ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf19c12 |
|---|---|
| Clone Library Name | barley_pub |
>Q8K0H5:TAF10_MOUSE Transcription initiation factor TFIID subunit 10 - Mus musculus| (Mouse) Length = 218 Score = 111 bits (277), Expect = 4e-24 Identities = 53/104 (50%), Positives = 73/104 (70%) Frame = +1 Query: 208 LTEFLSSLMDYNPTIPDELVEHYLGRSGFHCPDLRLTRLVAVAAQKFISDIASDSLQHCK 387 L +FL L DY PTIPD + +YL R+GF D R+ RL+++AAQKFISDIA+D+LQHCK Sbjct: 116 LVDFLMQLEDYTPTIPDAVTGYYLNRAGFEASDPRIIRLISLAAQKFISDIANDALQHCK 175 Query: 388 ARVAAPIKDNKSKQPKDRRLVLTMDDLSKALREHGVNLRHPEYF 519 + A + + KDR+ LTM+DL+ AL E+G+N++ P YF Sbjct: 176 MKGTA--SGSSRSKSKDRKYTLTMEDLTPALSEYGINVKKPHYF 217
>Q12962:TAF10_HUMAN Transcription initiation factor TFIID subunit 10 - Homo sapiens| (Human) Length = 218 Score = 111 bits (277), Expect = 4e-24 Identities = 53/104 (50%), Positives = 73/104 (70%) Frame = +1 Query: 208 LTEFLSSLMDYNPTIPDELVEHYLGRSGFHCPDLRLTRLVAVAAQKFISDIASDSLQHCK 387 L +FL L DY PTIPD + +YL R+GF D R+ RL+++AAQKFISDIA+D+LQHCK Sbjct: 116 LVDFLMQLEDYTPTIPDAVTGYYLNRAGFEASDPRIIRLISLAAQKFISDIANDALQHCK 175 Query: 388 ARVAAPIKDNKSKQPKDRRLVLTMDDLSKALREHGVNLRHPEYF 519 + A + + KDR+ LTM+DL+ AL E+G+N++ P YF Sbjct: 176 MKGTA--SGSSRSKSKDRKYTLTMEDLTPALSEYGINVKKPHYF 217
>Q9U5W9:TAF10_DROME Transcription initiation factor TFIID subunit 10 - Drosophila| melanogaster (Fruit fly) Length = 167 Score = 107 bits (267), Expect = 5e-23 Identities = 53/114 (46%), Positives = 72/114 (63%), Gaps = 6/114 (5%) Frame = +1 Query: 196 DEAVLTEFLSSLMDYNPTIPDELVEHYLGRSGFHCPDLRLTRLVAVAAQKFISDIASDSL 375 +E+ + E + L DY+PTIPD L H L +GF D ++ RLV+V+AQKFISDIA+D+L Sbjct: 53 EESEMDELIKQLEDYSPTIPDALTMHILKTAGFCTVDPKIVRLVSVSAQKFISDIANDAL 112 Query: 376 QHCKARV------AAPIKDNKSKQPKDRRLVLTMDDLSKALREHGVNLRHPEYF 519 QHCK R + K PKDR+ L M+DL AL +HG+ +R P+YF Sbjct: 113 QHCKTRTTNIQHSSGHSSSKDKKNPKDRKYTLAMEDLVPALADHGITMRKPQYF 166
>Q9XZT7:TAFAB_DROME Transcription initiation factor TFIID subunit 10b - Drosophila| melanogaster (Fruit fly) Length = 146 Score = 99.0 bits (245), Expect = 2e-20 Identities = 47/104 (45%), Positives = 67/104 (64%), Gaps = 1/104 (0%) Frame = +1 Query: 208 LTEFLSSLMDYNPTIPDELVEHYLGRSGFHCPDLRLTRLVAVAAQKFISDIASDSLQHCK 387 L++F+S L DY P IPD + HYL GF D R+ RL+++AAQK++SDI D+LQH K Sbjct: 41 LSDFMSQLEDYTPLIPDAVTSHYLNMGGFQSDDKRIVRLISLAAQKYMSDIIDDALQHSK 100 Query: 388 ARVAAPIKDNK-SKQPKDRRLVLTMDDLSKALREHGVNLRHPEY 516 AR + + KDR+ LTM+DL AL ++G+N+R +Y Sbjct: 101 ARTHMQTTNTPGGSKAKDRKFTLTMEDLQPALADYGINVRKVDY 144
>Q12030:TAF10_YEAST Transcription initiation factor TFIID subunit 10 - Saccharomyces| cerevisiae (Baker's yeast) Length = 206 Score = 76.6 bits (187), Expect = 1e-13 Identities = 40/135 (29%), Positives = 73/135 (54%), Gaps = 28/135 (20%) Frame = +1 Query: 199 EAVLTEFLSSLMDYNPTIPDELVEHYLGRSGFHCPDLRLTRLVAVAAQKFISDIASDSLQ 378 + L E L + P IPD ++++YL ++GF+ D+R+ RL+A+A QKF+SDIA D+ + Sbjct: 71 DKTLEEILEMMDSTPPIIPDAVIDYYLTKNGFNVADVRVKRLLALATQKFVSDIAKDAYE 130 Query: 379 HCKARVAAPIKDNKSKQPKDRRL----------------------------VLTMDDLSK 474 + + R + + + + Q + R+L VLT++DLS Sbjct: 131 YSRIRSSVAVSNANNSQARARQLLQGQQQPGVQQISQQQHQQNEKTTASKVVLTVNDLSS 190 Query: 475 ALREHGVNLRHPEYF 519 A+ E+G+N+ P+++ Sbjct: 191 AVAEYGLNIGRPDFY 205
>Q3K6G9:TRMA_PSEPF tRNA - Pseudomonas fluorescens (strain PfO-1)| Length = 359 Score = 37.4 bits (85), Expect = 0.069 Identities = 34/112 (30%), Positives = 54/112 (48%), Gaps = 10/112 (8%) Frame = +1 Query: 256 DELVEHYLGRSGFHCPDLRLTRLVAVAAQKFISDIASDSLQHCKARVAAPIKDNKSKQPK 435 D+L+E Y G F P TR+ V A ++I+ S+ + +A DN + Sbjct: 205 DDLLELYCGNGNFTLP--LATRVRKVLA----TEISKTSVNAALSNLAENAVDNVTL--- 255 Query: 436 DRRLVLTMDDLSKALRE-------HGVNLRHPEY---FADSPSAGMAPSTRE 561 + L+ ++L++AL E HG++L+ E+ F D P AGM P T E Sbjct: 256 ---VRLSAEELTEALNEVRPFRRLHGIDLKSYEFGSVFVDPPRAGMDPDTCE 304
>Q9RHS9:TRMA_PSEFL tRNA - Pseudomonas fluorescens| Length = 363 Score = 35.0 bits (79), Expect = 0.34 Identities = 33/112 (29%), Positives = 53/112 (47%), Gaps = 10/112 (8%) Frame = +1 Query: 256 DELVEHYLGRSGFHCPDLRLTRLVAVAAQKFISDIASDSLQHCKARVAAPIKDNKSKQPK 435 D+L+E Y G F P TR+ V A ++I+ S+ + + DN + Sbjct: 209 DDLLELYCGNGNFTLP--LATRVRKVLA----TEISKTSVNAALSNLDENAVDNVTL--- 259 Query: 436 DRRLVLTMDDLSKALRE-------HGVNLRHPEY---FADSPSAGMAPSTRE 561 + L+ ++L++AL E HG++L+ E+ F D P AGM P T E Sbjct: 260 ---VRLSAEELTEALNEVRPFRRLHGIDLKSYEFGSVFVDPPRAGMDPDTCE 308
>Q4K5P2:TRMA_PSEF5 tRNA - Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477)| Length = 359 Score = 33.5 bits (75), Expect = 0.99 Identities = 33/112 (29%), Positives = 53/112 (47%), Gaps = 10/112 (8%) Frame = +1 Query: 256 DELVEHYLGRSGFHCPDLRLTRLVAVAAQKFISDIASDSLQHCKARVAAPIKDNKSKQPK 435 D+L+E Y G F P TR+ V A ++I+ S+ + ++ DN + Sbjct: 205 DDLLELYCGNGNFTLP--LATRVRKVLA----TEISKTSVNAALSNLSENAVDNVTL--- 255 Query: 436 DRRLVLTMDDLSKALRE-------HGVNLRHPEY---FADSPSAGMAPSTRE 561 + L+ ++L++AL E GV+L+ E+ F D P AGM P T E Sbjct: 256 ---VRLSAEELTEALNEVRPFRRLQGVDLKSYEFGSVFVDPPRAGMDPDTCE 304
>Q4ZNF5:TRMA_PSEU2 tRNA - Pseudomonas syringae pv. syringae (strain B728a)| Length = 361 Score = 33.1 bits (74), Expect = 1.3 Identities = 33/113 (29%), Positives = 51/113 (45%), Gaps = 11/113 (9%) Frame = +1 Query: 256 DELVEHYLGRSGFHCPDLRLTRLVAVAAQKFISDIASDSLQHCKARVAAPIKDNKSKQPK 435 D+L+E Y G F P +A +K ++ S K V A + + Sbjct: 207 DDLLELYCGNGNFTLP-------LATRVRKVLATEIS------KTSVNAALSNLDDNGVD 253 Query: 436 DRRLV-LTMDDLSKALRE-------HGVNLRHPEY---FADSPSAGMAPSTRE 561 + LV L+ ++L++AL E HGV+L+ ++ F D P AGM P T E Sbjct: 254 NVTLVRLSAEELTEALNEVRPFRRLHGVDLKSYDFGSVFVDPPRAGMDPDTCE 306
>Q88E14:TRMA_PSEPK tRNA - Pseudomonas putida (strain KT2440)| Length = 361 Score = 33.1 bits (74), Expect = 1.3 Identities = 30/112 (26%), Positives = 49/112 (43%), Gaps = 10/112 (8%) Frame = +1 Query: 256 DELVEHYLGRSGFHCPDLRLTRLVAVAAQKFISDIASDSLQHCKARVAAPIKDNKSKQPK 435 D+L+E Y G F P L Q ++I+ S+ + + DN Sbjct: 207 DDLLELYCGNGNFTLP------LATRVRQVLATEISKTSVNAALSNLDENAVDNV----- 255 Query: 436 DRRLVLTMDDLSKALRE-------HGVNLRHPEY---FADSPSAGMAPSTRE 561 R + L+ ++L++AL E G++L+ ++ F D P AGM P T E Sbjct: 256 -RLVRLSAEELTQALNEVRPFRRLEGIDLKSYQFGTVFVDPPRAGMDPDTCE 306
>Q48DT0:TRMA_PSE14 tRNA - Pseudomonas syringae pv. phaseolicola (strain 1448A / Race| 6) Length = 361 Score = 33.1 bits (74), Expect = 1.3 Identities = 33/113 (29%), Positives = 51/113 (45%), Gaps = 11/113 (9%) Frame = +1 Query: 256 DELVEHYLGRSGFHCPDLRLTRLVAVAAQKFISDIASDSLQHCKARVAAPIKDNKSKQPK 435 D+L+E Y G F P +A +K ++ S K V A + + Sbjct: 207 DDLLELYCGNGNFTLP-------LATRVRKVLATEIS------KTSVNAALSNLDDNGVD 253 Query: 436 DRRLV-LTMDDLSKALRE-------HGVNLRHPEY---FADSPSAGMAPSTRE 561 + LV L+ ++L++AL E HGV+L+ ++ F D P AGM P T E Sbjct: 254 NVTLVRLSAEELTEALNEVRPFRRLHGVDLKSYDFGSVFVDPPRAGMDPDTCE 306
>Q1I4J8:TRMA_PSEE4 tRNA - Pseudomonas entomophila (strain L48)| Length = 361 Score = 32.7 bits (73), Expect = 1.7 Identities = 33/113 (29%), Positives = 51/113 (45%), Gaps = 11/113 (9%) Frame = +1 Query: 256 DELVEHYLGRSGFHCPDLRLTRLVAVAAQKFISDIASDSLQHCKARVAAPIKDNKSKQPK 435 D+L+E Y G F P L A Q ++I+ K V A + + Sbjct: 207 DDLLELYCGNGNFTLP------LATRARQVLATEIS-------KTSVNAALHNLDENGVD 253 Query: 436 DRRLV-LTMDDLSKALRE-------HGVNLRHPEY---FADSPSAGMAPSTRE 561 + RLV L+ ++L++AL E G++L+ ++ F D P AGM P T E Sbjct: 254 NVRLVRLSAEELTQALNEVRPFRRLEGIDLKSYDFGTVFVDPPRAGMDPDTCE 306
>Q67NK1:MUTS_SYMTH DNA mismatch repair protein mutS - Symbiobacterium thermophilum| Length = 875 Score = 32.0 bits (71), Expect = 2.9 Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 2/80 (2%) Frame = +1 Query: 259 ELVEHY--LGRSGFHCPDLRLTRLVAVAAQKFISDIASDSLQHCKARVAAPIKDNKSKQP 432 +L EH+ SGF C DL L A AA ++ ++ SL H D P Sbjct: 217 KLTEHFGTANLSGFGCEDLELATSAAGAALAYLEEMHKASLGHVSGLAVYYPGDYMVLDP 276 Query: 433 KDRRLVLTMDDLSKALREHG 492 RR + +L+++LR+ G Sbjct: 277 ATRRNL----ELTRSLRDGG 292
>Q9UHI6:DDX20_HUMAN Probable ATP-dependent RNA helicase DDX20 - Homo sapiens (Human)| Length = 824 Score = 31.6 bits (70), Expect = 3.8 Identities = 32/129 (24%), Positives = 53/129 (41%), Gaps = 15/129 (11%) Frame = +1 Query: 253 PDELVEHYLG--------RSGFHCPDLRLTRLVAVAAQKFISDIASDSLQHCKARVAAPI 408 P E++ HY G ++GF + R+ +A+ D SDS + +R ++ Sbjct: 609 PVEIIRHYTGPGDQTVNPQNGFVRNKVIEQRVPVLASSSQSGDSESDSDSY-SSRTSSQS 667 Query: 409 KDNKS-------KQPKDRRLVLTMDDLSKALREHGVNLRHPEYFADSPSAGMAPSTREE* 567 K NKS Q KD D +S +G + +PE + +SP M +E Sbjct: 668 KGNKSYLEGSSDNQLKDSESTPVDDRISLEQPPNGSDTPNPEKYQESPGIQMKTRLKEGA 727 Query: 568 NRSLLQQER 594 ++ Q R Sbjct: 728 SQRAKQSRR 736
>Q9HV78:TRMA_PSEAE tRNA - Pseudomonas aeruginosa| Length = 363 Score = 30.8 bits (68), Expect = 6.4 Identities = 33/112 (29%), Positives = 51/112 (45%), Gaps = 10/112 (8%) Frame = +1 Query: 256 DELVEHYLGRSGFHCPDLRLTRLVAVAAQKFISDIASDSLQHCKARVAAPIKDNKSKQPK 435 D+L+E Y G F P TR+ V A ++I+ S+ A +A DN S Sbjct: 209 DDLLELYCGNGNFTLP--LATRVRKVLA----TEISKSSVNAALANLADNAVDNVSL--- 259 Query: 436 DRRLVLTMDDLSKALRE-------HGVNLRHPEY---FADSPSAGMAPSTRE 561 + L+ ++L++AL E ++L+ + F D P AGM P T E Sbjct: 260 ---VRLSAEELTQALNEVRPFRRLADIDLKSYAFGSVFVDPPRAGMDPDTCE 308
>Q02FV3:TRMA_PSEAB tRNA - Pseudomonas aeruginosa (strain UCBPP-PA14)| Length = 363 Score = 30.8 bits (68), Expect = 6.4 Identities = 33/112 (29%), Positives = 51/112 (45%), Gaps = 10/112 (8%) Frame = +1 Query: 256 DELVEHYLGRSGFHCPDLRLTRLVAVAAQKFISDIASDSLQHCKARVAAPIKDNKSKQPK 435 D+L+E Y G F P TR+ V A ++I+ S+ A +A DN S Sbjct: 209 DDLLELYCGNGNFTLP--LATRVRKVLA----TEISKSSVNAALANLADNAVDNVSL--- 259 Query: 436 DRRLVLTMDDLSKALRE-------HGVNLRHPEY---FADSPSAGMAPSTRE 561 + L+ ++L++AL E ++L+ + F D P AGM P T E Sbjct: 260 ---VRLSAEELTQALNEVRPFRRLADIDLKSYAFGNVFVDPPRAGMDPDTCE 308 Database: uniprot_sprot.fasta.out Posted date: Jul 19, 2007 5:58 PM Number of letters in database: 100,686,439 Number of sequences in database: 274,295 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 274295 Number of Hits to DB: 102,168,658 Number of extensions: 1908895 Number of successful extensions: 4737 Number of sequences better than 10.0: 16 Number of HSP's gapped: 4733 Number of HSP's successfully gapped: 16 Length of query: 265 Length of database: 100,686,439 Length adjustment: 111 Effective length of query: 154 Effective length of database: 70,239,694 Effective search space: 10816912876 Effective search space used: 10816912876 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
