>Q6YYA3:CRS1_ORYSJ Chloroplastic group IIA intron splicing facilitator CRS1, chloroplast|
            precursor - Oryza sativa subsp. japonica (Rice)
          Length = 725
 Score =  245 bits (626), Expect = 7e-64
 Identities = 120/185 (64%), Positives = 138/185 (74%)
 Frame = +1

Query: 1282 VIEPLRQCMDRAREILEIKSGGLVVWTKGDVHFVYR*SSYLENIKHRQKSIADIQRVPLE 1461
            ++EPLR+CMDRAREILEIK+GGLVVWT+G +HFVYR SSYLEN K  +  +   + +   
Sbjct: 204  IVEPLRRCMDRAREILEIKTGGLVVWTRGGIHFVYRGSSYLENAKRHRDFVNYNEELSPV 263

Query: 1462 KCTAPEPQWKHESNAEPSTNHNDDAHGVF*GIDPSLAVHAYEEPVEGTVYEREVNRLLDS 1641
                P  Q K+ S  E  TN ND+A                ++P++GT+YEREVNRLLDS
Sbjct: 264  TSNNPTSQGKYWSKDETLTNDNDEADD------------KDDKPIKGTLYEREVNRLLDS 311

Query: 1642 LGPRFVDWWWNTPLPVDADLLPEVVPGFKTPFRQCPPGVRPTLADEELTYLRKLARPLPT 1821
            LGPRF+DWWWNTPLPVDADLLPEVVP FKTPFRQCPPGVRP LADEELTYLRK ARPLPT
Sbjct: 312  LGPRFIDWWWNTPLPVDADLLPEVVPDFKTPFRQCPPGVRPALADEELTYLRKHARPLPT 371

Query: 1822 HFALG 1836
            HF LG
Sbjct: 372  HFVLG 376

>Q9FYT6:CRS1_MAIZE Chloroplastic group IIA intron splicing facilitator CRS1, chloroplast|
            precursor - Zea mays (Maize)
          Length = 715

 Score =  229 bits (585), Expect = 4e-59
 Identities = 117/185 (63%), Positives = 132/185 (71%)
 Frame = +1

Query: 1282 VIEPLRQCMDRAREILEIKSGGLVVWTKGDVHFVYR*SSYLENIKHRQKSIADIQRVPLE 1461
            ++EPLR+ MDRAREILEIK+GGLVVWTKGD+HFVYR S Y +N KH    + ++      
Sbjct: 219  IVEPLRRSMDRAREILEIKTGGLVVWTKGDMHFVYRGSKYQQNAKHSHTFLTNV------ 272

Query: 1462 KCTAPEPQWKHESNAEPSTNHNDDAHGVF*GIDPSLAVHAYEEPVEGTVYEREVNRLLDS 1641
                                H DDA   F   D S+     EEPV+GT+YEREVNRLLD+
Sbjct: 273  --------------------HKDDA---FQENDQSICGQKDEEPVKGTLYEREVNRLLDT 309

Query: 1642 LGPRFVDWWWNTPLPVDADLLPEVVPGFKTPFRQCPPGVRPTLADEELTYLRKLARPLPT 1821
            LGPRFVDWWW+TPLPVDADLLPE VPG KTP+R CPPGVRPTLADEELTYLRKLAR LPT
Sbjct: 310  LGPRFVDWWWDTPLPVDADLLPEFVPGSKTPYRLCPPGVRPTLADEELTYLRKLARLLPT 369

Query: 1822 HFALG 1836
            HFALG
Sbjct: 370  HFALG 374

>Q9LF10:CRS1_ARATH Chloroplastic group IIA intron splicing facilitator CRS1, chloroplast|
            precursor - Arabidopsis thaliana (Mouse-ear cress)
          Length = 718

 Score =  121 bits (304), Expect = 2e-26
 Identities = 52/84 (61%), Positives = 64/84 (76%)
 Frame = +1

Query: 1585 EEPVEGTVYEREVNRLLDSLGPRFVDWWWNTPLPVDADLLPEVVPGFKTPFRQCPPGVRP 1764
            ++ +  ++YERE +RLLD LGPR++DWW   P PVDADLLPEVV G+ TP R+CPP  R 
Sbjct: 298  QDEISSSLYEREADRLLDGLGPRYMDWWMRRPFPVDADLLPEVVNGYMTPSRRCPPNTRA 357

Query: 1765 TLADEELTYLRKLARPLPTHFALG 1836
             L DEELTYLR +A+PLP HF LG
Sbjct: 358  KLTDEELTYLRNIAQPLPFHFVLG 381

>Q20059:YPR4_CAEEL Uncharacterized WD repeat protein F35G12.4 - Caenorhabditis elegans|
          Length = 683

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 20/65 (30%), Positives = 28/65 (43%)
 Frame = -2

Query: 1567 GLDQSLRKHHEHHHYDLLKARRCFRVSTGVQAQCIFQGELSEYQLWTSDDVLCFLDNYFI 1388
            G D  +R     HH D   AR   R S G  +   +QG L ++  W +D +LC      I
Sbjct: 48   GSDTIIRTWSVPHHKDAFSARGGVR-SPGKNSPVQYQGSLEQHTDWVNDMILCGHGKILI 106

Query: 1387 CKQNE 1373
               N+
Sbjct: 107  SASND 111

>O35219:KCNH2_MOUSE Potassium voltage-gated channel subfamily H member 2 - Mus musculus|
            (Mouse)
          Length = 1162

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
 Frame = +2

Query: 2588 SPGTCTVKQD*SSNWASSVGAT-----LPLLLRPKCRQNGARQGTLHGRGGPPTTMNMCD 2752
            SP   T  +  S++W +S  A      LP LL    R++  R G++H  G P   +   D
Sbjct: 140  SPAHDTNHRGPSTSWLASGRAKTFRLKLPALLALTARESSVRTGSMHSAGAPGAVVVDVD 199

Query: 2753 LTP 2761
            LTP
Sbjct: 200  LTP 202

>P07566:POLS_RUBVT Structural polyprotein - Rubella virus (strain Therien) (RUBV)|
          Length = 1063

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 26/106 (24%), Positives = 41/106 (38%), Gaps = 3/106 (2%)
 Frame = -2

Query: 1540 HEHHHYDLLKARRCFRVSTGVQAQCIFQGELSEYQL--WTSDDVLCFLDNY-FICKQNER 1370
            H+ HH   L+  + +R ++ V      QG    Y L  W     +C   +  F C +++R
Sbjct: 337  HDGHHGGTLRVGQHYRNASDVLPGHWLQGGWGCYNLSDWHQGTHVCHTKHMDFWCVEHDR 396

Query: 1369 XXXXXXXXXXXLSQVSPLLCPCTAGAAR*PHLND*CSSFTAKCSPV 1232
                        +  +    P TA A     LND C  F + C P+
Sbjct: 397  PPPATPTPLTTAANSTTAATPATAPAPCHAGLNDSCGGFLSGCGPM 442


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 514,074,325
Number of extensions: 11199821
Number of successful extensions: 28027
Number of sequences better than 10.0: 6
Number of HSP's gapped: 27792
Number of HSP's successfully gapped: 6
Length of query: 1004
Length of database: 100,686,439
Length adjustment: 123
Effective length of query: 881
Effective length of database: 66,948,154
Effective search space: 58981323674
Effective search space used: 58981323674
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)