||||| Sbjct: 111317 ggcatccgcggcaatccaccctacctcaac 111346 Score = 93.7 bits (47), Expect = 1e-15 Identities = 80/91 (87%) Strand = Plus / Plus Query: 793 agaatcctgggtttgacttctcgcaggctcagttcagtggtacctgccctgacccaagga 852 ||||||| || || |||||||| ||||||||||||| || ||||||||||||||||| | Sbjct: 112707 agaatccaggattcgacttctcccaggctcagttcaccggaacctgccctgacccaagaa 112766 Query: 853 ccttcatgggtggaattcacactgattgaag 883 |||||||||||||||||| | |||| ||||| Sbjct: 112767 ccttcatgggtggaattcgctctgactgaag 112797
>dbj|AP004194.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0014E08 Length = 144219 Score = 208 bits (105), Expect = 3e-50 Identities = 135/145 (93%) Strand = Plus / Plus Query: 650 agaggacggtgaattgcatatcactctgcaaaaaagggaaaaggggaaaacatgggcatc 709 |||||| |||||| |||| ||||| ||||||||||| || ||||||||||||||| |||| Sbjct: 14460 agaggatggtgaaatgcacatcacactgcaaaaaagagagaaggggaaaacatggtcatc 14519 Query: 710 tccaataaaaggccaaggtagcttagatccatatgctgcagaccaggaacagaaacggct 769 ||||||| ||||||||||||||||||||||||||||||||||||| ||||| |||||||| Sbjct: 14520 tccaatacaaggccaaggtagcttagatccatatgctgcagaccaagaacaaaaacggct 14579 Query: 770 tatgctgcaaaggtttcaagaagag 794 ||||||||||||||||||||||||| Sbjct: 14580 tatgctgcaaaggtttcaagaagag 14604 Score = 99.6 bits (50), Expect = 2e-17 Identities = 125/150 (83%) Strand = Plus / Plus Query: 453 gggcagaaggttttcgaatgggaccagtcgctggaggaggtgaacatgtacatcgagctc 512 ||||||||||| || || |||||||| | |||||||| |||||||||||||| |||||| Sbjct: 13575 gggcagaaggtctttgagtgggaccaaacactggaggaagtgaacatgtacattgagctc 13634 Query: 513 cccaagaacgtgcccaccaagctgattcagtgtgtgatccaggccagccacgttgaagtc 572 |||||| |||||||||||||| |||| || | |||||||||| || ||||| ||| Sbjct: 13635 cccaagggtgtgcccaccaagctctttcactgcgccatccaggccactcatgttgaggtc 13694 Query: 573 ggcattcgcggccaccctccctacctcaac 602 ||||| |||||| | || |||||||||||| Sbjct: 13695 ggcatccgcggcaatccaccctacctcaac 13724 Score = 93.7 bits (47), Expect = 1e-15 Identities = 80/91 (87%) Strand = Plus / Plus Query: 793 agaatcctgggtttgacttctcgcaggctcagttcagtggtacctgccctgacccaagga 852 ||||||| || || |||||||| ||||||||||||| || ||||||||||||||||| | Sbjct: 15085 agaatccaggattcgacttctcccaggctcagttcaccggaacctgccctgacccaagaa 15144 Query: 853 ccttcatgggtggaattcacactgattgaag 883 |||||||||||||||||| | |||| ||||| Sbjct: 15145 ccttcatgggtggaattcgctctgactgaag 15175
>emb|CT987369.1| partial cDNA sequence from a Lambda ZAP II normalized full-length cDNA library of differentiating xylem from Eucalyptus gunnii Length = 758 Score = 71.9 bits (36), Expect = 5e-09 Identities = 75/88 (85%) Strand = Plus / Plus Query: 783 tttcaagaagagaatcctgggtttgacttctcgcaggctcagttcagtggtacctgccct 842 |||||||||||||||||||| ||||||||||| || ||||| |||| ||| ||| ||| Sbjct: 373 tttcaagaagagaatcctggatttgacttctctcaagctcaattcactggcgactgtcct 432 Query: 843 gacccaaggaccttcatgggtggaattc 870 || || |||||||| |||||||| |||| Sbjct: 433 gatccgaggacctttatgggtggtattc 460 Score = 56.0 bits (28), Expect = 3e-04 Identities = 70/84 (83%) Strand = Plus / Plus Query: 423 cccgagaagcgccatgccttcgtccacaatgggcagaaggttttcgaatgggaccagtcg 482 |||||||||||||| | |||| |||||| || |||| ||| ||||| ||||| ||| | Sbjct: 13 cccgagaagcgccacgtcttctcccacaacggtcagacggtgttcgagtgggatcagacc 72 Query: 483 ctggaggaggtgaacatgtacatc 506 ||||||||||| ||||| |||||| Sbjct: 73 ctggaggaggtcaacatctacatc 96
>ref|NM_125261.3| Arabidopsis thaliana unknown protein (AT5G58740) mRNA, complete cds Length = 677 Score = 65.9 bits (33), Expect = 3e-07 Identities = 60/69 (86%) Strand = Plus / Plus Query: 759 cagaaacggcttatgctgcaaaggtttcaagaagagaatcctgggtttgacttctcgcag 818 ||||| ||||| ||||| || ||||||||||||||||| || || || ||||||||||| Sbjct: 393 cagaagcggctcatgctccagaggtttcaagaagagaacccgggattcgacttctcgcaa 452 Query: 819 gctcagttc 827 ||||||||| Sbjct: 453 gctcagttc 461
>gb|AY117251.1| Arabidopsis thaliana unknown protein (At5g58740) mRNA, complete cds Length = 508 Score = 65.9 bits (33), Expect = 3e-07 Identities = 60/69 (86%) Strand = Plus / Plus Query: 759 cagaaacggcttatgctgcaaaggtttcaagaagagaatcctgggtttgacttctcgcag 818 ||||| ||||| ||||| || ||||||||||||||||| || || || ||||||||||| Sbjct: 355 cagaagcggctcatgctccagaggtttcaagaagagaacccgggattcgacttctcgcaa 414 Query: 819 gctcagttc 827 ||||||||| Sbjct: 415 gctcagttc 423
>gb|AY074384.1| Arabidopsis thaliana unknown protein (At5g58740) mRNA, complete cds Length = 693 Score = 65.9 bits (33), Expect = 3e-07 Identities = 60/69 (86%) Strand = Plus / Plus Query: 759 cagaaacggcttatgctgcaaaggtttcaagaagagaatcctgggtttgacttctcgcag 818 ||||| ||||| ||||| || ||||||||||||||||| || || || ||||||||||| Sbjct: 393 cagaagcggctcatgctccagaggtttcaagaagagaacccgggattcgacttctcgcaa 452 Query: 819 gctcagttc 827 ||||||||| Sbjct: 453 gctcagttc 461
>emb|BX833583.1|CNS0A0FF Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL63ZH04 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 616 Score = 65.9 bits (33), Expect = 3e-07 Identities = 60/69 (86%) Strand = Plus / Plus Query: 759 cagaaacggcttatgctgcaaaggtttcaagaagagaatcctgggtttgacttctcgcag 818 ||||| ||||| ||||| || ||||||||||||||||| || || || ||||||||||| Sbjct: 368 cagaagcggctcatgctccagaggtttcaagaagagaacccgggattcgacttctcgcaa 427 Query: 819 gctcagttc 827 ||||||||| Sbjct: 428 gctcagttc 436
>emb|CT986563.1| partial cDNA sequence from a Lambda ZAP II normalized full-length cDNA library of differentiating xylem from Eucalyptus gunnii Length = 564 Score = 52.0 bits (26), Expect = 0.004 Identities = 65/78 (83%) Strand = Plus / Plus Query: 793 agaatcctgggtttgacttctcgcaggctcagttcagtggtacctgccctgacccaagga 852 |||||||||| ||||||||||| || ||||| |||| ||| ||| ||||| || |||| Sbjct: 142 agaatcctggatttgacttctctcaagctcaattcactggcgactgtcctgatccgagga 201 Query: 853 ccttcatgggtggaattc 870 |||| |||||||| |||| Sbjct: 202 cctttatgggtggtattc 219
>emb|CT981095.1| partial cDNA sequence from a Lambda ZAP II normalized full-length cDNA library of differentiating xylem from Eucalyptus gunnii Length = 564 Score = 52.0 bits (26), Expect = 0.004 Identities = 65/78 (83%) Strand = Plus / Plus Query: 793 agaatcctgggtttgacttctcgcaggctcagttcagtggtacctgccctgacccaagga 852 |||||||||| ||||||||||| || ||||| |||| ||| ||| ||||| || |||| Sbjct: 142 agaatcctggatttgacttctctcaagctcaattcactggcgactgtcctgatccgagga 201 Query: 853 ccttcatgggtggaattc 870 |||| |||||||| |||| Sbjct: 202 cctttatgggtggtattc 219
>gb|AY454555.1| Uncultured crenarchaeote clone DI_A04 16S ribosomal RNA gene, partial sequence Length = 1139 Score = 48.1 bits (24), Expect = 0.066 Identities = 24/24 (100%) Strand = Plus / Minus Query: 388 cgccgaatcccgcggccatggcgg 411 |||||||||||||||||||||||| Sbjct: 80 cgccgaatcccgcggccatggcgg 57
>gb|DQ129877.1| Arthrobacter sp. LCKW-Isolate25N 16S ribosomal RNA gene, partial sequence Length = 1490 Score = 44.1 bits (22), Expect = 1.0 Identities = 22/22 (100%) Strand = Plus / Plus Query: 390 ccgaatcccgcggccatggcgg 411 |||||||||||||||||||||| Sbjct: 1451 ccgaatcccgcggccatggcgg 1472
>gb|DQ129874.1| Bacillus sp. LCKW-Isolate15N 16S ribosomal RNA gene, partial sequence Length = 1441 Score = 44.1 bits (22), Expect = 1.0 Identities = 22/22 (100%) Strand = Plus / Plus Query: 390 ccgaatcccgcggccatggcgg 411 |||||||||||||||||||||| Sbjct: 1403 ccgaatcccgcggccatggcgg 1424
>emb|AL353152.8| Human DNA sequence from clone RP11-359N11 on chromosome 6 Contains two novel genes (including FLJ32264) and a CpG island, complete sequence Length = 119416 Score = 44.1 bits (22), Expect = 1.0 Identities = 28/30 (93%) Strand = Plus / Plus Query: 981 tcagattattcagtatttaccctggaaata 1010 |||||||||||||| | ||||||||||||| Sbjct: 84814 tcagattattcagtgtataccctggaaata 84843
>gb|AC008651.7|AC008651 Homo sapiens chromosome 5 clone CTB-187A7, complete sequence Length = 147098 Score = 44.1 bits (22), Expect = 1.0 Identities = 25/26 (96%) Strand = Plus / Minus Query: 951 gcacatgtaacttgtgaaaacaatgt 976 |||||||||||||| ||||||||||| Sbjct: 80593 gcacatgtaacttgagaaaacaatgt 80568
>gb|AC124890.8| Homo sapiens 12 BAC RP11-450G15 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 114240 Score = 44.1 bits (22), Expect = 1.0 Identities = 25/26 (96%) Strand = Plus / Plus Query: 951 gcacatgtaacttgtgaaaacaatgt 976 |||||||||||||| ||||||||||| Sbjct: 29237 gcacatgtaacttgagaaaacaatgt 29262
>gb|AF152937.1|AF152937 Clavispora opuntiae strain UCD(FST)86-7.3 5S ribosomal RNA gene and external transcribed spacer, complete sequence Length = 2175 Score = 44.1 bits (22), Expect = 1.0 Identities = 22/22 (100%) Strand = Plus / Plus Query: 679 aaaaaagggaaaaggggaaaac 700 |||||||||||||||||||||| Sbjct: 671 aaaaaagggaaaaggggaaaac 692
>ref|NM_001009621.1| Rattus norvegicus NudC domain containing 2 (Nudcd2), mRNA gb|BC088299.1| Rattus norvegicus NudC domain containing 2, mRNA (cDNA clone MGC:109498 IMAGE:7323100), complete cds Length = 1602 Score = 44.1 bits (22), Expect = 1.0 Identities = 22/22 (100%) Strand = Plus / Plus Query: 790 aagagaatcctgggtttgactt 811 |||||||||||||||||||||| Sbjct: 669 aagagaatcctgggtttgactt 690
>dbj|AB023096.1| Bombyx mori DNA, U16.105b-f RAPD sequence Length = 395 Score = 44.1 bits (22), Expect = 1.0 Identities = 25/26 (96%) Strand = Plus / Minus Query: 386 agcgccgaatcccgcggccatggcgg 411 ||||| |||||||||||||||||||| Sbjct: 40 agcgcagaatcccgcggccatggcgg 15
>gb|DQ127800.1| Emiliania huxleyi virus 163 clone extra44.seq partial sequence Length = 198 Score = 42.1 bits (21), Expect = 4.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 680 aaaaagggaaaaggggaaaac 700 ||||||||||||||||||||| Sbjct: 164 aaaaagggaaaaggggaaaac 184
>gb|AC131085.16| Mus musculus chromosome 13, clone RP23-452D10, complete sequence Length = 168579 Score = 42.1 bits (21), Expect = 4.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 679 aaaaaagggaaaaggggaaaa 699 ||||||||||||||||||||| Sbjct: 34786 aaaaaagggaaaaggggaaaa 34766
>gb|AC084023.8| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBa0062C05 map S21174S, complete sequence Length = 178867 Score = 42.1 bits (21), Expect = 4.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 397 ccgcggccatggcggagaggc 417 ||||||||||||||||||||| Sbjct: 30417 ccgcggccatggcggagaggc 30437
>gb|AC137001.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0012L23, complete sequence Length = 121659 Score = 42.1 bits (21), Expect = 4.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 679 aaaaaagggaaaaggggaaaa 699 ||||||||||||||||||||| Sbjct: 75826 aaaaaagggaaaaggggaaaa 75846
>gb|AC133464.11| Mus musculus chromosome 16, clone RP24-459O21, complete sequence Length = 142742 Score = 42.1 bits (21), Expect = 4.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 679 aaaaaagggaaaaggggaaaa 699 ||||||||||||||||||||| Sbjct: 18630 aaaaaagggaaaaggggaaaa 18650
>gb|AC116412.19| Mus musculus chromosome 5, clone RP24-82A20, complete sequence Length = 191823 Score = 42.1 bits (21), Expect = 4.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 679 aaaaaagggaaaaggggaaaa 699 ||||||||||||||||||||| Sbjct: 183699 aaaaaagggaaaaggggaaaa 183679
>gb|AC147624.2| Mus musculus BAC clone RP24-329I13 from chromosome 18, complete sequence Length = 176258 Score = 42.1 bits (21), Expect = 4.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 679 aaaaaagggaaaaggggaaaa 699 ||||||||||||||||||||| Sbjct: 132737 aaaaaagggaaaaggggaaaa 132717
>gb|AC125086.4| Mus musculus BAC clone RP24-137C4 from chromosome 18, complete sequence Length = 120722 Score = 42.1 bits (21), Expect = 4.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 679 aaaaaagggaaaaggggaaaa 699 ||||||||||||||||||||| Sbjct: 71594 aaaaaagggaaaaggggaaaa 71614
>gb|AC078840.6| Oryza sativa chromosome 10 BAC OSJNBb0073N24 genomic sequence, complete sequence Length = 130058 Score = 42.1 bits (21), Expect = 4.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 397 ccgcggccatggcggagaggc 417 ||||||||||||||||||||| Sbjct: 96275 ccgcggccatggcggagaggc 96295
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10 Length = 22685906 Score = 42.1 bits (21), Expect = 4.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 397 ccgcggccatggcggagaggc 417 ||||||||||||||||||||| Sbjct: 18734997 ccgcggccatggcggagaggc 18735017
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5 Length = 29737217 Score = 42.1 bits (21), Expect = 4.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 679 aaaaaagggaaaaggggaaaa 699 ||||||||||||||||||||| Sbjct: 7215812 aaaaaagggaaaaggggaaaa 7215832
>emb|Z83850.1|HS82J11 Human DNA sequence from clone RP1-82J11 on chromosome Xq22, complete sequence Length = 132981 Score = 42.1 bits (21), Expect = 4.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 971 caatgtgctttcagattattc 991 ||||||||||||||||||||| Sbjct: 13045 caatgtgctttcagattattc 13065
>emb|AL929515.4| Human DNA sequence from clone CTD-2280P12 on chromosome 13, complete sequence Length = 26561 Score = 42.1 bits (21), Expect = 4.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 872 cactgattgaagaagctcagc 892 ||||||||||||||||||||| Sbjct: 10621 cactgattgaagaagctcagc 10641
>gb|AC155810.5| Mus musculus BAC clone RP24-181I18 from chromosome 8, complete sequence Length = 168291 Score = 42.1 bits (21), Expect = 4.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 378 gcatcgggagcgccgaatccc 398 ||||||||||||||||||||| Sbjct: 85339 gcatcgggagcgccgaatccc 85359
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 42.1 bits (21), Expect = 4.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 25 cgcctcctcggtgatccggtt 45 ||||||||||||||||||||| Sbjct: 3490250 cgcctcctcggtgatccggtt 3490270
>emb|AL645912.18| Mouse DNA sequence from clone RP23-134G19 on chromosome 11 Contains the 5' end of the gene for a novel protein similar to human KIBRA, a pseudogene similar to part of actin, the Odz2 gene for odd Oz/ten-m homolog 2 (Drosophila) and two CpG islands, complete sequence Length = 186736 Score = 42.1 bits (21), Expect = 4.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 679 aaaaaagggaaaaggggaaaa 699 ||||||||||||||||||||| Sbjct: 141898 aaaaaagggaaaaggggaaaa 141878
>emb|CR936675.1| Homo sapiens mRNA; cDNA DKFZp686F081 (from clone DKFZp686F081) Length = 1356 Score = 42.1 bits (21), Expect = 4.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 676 tgcaaaaaagggaaaagggga 696 ||||||||||||||||||||| Sbjct: 1233 tgcaaaaaagggaaaagggga 1253
>gb|AC078988.18| Homo sapiens X BAC RP11-169J21 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 169849 Score = 42.1 bits (21), Expect = 4.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 676 tgcaaaaaagggaaaaggggaaaac 700 ||||||||| ||||||||||||||| Sbjct: 97666 tgcaaaaaatggaaaaggggaaaac 97690
>gb|AF152933.1|AF152933 Clavispora opuntiae strain SU(B)94-302.1 5S ribosomal RNA gene and external transcribed spacer, complete sequence Length = 2186 Score = 42.1 bits (21), Expect = 4.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 679 aaaaaagggaaaaggggaaaa 699 ||||||||||||||||||||| Sbjct: 663 aaaaaagggaaaaggggaaaa 683
>emb|CT573031.6| Mouse DNA sequence from clone RP24-244H14 on chromosome 16, complete sequence Length = 170444 Score = 42.1 bits (21), Expect = 4.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 679 aaaaaagggaaaaggggaaaa 699 ||||||||||||||||||||| Sbjct: 812 aaaaaagggaaaaggggaaaa 792
>gb|AC003106.1|AC003106 Homo sapiens Xp22 GS-524I1 (Genome Systems Human BAC library), complete sequence Length = 128888 Score = 42.1 bits (21), Expect = 4.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 676 tgcaaaaaagggaaaaggggaaaac 700 ||||||||| ||||||||||||||| Sbjct: 33803 tgcaaaaaatggaaaaggggaaaac 33779
>emb|CR933268.1| Uncultured bacterium partial 16S rRNA gene from clone 053C05_B_DI_P58 Length = 1287 Score = 42.1 bits (21), Expect = 4.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 391 cgaatcccgcggccatggcgg 411 ||||||||||||||||||||| Sbjct: 30 cgaatcccgcggccatggcgg 10
>gb|AC148013.3| Mus musculus BAC clone RP23-134C2 from 18, complete sequence Length = 192504 Score = 42.1 bits (21), Expect = 4.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 679 aaaaaagggaaaaggggaaaa 699 ||||||||||||||||||||| Sbjct: 177997 aaaaaagggaaaaggggaaaa 178017 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 171,356,387 Number of extensions: 8676220 Number of successful extensions: 167788 Number of sequences better than 10.0: 49 Number of HSP's gapped: 167786 Number of HSP's successfully gapped: 58 Length of query: 1082 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 1059 Effective length of database: 18,503,978,556 Effective search space: 19595713290804 Effective search space used: 19595713290804 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)