>P37513:YYAK_BACSU Uncharacterized protein yyaK - Bacillus subtilis|
          Length = 299
 Score = 46.2 bits (108), Expect = 3e-04
 Identities = 27/82 (32%), Positives = 39/82 (47%), Gaps = 8/82 (9%)
 Frame = +2

Query: 719 SEEFLFRGALMPIFGL----NWISALVTGAFFGALHLGNGRKYSFAIWATFVGLAYGLA- 883
           +EE  FRG L+  FG          L+ G  FG LH  N    + A+WA    L +G   
Sbjct: 159 AEELFFRGFLLQAFGRLTKNPLFLTLIVGGLFGVLHFANPEMNNGAVWAGIEYLTFGFVW 218

Query: 884 ---TIASSSIIVPMASHSINNI 940
              TI + SI + + +H+ NN+
Sbjct: 219 TYYTIKTGSIEISLGAHAANNM 240

>P50730:YPBD_BACSU Uncharacterized protein ypbD - Bacillus subtilis|
          Length = 189

 Score = 45.1 bits (105), Expect = 6e-04
 Identities = 37/138 (26%), Positives = 59/138 (42%)
 Frame = +2

Query: 551 WHLELVAGLVILISSTRYILLQTWPDFRDSSEAANTQILTSLESLDYIVVACLPGISEEF 730
           W+   +A +VIL       +++ +P         N +I +       I +  L   +EE 
Sbjct: 37  WYGVSIAVIVILADMA---VMKWFPSHLYDDGGINKKIFSKRSIPHIIFLTLLIAFAEEM 93

Query: 731 LFRGALMPIFGLNWISALVTGAFFGALHLGNGRKYSFAIWATFVGLAYGLATIASSSIIV 910
           LFRG L    GL W ++L+    F ALH     K+   I  T +    GL    + ++ V
Sbjct: 94  LFRGVLQTHIGL-WTASLI----FAALHFRYLSKWLLFIMVTAISFLLGLMYEWTGNLFV 148

Query: 911 PMASHSINNIIGGLLWRF 964
           PM +H I + +     RF
Sbjct: 149 PMTAHFIIDAVFACQIRF 166

>P13974:YPRA_ECOLI Uncharacterized 24.3 kDa protein - Escherichia coli|
          Length = 217

 Score = 37.7 bits (86), Expect = 0.097
 Identities = 26/93 (27%), Positives = 42/93 (45%), Gaps = 5/93 (5%)
 Frame = +2

Query: 683 LDYIVVACLPGISEEFLFRGALMPIFGLN-----WISALVTGAFFGALHLGNGRKYSFAI 847
           L  + +  L  ++EE LFRG ++ +F        W+ AL+T   F A H       + A 
Sbjct: 122 LTLLTIFILAPLNEETLFRGIMLNVFRSRYCWTMWLGALITSLLFVAAHSQYQNLLTLA- 180

Query: 848 WATFVGLAYGLATIASSSIIVPMASHSINNIIG 946
               VGL   +A I S  +++P+  H     +G
Sbjct: 181 ELFLVGLITSVARIRSGGLLLPVLLHMEATTLG 213

>P38748:YHB0_YEAST RING finger protein YHL010C - Saccharomyces cerevisiae (Baker's|
           yeast)
          Length = 585

 Score = 34.3 bits (77), Expect = 1.1
 Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
 Frame = +1

Query: 691 HCSCLSPWDKRRVPVSRGTDANFWIE-LDKRPGNWCLFRCSSLGQRQEIFICNL-GNIRW 864
           HC CL+ W   R PV R +      E L K+ G+     C++ G    ++IC + GN+  
Sbjct: 264 HCQCLNKWKNSRCPVCRHSSLRLSRESLLKQAGDSA--HCATCGSTDNLWICLICGNV-- 319

Query: 865 PCLWFSNHSFLKHH 906
            C  +++   +KH+
Sbjct: 320 GCGRYNSKHAIKHY 333

>P45613:Y715_MYCCT Uncharacterized protein MCAP_0715 - Mycoplasma capricolum subsp.|
           capricolum (strain California kid / ATCC 27343 / NCTC
           10154)
          Length = 336

 Score = 34.3 bits (77), Expect = 1.1
 Identities = 24/91 (26%), Positives = 43/91 (47%), Gaps = 3/91 (3%)
 Frame = +2

Query: 692 IVVACLPGISEEFLFRGALMPIFGLNWISALVTGAFFGALHLGNGRKYS---FAIWATFV 862
           I+   +  + EE + R AL        +S +V+  +FG LH+ +G  Y+   + I   F 
Sbjct: 241 ILTVFIAPLCEEIVARQALFTGVSNKVLSIIVSSLYFGILHISSGDVYNIFPYVIGGFFF 300

Query: 863 GLAYGLATIASSSIIVPMASHSINNIIGGLL 955
            LA+   + +  ++     SHS  N+I  +L
Sbjct: 301 SLAF---SFSKGNLSYCWLSHSFYNLISVVL 328

>P55421:TRAG_RHISN Probable conjugal transfer protein traG - Rhizobium sp. (strain|
           NGR234)
          Length = 640

 Score = 33.9 bits (76), Expect = 1.4
 Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 3/87 (3%)
 Frame = +3

Query: 42  FEEPALISGSSLPVPESYSLIVAIRCG*WC---SQPQRAHRPSKVGNARSQLLPANIHIQ 212
           FE  + IS +++  PE+   I + RCG       Q  R+ +       RS+ L A   IQ
Sbjct: 532 FESASWISFAAINDPETADYI-SRRCGMTTVEIDQVSRSFQTKGSSRTRSKQLAARPLIQ 590

Query: 213 PHELCSEHLQQRIMRGNGDAPEICPKA 293
           PHE+      ++I+   G+AP  C +A
Sbjct: 591 PHEVLRMRADEQIVFTAGNAPLRCGRA 617

>Q9U1H8:FACE2_DROME CAAX prenyl protease 2 - Drosophila melanogaster (Fruit fly)|
          Length = 302

 Score = 32.7 bits (73), Expect = 3.1
 Identities = 24/95 (25%), Positives = 42/95 (44%), Gaps = 18/95 (18%)
 Frame = +2

Query: 716 ISEEFLFRGALMPIFGLNW---ISALVTGAFFGALHLGN-------GRKYSFA------- 844
           +SEEF+FR  +MP+   ++   ++  +T  FFG  HL +       G + S A       
Sbjct: 158 LSEEFVFRACMMPLILQSFSPLVAVFITPLFFGVAHLHHIAERLSLGVELSTALLIGLFQ 217

Query: 845 -IWATFVGLAYGLATIASSSIIVPMASHSINNIIG 946
            I+ T  G         +  ++ P+  H+  N +G
Sbjct: 218 FIYTTLFGFYSAFLFARTGHVMAPILVHAFCNHMG 252

>Q9CJ66:YBDJ_LACLA UPF0177 protein ybdJ - Lactococcus lactis subsp. lactis|
           (Streptococcus lactis)
          Length = 226

 Score = 32.3 bits (72), Expect = 4.1
 Identities = 30/100 (30%), Positives = 45/100 (45%), Gaps = 5/100 (5%)
 Frame = +2

Query: 680 SLDYIVVACLPGISEEFLFRGALMPIFGLNWISALVTGAFFGALHLGNGRKYSFAIW--- 850
           SLD  V+     ISEE ++R  L  +F    ++  V+   F  +H   G  YSF ++   
Sbjct: 132 SLDLFVIG---PISEELIYREYLYRLFDKKCLACFVSVTMFAWVH--TGFTYSFFLYLPI 186

Query: 851 ATFVGLAYGLATIASSSIIVPMASHSINNIIGGLL--WRF 964
           +  V LAY        SI +  + + IN  +  LL  W F
Sbjct: 187 SLVVTLAYHRRKAIGESIALHSSINLINTYLPNLLSFWVF 226

>Q28017:PAFA_BOVIN Platelet-activating factor acetylhydrolase precursor - Bos taurus|
            (Bovine)
          Length = 444

 Score = 31.2 bits (69), Expect = 9.1
 Identities = 27/103 (26%), Positives = 42/103 (40%), Gaps = 14/103 (13%)
 Frame = +2

Query: 746  LMPIFGLNWISALVTGAFFGAL--------HLGNGRKYSFAIWATFVGL------AYGLA 883
            L    G +W+   + G FFG++        HL  G KY   I++  +G       A G+ 
Sbjct: 107  LSKFLGTHWLVGKIMGLFFGSMTTPAAWNAHLRTGEKYPLIIFSHGLGAFRTIYSAIGI- 165

Query: 884  TIASSSIIVPMASHSINNIIGGLLWRFRDNSEREM*NGQYFLL 1012
             +AS   IV    H   +      + F+D S  E+ N  +  L
Sbjct: 166  DLASHGFIVAAVEHRDGS--ASSTYYFKDQSAVEIGNKSWLYL 206


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 227,885,690
Number of extensions: 5221819
Number of successful extensions: 13346
Number of sequences better than 10.0: 9
Number of HSP's gapped: 13337
Number of HSP's successfully gapped: 9
Length of query: 406
Length of database: 100,686,439
Length adjustment: 116
Effective length of query: 290
Effective length of database: 68,868,219
Effective search space: 19971783510
Effective search space used: 19971783510
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)